BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024632
(265 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 80.5 bits (197), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 51/133 (38%), Positives = 67/133 (50%)
Query: 57 NGFTSYLPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQ 116
NGFT +P N + L L+ L G+I L + + L+ L L N L G IP +L
Sbjct: 401 NGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELM 460
Query: 117 YXXXXXXXXXXXXXXXGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSN 176
Y GEIP L+ C LN I L +N LTG+IP+ +G L L+ +SN
Sbjct: 461 YVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSN 520
Query: 177 NKLSGPIPASLGN 189
N SG IPA LG+
Sbjct: 521 NSFSGNIPAELGD 533
Score = 74.3 bits (181), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 62/130 (47%), Gaps = 5/130 (3%)
Query: 85 GSISPYLSNCTNLQSLDLSSNALTGSIPADLQYXXXXXXXXXXXXXXXGEIPPQLTLCAY 144
G SP N ++ LD+S N L+G IP ++ G IP ++
Sbjct: 619 GHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRG 678
Query: 145 LNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEG 204
LN++DL N L G+IPQ + L L+ D+SNN LSGPIP G F + F
Sbjct: 679 LNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP-----EMGQFETFPPAKFLN 733
Query: 205 NKDLYGYPLP 214
N L GYPLP
Sbjct: 734 NPGLCGYPLP 743
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 48/114 (42%), Gaps = 27/114 (23%)
Query: 71 GRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYXXXXXXXXXXXXX 130
G + L+++ + G + +S C NL+ LD+SSN + IP
Sbjct: 175 GELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF----------------- 215
Query: 131 XXGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIP 184
L C+ L +D+ N L+G + + L ++S+N+ GPIP
Sbjct: 216 --------LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIP 261
Score = 32.3 bits (72), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 76/183 (41%), Gaps = 38/183 (20%)
Query: 40 PYKNLQNWTKSTFSNACNGFTSYLP---GATCNNGRIYKLSLTNLSLQGSISPYLSNCTN 96
P K+LQ S A N FT +P C+ + L L+ G++ P+ +C+
Sbjct: 264 PLKSLQ-----YLSLAENKFTGEIPDFLSGACDT--LTGLDLSGNHFYGAVPPFFGSCSL 316
Query: 97 LQSLDLSSNALTGSIPAD-LQYXXXXXXXXXXXXXXXGEIPPQLT-LCAYLNVID----- 149
L+SL LSSN +G +P D L GE+P LT L A L +D
Sbjct: 317 LESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNN 376
Query: 150 ---------------------LHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLG 188
L +N TG+IP L L + +S N LSG IP+SLG
Sbjct: 377 FSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLG 436
Query: 189 NRS 191
+ S
Sbjct: 437 SLS 439
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 80.5 bits (197), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 51/133 (38%), Positives = 67/133 (50%)
Query: 57 NGFTSYLPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQ 116
NGFT +P N + L L+ L G+I L + + L+ L L N L G IP +L
Sbjct: 404 NGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELM 463
Query: 117 YXXXXXXXXXXXXXXXGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSN 176
Y GEIP L+ C LN I L +N LTG+IP+ +G L L+ +SN
Sbjct: 464 YVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSN 523
Query: 177 NKLSGPIPASLGN 189
N SG IPA LG+
Sbjct: 524 NSFSGNIPAELGD 536
Score = 74.3 bits (181), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 62/130 (47%), Gaps = 5/130 (3%)
Query: 85 GSISPYLSNCTNLQSLDLSSNALTGSIPADLQYXXXXXXXXXXXXXXXGEIPPQLTLCAY 144
G SP N ++ LD+S N L+G IP ++ G IP ++
Sbjct: 622 GHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRG 681
Query: 145 LNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEG 204
LN++DL N L G+IPQ + L L+ D+SNN LSGPIP G F + F
Sbjct: 682 LNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP-----EMGQFETFPPAKFLN 736
Query: 205 NKDLYGYPLP 214
N L GYPLP
Sbjct: 737 NPGLCGYPLP 746
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 48/114 (42%), Gaps = 27/114 (23%)
Query: 71 GRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYXXXXXXXXXXXXX 130
G + L+++ + G + +S C NL+ LD+SSN + IP
Sbjct: 178 GELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF----------------- 218
Query: 131 XXGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIP 184
L C+ L +D+ N L+G + + L ++S+N+ GPIP
Sbjct: 219 --------LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIP 264
Score = 32.3 bits (72), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 76/183 (41%), Gaps = 38/183 (20%)
Query: 40 PYKNLQNWTKSTFSNACNGFTSYLP---GATCNNGRIYKLSLTNLSLQGSISPYLSNCTN 96
P K+LQ S A N FT +P C+ + L L+ G++ P+ +C+
Sbjct: 267 PLKSLQ-----YLSLAENKFTGEIPDFLSGACDT--LTGLDLSGNHFYGAVPPFFGSCSL 319
Query: 97 LQSLDLSSNALTGSIPAD-LQYXXXXXXXXXXXXXXXGEIPPQLT-LCAYLNVID----- 149
L+SL LSSN +G +P D L GE+P LT L A L +D
Sbjct: 320 LESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNN 379
Query: 150 ---------------------LHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLG 188
L +N TG+IP L L + +S N LSG IP+SLG
Sbjct: 380 FSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLG 439
Query: 189 NRS 191
+ S
Sbjct: 440 SLS 442
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 83/183 (45%), Gaps = 10/183 (5%)
Query: 33 LSQSLKDPYKNLQNWTKSTFSNACNGFTSYLPGATCNNGRIY-KLSLTNLSLQGSISPYL 91
LS +L +L N TF N + +P + + +++ ++++ L G I P
Sbjct: 137 LSGTLPPSISSLPNLVGITFDG--NRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF 194
Query: 92 SNCTNLQSLDLSSNALTGSIPADLQYXXXXXXXXXXXXXXXGEIPPQLTLCAYLNVIDLH 151
+N NL +DLS N L G ++ ++ L LN +DL
Sbjct: 195 ANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLR 252
Query: 152 DNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKDLYGY 211
+N + G +PQ L L L + +VS N L G IP + GNL +F+ S++ NK L G
Sbjct: 253 NNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-----QGGNLQRFDVSAYANNKCLCGS 307
Query: 212 PLP 214
PLP
Sbjct: 308 PLP 310
>pdb|3V0J|A Chain A, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Deletion Of 401-405
pdb|3V0J|B Chain B, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Deletion Of 401-405
Length = 334
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Query: 202 FEGNKDLYGYPLPPMKS---KGLSVLAIVGIGLGSG 234
FE K YG LPPMK G+++ AI G+G G+G
Sbjct: 180 FEKIKKNYGGQLPPMKKLKVTGVTITAIQGVGRGNG 215
>pdb|3V0D|A Chain A, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s)
pdb|3V0D|B Chain B, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s)
pdb|3V0F|A Chain A, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Form Ii
pdb|3V0F|B Chain B, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Form Ii
pdb|3V0G|A Chain A, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Form Iii
pdb|3V0G|B Chain B, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Form Iii
pdb|3V0G|C Chain C, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Form Iii
pdb|3V0G|D Chain D, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Form Iii
pdb|3V0H|A Chain A, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Complexed With D-Myo-
Inositol-1,4,5-Triphosphate
pdb|3V0H|B Chain B, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Complexed With D-Myo-
Inositol-1,4,5-Triphosphate
Length = 339
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Query: 202 FEGNKDLYGYPLPPMKS---KGLSVLAIVGIGLGSG 234
FE K YG LPPMK G+++ AI G+G G+G
Sbjct: 185 FEKIKKNYGGQLPPMKKLKVTGVTITAIQGVGRGNG 220
>pdb|3AWF|A Chain A, Crystal Structure Of Pten-Like Domain Of Ci-Vsp (236-576)
pdb|3AWF|B Chain B, Crystal Structure Of Pten-Like Domain Of Ci-Vsp (236-576)
pdb|3AWF|C Chain C, Crystal Structure Of Pten-Like Domain Of Ci-Vsp (236-576)
Length = 346
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Query: 202 FEGNKDLYGYPLPPMKS---KGLSVLAIVGIGLGSG 234
FE K YG LPPMK G+++ AI G+G G+G
Sbjct: 192 FEKIKKNYGGQLPPMKKLKVTGVTITAIQGVGRGNG 227
>pdb|3AWG|A Chain A, Crystal Structure Of Pten-Like Domain Of Ci-Vsp G356a
Mutant (248-576)
pdb|3AWG|B Chain B, Crystal Structure Of Pten-Like Domain Of Ci-Vsp G356a
Mutant (248-576)
pdb|3AWG|C Chain C, Crystal Structure Of Pten-Like Domain Of Ci-Vsp G356a
Mutant (248-576)
Length = 334
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Query: 202 FEGNKDLYGYPLPPMKS---KGLSVLAIVGIGLGSG 234
FE K YG LPPMK G+++ AI G+G G+G
Sbjct: 180 FEKIKKNYGGQLPPMKKLKVTGVTITAIQGVGRGNG 215
>pdb|3AWE|A Chain A, Crystal Structure Of Pten-Like Domain Of Ci-Vsp (248-576)
pdb|3AWE|B Chain B, Crystal Structure Of Pten-Like Domain Of Ci-Vsp (248-576)
pdb|3AWE|C Chain C, Crystal Structure Of Pten-Like Domain Of Ci-Vsp (248-576)
Length = 334
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Query: 202 FEGNKDLYGYPLPPMKS---KGLSVLAIVGIGLGSG 234
FE K YG LPPMK G+++ AI G+G G+G
Sbjct: 180 FEKIKKNYGGQLPPMKKLKVTGVTITAIQGVGRGNG 215
>pdb|3V0I|A Chain A, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
256-576, E411f
Length = 324
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Query: 202 FEGNKDLYGYPLPPMKS---KGLSVLAIVGIGLGSG 234
FE K YG LPPMK G+++ AI G+G G+G
Sbjct: 170 FEKIKKNYGGQLPPMKKLKVTGVTITAIQGVGRGNG 205
>pdb|3V0E|A Chain A, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
256-576(C363s)
Length = 324
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Query: 202 FEGNKDLYGYPLPPMKS---KGLSVLAIVGIGLGSG 234
FE K YG LPPMK G+++ AI G+G G+G
Sbjct: 170 FEKIKKNYGGQLPPMKKLKVTGVTITAIQGVGRGNG 205
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 80 NLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQ 116
NL + Y SN TNL+ LDLSSN + DL+
Sbjct: 134 NLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR 170
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 80 NLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQ 116
NL + Y SN TNL+ LDLSSN + DL+
Sbjct: 158 NLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR 194
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 80 NLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQ 116
NL + Y SN TNL+ LDLSSN + DL+
Sbjct: 134 NLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR 170
>pdb|3OJA|A Chain A, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 487
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 63/145 (43%), Gaps = 31/145 (21%)
Query: 70 NGRIYKLS-LTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYXXXXXXXXXXX 128
NG YK+ +T+ SL+ +++ + N++ LDLS N L+ ADL
Sbjct: 8 NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADL------------- 54
Query: 129 XXXXGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNK----LSGPIP 184
P L +++L N+L + L L L D++NN L GP
Sbjct: 55 -------AP----FTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSI 101
Query: 185 ASLGNRSGNLPKFNASSFEGNKDLY 209
+L + N+ + + S +G K++Y
Sbjct: 102 ETLHAANNNISRVSCSRGQGKKNIY 126
>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
Length = 317
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 63/145 (43%), Gaps = 31/145 (21%)
Query: 70 NGRIYKLS-LTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYXXXXXXXXXXX 128
NG YK+ +T+ SL+ +++ + N++ LDLS N L+ ADL
Sbjct: 8 NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADL------------- 54
Query: 129 XXXXGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNK----LSGPIP 184
P L +++L N+L + L L L D++NN L GP
Sbjct: 55 -------AP----FTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSI 101
Query: 185 ASLGNRSGNLPKFNASSFEGNKDLY 209
+L + N+ + + S +G K++Y
Sbjct: 102 ETLHAANNNISRVSCSRGQGKKNIY 126
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 80 NLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQ 116
NL + Y SN TNL+ LDLSSN + DL+
Sbjct: 134 NLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR 170
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 80 NLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQ 116
NL + Y SN TNL+ LDLSSN + DL+
Sbjct: 136 NLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR 172
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 80 NLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQ 116
NL + Y SN TNL+ LDLSSN + DL+
Sbjct: 135 NLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR 171
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 80 NLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQ 116
NL + Y SN TNL+ LDLSSN + DL+
Sbjct: 136 NLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR 172
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 80 NLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQ 116
NL + Y SN TNL+ LDLSSN + DL+
Sbjct: 135 NLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR 171
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 27.7 bits (60), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 28/48 (58%), Gaps = 6/48 (12%)
Query: 73 IYKLS-LTNLSLQG----SISPYLSNCTNLQSLDLSSNALTGSIPADL 115
I+K LT L L G + + N +NL+ LDLS N LT S+PA+L
Sbjct: 243 IFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT-SLPAEL 289
Score = 27.7 bits (60), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 134 EIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGN 189
E+P ++ + L V+DL N LT +P +LG +L F +N ++ +P GN
Sbjct: 261 ELPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYFYFFDNMVTT-LPWEFGN 314
>pdb|1Y4Z|B Chain B, The Crystal Structure Of Nitrate Reductase A, Narghi, In
Complex With The Q-Site Inhibitor Pentachlorophenol
Length = 512
Score = 27.3 bits (59), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 11/53 (20%)
Query: 42 KNLQNWTKSTFSNACNGFTSYLPG-----------ATCNNGRIYKLSLTNLSL 83
KN N K+ +S N F YLP ATC +G IYK + L
Sbjct: 159 KNFDNIQKAMYSQFENTFMMYLPRLCEHCLNPACVATCPSGAIYKREEDGIVL 211
>pdb|1Q16|B Chain B, Crystal Structure Of Nitrate Reductase A, Narghi, From
Escherichia Coli
pdb|1R27|B Chain B, Crystal Structure Of Nargh Complex
pdb|1R27|D Chain D, Crystal Structure Of Nargh Complex
pdb|1SIW|B Chain B, Crystal Structure Of The Apomolybdo-Narghi
pdb|1Y5I|B Chain B, The Crystal Structure Of The Narghi Mutant Nari-K86a
pdb|1Y5L|B Chain B, The Crystal Structure Of The Narghi Mutant Nari-H66y
pdb|1Y5N|B Chain B, The Crystal Structure Of The Narghi Mutant Nari-K86a In
Complex With Pentachlorophenol
pdb|3IR5|B Chain B, Crystal Structure Of Narghi Mutant Narg-H49c
pdb|3IR6|B Chain B, Crystal Structure Of Narghi Mutant Narg-H49s
pdb|3IR7|B Chain B, Crystal Structure Of Narghi Mutant Narg-R94s
Length = 512
Score = 27.3 bits (59), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 11/53 (20%)
Query: 42 KNLQNWTKSTFSNACNGFTSYLPG-----------ATCNNGRIYKLSLTNLSL 83
KN N K+ +S N F YLP ATC +G IYK + L
Sbjct: 159 KNFDNIQKAMYSQFENTFMMYLPRLCEHCLNPACVATCPSGAIYKREEDGIVL 211
>pdb|3EGW|B Chain B, The Crystal Structure Of The Narghi Mutant Narh - C16a
Length = 509
Score = 27.3 bits (59), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 11/53 (20%)
Query: 42 KNLQNWTKSTFSNACNGFTSYLPG-----------ATCNNGRIYKLSLTNLSL 83
KN N K+ +S N F YLP ATC +G IYK + L
Sbjct: 159 KNFDNIQKAMYSQFENTFMMYLPRLCEHCLNPACVATCPSGAIYKREEDGIVL 211
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,544,129
Number of Sequences: 62578
Number of extensions: 290786
Number of successful extensions: 711
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 583
Number of HSP's gapped (non-prelim): 79
length of query: 265
length of database: 14,973,337
effective HSP length: 97
effective length of query: 168
effective length of database: 8,903,271
effective search space: 1495749528
effective search space used: 1495749528
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)