Query 024632
Match_columns 265
No_of_seqs 341 out of 4402
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 06:12:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024632.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024632hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03150 hypothetical protein; 99.9 2.9E-23 6.2E-28 195.4 14.6 203 21-251 368-571 (623)
2 PLN00113 leucine-rich repeat r 99.9 3.1E-21 6.7E-26 191.0 16.8 175 19-206 23-199 (968)
3 PLN00113 leucine-rich repeat r 99.9 1.6E-21 3.5E-26 193.0 13.4 137 71-212 475-611 (968)
4 PLN03150 hypothetical protein; 99.6 1.6E-15 3.5E-20 143.0 12.3 111 72-182 419-530 (623)
5 KOG0617 Ras suppressor protein 99.6 6.3E-17 1.4E-21 124.9 -2.8 136 63-206 48-184 (264)
6 KOG0617 Ras suppressor protein 99.5 1.2E-16 2.5E-21 123.4 -4.8 137 63-208 26-163 (264)
7 KOG4194 Membrane glycoprotein 99.5 6.8E-15 1.5E-19 132.1 -0.3 140 64-207 262-428 (873)
8 KOG4194 Membrane glycoprotein 99.5 7.9E-15 1.7E-19 131.7 -0.7 145 64-213 286-457 (873)
9 KOG0472 Leucine-rich repeat pr 99.4 1.1E-13 2.5E-18 119.4 0.7 125 75-207 416-540 (565)
10 KOG0444 Cytoskeletal regulator 99.3 2.1E-13 4.4E-18 123.7 1.4 136 63-206 95-256 (1255)
11 KOG0472 Leucine-rich repeat pr 99.3 1.6E-13 3.4E-18 118.6 -2.0 117 61-180 425-541 (565)
12 KOG4237 Extracellular matrix p 99.3 3.7E-13 8.1E-18 116.0 -0.2 52 57-108 77-129 (498)
13 KOG0444 Cytoskeletal regulator 99.3 3.2E-13 7E-18 122.5 -1.8 142 63-212 214-379 (1255)
14 KOG0532 Leucine-rich repeat (L 99.2 4.1E-13 9E-18 120.4 -2.3 133 63-206 113-245 (722)
15 KOG0618 Serine/threonine phosp 99.2 6.6E-13 1.4E-17 124.7 -1.9 129 70-207 358-488 (1081)
16 PF14580 LRR_9: Leucine-rich r 99.2 2.2E-11 4.7E-16 96.5 4.7 127 70-202 18-147 (175)
17 KOG1259 Nischarin, modulator o 99.0 2E-11 4.4E-16 102.3 -1.1 129 70-207 283-411 (490)
18 KOG4237 Extracellular matrix p 99.0 2.1E-11 4.5E-16 105.3 -1.2 139 72-215 68-208 (498)
19 PRK15370 E3 ubiquitin-protein 99.0 2.9E-10 6.4E-15 108.8 6.0 104 72-186 263-385 (754)
20 PF14580 LRR_9: Leucine-rich r 99.0 2.2E-10 4.7E-15 90.8 3.6 109 91-207 15-125 (175)
21 cd00116 LRR_RI Leucine-rich re 99.0 5.4E-11 1.2E-15 103.3 0.2 139 68-206 78-232 (319)
22 KOG0532 Leucine-rich repeat (L 98.9 1.8E-10 4E-15 103.6 1.0 120 63-189 136-255 (722)
23 KOG0618 Serine/threonine phosp 98.9 1.4E-10 3.1E-15 109.4 0.3 110 63-178 376-487 (1081)
24 PRK15387 E3 ubiquitin-protein 98.9 1.1E-09 2.4E-14 104.6 6.3 123 71-208 302-458 (788)
25 PF13855 LRR_8: Leucine rich r 98.9 3.7E-10 8E-15 73.9 2.0 59 120-178 2-60 (61)
26 PRK15370 E3 ubiquitin-protein 98.9 2.5E-09 5.4E-14 102.5 8.0 102 71-185 199-300 (754)
27 KOG1259 Nischarin, modulator o 98.9 1.3E-10 2.8E-15 97.5 -1.1 136 44-185 280-416 (490)
28 PF13855 LRR_8: Leucine rich r 98.9 5.1E-10 1.1E-14 73.2 1.7 59 96-154 2-60 (61)
29 PLN03210 Resistant to P. syrin 98.9 7.3E-09 1.6E-13 104.6 9.9 128 71-208 778-906 (1153)
30 PLN03210 Resistant to P. syrin 98.9 1E-08 2.2E-13 103.6 10.8 124 73-205 591-714 (1153)
31 cd00116 LRR_RI Leucine-rich re 98.9 2.6E-10 5.6E-15 99.0 -1.5 141 67-207 47-205 (319)
32 PRK15387 E3 ubiquitin-protein 98.8 3.3E-09 7.2E-14 101.5 5.6 108 72-189 343-467 (788)
33 COG4886 Leucine-rich repeat (L 98.7 1E-08 2.2E-13 92.0 4.1 106 70-179 115-221 (394)
34 COG4886 Leucine-rich repeat (L 98.7 8.5E-09 1.8E-13 92.6 3.0 136 63-207 131-289 (394)
35 KOG4579 Leucine-rich repeat (L 98.6 2.8E-09 6E-14 79.8 -2.0 111 72-187 28-142 (177)
36 KOG1859 Leucine-rich repeat pr 98.6 3.5E-10 7.6E-15 104.5 -8.3 130 71-210 164-294 (1096)
37 KOG4658 Apoptotic ATPase [Sign 98.3 4.2E-07 9E-12 88.8 4.0 107 71-178 545-653 (889)
38 KOG4579 Leucine-rich repeat (L 98.3 6.6E-08 1.4E-12 72.5 -1.5 113 69-185 51-164 (177)
39 PF12799 LRR_4: Leucine Rich r 98.2 1.4E-06 3E-11 52.8 3.3 36 144-180 2-37 (44)
40 PF12799 LRR_4: Leucine Rich r 98.2 1.6E-06 3.4E-11 52.5 2.7 36 120-156 2-37 (44)
41 KOG4658 Apoptotic ATPase [Sign 98.1 1.6E-06 3.5E-11 84.8 3.8 127 70-203 522-650 (889)
42 KOG0531 Protein phosphatase 1, 98.1 5.2E-07 1.1E-11 81.7 -0.1 106 69-180 93-199 (414)
43 KOG0531 Protein phosphatase 1, 98.1 1.1E-06 2.3E-11 79.7 0.8 106 70-181 71-176 (414)
44 KOG3207 Beta-tubulin folding c 98.0 1.3E-06 2.9E-11 76.9 0.9 87 93-180 220-314 (505)
45 KOG3207 Beta-tubulin folding c 98.0 1.1E-06 2.3E-11 77.5 0.0 141 66-207 141-313 (505)
46 KOG1859 Leucine-rich repeat pr 98.0 8.8E-08 1.9E-12 89.0 -7.2 106 70-180 186-292 (1096)
47 PF08263 LRRNT_2: Leucine rich 97.9 2.8E-05 6E-10 46.8 4.6 41 24-69 2-43 (43)
48 KOG1644 U2-associated snRNP A' 97.9 2E-05 4.4E-10 63.0 4.6 105 71-178 42-151 (233)
49 KOG1644 U2-associated snRNP A' 97.7 6E-05 1.3E-09 60.3 4.8 107 94-204 41-149 (233)
50 KOG1909 Ran GTPase-activating 97.7 9E-06 2E-10 69.9 -0.2 134 71-204 92-250 (382)
51 KOG2739 Leucine-rich acidic nu 97.6 4.1E-05 8.8E-10 63.5 2.5 117 54-174 26-150 (260)
52 KOG3665 ZYG-1-like serine/thre 97.3 7.8E-05 1.7E-09 71.4 1.3 126 62-189 138-272 (699)
53 PRK15386 type III secretion pr 97.2 0.0013 2.8E-08 58.9 7.0 14 71-84 52-65 (426)
54 KOG1909 Ran GTPase-activating 97.1 8.8E-05 1.9E-09 63.9 -0.9 41 116-156 210-254 (382)
55 KOG3665 ZYG-1-like serine/thre 97.0 0.00017 3.7E-09 69.1 0.2 134 71-206 122-261 (699)
56 KOG2739 Leucine-rich acidic nu 97.0 0.00061 1.3E-08 56.6 3.3 91 87-181 35-130 (260)
57 PRK15386 type III secretion pr 97.0 0.0021 4.5E-08 57.6 6.7 95 71-177 72-187 (426)
58 KOG2982 Uncharacterized conser 96.7 0.0012 2.6E-08 56.2 2.9 136 69-207 95-261 (418)
59 KOG2982 Uncharacterized conser 96.4 0.0013 2.7E-08 56.0 1.1 85 94-179 70-158 (418)
60 KOG2123 Uncharacterized conser 96.4 0.00024 5.3E-09 59.7 -3.1 78 69-149 39-123 (388)
61 KOG2120 SCF ubiquitin ligase, 96.2 0.00026 5.6E-09 60.1 -3.8 59 141-202 311-370 (419)
62 PF01102 Glycophorin_A: Glycop 96.1 0.012 2.5E-07 43.6 4.6 36 219-254 59-94 (122)
63 PF00560 LRR_1: Leucine Rich R 96.1 0.0025 5.3E-08 32.2 0.7 12 145-156 2-13 (22)
64 KOG0473 Leucine-rich repeat pr 96.0 0.0002 4.4E-09 58.7 -5.3 85 69-156 40-124 (326)
65 KOG0473 Leucine-rich repeat pr 95.8 0.0002 4.3E-09 58.7 -6.2 88 90-180 37-124 (326)
66 PF13306 LRR_5: Leucine rich r 95.6 0.029 6.4E-07 41.5 5.4 105 67-176 8-112 (129)
67 PF00560 LRR_1: Leucine Rich R 95.6 0.0027 5.9E-08 32.0 -0.2 18 121-139 2-19 (22)
68 PF02439 Adeno_E3_CR2: Adenovi 95.5 0.034 7.4E-07 31.8 3.9 14 238-251 20-33 (38)
69 COG5238 RNA1 Ran GTPase-activa 95.5 0.026 5.7E-07 47.7 5.0 111 69-180 90-227 (388)
70 KOG2123 Uncharacterized conser 95.1 0.002 4.3E-08 54.4 -2.8 99 70-173 18-123 (388)
71 KOG2120 SCF ubiquitin ligase, 94.8 0.00029 6.4E-09 59.8 -8.4 57 72-128 186-243 (419)
72 COG5238 RNA1 Ran GTPase-activa 94.4 0.019 4.1E-07 48.5 1.4 113 91-208 88-227 (388)
73 PF02009 Rifin_STEVOR: Rifin/s 93.6 0.073 1.6E-06 45.8 3.4 25 233-257 264-288 (299)
74 PF13306 LRR_5: Leucine rich r 93.4 0.076 1.7E-06 39.3 3.0 100 65-169 29-128 (129)
75 PF04478 Mid2: Mid2 like cell 92.9 0.017 3.7E-07 44.1 -1.2 34 224-257 49-82 (154)
76 smart00370 LRR Leucine-rich re 92.2 0.15 3.3E-06 26.5 2.2 18 167-185 2-19 (26)
77 smart00369 LRR_TYP Leucine-ric 92.2 0.15 3.3E-06 26.5 2.2 18 167-185 2-19 (26)
78 PF14575 EphA2_TM: Ephrin type 92.0 0.14 2.9E-06 34.6 2.3 26 227-252 3-28 (75)
79 smart00369 LRR_TYP Leucine-ric 91.5 0.17 3.6E-06 26.4 1.9 12 121-132 4-15 (26)
80 smart00370 LRR Leucine-rich re 91.5 0.17 3.6E-06 26.4 1.9 12 121-132 4-15 (26)
81 PF05454 DAG1: Dystroglycan (D 91.5 0.055 1.2E-06 46.2 0.0 31 229-259 151-181 (290)
82 PTZ00382 Variant-specific surf 91.3 0.054 1.2E-06 38.5 -0.2 21 217-237 59-79 (96)
83 PF07213 DAP10: DAP10 membrane 91.2 0.48 1.1E-05 31.9 4.3 40 220-259 30-69 (79)
84 PF08693 SKG6: Transmembrane a 91.2 0.039 8.5E-07 32.1 -0.8 10 243-252 30-39 (40)
85 PF02439 Adeno_E3_CR2: Adenovi 91.2 0.6 1.3E-05 26.7 4.0 30 226-255 5-34 (38)
86 PF05568 ASFV_J13L: African sw 90.4 0.38 8.3E-06 36.3 3.6 9 257-265 62-70 (189)
87 PTZ00046 rifin; Provisional 89.1 0.48 1.1E-05 41.6 3.7 23 235-257 325-347 (358)
88 TIGR01477 RIFIN variant surfac 88.9 0.51 1.1E-05 41.3 3.7 19 239-257 324-342 (353)
89 PF13516 LRR_6: Leucine Rich r 84.8 0.16 3.4E-06 25.9 -1.0 14 143-156 2-15 (24)
90 PF08374 Protocadherin: Protoc 82.5 0.93 2E-05 36.7 2.0 14 224-237 38-51 (221)
91 PF05393 Hum_adeno_E3A: Human 81.7 2.2 4.7E-05 29.3 3.3 13 241-253 48-60 (94)
92 smart00364 LRR_BAC Leucine-ric 81.5 1 2.2E-05 23.7 1.3 12 145-156 4-15 (26)
93 TIGR01478 STEVOR variant surfa 79.5 2.2 4.9E-05 36.1 3.4 16 240-255 273-288 (295)
94 smart00365 LRR_SD22 Leucine-ri 79.4 1.9 4.1E-05 22.6 1.9 14 95-108 2-15 (26)
95 PTZ00370 STEVOR; Provisional 79.2 2.3 4.9E-05 36.2 3.3 16 240-255 269-284 (296)
96 PF12877 DUF3827: Domain of un 79.1 2.5 5.5E-05 39.9 3.9 33 216-248 262-294 (684)
97 PF06365 CD34_antigen: CD34/Po 78.9 2.3 4.9E-05 34.4 3.2 31 225-255 101-132 (202)
98 PHA03265 envelope glycoprotein 78.9 0.89 1.9E-05 39.5 0.9 32 225-256 348-380 (402)
99 PF04689 S1FA: DNA binding pro 78.8 3 6.6E-05 26.8 3.0 34 218-251 7-40 (69)
100 PF10873 DUF2668: Protein of u 77.5 2 4.4E-05 32.5 2.3 29 219-247 56-84 (155)
101 PF12191 stn_TNFRSF12A: Tumour 77.2 0.8 1.7E-05 33.8 0.1 15 243-257 96-110 (129)
102 PF01102 Glycophorin_A: Glycop 77.2 4.5 9.8E-05 30.0 4.1 36 220-255 63-98 (122)
103 TIGR00864 PCC polycystin catio 76.4 1.3 2.8E-05 48.6 1.4 34 149-182 1-34 (2740)
104 KOG4308 LRR-containing protein 75.8 0.036 7.8E-07 51.1 -9.0 135 72-206 145-301 (478)
105 PF06024 DUF912: Nucleopolyhed 75.7 1.9 4.1E-05 30.9 1.7 10 226-235 63-72 (101)
106 PF02009 Rifin_STEVOR: Rifin/s 75.4 3.1 6.7E-05 36.0 3.2 32 227-258 261-292 (299)
107 PF15102 TMEM154: TMEM154 prot 75.3 1.1 2.3E-05 34.2 0.3 7 227-233 58-64 (146)
108 KOG1947 Leucine rich repeat pr 74.4 1.3 2.9E-05 40.3 0.8 89 91-179 210-307 (482)
109 PF01299 Lamp: Lysosome-associ 73.6 2.7 5.9E-05 36.5 2.5 11 226-236 272-282 (306)
110 PF13908 Shisa: Wnt and FGF in 73.1 2 4.2E-05 34.2 1.4 7 225-231 80-86 (179)
111 PF15065 NCU-G1: Lysosomal tra 72.2 1.7 3.7E-05 38.4 0.9 25 220-244 314-338 (350)
112 smart00368 LRR_RI Leucine rich 72.1 3.6 7.8E-05 21.8 1.9 11 121-131 4-14 (28)
113 PF06697 DUF1191: Protein of u 69.1 2.4 5.2E-05 36.0 1.1 16 87-102 71-86 (278)
114 PF14610 DUF4448: Protein of u 68.4 1.5 3.2E-05 35.3 -0.3 24 227-250 160-183 (189)
115 PF12768 Rax2: Cortical protei 68.4 4.4 9.5E-05 34.8 2.6 15 219-233 222-236 (281)
116 KOG3864 Uncharacterized conser 68.2 0.81 1.8E-05 37.1 -1.8 80 71-150 101-183 (221)
117 PF03302 VSP: Giardia variant- 68.0 2.9 6.2E-05 37.8 1.5 21 217-237 360-380 (397)
118 PF14991 MLANA: Protein melan- 67.5 0.94 2E-05 32.7 -1.4 10 226-235 26-35 (118)
119 PF14979 TMEM52: Transmembrane 63.7 26 0.00057 26.7 5.5 25 224-248 19-43 (154)
120 PF15176 LRR19-TM: Leucine-ric 63.1 23 0.00049 25.2 4.8 27 220-246 14-40 (102)
121 KOG3763 mRNA export factor TAP 59.9 5.7 0.00012 37.0 1.8 36 70-105 217-254 (585)
122 PHA03286 envelope glycoprotein 59.2 9.8 0.00021 34.5 3.1 26 226-251 393-418 (492)
123 PF08374 Protocadherin: Protoc 59.0 14 0.0003 30.1 3.7 19 222-240 39-57 (221)
124 PF01372 Melittin: Melittin; 58.2 12 0.00027 19.1 2.1 18 237-254 8-25 (26)
125 PF13956 Ibs_toxin: Toxin Ibs, 56.8 8.2 0.00018 18.2 1.2 14 1-14 1-14 (19)
126 PF06809 NPDC1: Neural prolife 56.3 7 0.00015 33.7 1.6 19 240-258 213-231 (341)
127 PF06024 DUF912: Nucleopolyhed 56.0 4 8.6E-05 29.2 0.1 29 219-247 59-87 (101)
128 PF07204 Orthoreo_P10: Orthore 55.9 5.4 0.00012 27.8 0.8 9 240-248 57-65 (98)
129 PF13268 DUF4059: Protein of u 55.9 17 0.00038 24.0 3.1 18 244-261 26-43 (72)
130 KOG1947 Leucine rich repeat pr 55.7 3.5 7.6E-05 37.5 -0.3 111 94-207 187-307 (482)
131 PF02480 Herpes_gE: Alphaherpe 55.4 3.9 8.5E-05 37.4 0.0 27 225-251 356-382 (439)
132 TIGR01477 RIFIN variant surfac 55.0 13 0.00028 32.8 3.1 29 229-257 317-345 (353)
133 PF06305 DUF1049: Protein of u 53.9 14 0.0003 23.9 2.5 14 223-236 20-33 (68)
134 TIGR01478 STEVOR variant surfa 53.8 19 0.0004 30.8 3.7 27 225-251 262-288 (295)
135 PTZ00046 rifin; Provisional 53.3 14 0.0003 32.7 3.0 30 228-257 321-350 (358)
136 PTZ00370 STEVOR; Provisional 52.5 18 0.00039 30.9 3.4 27 225-251 258-284 (296)
137 PF13908 Shisa: Wnt and FGF in 52.0 7.5 0.00016 30.8 1.1 10 226-235 77-86 (179)
138 PF12768 Rax2: Cortical protei 49.0 27 0.00059 30.0 4.1 35 217-251 224-258 (281)
139 PF10577 UPF0560: Uncharacteri 49.0 27 0.00058 34.2 4.4 7 182-188 208-214 (807)
140 PF05808 Podoplanin: Podoplani 48.9 5.7 0.00012 30.8 0.0 32 217-248 122-153 (162)
141 PHA03099 epidermal growth fact 48.7 17 0.00037 27.1 2.4 10 244-253 121-130 (139)
142 PF14914 LRRC37AB_C: LRRC37A/B 48.2 36 0.00079 26.0 4.1 21 224-244 120-140 (154)
143 PF15048 OSTbeta: Organic solu 47.5 36 0.00078 25.2 3.9 9 224-232 35-43 (125)
144 PF13314 DUF4083: Domain of un 47.3 55 0.0012 20.7 4.2 13 240-252 21-33 (58)
145 KOG3763 mRNA export factor TAP 47.3 12 0.00026 35.0 1.8 62 118-181 217-284 (585)
146 PF02699 YajC: Preprotein tran 46.8 14 0.00031 25.2 1.7 7 247-253 19-25 (82)
147 COG1862 YajC Preprotein transl 46.1 12 0.00026 26.6 1.2 13 244-256 23-35 (97)
148 PF02529 PetG: Cytochrome B6-F 45.9 56 0.0012 18.6 3.7 21 227-247 7-27 (37)
149 cd01324 cbb3_Oxidase_CcoQ Cyto 45.7 39 0.00085 20.5 3.3 12 240-251 21-32 (48)
150 PF00558 Vpu: Vpu protein; In 45.2 34 0.00073 23.4 3.3 12 224-235 7-18 (81)
151 TIGR02976 phageshock_pspB phag 44.3 47 0.001 22.4 3.8 11 240-250 17-27 (75)
152 PF15345 TMEM51: Transmembrane 43.0 21 0.00045 29.5 2.3 8 231-238 65-72 (233)
153 PF15099 PIRT: Phosphoinositid 42.0 12 0.00026 27.7 0.8 8 223-230 79-86 (129)
154 PF05510 Sarcoglycan_2: Sarcog 41.7 44 0.00096 30.0 4.4 7 43-49 62-68 (386)
155 PF06667 PspB: Phage shock pro 41.6 59 0.0013 21.9 4.0 10 240-249 17-26 (75)
156 TIGR00864 PCC polycystin catio 40.9 21 0.00045 39.9 2.6 32 101-132 1-32 (2740)
157 PF14851 FAM176: FAM176 family 40.7 34 0.00073 26.5 3.1 6 238-243 37-42 (153)
158 PF03229 Alpha_GJ: Alphavirus 39.7 52 0.0011 24.0 3.7 13 225-237 84-96 (126)
159 PF06040 Adeno_E3: Adenovirus 39.6 20 0.00043 26.0 1.6 11 242-252 114-124 (127)
160 PHA03099 epidermal growth fact 38.7 49 0.0011 24.7 3.5 35 223-257 97-131 (139)
161 TIGR01433 CyoA cytochrome o ub 38.0 21 0.00046 29.6 1.7 14 240-253 47-60 (226)
162 CHL00008 petG cytochrome b6/f 37.3 80 0.0017 17.9 3.6 22 227-248 7-28 (37)
163 KOG4308 LRR-containing protein 36.9 1.3 2.8E-05 41.0 -6.1 112 70-181 171-304 (478)
164 PF02038 ATP1G1_PLM_MAT8: ATP1 36.8 41 0.0009 20.6 2.4 6 226-231 16-21 (50)
165 PRK09458 pspB phage shock prot 34.8 73 0.0016 21.4 3.5 15 239-253 16-30 (75)
166 PRK00665 petG cytochrome b6-f 34.4 91 0.002 17.6 3.6 21 227-247 7-27 (37)
167 PF10873 DUF2668: Protein of u 34.4 49 0.0011 25.2 3.0 27 225-251 66-92 (155)
168 PF06679 DUF1180: Protein of u 34.3 52 0.0011 25.8 3.3 27 225-252 98-124 (163)
169 KOG1094 Discoidin domain recep 34.2 39 0.00084 32.3 2.9 23 6-28 4-26 (807)
170 PF05393 Hum_adeno_E3A: Human 33.9 81 0.0018 21.8 3.7 22 232-253 42-63 (94)
171 PF10954 DUF2755: Protein of u 33.9 80 0.0017 21.9 3.7 8 243-250 91-98 (100)
172 PF14575 EphA2_TM: Ephrin type 33.2 61 0.0013 21.7 3.1 23 233-255 6-28 (75)
173 PF12259 DUF3609: Protein of u 32.2 25 0.00053 31.4 1.3 14 240-253 314-327 (361)
174 PF05083 LST1: LST-1 protein; 31.1 37 0.0008 22.3 1.6 6 247-252 17-22 (74)
175 PRK13718 conjugal transfer pro 30.4 1.1E+02 0.0024 20.7 3.8 11 250-260 70-80 (84)
176 PRK10525 cytochrome o ubiquino 30.4 29 0.00063 30.3 1.5 24 230-253 49-72 (315)
177 COG1622 CyoA Heme/copper-type 29.8 84 0.0018 26.4 4.0 15 239-253 48-62 (247)
178 PF11431 Transport_MerF: Membr 29.1 54 0.0012 19.7 2.0 9 244-252 36-44 (46)
179 TIGR03521 GldG gliding-associa 29.1 56 0.0012 31.0 3.2 12 24-35 249-260 (552)
180 PF11980 DUF3481: Domain of un 29.0 79 0.0017 21.7 3.0 10 242-251 35-44 (87)
181 PF04478 Mid2: Mid2 like cell 28.9 8.6 0.00019 29.6 -1.8 35 217-252 46-80 (154)
182 KOG3653 Transforming growth fa 28.5 3.3E+02 0.0071 25.5 7.7 30 224-253 154-183 (534)
183 smart00367 LRR_CC Leucine-rich 28.3 38 0.00083 17.1 1.2 10 168-177 3-12 (26)
184 PF11857 DUF3377: Domain of un 28.3 32 0.00069 23.0 1.0 13 243-255 48-60 (74)
185 PHA03291 envelope glycoprotein 27.9 35 0.00076 30.0 1.5 16 221-236 283-298 (401)
186 PF01299 Lamp: Lysosome-associ 27.8 28 0.0006 30.2 0.9 18 221-238 271-288 (306)
187 PF09835 DUF2062: Uncharacteri 27.2 85 0.0018 24.0 3.5 13 242-254 140-152 (154)
188 KOG3637 Vitronectin receptor, 26.0 64 0.0014 33.1 3.1 16 221-236 976-991 (1030)
189 PF10389 CoatB: Bacteriophage 26.0 1.6E+02 0.0034 17.8 3.6 13 239-251 32-44 (46)
190 PF01708 Gemini_mov: Geminivir 25.7 88 0.0019 21.8 2.8 6 250-255 67-72 (91)
191 KOG4482 Sarcoglycan complex, a 25.5 1E+02 0.0022 27.6 3.8 7 43-49 68-74 (449)
192 PF12301 CD99L2: CD99 antigen 25.2 1E+02 0.0022 24.3 3.6 8 223-230 114-121 (169)
193 PF02404 SCF: Stem cell factor 24.7 25 0.00053 29.6 0.0 13 25-37 35-47 (273)
194 PHA03265 envelope glycoprotein 24.4 73 0.0016 28.1 2.8 39 219-257 346-384 (402)
195 PF14654 Epiglycanin_C: Mucin, 24.4 1.8E+02 0.0039 20.6 4.2 17 220-236 14-30 (106)
196 PF15330 SIT: SHP2-interacting 24.3 1.9E+02 0.004 20.9 4.5 21 237-257 14-34 (107)
197 PF02060 ISK_Channel: Slow vol 24.3 1.2E+02 0.0027 22.5 3.6 17 237-253 56-72 (129)
198 PTZ00087 thrombosponding-relat 23.9 83 0.0018 26.7 2.9 20 221-240 293-312 (340)
199 KOG1219 Uncharacterized conser 23.6 68 0.0015 36.0 2.8 18 243-260 4011-4028(4289)
200 PF03988 DUF347: Repeat of Unk 23.1 1.5E+02 0.0032 18.4 3.4 6 246-251 45-50 (55)
201 KOG2952 Cell cycle control pro 22.8 1.2E+02 0.0026 26.8 3.8 28 221-248 308-335 (351)
202 PF14979 TMEM52: Transmembrane 22.6 2E+02 0.0043 22.1 4.4 31 221-252 20-50 (154)
203 KOG3251 Golgi SNAP receptor co 22.4 1E+02 0.0022 25.2 3.1 12 238-249 201-212 (213)
204 PF10669 Phage_Gp23: Protein g 22.0 86 0.0019 22.1 2.2 12 240-251 30-41 (121)
205 PF04906 Tweety: Tweety; Inte 21.2 1.1E+02 0.0023 27.9 3.4 35 224-258 23-57 (406)
206 PF14914 LRRC37AB_C: LRRC37A/B 20.6 1.7E+02 0.0036 22.5 3.7 7 242-248 134-140 (154)
207 KOG4550 Predicted membrane pro 20.1 73 0.0016 29.0 2.0 14 239-252 575-588 (606)
No 1
>PLN03150 hypothetical protein; Provisional
Probab=99.90 E-value=2.9e-23 Score=195.36 Aligned_cols=203 Identities=33% Similarity=0.523 Sum_probs=128.8
Q ss_pred CCChhHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeecCCCeEEEEeeCCCccccCCccCcCCCCCCEE
Q 024632 21 SSDPNDEACLTHLSQSLKDPYKNLQNWTKSTFSNACNGFTSYLPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSL 100 (265)
Q Consensus 21 ~~~~~~~~~l~~~~~~l~~~~~~~~~w~~~~~~~~c~~~~~~~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L 100 (265)
.+.++|.++|..+|..+..+.. .+|.+ ++|......|.|+.|..... . ....++.|
T Consensus 368 ~t~~~~~~aL~~~k~~~~~~~~--~~W~g----~~C~p~~~~w~Gv~C~~~~~----------~--------~~~~v~~L 423 (623)
T PLN03150 368 KTLLEEVSALQTLKSSLGLPLR--FGWNG----DPCVPQQHPWSGADCQFDST----------K--------GKWFIDGL 423 (623)
T ss_pred ccCchHHHHHHHHHHhcCCccc--CCCCC----CCCCCcccccccceeeccCC----------C--------CceEEEEE
Confidence 4566889999999999876542 47964 57754444699999953110 0 00124556
Q ss_pred ECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEEEccCccCcccCChhccCCCCCCEEEcccCCCC
Q 024632 101 DLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLS 180 (265)
Q Consensus 101 ~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~ 180 (265)
+|++|.+.|.+|..+..+++|+.|+|++|.++|.+|..++.+++|+.|+|++|+++|.+|+.++.+++|+.|++++|+++
T Consensus 424 ~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~ 503 (623)
T PLN03150 424 GLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLS 503 (623)
T ss_pred ECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCccc
Confidence 66666666666666666777777777777777777777777777777777777777777777777777888888888888
Q ss_pred CCCChhhhccCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024632 181 GPIPASLGNRSGNLPKFNASSFEGNKDLYGYPL-PPMKSKGLSVLAIVGIGLGSGFASLVISFTGVCIWLKV 251 (265)
Q Consensus 181 g~~p~~~~~~~~~l~~l~~~~~~~N~~~c~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (265)
|.+|..+... ...+..+++.+|+.+|+.|. +.|. .......+++++++++++++++++..+++|+||
T Consensus 504 g~iP~~l~~~---~~~~~~l~~~~N~~lc~~p~l~~C~-~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~r 571 (623)
T PLN03150 504 GRVPAALGGR---LLHRASFNFTDNAGLCGIPGLRACG-PHLSVGAKIGIAFGVSVAFLFLVICAMCWWKRR 571 (623)
T ss_pred ccCChHHhhc---cccCceEEecCCccccCCCCCCCCc-ccCCCceEEEEEhHHHHHHHHHHHHHhhheeeh
Confidence 7888776652 23345667889999998753 3332 222333344444444333333333334444444
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.87 E-value=3.1e-21 Score=190.96 Aligned_cols=175 Identities=33% Similarity=0.590 Sum_probs=125.5
Q ss_pred CCCCChhHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeec-CCCeEEEEeeCCCccccCCccCcCCCCC
Q 024632 19 LCSSDPNDEACLTHLSQSLKDPYKNLQNWTKSTFSNACNGFTSYLPGATCN-NGRIYKLSLTNLSLQGSISPYLSNCTNL 97 (265)
Q Consensus 19 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~w~~~~~~~~c~~~~~~~~~~~~~-~~~l~~L~L~~n~l~~~~p~~l~~l~~L 97 (265)
.+...++|.++|.+||+.+.+|.....+|+.. .++|. |.|+.|. ..+++.|++++|.+++.++..+..+++|
T Consensus 23 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~--~~~c~-----w~gv~c~~~~~v~~L~L~~~~i~~~~~~~~~~l~~L 95 (968)
T PLN00113 23 FSMLHAEELELLLSFKSSINDPLKYLSNWNSS--ADVCL-----WQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYI 95 (968)
T ss_pred ccCCCHHHHHHHHHHHHhCCCCcccCCCCCCC--CCCCc-----CcceecCCCCcEEEEEecCCCccccCChHHhCCCCC
Confidence 34446789999999999998887788999753 36775 9999996 5789999999999998888888899999
Q ss_pred CEEECcCCCCCCCCCCCcc-cCcccceeccccccCCCCCchHhhhCCcCCEEEccCccCcccCChhccCCCCCCEEEccc
Q 024632 98 QSLDLSSNALTGSIPADLQ-YLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSN 176 (265)
Q Consensus 98 ~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~ 176 (265)
+.|++++|++++.+|..+. .+++|++|++++|.+++.+|. +.+++|++|++++|.+++.+|..++.+++|++|++++
T Consensus 96 ~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~ 173 (968)
T PLN00113 96 QTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGG 173 (968)
T ss_pred CEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECcc
Confidence 9999999999888887654 677777777777777665553 2355566666666666555555555555666666666
Q ss_pred CCCCCCCChhhhccCCCCCCCCCCCCCCCC
Q 024632 177 NKLSGPIPASLGNRSGNLPKFNASSFEGNK 206 (265)
Q Consensus 177 N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~ 206 (265)
|.+.+.+|..+.+ ++.|+.+++++|.
T Consensus 174 n~l~~~~p~~~~~----l~~L~~L~L~~n~ 199 (968)
T PLN00113 174 NVLVGKIPNSLTN----LTSLEFLTLASNQ 199 (968)
T ss_pred CcccccCChhhhh----CcCCCeeeccCCC
Confidence 6555555555544 4444445554443
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.86 E-value=1.6e-21 Score=192.98 Aligned_cols=137 Identities=36% Similarity=0.594 Sum_probs=101.9
Q ss_pred CCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEEEc
Q 024632 71 GRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDL 150 (265)
Q Consensus 71 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 150 (265)
++|+.|++++|++++.+|..+..+++|+.|++++|.+.+.+|+.+..+++|++|++++|.+++.+|..+..+++|+.|++
T Consensus 475 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 554 (968)
T PLN00113 475 KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDL 554 (968)
T ss_pred ccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEEC
Confidence 55667777777777677777777777777777777777777777777777777777777777777777777777777777
Q ss_pred cCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCCCCCCCC
Q 024632 151 HDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKDLYGYP 212 (265)
Q Consensus 151 s~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~~~c~~~ 212 (265)
++|+++|.+|..+..+++|+.+++++|+++|.+|.. +.+..+....+.||+.+|+.+
T Consensus 555 s~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~-----~~~~~~~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 555 SQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST-----GAFLAINASAVAGNIDLCGGD 611 (968)
T ss_pred CCCcccccCChhHhcCcccCEEeccCCcceeeCCCc-----chhcccChhhhcCCccccCCc
Confidence 777777777777777777777777777777777753 224556677889999999854
No 4
>PLN03150 hypothetical protein; Provisional
Probab=99.64 E-value=1.6e-15 Score=143.05 Aligned_cols=111 Identities=34% Similarity=0.515 Sum_probs=103.2
Q ss_pred CeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEEEcc
Q 024632 72 RIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLH 151 (265)
Q Consensus 72 ~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 151 (265)
.++.|+|++|.+.|.+|..+..+++|+.|+|++|.+.|.+|..+..+++|+.|+|++|.++|.+|+.++++++|+.|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCcccCChhccCC-CCCCEEEcccCCCCCC
Q 024632 152 DNLLTGQIPQQLGLL-VRLSAFDVSNNKLSGP 182 (265)
Q Consensus 152 ~N~l~~~~p~~~~~l-~~L~~L~l~~N~l~g~ 182 (265)
+|+++|.+|..++.+ .++..+++.+|...+.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~ 530 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCG 530 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccC
Confidence 999999999988764 4677899999876543
No 5
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.58 E-value=6.3e-17 Score=124.90 Aligned_cols=136 Identities=24% Similarity=0.436 Sum_probs=104.9
Q ss_pred CCceeecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCC-CCCchHhhh
Q 024632 63 LPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLA-GEIPPQLTL 141 (265)
Q Consensus 63 ~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~~~p~~~~~ 141 (265)
.|..+.++.+++.|++++|+++ .+|..++.++.|+.|++..|++. .+|..|+.++.|+.|||++|.+. ..+|..|..
T Consensus 48 vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl~e~~lpgnff~ 125 (264)
T KOG0617|consen 48 VPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFY 125 (264)
T ss_pred cCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhccccccccccCCcchhH
Confidence 4555556778888888888887 67777888888888888888877 77888888888888888887774 356777777
Q ss_pred CCcCCEEEccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCC
Q 024632 142 CAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNK 206 (265)
Q Consensus 142 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~ 206 (265)
+..|+.|++++|.|. .+|..++.+++|+.|.+..|.+- .+|..++. +..+..+.+.||.
T Consensus 126 m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~----lt~lrelhiqgnr 184 (264)
T KOG0617|consen 126 MTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGD----LTRLRELHIQGNR 184 (264)
T ss_pred HHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHH----HHHHHHHhcccce
Confidence 777788888888887 77777888888888888888776 67887777 6667777777775
No 6
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.54 E-value=1.2e-16 Score=123.43 Aligned_cols=137 Identities=29% Similarity=0.490 Sum_probs=124.4
Q ss_pred CCceeecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhC
Q 024632 63 LPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLC 142 (265)
Q Consensus 63 ~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l 142 (265)
.++.+ ++++++.|.|++|.++ .+|+.+..+.+|+.|++++|+++ .+|..+..+++|+.|++.-|++. .+|..|+.+
T Consensus 26 ~~gLf-~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~ 101 (264)
T KOG0617|consen 26 LPGLF-NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSF 101 (264)
T ss_pred ccccc-chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCC
Confidence 44444 5788899999999999 78889999999999999999999 89999999999999999999998 899999999
Q ss_pred CcCCEEEccCccCc-ccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCCCC
Q 024632 143 AYLNVIDLHDNLLT-GQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKDL 208 (265)
Q Consensus 143 ~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~~~ 208 (265)
+.|+.||+++|++. ..+|..|..+..|+.|+++.|.|. .+|..+++ +.+++.+.+.+|..+
T Consensus 102 p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~----lt~lqil~lrdndll 163 (264)
T KOG0617|consen 102 PALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGK----LTNLQILSLRDNDLL 163 (264)
T ss_pred chhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhh----hcceeEEeeccCchh
Confidence 99999999999986 368999999999999999999998 88999888 888888889888754
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.46 E-value=6.8e-15 Score=132.09 Aligned_cols=140 Identities=24% Similarity=0.250 Sum_probs=77.5
Q ss_pred CceeecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCC
Q 024632 64 PGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCA 143 (265)
Q Consensus 64 ~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 143 (265)
.|+|..+.++++|+|+.|+++..-...+.+++.|+.|++|+|.|...-++.+....+|++|+|++|+++...++++..+.
T Consensus 262 DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~ 341 (873)
T KOG4194|consen 262 DGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLS 341 (873)
T ss_pred CcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHH
Confidence 45555566666666666666644444556666666666666666655555566666666666666666644444554444
Q ss_pred cC------------------------CEEEccCccCcccCCh---hccCCCCCCEEEcccCCCCCCCChhhhccCCCCCC
Q 024632 144 YL------------------------NVIDLHDNLLTGQIPQ---QLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPK 196 (265)
Q Consensus 144 ~L------------------------~~L~Ls~N~l~~~~p~---~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~ 196 (265)
.| ++|||++|.+++.+.+ .|..+++|+.|++.+|++...--.+|.+ ++.
T Consensus 342 ~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsg----l~~ 417 (873)
T KOG4194|consen 342 QLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSG----LEA 417 (873)
T ss_pred HhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhcc----Ccc
Confidence 44 4445555544443322 2344555555555555554222223333 666
Q ss_pred CCCCCCCCCCC
Q 024632 197 FNASSFEGNKD 207 (265)
Q Consensus 197 l~~~~~~~N~~ 207 (265)
|+.+++.+|+.
T Consensus 418 LE~LdL~~Nai 428 (873)
T KOG4194|consen 418 LEHLDLGDNAI 428 (873)
T ss_pred cceecCCCCcc
Confidence 77777777763
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.45 E-value=7.9e-15 Score=131.66 Aligned_cols=145 Identities=21% Similarity=0.208 Sum_probs=110.6
Q ss_pred CceeecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCccc------------------------Cc
Q 024632 64 PGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQY------------------------LV 119 (265)
Q Consensus 64 ~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~------------------------l~ 119 (265)
.|..-+++.|+.|+|++|.|...-++.+...+.|++|||++|+++...+..|.. +.
T Consensus 286 ~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~ls 365 (873)
T KOG4194|consen 286 EGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLS 365 (873)
T ss_pred cccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhh
Confidence 344446777888888888887666777777888888888888877443444433 45
Q ss_pred ccceeccccccCCCCCc---hHhhhCCcCCEEEccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCC
Q 024632 120 NLAVLNLSANRLAGEIP---PQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPK 196 (265)
Q Consensus 120 ~L~~L~Ls~N~l~~~~p---~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~ 196 (265)
+|+.|||++|.+++.+- ..|.++++|+.|++.+|++...--..|..+..|++|||.+|.+...-|.+|.. + +
T Consensus 366 sL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~----m-~ 440 (873)
T KOG4194|consen 366 SLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEP----M-E 440 (873)
T ss_pred hhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeeccccccc----c-h
Confidence 56666666666665443 24677999999999999999444467899999999999999999888888877 5 7
Q ss_pred CCCCCCCCCCCCCCCCC
Q 024632 197 FNASSFEGNKDLYGYPL 213 (265)
Q Consensus 197 l~~~~~~~N~~~c~~~~ 213 (265)
|+.+.+....++|+|.+
T Consensus 441 Lk~Lv~nSssflCDCql 457 (873)
T KOG4194|consen 441 LKELVMNSSSFLCDCQL 457 (873)
T ss_pred hhhhhhcccceEEeccH
Confidence 78888888889999865
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.36 E-value=1.1e-13 Score=119.44 Aligned_cols=125 Identities=32% Similarity=0.435 Sum_probs=72.9
Q ss_pred EEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEEEccCcc
Q 024632 75 KLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNL 154 (265)
Q Consensus 75 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 154 (265)
.+.+++|.+. .+|..++.+++|..|+|++|-+. .+|..++.+..||.||++.|+|. .+|..+..+..++++-.++|+
T Consensus 416 ~l~lsnn~is-fv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nq 492 (565)
T KOG0472|consen 416 DLVLSNNKIS-FVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQ 492 (565)
T ss_pred HHHhhcCccc-cchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhcccc
Confidence 3444555444 55666666666666666666665 56666666666666666666665 556555555555555555566
Q ss_pred CcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCCC
Q 024632 155 LTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKD 207 (265)
Q Consensus 155 l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~~ 207 (265)
+...-|+.+.++.+|..||+.+|.+. .+|+.+++ +.++.++.+.|||+
T Consensus 493 i~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~Lgn----mtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 493 IGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGN----MTNLRHLELDGNPF 540 (565)
T ss_pred ccccChHHhhhhhhcceeccCCCchh-hCChhhcc----ccceeEEEecCCcc
Confidence 65333444566666666666666665 55665555 55555666666654
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.35 E-value=2.1e-13 Score=123.75 Aligned_cols=136 Identities=31% Similarity=0.458 Sum_probs=109.2
Q ss_pred CCceeecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCC-cccCcccceeccccccCCCCCchHhhh
Q 024632 63 LPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPAD-LQYLVNLAVLNLSANRLAGEIPPQLTL 141 (265)
Q Consensus 63 ~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~~~p~~~~~ 141 (265)
+|..+-.+..|+.|||++|+++ .+|..+..-.++-.|+||+|+|. .+|.. +-+++.|-+||||+|++. .+|+.+..
T Consensus 95 iP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RR 171 (1255)
T KOG0444|consen 95 IPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRR 171 (1255)
T ss_pred CCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-hcCHHHHH
Confidence 5666667889999999999998 78888888899999999999998 67755 567888899999999998 77888888
Q ss_pred CCcCCEEEccCccCcc-------------------------cCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCC
Q 024632 142 CAYLNVIDLHDNLLTG-------------------------QIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPK 196 (265)
Q Consensus 142 l~~L~~L~Ls~N~l~~-------------------------~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~ 196 (265)
+..|++|+|++|.+.. .+|..+..+.+|..+|+|.|.+. .+|+.+.+ +++
T Consensus 172 L~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~----l~~ 246 (1255)
T KOG0444|consen 172 LSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYK----LRN 246 (1255)
T ss_pred HhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhh----hhh
Confidence 8888888888885431 35666677777888888888887 77887776 666
Q ss_pred CCCCCCCCCC
Q 024632 197 FNASSFEGNK 206 (265)
Q Consensus 197 l~~~~~~~N~ 206 (265)
|..+++++|.
T Consensus 247 LrrLNLS~N~ 256 (1255)
T KOG0444|consen 247 LRRLNLSGNK 256 (1255)
T ss_pred hheeccCcCc
Confidence 6667777765
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.30 E-value=1.6e-13 Score=118.58 Aligned_cols=117 Identities=28% Similarity=0.377 Sum_probs=101.3
Q ss_pred CCCCceeecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhh
Q 024632 61 SYLPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLT 140 (265)
Q Consensus 61 ~~~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~ 140 (265)
++.|...|.++++..|+|++|-+. .+|.+++.+..|+.||+++|+|. .+|+.+..+..++.+-.++|++....|+.++
T Consensus 425 sfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~ 502 (565)
T KOG0472|consen 425 SFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLK 502 (565)
T ss_pred ccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhh
Confidence 334556678889999999999888 78999999999999999999998 8888877777777777788999866666699
Q ss_pred hCCcCCEEEccCccCcccCChhccCCCCCCEEEcccCCCC
Q 024632 141 LCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLS 180 (265)
Q Consensus 141 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~ 180 (265)
+|.+|.+||+.+|.+. .+|..++++++|++|++.+|+|+
T Consensus 503 nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 503 NMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred hhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 9999999999999999 88889999999999999999998
No 12
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.29 E-value=3.7e-13 Score=115.95 Aligned_cols=52 Identities=27% Similarity=0.267 Sum_probs=39.0
Q ss_pred CCCCCCCCceeecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcC-CCCC
Q 024632 57 NGFTSYLPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSS-NALT 108 (265)
Q Consensus 57 ~~~~~~~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~-N~l~ 108 (265)
|.+....++.|..+++|+.|||++|.|+..-|+.|.+++++..|.+.+ |+|+
T Consensus 77 N~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~ 129 (498)
T KOG4237|consen 77 NQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT 129 (498)
T ss_pred CCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh
Confidence 556666678888899999999999998866677777777766655444 6655
No 13
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.27 E-value=3.2e-13 Score=122.48 Aligned_cols=142 Identities=26% Similarity=0.382 Sum_probs=86.3
Q ss_pred CCceeecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhC
Q 024632 63 LPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLC 142 (265)
Q Consensus 63 ~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l 142 (265)
+|..+-++.+|..+|++.|.+. .+|+.+.++++|+.|+||+|.++ .+.-..+...+|++|++|+|+++ .+|+.+.++
T Consensus 214 ~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL 290 (1255)
T KOG0444|consen 214 IPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKL 290 (1255)
T ss_pred CCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhh
Confidence 5555556666666677766666 56666666666666666666666 44444455556666666666665 555555555
Q ss_pred CcCCEEEccCccCcc-cCChhccCCCCC-----------------------CEEEcccCCCCCCCChhhhccCCCCCCCC
Q 024632 143 AYLNVIDLHDNLLTG-QIPQQLGLLVRL-----------------------SAFDVSNNKLSGPIPASLGNRSGNLPKFN 198 (265)
Q Consensus 143 ~~L~~L~Ls~N~l~~-~~p~~~~~l~~L-----------------------~~L~l~~N~l~g~~p~~~~~~~~~l~~l~ 198 (265)
+.|+.|++.+|+++- -+|+.++.+.+| +.|.|+.|++- .+|+.+.- ++.++
T Consensus 291 ~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLi-TLPeaIHl----L~~l~ 365 (1255)
T KOG0444|consen 291 TKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHL----LPDLK 365 (1255)
T ss_pred HHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhccccccee-echhhhhh----cCCcc
Confidence 555555555555431 244445555444 45555555544 44554443 77888
Q ss_pred CCCCCCCCCCCCCC
Q 024632 199 ASSFEGNKDLYGYP 212 (265)
Q Consensus 199 ~~~~~~N~~~c~~~ 212 (265)
.+++..||.+--+|
T Consensus 366 vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 366 VLDLRENPNLVMPP 379 (1255)
T ss_pred eeeccCCcCccCCC
Confidence 99999999876443
No 14
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.25 E-value=4.1e-13 Score=120.36 Aligned_cols=133 Identities=30% Similarity=0.461 Sum_probs=108.9
Q ss_pred CCceeecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhC
Q 024632 63 LPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLC 142 (265)
Q Consensus 63 ~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l 142 (265)
.|...|++..++++||+.|+++ .+|..+..++ |+.|-+++|+++ .+|+.++.+.+|..||.+.|.+. .+|..++.+
T Consensus 113 ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l 188 (722)
T KOG0532|consen 113 IPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYL 188 (722)
T ss_pred cchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhH
Confidence 6777778888888888888888 7788777776 788888888888 88888888888888888888888 778888888
Q ss_pred CcCCEEEccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCC
Q 024632 143 AYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNK 206 (265)
Q Consensus 143 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~ 206 (265)
.+|+.|++..|++. .+|.++..++ |..||++.|+++ .+|..|.+ |..|..+.+++||
T Consensus 189 ~slr~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNkis-~iPv~fr~----m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 189 TSLRDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNKIS-YLPVDFRK----MRHLQVLQLENNP 245 (722)
T ss_pred HHHHHHHHhhhhhh-hCCHHHhCCc-eeeeecccCcee-ecchhhhh----hhhheeeeeccCC
Confidence 88888888888887 6777777554 778888888887 78888877 7778888888887
No 15
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.23 E-value=6.6e-13 Score=124.73 Aligned_cols=129 Identities=35% Similarity=0.491 Sum_probs=107.6
Q ss_pred CCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCC-cccCcccceeccccccCCCCCchHhhhCCcCCEE
Q 024632 70 NGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPAD-LQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVI 148 (265)
Q Consensus 70 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 148 (265)
...|+.|++.+|.++...-+.+.+..+|+.|+|++|++. .+|.. +.++..|+.|+||+|+++ .+|..+..++.|++|
T Consensus 358 ~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL 435 (1081)
T KOG0618|consen 358 HAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTL 435 (1081)
T ss_pred hHHHHHHHHhcCcccccchhhhccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHH
Confidence 456888999999998777677888999999999999998 66654 778999999999999999 888999999999999
Q ss_pred EccCccCcccCChhccCCCCCCEEEcccCCCCCC-CChhhhccCCCCCCCCCCCCCCCCC
Q 024632 149 DLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGP-IPASLGNRSGNLPKFNASSFEGNKD 207 (265)
Q Consensus 149 ~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~-~p~~~~~~~~~l~~l~~~~~~~N~~ 207 (265)
...+|++. ..| ++..++.|+.+|++.|+++.. +|...- -++|+.++++||++
T Consensus 436 ~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p-----~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 436 RAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALP-----SPNLKYLDLSGNTR 488 (1081)
T ss_pred hhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCC-----CcccceeeccCCcc
Confidence 99999998 788 788999999999999998743 333211 25788888999885
No 16
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.18 E-value=2.2e-11 Score=96.48 Aligned_cols=127 Identities=24% Similarity=0.260 Sum_probs=50.1
Q ss_pred CCCeEEEEeeCCCccccCCccCc-CCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHh-hhCCcCCE
Q 024632 70 NGRIYKLSLTNLSLQGSISPYLS-NCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQL-TLCAYLNV 147 (265)
Q Consensus 70 ~~~l~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~ 147 (265)
..++++|+|.+|.|+ .+. .++ .+.+|+.|++++|.++ .++ .+..++.|++|++++|+++ .+.+.+ ..+++|++
T Consensus 18 ~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 18 PVKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQE 92 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT--E
T ss_pred ccccccccccccccc-ccc-chhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCCE
Confidence 346789999999998 443 465 5789999999999999 554 5788999999999999999 555555 46899999
Q ss_pred EEccCccCcccC-ChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCC
Q 024632 148 IDLHDNLLTGQI-PQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSF 202 (265)
Q Consensus 148 L~Ls~N~l~~~~-p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~ 202 (265)
|++++|+|...- -..+..+++|+.|++.+|+++. .+..-......+|+++.+|.
T Consensus 93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~-~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCE-KKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGG-STTHHHHHHHH-TT-SEETT
T ss_pred EECcCCcCCChHHhHHHHcCCCcceeeccCCcccc-hhhHHHHHHHHcChhheeCC
Confidence 999999997421 1456788999999999999973 34321111122666666654
No 17
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.04 E-value=2e-11 Score=102.29 Aligned_cols=129 Identities=25% Similarity=0.329 Sum_probs=101.3
Q ss_pred CCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEEE
Q 024632 70 NGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVID 149 (265)
Q Consensus 70 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 149 (265)
.+.|+++||++|.|+ .+..+..-.+.++.|++|+|.+. .+. .+..+++|+.||||+|.++ .+-..-.++.+.++|.
T Consensus 283 Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~-nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 283 WQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQ-NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLK 358 (490)
T ss_pred Hhhhhhccccccchh-hhhhhhhhccceeEEecccccee-eeh-hhhhcccceEeecccchhH-hhhhhHhhhcCEeeee
Confidence 467889999999998 67788888899999999999988 444 4888999999999999988 5666667788899999
Q ss_pred ccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCCC
Q 024632 150 LHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKD 207 (265)
Q Consensus 150 Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~~ 207 (265)
|+.|.+. .+ +.++.+-+|..||+++|++.. +- .... .+++|.++.+.+.+||.
T Consensus 359 La~N~iE-~L-SGL~KLYSLvnLDl~~N~Ie~-ld-eV~~-IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 359 LAQNKIE-TL-SGLRKLYSLVNLDLSSNQIEE-LD-EVNH-IGNLPCLETLRLTGNPL 411 (490)
T ss_pred hhhhhHh-hh-hhhHhhhhheeccccccchhh-HH-Hhcc-cccccHHHHHhhcCCCc
Confidence 9999887 33 346777888999999998862 21 1111 34588899999999984
No 18
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.04 E-value=2.1e-11 Score=105.34 Aligned_cols=139 Identities=19% Similarity=0.186 Sum_probs=117.7
Q ss_pred CeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceecccc-ccCCCCCchHhhhCCcCCEEEc
Q 024632 72 RIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSA-NRLAGEIPPQLTLCAYLNVIDL 150 (265)
Q Consensus 72 ~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~L 150 (265)
..+.|+|..|+|+...|..|+.+++|+.||||+|+|+..-|..|..+.++..|-+-+ |+|+......|+++.+|+.|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 457899999999966677899999999999999999977788899999888776666 9999655667899999999999
Q ss_pred cCccCcccCChhccCCCCCCEEEcccCCCCCCCCh-hhhccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 024632 151 HDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPA-SLGNRSGNLPKFNASSFEGNKDLYGYPLPP 215 (265)
Q Consensus 151 s~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~-~~~~~~~~l~~l~~~~~~~N~~~c~~~~~~ 215 (265)
.-|++.-...+.|..+++|..|.+-.|.+. .++. .+.. +..++.+.+..|++.|.|.++.
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~----l~~i~tlhlA~np~icdCnL~w 208 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQG----LAAIKTLHLAQNPFICDCNLPW 208 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccc----hhccchHhhhcCccccccccch
Confidence 999999777788999999999999999987 5554 5555 6777888999999999886654
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.03 E-value=2.9e-10 Score=108.80 Aligned_cols=104 Identities=27% Similarity=0.472 Sum_probs=57.7
Q ss_pred CeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcc-------------------cCcccceeccccccCC
Q 024632 72 RIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQ-------------------YLVNLAVLNLSANRLA 132 (265)
Q Consensus 72 ~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~-------------------~l~~L~~L~Ls~N~l~ 132 (265)
+|++|++++|.++ .+|..+. ++|+.|++++|+++ .+|..+. ..++|+.|++++|.++
T Consensus 263 ~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt 338 (754)
T PRK15370 263 ALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALT 338 (754)
T ss_pred CCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCcccchhhHHHHHhcCCccccCCccccccceeccccCCccc
Confidence 4555666666555 3444332 34555555555554 2222111 1245677777777776
Q ss_pred CCCchHhhhCCcCCEEEccCccCcccCChhccCCCCCCEEEcccCCCCCCCChh
Q 024632 133 GEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPAS 186 (265)
Q Consensus 133 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~ 186 (265)
.+|..+. ++|+.|++++|+++ .+|..+. ++|+.|++++|+++ .+|..
T Consensus 339 -~LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~ 385 (754)
T PRK15370 339 -SLPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPEN 385 (754)
T ss_pred -cCChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHh
Confidence 3555443 56777777777776 4565442 46677777777666 44543
No 20
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.01 E-value=2.2e-10 Score=90.82 Aligned_cols=109 Identities=33% Similarity=0.454 Sum_probs=40.2
Q ss_pred CcCCCCCCEEECcCCCCCCCCCCCcc-cCcccceeccccccCCCCCchHhhhCCcCCEEEccCccCcccCChhc-cCCCC
Q 024632 91 LSNCTNLQSLDLSSNALTGSIPADLQ-YLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQL-GLLVR 168 (265)
Q Consensus 91 l~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~~l~~ 168 (265)
+.+...+++|+|++|.++ .+. .++ .+.+|+.|++++|.++ .++ .+..++.|++|++++|+++ .+++.+ ..+++
T Consensus 15 ~~n~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~ 89 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPN 89 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT
T ss_pred cccccccccccccccccc-ccc-chhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCC-ccccchHHhCCc
Confidence 445567899999999998 553 565 5889999999999998 453 5888999999999999999 555545 46899
Q ss_pred CCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCCC
Q 024632 169 LSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKD 207 (265)
Q Consensus 169 L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~~ 207 (265)
|+.|++++|++... ..+..+ +.++.|+.+++.|||.
T Consensus 90 L~~L~L~~N~I~~l--~~l~~L-~~l~~L~~L~L~~NPv 125 (175)
T PF14580_consen 90 LQELYLSNNKISDL--NELEPL-SSLPKLRVLSLEGNPV 125 (175)
T ss_dssp --EEE-TTS---SC--CCCGGG-GG-TT--EEE-TT-GG
T ss_pred CCEEECcCCcCCCh--HHhHHH-HcCCCcceeeccCCcc
Confidence 99999999999742 223332 2388999999999984
No 21
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.01 E-value=5.4e-11 Score=103.34 Aligned_cols=139 Identities=23% Similarity=0.290 Sum_probs=87.7
Q ss_pred ecCCCeEEEEeeCCCccccCCccCcCCCC---CCEEECcCCCCCC----CCCCCcccC-cccceeccccccCCCC----C
Q 024632 68 CNNGRIYKLSLTNLSLQGSISPYLSNCTN---LQSLDLSSNALTG----SIPADLQYL-VNLAVLNLSANRLAGE----I 135 (265)
Q Consensus 68 ~~~~~l~~L~L~~n~l~~~~p~~l~~l~~---L~~L~Ls~N~l~~----~~p~~l~~l-~~L~~L~Ls~N~l~~~----~ 135 (265)
..+++++.|++++|.+.+..+..+..+.. |++|++++|.+++ .+...+..+ ++|+.|++++|.+++. +
T Consensus 78 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~ 157 (319)
T cd00116 78 TKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEAL 157 (319)
T ss_pred HhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHH
Confidence 34668888888888876544444444444 8888888887763 122234455 7778888888887742 2
Q ss_pred chHhhhCCcCCEEEccCccCccc----CChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCC
Q 024632 136 PPQLTLCAYLNVIDLHDNLLTGQ----IPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNK 206 (265)
Q Consensus 136 p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~ 206 (265)
+..+..+.+|++|++++|.+++. ++..+..+++|+.|++++|.+++.-...+......++.++.+++++|+
T Consensus 158 ~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~ 232 (319)
T cd00116 158 AKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNN 232 (319)
T ss_pred HHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCc
Confidence 33455566788888888877742 333445556788888888877644434343333346677777777765
No 22
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.95 E-value=1.8e-10 Score=103.64 Aligned_cols=120 Identities=28% Similarity=0.463 Sum_probs=106.7
Q ss_pred CCceeecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhC
Q 024632 63 LPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLC 142 (265)
Q Consensus 63 ~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l 142 (265)
.|.-.|.++ |+.|-+++|+++ .+|..++.+..|..||.+.|.+. .+|..++.+.+|+.|.+..|++. .+|..+..+
T Consensus 136 lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L 211 (722)
T KOG0532|consen 136 LPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL 211 (722)
T ss_pred CChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC
Confidence 566667665 788999999999 89999999999999999999998 89999999999999999999999 788888855
Q ss_pred CcCCEEEccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhc
Q 024632 143 AYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGN 189 (265)
Q Consensus 143 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~ 189 (265)
+ |..||++.|+++ .+|-.|..|+.|++|.|.+|.+. ..|..+..
T Consensus 212 p-Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~ 255 (722)
T KOG0532|consen 212 P-LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICE 255 (722)
T ss_pred c-eeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHh
Confidence 4 899999999999 89999999999999999999998 55666543
No 23
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.95 E-value=1.4e-10 Score=109.37 Aligned_cols=110 Identities=31% Similarity=0.407 Sum_probs=94.4
Q ss_pred CCceeecCCCeEEEEeeCCCccccCCc-cCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhh
Q 024632 63 LPGATCNNGRIYKLSLTNLSLQGSISP-YLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTL 141 (265)
Q Consensus 63 ~~~~~~~~~~l~~L~L~~n~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~ 141 (265)
||- +-+.++|+.|+|++|++. .+|. .+.++..|++|+||+|+++ .+|..+..+..|++|...+|++. .+| .+..
T Consensus 376 ~p~-l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~ 450 (1081)
T KOG0618|consen 376 FPV-LVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQ 450 (1081)
T ss_pred hhh-hccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhh
Confidence 543 345789999999999999 5554 5888999999999999999 89999999999999999999998 788 7889
Q ss_pred CCcCCEEEccCccCccc-CChhccCCCCCCEEEcccCC
Q 024632 142 CAYLNVIDLHDNLLTGQ-IPQQLGLLVRLSAFDVSNNK 178 (265)
Q Consensus 142 l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~l~~N~ 178 (265)
++.|+.+|++.|+++.. +|... ..++|++||+++|.
T Consensus 451 l~qL~~lDlS~N~L~~~~l~~~~-p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 451 LPQLKVLDLSCNNLSEVTLPEAL-PSPNLKYLDLSGNT 487 (1081)
T ss_pred cCcceEEecccchhhhhhhhhhC-CCcccceeeccCCc
Confidence 99999999999999843 34332 23899999999997
No 24
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.94 E-value=1.1e-09 Score=104.64 Aligned_cols=123 Identities=28% Similarity=0.340 Sum_probs=63.2
Q ss_pred CCeEEEEeeCCCccccCCc---cCcC----------C----CCCCEEECcCCCCCCCCCCCccc----------------
Q 024632 71 GRIYKLSLTNLSLQGSISP---YLSN----------C----TNLQSLDLSSNALTGSIPADLQY---------------- 117 (265)
Q Consensus 71 ~~l~~L~L~~n~l~~~~p~---~l~~----------l----~~L~~L~Ls~N~l~~~~p~~l~~---------------- 117 (265)
++|+.|++++|.+++ +|. .+.. + .+|+.|++++|+++ .+|.....
T Consensus 302 ~~L~~LdLS~N~L~~-Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls-~LP~lp~~L~~L~Ls~N~L~~LP~ 379 (788)
T PRK15387 302 PGLQELSVSDNQLAS-LPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLA-SLPTLPSELYKLWAYNNRLTSLPA 379 (788)
T ss_pred cccceeECCCCcccc-CCCCcccccccccccCccccccccccccceEecCCCccC-CCCCCCcccceehhhccccccCcc
Confidence 666677777776663 222 1111 1 25777777777777 44432211
Q ss_pred -CcccceeccccccCCCCCchHhhhCCcCCEEEccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCC
Q 024632 118 -LVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPK 196 (265)
Q Consensus 118 -l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~ 196 (265)
..+|+.|++++|.++ .+|.. .++|+.|++++|+++ .+|... .+|+.|++++|+++ .+|..+.+ ++.
T Consensus 380 l~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Ls-sIP~l~---~~L~~L~Ls~NqLt-~LP~sl~~----L~~ 446 (788)
T PRK15387 380 LPSGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLT-SLPMLP---SGLLSLSVYRNQLT-RLPESLIH----LSS 446 (788)
T ss_pred cccccceEEecCCccc-CCCCc---ccCCCEEEccCCcCC-CCCcch---hhhhhhhhccCccc-ccChHHhh----ccC
Confidence 123444444444444 23321 134555555555555 344321 23455556666655 55665555 566
Q ss_pred CCCCCCCCCCCC
Q 024632 197 FNASSFEGNKDL 208 (265)
Q Consensus 197 l~~~~~~~N~~~ 208 (265)
+..+++++|+..
T Consensus 447 L~~LdLs~N~Ls 458 (788)
T PRK15387 447 ETTVNLEGNPLS 458 (788)
T ss_pred CCeEECCCCCCC
Confidence 677777777743
No 25
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.94 E-value=3.7e-10 Score=73.87 Aligned_cols=59 Identities=36% Similarity=0.461 Sum_probs=30.7
Q ss_pred ccceeccccccCCCCCchHhhhCCcCCEEEccCccCcccCChhccCCCCCCEEEcccCC
Q 024632 120 NLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNK 178 (265)
Q Consensus 120 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~ 178 (265)
+|++|++++|+++...+..|.++++|++|++++|.++...|..|..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 44555555555553333445555555555555555554444455555555555555554
No 26
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.93 E-value=2.5e-09 Score=102.50 Aligned_cols=102 Identities=35% Similarity=0.527 Sum_probs=73.7
Q ss_pred CCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEEEc
Q 024632 71 GRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDL 150 (265)
Q Consensus 71 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 150 (265)
+.++.|++++|.++ .+|..+. .+|++|++++|+++ .+|..+. .+|+.|++++|.++ .+|..+. .+|+.|++
T Consensus 199 ~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~L 269 (754)
T PRK15370 199 EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDL 269 (754)
T ss_pred cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEEC
Confidence 46778888888887 5665543 47888888888887 5666543 46888888888887 6676654 47888888
Q ss_pred cCccCcccCChhccCCCCCCEEEcccCCCCCCCCh
Q 024632 151 HDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPA 185 (265)
Q Consensus 151 s~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~ 185 (265)
++|+++ .+|..+. ++|+.|++++|++++ +|.
T Consensus 270 s~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~ 300 (754)
T PRK15370 270 FHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPA 300 (754)
T ss_pred cCCccC-ccccccC--CCCcEEECCCCcccc-Ccc
Confidence 888888 5676553 478888888888873 444
No 27
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.91 E-value=1.3e-10 Score=97.50 Aligned_cols=136 Identities=21% Similarity=0.270 Sum_probs=102.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCceeecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccce
Q 024632 44 LQNWTKSTFSNACNGFTSYLPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAV 123 (265)
Q Consensus 44 ~~~w~~~~~~~~c~~~~~~~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 123 (265)
...|+..+.-|-..+....+.....-.+.++.|++++|++. .+. .+..+++|+.||||+|.++ .+...-..+.++++
T Consensus 280 ~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~-~v~-nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKt 356 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIR-TVQ-NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKT 356 (490)
T ss_pred cchHhhhhhccccccchhhhhhhhhhccceeEEecccccee-eeh-hhhhcccceEeecccchhH-hhhhhHhhhcCEee
Confidence 45676543323222221223333334689999999999998 444 3889999999999999998 56655567899999
Q ss_pred eccccccCCCCCchHhhhCCcCCEEEccCccCccc-CChhccCCCCCCEEEcccCCCCCCCCh
Q 024632 124 LNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQ-IPQQLGLLVRLSAFDVSNNKLSGPIPA 185 (265)
Q Consensus 124 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~l~~N~l~g~~p~ 185 (265)
|.|++|.+. .+ +++.++.+|..||+++|+|... --..++++|.|+++.+.+|++++ +|+
T Consensus 357 L~La~N~iE-~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~-~vd 416 (490)
T KOG1259|consen 357 LKLAQNKIE-TL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG-SVD 416 (490)
T ss_pred eehhhhhHh-hh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc-cch
Confidence 999999997 33 5788899999999999999832 12468999999999999999984 554
No 28
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.90 E-value=5.1e-10 Score=73.20 Aligned_cols=59 Identities=41% Similarity=0.502 Sum_probs=27.8
Q ss_pred CCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEEEccCcc
Q 024632 96 NLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNL 154 (265)
Q Consensus 96 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 154 (265)
+|++|++++|+++...+..|..+++|++|++++|.++...|..|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 34444555554442222334445555555555555543333444555555555555554
No 29
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.88 E-value=7.3e-09 Score=104.61 Aligned_cols=128 Identities=17% Similarity=0.300 Sum_probs=97.4
Q ss_pred CCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEEEc
Q 024632 71 GRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDL 150 (265)
Q Consensus 71 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 150 (265)
++|+.|++++|...+.+|..++++++|+.|++++|..-+.+|..+ .+++|+.|++++|..-..+|.. ..+|+.|++
T Consensus 778 ~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~L 853 (1153)
T PLN03210 778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNL 853 (1153)
T ss_pred ccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeEC
Confidence 578888888887777788888999999999998875444777765 6888999999987654455543 357889999
Q ss_pred cCccCcccCChhccCCCCCCEEEccc-CCCCCCCChhhhccCCCCCCCCCCCCCCCCCC
Q 024632 151 HDNLLTGQIPQQLGLLVRLSAFDVSN-NKLSGPIPASLGNRSGNLPKFNASSFEGNKDL 208 (265)
Q Consensus 151 s~N~l~~~~p~~~~~l~~L~~L~l~~-N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~~~ 208 (265)
++|.++ .+|..+..+++|+.|++++ |++. .+|..+.. ++.++.+++++++.+
T Consensus 854 s~n~i~-~iP~si~~l~~L~~L~L~~C~~L~-~l~~~~~~----L~~L~~L~l~~C~~L 906 (1153)
T PLN03210 854 SRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQ-RVSLNISK----LKHLETVDFSDCGAL 906 (1153)
T ss_pred CCCCCc-cChHHHhcCCCCCEEECCCCCCcC-ccCccccc----ccCCCeeecCCCccc
Confidence 999998 7888889999999999988 4555 56665554 666666666665543
No 30
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.88 E-value=1e-08 Score=103.57 Aligned_cols=124 Identities=20% Similarity=0.327 Sum_probs=69.1
Q ss_pred eEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEEEccC
Q 024632 73 IYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHD 152 (265)
Q Consensus 73 l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 152 (265)
|+.|.+.++.+. .+|..+ ...+|+.|++++|.+. .++..+..+++|+.|+|+++.....+|. +..+++|++|++++
T Consensus 591 Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~ 666 (1153)
T PLN03210 591 LRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSD 666 (1153)
T ss_pred cEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecC
Confidence 444444444444 344443 3456666666666665 5555566666666666666543334553 55566666666666
Q ss_pred ccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCC
Q 024632 153 NLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGN 205 (265)
Q Consensus 153 N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N 205 (265)
|.....+|..++.+++|+.|++++|..-+.+|..+ + ++.|+.+++++|
T Consensus 667 c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~----l~sL~~L~Lsgc 714 (1153)
T PLN03210 667 CSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-N----LKSLYRLNLSGC 714 (1153)
T ss_pred CCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-C----CCCCCEEeCCCC
Confidence 65555666666666666666666654334555433 1 344444444444
No 31
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.85 E-value=2.6e-10 Score=99.02 Aligned_cols=141 Identities=23% Similarity=0.182 Sum_probs=99.0
Q ss_pred eecCCCeEEEEeeCCCccc------cCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcc---cceeccccccCCC----
Q 024632 67 TCNNGRIYKLSLTNLSLQG------SISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVN---LAVLNLSANRLAG---- 133 (265)
Q Consensus 67 ~~~~~~l~~L~L~~n~l~~------~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~---L~~L~Ls~N~l~~---- 133 (265)
....+++++++++++.+.+ .++..+..+++|+.|++++|.+.+..+..+..+.+ |++|++++|.+++
T Consensus 47 l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~ 126 (319)
T cd00116 47 LRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLR 126 (319)
T ss_pred HhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHH
Confidence 3356678899998887762 23445677889999999999987655555555555 9999999998873
Q ss_pred CCchHhhhC-CcCCEEEccCccCccc----CChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCCC
Q 024632 134 EIPPQLTLC-AYLNVIDLHDNLLTGQ----IPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKD 207 (265)
Q Consensus 134 ~~p~~~~~l-~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~~ 207 (265)
.+...+..+ ++|+.|++++|.+++. ++..+..+++|+.|++++|.+++.....+.......+.++.+++++|..
T Consensus 127 ~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i 205 (319)
T cd00116 127 LLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGL 205 (319)
T ss_pred HHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCcc
Confidence 223345566 8899999999998843 3445667788999999999988532222221112256888889988863
No 32
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.84 E-value=3.3e-09 Score=101.49 Aligned_cols=108 Identities=28% Similarity=0.326 Sum_probs=85.0
Q ss_pred CeEEEEeeCCCccccCCccCcC-----------------CCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCC
Q 024632 72 RIYKLSLTNLSLQGSISPYLSN-----------------CTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGE 134 (265)
Q Consensus 72 ~l~~L~L~~n~l~~~~p~~l~~-----------------l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 134 (265)
+|++|+|++|++++ +|....+ ..+|+.|++++|.++ .+|.. .++|+.|++++|.++ .
T Consensus 343 ~Lq~LdLS~N~Ls~-LP~lp~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Ls-s 416 (788)
T PRK15387 343 GLQELSVSDNQLAS-LPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLT-S 416 (788)
T ss_pred ccceEecCCCccCC-CCCCCcccceehhhccccccCcccccccceEEecCCccc-CCCCc---ccCCCEEEccCCcCC-C
Confidence 67788888888773 4432111 135788888888888 56653 367999999999999 5
Q ss_pred CchHhhhCCcCCEEEccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhc
Q 024632 135 IPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGN 189 (265)
Q Consensus 135 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~ 189 (265)
+|... .+|+.|++++|+++ .+|..+..+++|+.+++++|++++..|..+..
T Consensus 417 IP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~ 467 (788)
T PRK15387 417 LPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALRE 467 (788)
T ss_pred CCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHH
Confidence 77643 46888999999999 89999999999999999999999998887754
No 33
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.71 E-value=1e-08 Score=92.02 Aligned_cols=106 Identities=36% Similarity=0.557 Sum_probs=85.3
Q ss_pred CCCeEEEEeeCCCccccCCccCcCCC-CCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEE
Q 024632 70 NGRIYKLSLTNLSLQGSISPYLSNCT-NLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVI 148 (265)
Q Consensus 70 ~~~l~~L~L~~n~l~~~~p~~l~~l~-~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 148 (265)
.+.++.|++.+|.++ .+++....+. +|+.|++++|.+. .+|..+..++.|+.|++++|+++ .+|...+..+.|+.|
T Consensus 115 ~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L 191 (394)
T COG4886 115 LTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNL 191 (394)
T ss_pred ccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhhe
Confidence 456888899999888 6777677774 8999999999988 77777788899999999999988 677766678888889
Q ss_pred EccCccCcccCChhccCCCCCCEEEcccCCC
Q 024632 149 DLHDNLLTGQIPQQLGLLVRLSAFDVSNNKL 179 (265)
Q Consensus 149 ~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l 179 (265)
++++|+++ .+|........|+.+.+++|+.
T Consensus 192 ~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~ 221 (394)
T COG4886 192 DLSGNKIS-DLPPEIELLSALEELDLSNNSI 221 (394)
T ss_pred eccCCccc-cCchhhhhhhhhhhhhhcCCcc
Confidence 99999888 7777666666688888888853
No 34
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.69 E-value=8.5e-09 Score=92.56 Aligned_cols=136 Identities=33% Similarity=0.553 Sum_probs=91.3
Q ss_pred CCceeecCC-CeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhh
Q 024632 63 LPGATCNNG-RIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTL 141 (265)
Q Consensus 63 ~~~~~~~~~-~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~ 141 (265)
.+......+ +++.|++++|.+. .+|..+..+++|+.|++++|++. .+|.....++.|+.|++++|+++ .+|..+..
T Consensus 131 i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~ 207 (394)
T COG4886 131 IPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIEL 207 (394)
T ss_pred Cccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhh
Confidence 444444453 8899999999888 66667888889999999999888 67766657788888888888888 66766555
Q ss_pred CCcCCEEEccCccCcc----------------------cCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCC
Q 024632 142 CAYLNVIDLHDNLLTG----------------------QIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNA 199 (265)
Q Consensus 142 l~~L~~L~Ls~N~l~~----------------------~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~ 199 (265)
...|+++.+++|.+.. .++..++.+++++.|++++|.++ .++. ++. +..++.
T Consensus 208 ~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~-~i~~-~~~----~~~l~~ 281 (394)
T COG4886 208 LSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQIS-SISS-LGS----LTNLRE 281 (394)
T ss_pred hhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceecccccccc-cccc-ccc----cCccCE
Confidence 5557777777663220 12344455555666666666665 3333 333 556666
Q ss_pred CCCCCCCC
Q 024632 200 SSFEGNKD 207 (265)
Q Consensus 200 ~~~~~N~~ 207 (265)
+++++|..
T Consensus 282 L~~s~n~~ 289 (394)
T COG4886 282 LDLSGNSL 289 (394)
T ss_pred EeccCccc
Confidence 66766654
No 35
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.62 E-value=2.8e-09 Score=79.79 Aligned_cols=111 Identities=25% Similarity=0.402 Sum_probs=87.3
Q ss_pred CeEEEEeeCCCccccCCc---cCcCCCCCCEEECcCCCCCCCCCCCccc-CcccceeccccccCCCCCchHhhhCCcCCE
Q 024632 72 RIYKLSLTNLSLQGSISP---YLSNCTNLQSLDLSSNALTGSIPADLQY-LVNLAVLNLSANRLAGEIPPQLTLCAYLNV 147 (265)
Q Consensus 72 ~l~~L~L~~n~l~~~~p~---~l~~l~~L~~L~Ls~N~l~~~~p~~l~~-l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 147 (265)
.+..++|+++.+- .+++ .+....+|+..+|++|.+. .+|+.|.. .+.++.+++++|.++ .+|..+..++.|+.
T Consensus 28 E~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~ 104 (177)
T KOG4579|consen 28 ELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRS 104 (177)
T ss_pred Hhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhh
Confidence 3455677777665 3433 3455567777899999998 66666554 458899999999999 78888999999999
Q ss_pred EEccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhh
Q 024632 148 IDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASL 187 (265)
Q Consensus 148 L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~ 187 (265)
+++++|.+. ..|..+..+.++..|+..+|... ++|-.+
T Consensus 105 lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl 142 (177)
T KOG4579|consen 105 LNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDL 142 (177)
T ss_pred cccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHH
Confidence 999999999 78888888999999999999887 677653
No 36
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.61 E-value=3.5e-10 Score=104.47 Aligned_cols=130 Identities=28% Similarity=0.320 Sum_probs=99.9
Q ss_pred CCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCch-HhhhCCcCCEEE
Q 024632 71 GRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPP-QLTLCAYLNVID 149 (265)
Q Consensus 71 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~ 149 (265)
..|.+.+.++|++. .+...+.-++.++.|+|++|++. ... .+..+++|++|||++|.++ .+|. +...+ .|+.|.
T Consensus 164 n~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~-~v~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~ 238 (1096)
T KOG1859|consen 164 NKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFT-KVD-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLN 238 (1096)
T ss_pred hhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhh-hhH-HHHhcccccccccccchhc-cccccchhhh-hheeee
Confidence 35778888899888 67788888999999999999998 443 7889999999999999998 5554 23333 499999
Q ss_pred ccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCCCCCC
Q 024632 150 LHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKDLYG 210 (265)
Q Consensus 150 Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~~~c~ 210 (265)
+++|.++ .+ ..+.++.+|+.||++.|-+++.---.+- ..+..|..+.+.|||..|.
T Consensus 239 lrnN~l~-tL-~gie~LksL~~LDlsyNll~~hseL~pL---wsLs~L~~L~LeGNPl~c~ 294 (1096)
T KOG1859|consen 239 LRNNALT-TL-RGIENLKSLYGLDLSYNLLSEHSELEPL---WSLSSLIVLWLEGNPLCCA 294 (1096)
T ss_pred ecccHHH-hh-hhHHhhhhhhccchhHhhhhcchhhhHH---HHHHHHHHHhhcCCccccC
Confidence 9999998 33 3478899999999999998754211110 1144567788999997775
No 37
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.32 E-value=4.2e-07 Score=88.80 Aligned_cols=107 Identities=24% Similarity=0.280 Sum_probs=88.4
Q ss_pred CCeEEEEeeCCC--ccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEE
Q 024632 71 GRIYKLSLTNLS--LQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVI 148 (265)
Q Consensus 71 ~~l~~L~L~~n~--l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 148 (265)
+.+++|-+..|. +.......|..++.|+.|||++|.--+.+|+.++.+.+|++|++++..++ .+|.+++++..|.+|
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~L 623 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYL 623 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhee
Confidence 468888888886 44233444777999999999988766689999999999999999999998 899999999999999
Q ss_pred EccCccCcccCChhccCCCCCCEEEcccCC
Q 024632 149 DLHDNLLTGQIPQQLGLLVRLSAFDVSNNK 178 (265)
Q Consensus 149 ~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~ 178 (265)
|+.++.....+|.....+++|++|.+....
T Consensus 624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 624 NLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred ccccccccccccchhhhcccccEEEeeccc
Confidence 999888766677777779999999887654
No 38
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.30 E-value=6.6e-08 Score=72.53 Aligned_cols=113 Identities=19% Similarity=0.279 Sum_probs=88.9
Q ss_pred cCCCeEEEEeeCCCccccCCccCc-CCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCE
Q 024632 69 NNGRIYKLSLTNLSLQGSISPYLS-NCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNV 147 (265)
Q Consensus 69 ~~~~l~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 147 (265)
....++.++|++|.+. .+|+.|. ..+.++.|++++|.++ .+|..+..++.|+.|+++.|.+. ..|..+..+.++..
T Consensus 51 ~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~ 127 (177)
T KOG4579|consen 51 KGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDM 127 (177)
T ss_pred CCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHH
Confidence 4567889999999999 5665554 4568999999999999 89999999999999999999998 77888888999999
Q ss_pred EEccCccCcccCChhccCCCCCCEEEcccCCCCCCCCh
Q 024632 148 IDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPA 185 (265)
Q Consensus 148 L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~ 185 (265)
|+..+|.+. .+|-.+..-...-..+++++.+.+.-|.
T Consensus 128 Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~~ 164 (177)
T KOG4579|consen 128 LDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETKK 164 (177)
T ss_pred hcCCCCccc-cCcHHHhccccHHHHHhcCCcccccCcc
Confidence 999999998 7776543222333345566666655443
No 39
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.22 E-value=1.4e-06 Score=52.77 Aligned_cols=36 Identities=36% Similarity=0.596 Sum_probs=20.6
Q ss_pred cCCEEEccCccCcccCChhccCCCCCCEEEcccCCCC
Q 024632 144 YLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLS 180 (265)
Q Consensus 144 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~ 180 (265)
+|++|++++|+|+ .+|..+.++++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4566666666666 45555666666666666666665
No 40
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.16 E-value=1.6e-06 Score=52.49 Aligned_cols=36 Identities=33% Similarity=0.655 Sum_probs=22.1
Q ss_pred ccceeccccccCCCCCchHhhhCCcCCEEEccCccCc
Q 024632 120 NLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLT 156 (265)
Q Consensus 120 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 156 (265)
+|++|++++|+++ .+|..+.++++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4666666666666 45555666666666666666666
No 41
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.14 E-value=1.6e-06 Score=84.77 Aligned_cols=127 Identities=24% Similarity=0.286 Sum_probs=97.9
Q ss_pred CCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCC--CCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCE
Q 024632 70 NGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNA--LTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNV 147 (265)
Q Consensus 70 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~--l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 147 (265)
...++.+.+-+|.+. .++... ..+.|+.|-+..|. +....++.|..++.|+.|||++|.=-+.+|..++.+-+|++
T Consensus 522 ~~~~rr~s~~~~~~~-~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lry 599 (889)
T KOG4658|consen 522 WNSVRRMSLMNNKIE-HIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRY 599 (889)
T ss_pred hhheeEEEEeccchh-hccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhc
Confidence 356788888888876 444433 34478999999886 55233445788999999999998766799999999999999
Q ss_pred EEccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCC
Q 024632 148 IDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFE 203 (265)
Q Consensus 148 L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~ 203 (265)
|++++..+. .+|..++++..|.+||+..+.....+|..... +++|+.+.+.
T Consensus 600 L~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~----L~~Lr~L~l~ 650 (889)
T KOG4658|consen 600 LDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLE----LQSLRVLRLP 650 (889)
T ss_pred ccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhh----cccccEEEee
Confidence 999999999 99999999999999999988765455544443 5555554433
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.12 E-value=5.2e-07 Score=81.69 Aligned_cols=106 Identities=32% Similarity=0.411 Sum_probs=52.1
Q ss_pred cCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEE
Q 024632 69 NNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVI 148 (265)
Q Consensus 69 ~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 148 (265)
.+++++.+++.+|.+. .+...+..+++|++|++++|.|+. +. .+..+..|+.|++++|.++ .+ ..+..+..|+.+
T Consensus 93 ~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~-i~-~l~~l~~L~~L~l~~N~i~-~~-~~~~~l~~L~~l 167 (414)
T KOG0531|consen 93 KLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITK-LE-GLSTLTLLKELNLSGNLIS-DI-SGLESLKSLKLL 167 (414)
T ss_pred cccceeeeeccccchh-hcccchhhhhcchheecccccccc-cc-chhhccchhhheeccCcch-hc-cCCccchhhhcc
Confidence 3455555555555555 222224445555555555555552 21 2334444555555555554 22 223335555555
Q ss_pred EccCccCcccCChh-ccCCCCCCEEEcccCCCC
Q 024632 149 DLHDNLLTGQIPQQ-LGLLVRLSAFDVSNNKLS 180 (265)
Q Consensus 149 ~Ls~N~l~~~~p~~-~~~l~~L~~L~l~~N~l~ 180 (265)
++++|++. .++.. ...+.+++.+++.+|.+.
T Consensus 168 ~l~~n~i~-~ie~~~~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 168 DLSYNRIV-DIENDELSELISLEELDLGGNSIR 199 (414)
T ss_pred cCCcchhh-hhhhhhhhhccchHHHhccCCchh
Confidence 55555555 22221 244455555555555554
No 43
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.07 E-value=1.1e-06 Score=79.67 Aligned_cols=106 Identities=31% Similarity=0.391 Sum_probs=67.4
Q ss_pred CCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEEE
Q 024632 70 NGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVID 149 (265)
Q Consensus 70 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 149 (265)
+..+..+++..|.+. .+-..+..+.+|+.|++..|.+. .+...+..+++|++|++++|.++.. ..+..+..|+.|+
T Consensus 71 l~~l~~l~l~~n~i~-~~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~ 146 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIA-KILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELN 146 (414)
T ss_pred hHhHHhhccchhhhh-hhhcccccccceeeeeccccchh-hcccchhhhhcchheeccccccccc--cchhhccchhhhe
Confidence 345555666666666 23334666677777777777777 3443356677777777777777632 2355566677777
Q ss_pred ccCccCcccCChhccCCCCCCEEEcccCCCCC
Q 024632 150 LHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSG 181 (265)
Q Consensus 150 Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g 181 (265)
+++|.++ .++ .+..++.|+.+++++|.++.
T Consensus 147 l~~N~i~-~~~-~~~~l~~L~~l~l~~n~i~~ 176 (414)
T KOG0531|consen 147 LSGNLIS-DIS-GLESLKSLKLLDLSYNRIVD 176 (414)
T ss_pred eccCcch-hcc-CCccchhhhcccCCcchhhh
Confidence 7777776 332 34556777777777777763
No 44
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=1.3e-06 Score=76.87 Aligned_cols=87 Identities=21% Similarity=0.258 Sum_probs=44.5
Q ss_pred CCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCc--hHhhhCCcCCEEEccCccCccc-CChh-----cc
Q 024632 93 NCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIP--PQLTLCAYLNVIDLHDNLLTGQ-IPQQ-----LG 164 (265)
Q Consensus 93 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p--~~~~~l~~L~~L~Ls~N~l~~~-~p~~-----~~ 164 (265)
.+|+|+.|+|+.|..-+.-.....-+..|+.|||++|.+- ..+ ...+.++.|+.|+++.+.+... .|+. ..
T Consensus 220 ~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~ 298 (505)
T KOG3207|consen 220 TFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTH 298 (505)
T ss_pred hCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhhhhccccCcchhcCCCccchhhhc
Confidence 3455555555555311111112223455666666666654 233 2345566666666666666531 2222 24
Q ss_pred CCCCCCEEEcccCCCC
Q 024632 165 LLVRLSAFDVSNNKLS 180 (265)
Q Consensus 165 ~l~~L~~L~l~~N~l~ 180 (265)
.+++|++|+++.|+++
T Consensus 299 ~f~kL~~L~i~~N~I~ 314 (505)
T KOG3207|consen 299 TFPKLEYLNISENNIR 314 (505)
T ss_pred ccccceeeecccCccc
Confidence 4566777777777664
No 45
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=1.1e-06 Score=77.48 Aligned_cols=141 Identities=20% Similarity=0.229 Sum_probs=72.0
Q ss_pred eeecCCCeEEEEeeCCCcccc--CCccCcCCCCCCEEECcCCCCCCCCCCC-cccCcccceeccccccCCC---------
Q 024632 66 ATCNNGRIYKLSLTNLSLQGS--ISPYLSNCTNLQSLDLSSNALTGSIPAD-LQYLVNLAVLNLSANRLAG--------- 133 (265)
Q Consensus 66 ~~~~~~~l~~L~L~~n~l~~~--~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~--------- 133 (265)
+...+++++.|||+.|-+... +-.....+++|+.|+++.|++.-..... -..+++|+.|.|+.+.++.
T Consensus 141 ~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~ 220 (505)
T KOG3207|consen 141 YSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLT 220 (505)
T ss_pred hhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHh
Confidence 334467777777777766522 2233455677777777777665222111 1134455555555554442
Q ss_pred ----------------CCchHhhhCCcCCEEEccCccCcccCC--hhccCCCCCCEEEcccCCCCCC-CCh-hhhccCCC
Q 024632 134 ----------------EIPPQLTLCAYLNVIDLHDNLLTGQIP--QQLGLLVRLSAFDVSNNKLSGP-IPA-SLGNRSGN 193 (265)
Q Consensus 134 ----------------~~p~~~~~l~~L~~L~Ls~N~l~~~~p--~~~~~l~~L~~L~l~~N~l~g~-~p~-~~~~~~~~ 193 (265)
.-......+..|+.|||++|++- ..+ ...+.++.|+.|+++.+.++.. .|+ .....+..
T Consensus 221 fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~ 299 (505)
T KOG3207|consen 221 FPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHT 299 (505)
T ss_pred CCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhhhhccccCcchhcCCCccchhhhcc
Confidence 11112233445666666666655 223 2345666666666666665432 222 11222344
Q ss_pred CCCCCCCCCCCCCC
Q 024632 194 LPKFNASSFEGNKD 207 (265)
Q Consensus 194 l~~l~~~~~~~N~~ 207 (265)
++.++.++...|+.
T Consensus 300 f~kL~~L~i~~N~I 313 (505)
T KOG3207|consen 300 FPKLEYLNISENNI 313 (505)
T ss_pred cccceeeecccCcc
Confidence 66666666666653
No 46
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.01 E-value=8.8e-08 Score=89.00 Aligned_cols=106 Identities=26% Similarity=0.278 Sum_probs=83.9
Q ss_pred CCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEEE
Q 024632 70 NGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVID 149 (265)
Q Consensus 70 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 149 (265)
++.++.|+|++|+++ .+. .+..++.|++|||++|.+. .+|..-..--+|+.|.+++|.++ .+ ..+.++.+|+.||
T Consensus 186 l~ale~LnLshNk~~-~v~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrnN~l~-tL-~gie~LksL~~LD 260 (1096)
T KOG1859|consen 186 LPALESLNLSHNKFT-KVD-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRNNALT-TL-RGIENLKSLYGLD 260 (1096)
T ss_pred HHHhhhhccchhhhh-hhH-HHHhcccccccccccchhc-cccccchhhhhheeeeecccHHH-hh-hhHHhhhhhhccc
Confidence 578999999999998 343 7889999999999999998 66643222234999999999998 33 4688999999999
Q ss_pred ccCccCcccCC-hhccCCCCCCEEEcccCCCC
Q 024632 150 LHDNLLTGQIP-QQLGLLVRLSAFDVSNNKLS 180 (265)
Q Consensus 150 Ls~N~l~~~~p-~~~~~l~~L~~L~l~~N~l~ 180 (265)
+++|-+.+.-. ..+..+..|+.|.|.+|++.
T Consensus 261 lsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 261 LSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred hhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 99999885321 12455677889999999875
No 47
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=97.89 E-value=2.8e-05 Score=46.75 Aligned_cols=41 Identities=34% Similarity=0.674 Sum_probs=29.9
Q ss_pred hhHHHHHHHHHHhCC-CCCCCCCCCCCCCCCCCCCCCCCCCCceeec
Q 024632 24 PNDEACLTHLSQSLK-DPYKNLQNWTKSTFSNACNGFTSYLPGATCN 69 (265)
Q Consensus 24 ~~~~~~l~~~~~~l~-~~~~~~~~w~~~~~~~~c~~~~~~~~~~~~~ 69 (265)
++|.++|++||+.+. +|...+.+|+.....++|+ |.|+.|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~-----W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCS-----WSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCC-----STTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCCcCCCCCee-----eccEEeC
Confidence 579999999999998 5778899999753247897 9999984
No 48
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.86 E-value=2e-05 Score=62.97 Aligned_cols=105 Identities=25% Similarity=0.296 Sum_probs=74.4
Q ss_pred CCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCc--hHhhhCCcCCEE
Q 024632 71 GRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIP--PQLTLCAYLNVI 148 (265)
Q Consensus 71 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p--~~~~~l~~L~~L 148 (265)
.+...+||++|.+. .+ +.|..++.|.+|.+++|+|+..-|.--..+++|+.|.|.+|++. .+- +.+..++.|++|
T Consensus 42 d~~d~iDLtdNdl~-~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLR-KL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEYL 118 (233)
T ss_pred cccceecccccchh-hc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh-hhhhcchhccCCcccee
Confidence 45678899999886 23 34777888999999999998444433344677999999999886 221 235677888999
Q ss_pred EccCccCcccCC---hhccCCCCCCEEEcccCC
Q 024632 149 DLHDNLLTGQIP---QQLGLLVRLSAFDVSNNK 178 (265)
Q Consensus 149 ~Ls~N~l~~~~p---~~~~~l~~L~~L~l~~N~ 178 (265)
.+-+|..+..-- ..+..+++|+.||...=.
T Consensus 119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred eecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 888888873211 235677888888887643
No 49
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.69 E-value=6e-05 Score=60.35 Aligned_cols=107 Identities=21% Similarity=0.242 Sum_probs=75.1
Q ss_pred CCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEEEccCccCcccCC--hhccCCCCCCE
Q 024632 94 CTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIP--QQLGLLVRLSA 171 (265)
Q Consensus 94 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p--~~~~~l~~L~~ 171 (265)
+.....+||+.|.+. .+ ..|..++.|.+|.+++|+++..-|.--.-+++|..|.|.+|++. .+. +-+..+++|++
T Consensus 41 ~d~~d~iDLtdNdl~-~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~ 117 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLR-KL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEY 117 (233)
T ss_pred ccccceecccccchh-hc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh-hhhhcchhccCCccce
Confidence 346678899999987 33 36788999999999999999555554445678999999999987 322 23567889999
Q ss_pred EEcccCCCCCCCChhhhccCCCCCCCCCCCCCC
Q 024632 172 FDVSNNKLSGPIPASLGNRSGNLPKFNASSFEG 204 (265)
Q Consensus 172 L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~ 204 (265)
|.+-+|+.+. -...-....-.+|++..++|++
T Consensus 118 Ltll~Npv~~-k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 118 LTLLGNPVEH-KKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred eeecCCchhc-ccCceeEEEEecCcceEeehhh
Confidence 9999998862 2221111122366666666654
No 50
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.66 E-value=9e-06 Score=69.85 Aligned_cols=134 Identities=19% Similarity=0.246 Sum_probs=87.3
Q ss_pred CCeEEEEeeCCCccccCCc----cCcCCCCCCEEECcCCCCCCC-------------CCCCcccCcccceeccccccCCC
Q 024632 71 GRIYKLSLTNLSLQGSISP----YLSNCTNLQSLDLSSNALTGS-------------IPADLQYLVNLAVLNLSANRLAG 133 (265)
Q Consensus 71 ~~l~~L~L~~n~l~~~~p~----~l~~l~~L~~L~Ls~N~l~~~-------------~p~~l~~l~~L~~L~Ls~N~l~~ 133 (265)
++|++|+|++|.+...-++ -+..+..|++|+|.+|.+... ...-...-+.|+++...+|++..
T Consensus 92 ~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen 171 (382)
T KOG1909|consen 92 PKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLEN 171 (382)
T ss_pred CceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccccc
Confidence 4889999999988643332 355678889999998887621 11123445778888888888863
Q ss_pred C----CchHhhhCCcCCEEEccCccCcc----cCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCC
Q 024632 134 E----IPPQLTLCAYLNVIDLHDNLLTG----QIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEG 204 (265)
Q Consensus 134 ~----~p~~~~~l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~ 204 (265)
. +...+...+.|+.+.+..|.|.. .+-..+..+++|+.||+..|-|+-.--..++.....++.+..+++++
T Consensus 172 ~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~d 250 (382)
T KOG1909|consen 172 GGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGD 250 (382)
T ss_pred ccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccc
Confidence 2 12345666788888888887752 12245677888888888888887443344444334455566665554
No 51
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.58 E-value=4.1e-05 Score=63.46 Aligned_cols=117 Identities=26% Similarity=0.274 Sum_probs=78.9
Q ss_pred CCCCCCCCCCCceeecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCC--CCCCCCCCCcccCcccceeccccccC
Q 024632 54 NACNGFTSYLPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSN--ALTGSIPADLQYLVNLAVLNLSANRL 131 (265)
Q Consensus 54 ~~c~~~~~~~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N--~l~~~~p~~l~~l~~L~~L~Ls~N~l 131 (265)
|.|-...+...+.+-....++.+++.+.+++. + ..+..+++|+.|+++.| .+.+.++.....+++|++|++++|++
T Consensus 26 D~~~s~~g~~~gl~d~~~~le~ls~~n~gltt-~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki 103 (260)
T KOG2739|consen 26 DNARSGAGKLGGLTDEFVELELLSVINVGLTT-L-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKI 103 (260)
T ss_pred chhhhcCCCcccccccccchhhhhhhccceee-c-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcc
Confidence 45555555566666667778888888877762 2 23566888999999999 56655655556679999999999998
Q ss_pred CCCCchH---hhhCCcCCEEEccCccCcccC---ChhccCCCCCCEEEc
Q 024632 132 AGEIPPQ---LTLCAYLNVIDLHDNLLTGQI---PQQLGLLVRLSAFDV 174 (265)
Q Consensus 132 ~~~~p~~---~~~l~~L~~L~Ls~N~l~~~~---p~~~~~l~~L~~L~l 174 (265)
+. ++. ...+.+|..|++.+|..+..- -..|.-+++|++||-
T Consensus 104 ~~--lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 104 KD--LSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred cc--ccccchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence 72 333 345667778888888776421 123455667766653
No 52
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.32 E-value=7.8e-05 Score=71.39 Aligned_cols=126 Identities=20% Similarity=0.216 Sum_probs=88.7
Q ss_pred CCCceeec-CCCeEEEEeeCCCcc-ccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCC-CCchH
Q 024632 62 YLPGATCN-NGRIYKLSLTNLSLQ-GSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAG-EIPPQ 138 (265)
Q Consensus 62 ~~~~~~~~-~~~l~~L~L~~n~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-~~p~~ 138 (265)
.|+..++. ++.|++|.+.+-.+. ..+..-..++++|..||+|+.+++ .+ ..++.+.+|+.|-+.+=.+.. ..-..
T Consensus 138 ~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GIS~LknLq~L~mrnLe~e~~~~l~~ 215 (699)
T KOG3665|consen 138 GWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGISRLKNLQVLSMRNLEFESYQDLID 215 (699)
T ss_pred cHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HHHhccccHHHHhccCCCCCchhhHHH
Confidence 37766554 799999999987764 223344667889999999999888 33 567888999988887766652 11235
Q ss_pred hhhCCcCCEEEccCccCcccC--C----hhccCCCCCCEEEcccCCCCCCCChhhhc
Q 024632 139 LTLCAYLNVIDLHDNLLTGQI--P----QQLGLLVRLSAFDVSNNKLSGPIPASLGN 189 (265)
Q Consensus 139 ~~~l~~L~~L~Ls~N~l~~~~--p----~~~~~l~~L~~L~l~~N~l~g~~p~~~~~ 189 (265)
+.++++|++||+|........ . +.-..+|.|+.||.|+..+...+-+.+-+
T Consensus 216 LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~ 272 (699)
T KOG3665|consen 216 LFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLN 272 (699)
T ss_pred HhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHH
Confidence 678899999999987655221 1 12245889999999988887655444443
No 53
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.16 E-value=0.0013 Score=58.92 Aligned_cols=14 Identities=7% Similarity=0.145 Sum_probs=7.5
Q ss_pred CCeEEEEeeCCCcc
Q 024632 71 GRIYKLSLTNLSLQ 84 (265)
Q Consensus 71 ~~l~~L~L~~n~l~ 84 (265)
.+++.|++++|.++
T Consensus 52 ~~l~~L~Is~c~L~ 65 (426)
T PRK15386 52 RASGRLYIKDCDIE 65 (426)
T ss_pred cCCCEEEeCCCCCc
Confidence 44555555555554
No 54
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.09 E-value=8.8e-05 Score=63.91 Aligned_cols=41 Identities=29% Similarity=0.355 Sum_probs=17.6
Q ss_pred ccCcccceeccccccCCCC----CchHhhhCCcCCEEEccCccCc
Q 024632 116 QYLVNLAVLNLSANRLAGE----IPPQLTLCAYLNVIDLHDNLLT 156 (265)
Q Consensus 116 ~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~ 156 (265)
..+++|+.|||..|.++.. +...+..++.|+.++++++.+.
T Consensus 210 ~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~ 254 (382)
T KOG1909|consen 210 EHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLE 254 (382)
T ss_pred HhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccc
Confidence 3344555555555544321 1112233444555555555444
No 55
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.02 E-value=0.00017 Score=69.12 Aligned_cols=134 Identities=17% Similarity=0.200 Sum_probs=93.0
Q ss_pred CCeEEEEeeCCCcc-ccCCccCc-CCCCCCEEECcCCCCCCC-CCCCcccCcccceeccccccCCCCCchHhhhCCcCCE
Q 024632 71 GRIYKLSLTNLSLQ-GSISPYLS-NCTNLQSLDLSSNALTGS-IPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNV 147 (265)
Q Consensus 71 ~~l~~L~L~~n~l~-~~~p~~l~-~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 147 (265)
.+|++|++++...- ..-|..++ .+|+|+.|.+++-.+... +.....++++|..||+|+..++. + .+++++++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n-l-~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN-L-SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccC-c-HHHhccccHHH
Confidence 57888999886543 11222333 479999999988766422 22334578999999999999983 3 78999999999
Q ss_pred EEccCccCcc-cCChhccCCCCCCEEEcccCCCCCC--CChhhhccCCCCCCCCCCCCCCCC
Q 024632 148 IDLHDNLLTG-QIPQQLGLLVRLSAFDVSNNKLSGP--IPASLGNRSGNLPKFNASSFEGNK 206 (265)
Q Consensus 148 L~Ls~N~l~~-~~p~~~~~l~~L~~L~l~~N~l~g~--~p~~~~~~~~~l~~l~~~~~~~N~ 206 (265)
|.+.+=.+.. ..-..+.++++|+.||+|....... +...+-.+...+|+|..++.+|..
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcc
Confidence 9877666652 1123577899999999998766422 334444445568888888877653
No 56
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.01 E-value=0.00061 Score=56.61 Aligned_cols=91 Identities=23% Similarity=0.328 Sum_probs=67.6
Q ss_pred CCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccc--cCCCCCchHhhhCCcCCEEEccCccCcccCChh--
Q 024632 87 ISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSAN--RLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQ-- 162 (265)
Q Consensus 87 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N--~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-- 162 (265)
+..-.-.+..|+.+.+.+..++ .+ ..+..+++|++|.++.| +..+.++.....+++|+++++++|++.. ++.
T Consensus 35 ~~gl~d~~~~le~ls~~n~glt-t~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~ 110 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLT-TL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLR 110 (260)
T ss_pred cccccccccchhhhhhhcccee-ec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccc
Confidence 4444455667777777777766 22 35678899999999999 6666666666677999999999999983 333
Q ss_pred -ccCCCCCCEEEcccCCCCC
Q 024632 163 -LGLLVRLSAFDVSNNKLSG 181 (265)
Q Consensus 163 -~~~l~~L~~L~l~~N~l~g 181 (265)
+..+.+|..|++.+|..+.
T Consensus 111 pl~~l~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 111 PLKELENLKSLDLFNCSVTN 130 (260)
T ss_pred hhhhhcchhhhhcccCCccc
Confidence 4566778899999987764
No 57
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.98 E-value=0.0021 Score=57.59 Aligned_cols=95 Identities=14% Similarity=0.271 Sum_probs=56.2
Q ss_pred CCeEEEEeeCCCccccCCccCcCCCCCCEEECcCC-CCCCCCCCCcccCcccceeccccccCC--CCCchHhhhC-----
Q 024632 71 GRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSN-ALTGSIPADLQYLVNLAVLNLSANRLA--GEIPPQLTLC----- 142 (265)
Q Consensus 71 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~~~p~~l~~l~~L~~L~Ls~N~l~--~~~p~~~~~l----- 142 (265)
.+|++|.++++.--..+|..+. .+|+.|++++| .+. .+|.. |+.|+++.|... +.+|.++..+
T Consensus 72 ~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~-sLP~s------Le~L~L~~n~~~~L~~LPssLk~L~I~~~ 142 (426)
T PRK15386 72 NELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEIS-GLPES------VRSLEIKGSATDSIKNVPNGLTSLSINSY 142 (426)
T ss_pred CCCcEEEccCCCCcccCCchhh--hhhhheEccCccccc-ccccc------cceEEeCCCCCcccccCcchHhheecccc
Confidence 3578888877433235565442 57788888877 454 45543 444455544321 2455444333
Q ss_pred -------------CcCCEEEccCccCcccCChhccCCCCCCEEEcccC
Q 024632 143 -------------AYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNN 177 (265)
Q Consensus 143 -------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N 177 (265)
++|++|++++|... .+|..+. .+|+.|+++.|
T Consensus 143 n~~~~~~lp~~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 143 NPENQARIDNLISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred ccccccccccccCCcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence 36888888887765 4554433 47888888776
No 58
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.73 E-value=0.0012 Score=56.19 Aligned_cols=136 Identities=18% Similarity=0.190 Sum_probs=80.8
Q ss_pred cCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCC-CCCCcccCcccceeccccccCCCCC---------chH
Q 024632 69 NNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGS-IPADLQYLVNLAVLNLSANRLAGEI---------PPQ 138 (265)
Q Consensus 69 ~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~---------p~~ 138 (265)
+++++++|+++.|.+...+...-..+.+|+.|.|.+..+.-. ....+..++.++.|.+|.|.+.... ...
T Consensus 95 ~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~ 174 (418)
T KOG2982|consen 95 QLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTE 174 (418)
T ss_pred cCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchh
Confidence 689999999999999844332224566888888888776532 3344566788888888888443100 000
Q ss_pred h--------------------hhCCcCCEEEccCccCccc-CChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCC
Q 024632 139 L--------------------TLCAYLNVIDLHDNLLTGQ-IPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKF 197 (265)
Q Consensus 139 ~--------------------~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l 197 (265)
+ ..++++..+.+..|.+... ....+..++.+..|+|+.|++... +++.. ...++.+
T Consensus 175 v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idsw--asvD~-Ln~f~~l 251 (418)
T KOG2982|consen 175 VLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSW--ASVDA-LNGFPQL 251 (418)
T ss_pred hhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccH--HHHHH-HcCCchh
Confidence 0 1234555555555655421 112344566677788888877532 11222 1237777
Q ss_pred CCCCCCCCCC
Q 024632 198 NASSFEGNKD 207 (265)
Q Consensus 198 ~~~~~~~N~~ 207 (265)
..++++.||.
T Consensus 252 ~dlRv~~~Pl 261 (418)
T KOG2982|consen 252 VDLRVSENPL 261 (418)
T ss_pred heeeccCCcc
Confidence 7777877774
No 59
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.40 E-value=0.0013 Score=56.01 Aligned_cols=85 Identities=32% Similarity=0.402 Sum_probs=52.7
Q ss_pred CCCCCEEECcCCCCCC--CCCCCcccCcccceeccccccCCCCCchHh-hhCCcCCEEEccCccCcccC-ChhccCCCCC
Q 024632 94 CTNLQSLDLSSNALTG--SIPADLQYLVNLAVLNLSANRLAGEIPPQL-TLCAYLNVIDLHDNLLTGQI-PQQLGLLVRL 169 (265)
Q Consensus 94 l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L 169 (265)
.+.++++||.+|.++. .+..-+.+++.|++|+++.|.+...+. .. ....+|+++-|.+..+...- -..+..+|.+
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~-~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIK-SLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccc-cCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 4667788888888772 122235567888888888888763221 11 23456777777776665322 2334566777
Q ss_pred CEEEcccCCC
Q 024632 170 SAFDVSNNKL 179 (265)
Q Consensus 170 ~~L~l~~N~l 179 (265)
+.|+++.|.+
T Consensus 149 telHmS~N~~ 158 (418)
T KOG2982|consen 149 TELHMSDNSL 158 (418)
T ss_pred hhhhhccchh
Confidence 7777777744
No 60
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.39 E-value=0.00024 Score=59.69 Aligned_cols=78 Identities=28% Similarity=0.325 Sum_probs=43.1
Q ss_pred cCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCC--CcccCcccceeccccccCCCCCchH-----hhh
Q 024632 69 NNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPA--DLQYLVNLAVLNLSANRLAGEIPPQ-----LTL 141 (265)
Q Consensus 69 ~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~--~l~~l~~L~~L~Ls~N~l~~~~p~~-----~~~ 141 (265)
.++.|+.|.|+-|.|+.. ..+..++.|++|+|..|.|. .+.+ -+.++++|+.|.|..|.-.|.-+.. +..
T Consensus 39 kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~ 115 (388)
T KOG2123|consen 39 KMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRV 115 (388)
T ss_pred hcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHH
Confidence 466666667666666622 12555666666666666665 3322 2455666666666666655443332 334
Q ss_pred CCcCCEEE
Q 024632 142 CAYLNVID 149 (265)
Q Consensus 142 l~~L~~L~ 149 (265)
+++|+.||
T Consensus 116 LPnLkKLD 123 (388)
T KOG2123|consen 116 LPNLKKLD 123 (388)
T ss_pred cccchhcc
Confidence 55555543
No 61
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.24 E-value=0.00026 Score=60.10 Aligned_cols=59 Identities=22% Similarity=0.219 Sum_probs=30.6
Q ss_pred hCCcCCEEEccCcc-CcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCC
Q 024632 141 LCAYLNVIDLHDNL-LTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSF 202 (265)
Q Consensus 141 ~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~ 202 (265)
++++|..|||++|. ++...-..|..++.|++|.++.+.. .+|..+-.+ ...|.+..++.
T Consensus 311 rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l-~s~psl~yLdv 370 (419)
T KOG2120|consen 311 RCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLEL-NSKPSLVYLDV 370 (419)
T ss_pred hCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeee-ccCcceEEEEe
Confidence 45666667766554 3322233455666667776666653 455544432 22444544443
No 62
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=96.08 E-value=0.012 Score=43.61 Aligned_cols=36 Identities=19% Similarity=0.131 Sum_probs=17.4
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 024632 219 KGLSVLAIVGIGLGSGFASLVISFTGVCIWLKVTEH 254 (265)
Q Consensus 219 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (265)
++++...|++|++|+++.++.+++++.++.+|+|||
T Consensus 59 h~fs~~~i~~Ii~gv~aGvIg~Illi~y~irR~~Kk 94 (122)
T PF01102_consen 59 HRFSEPAIIGIIFGVMAGVIGIILLISYCIRRLRKK 94 (122)
T ss_dssp SSSS-TCHHHHHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred cCccccceeehhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 355666777777776655444433333333333333
No 63
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.06 E-value=0.0025 Score=32.23 Aligned_cols=12 Identities=50% Similarity=0.625 Sum_probs=5.1
Q ss_pred CCEEEccCccCc
Q 024632 145 LNVIDLHDNLLT 156 (265)
Q Consensus 145 L~~L~Ls~N~l~ 156 (265)
|++||+++|+++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 344444444444
No 64
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=96.01 E-value=0.0002 Score=58.66 Aligned_cols=85 Identities=19% Similarity=0.141 Sum_probs=60.6
Q ss_pred cCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEE
Q 024632 69 NNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVI 148 (265)
Q Consensus 69 ~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 148 (265)
...+++.||++.|++. .+...++-++.+..||++.|.+. ..|+++.+...++.+++..|.++ ..|.+++..+.++++
T Consensus 40 ~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKN 116 (326)
T ss_pred ccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchh
Confidence 4567777777777765 34455666667777777777777 67777777777777777777777 667777777777777
Q ss_pred EccCccCc
Q 024632 149 DLHDNLLT 156 (265)
Q Consensus 149 ~Ls~N~l~ 156 (265)
++-.|.+.
T Consensus 117 e~k~~~~~ 124 (326)
T KOG0473|consen 117 EQKKTEFF 124 (326)
T ss_pred hhccCcch
Confidence 77777665
No 65
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=95.81 E-value=0.0002 Score=58.72 Aligned_cols=88 Identities=20% Similarity=0.204 Sum_probs=74.1
Q ss_pred cCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEEEccCccCcccCChhccCCCCC
Q 024632 90 YLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRL 169 (265)
Q Consensus 90 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 169 (265)
++......+.||++.|++. .+-..+..++.+..||++.|.+. -+|..++....++.+++..|..+ ..|.+++..+.+
T Consensus 37 ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~ 113 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHP 113 (326)
T ss_pred hhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCc
Confidence 3555677788999999887 66677888888999999999988 67888888888888888888888 788889999999
Q ss_pred CEEEcccCCCC
Q 024632 170 SAFDVSNNKLS 180 (265)
Q Consensus 170 ~~L~l~~N~l~ 180 (265)
+++++-.|.|.
T Consensus 114 k~~e~k~~~~~ 124 (326)
T KOG0473|consen 114 KKNEQKKTEFF 124 (326)
T ss_pred chhhhccCcch
Confidence 99999888865
No 66
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.64 E-value=0.029 Score=41.54 Aligned_cols=105 Identities=19% Similarity=0.279 Sum_probs=54.9
Q ss_pred eecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCC
Q 024632 67 TCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLN 146 (265)
Q Consensus 67 ~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 146 (265)
+.+.++++.+.+.+ .+...-...|..+++|+.+++..+ +...-...|..+.+++.+.+.+ .+.......+..+++|+
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~ 84 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLK 84 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccc
Confidence 33456777888775 455344455777888888888775 5523334567777888888865 33323334566678888
Q ss_pred EEEccCccCcccCChhccCCCCCCEEEccc
Q 024632 147 VIDLHDNLLTGQIPQQLGLLVRLSAFDVSN 176 (265)
Q Consensus 147 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~ 176 (265)
.+++..+ +...-...|.+. +++.+.+..
T Consensus 85 ~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 85 NIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp EEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred ccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 8888765 442333445565 777777664
No 67
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.62 E-value=0.0027 Score=32.05 Aligned_cols=18 Identities=44% Similarity=0.720 Sum_probs=8.5
Q ss_pred cceeccccccCCCCCchHh
Q 024632 121 LAVLNLSANRLAGEIPPQL 139 (265)
Q Consensus 121 L~~L~Ls~N~l~~~~p~~~ 139 (265)
|++||+++|.++ .+|+.|
T Consensus 2 L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEES-EEGTTT
T ss_pred ccEEECCCCcCE-eCChhh
Confidence 444555555554 444433
No 68
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=95.50 E-value=0.034 Score=31.77 Aligned_cols=14 Identities=21% Similarity=0.434 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHhhh
Q 024632 238 LVISFTGVCIWLKV 251 (265)
Q Consensus 238 ~~~~~~~~~~~~~~ 251 (265)
.++++.+.++++|.
T Consensus 20 ii~~~~YaCcykk~ 33 (38)
T PF02439_consen 20 IICMFYYACCYKKH 33 (38)
T ss_pred HHHHHHHHHHHccc
Confidence 33444444554333
No 69
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.50 E-value=0.026 Score=47.66 Aligned_cols=111 Identities=20% Similarity=0.222 Sum_probs=58.4
Q ss_pred cCCCeEEEEeeCCCccccCCcc----CcCCCCCCEEECcCCCCCCCCCCCc-------------ccCcccceeccccccC
Q 024632 69 NNGRIYKLSLTNLSLQGSISPY----LSNCTNLQSLDLSSNALTGSIPADL-------------QYLVNLAVLNLSANRL 131 (265)
Q Consensus 69 ~~~~l~~L~L~~n~l~~~~p~~----l~~l~~L~~L~Ls~N~l~~~~p~~l-------------~~l~~L~~L~Ls~N~l 131 (265)
.+++++.++|+.|.+....|+. ++.-+.|.+|.+++|.+...-...+ .+-+.|+.....+|++
T Consensus 90 kcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRl 169 (388)
T COG5238 90 KCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRL 169 (388)
T ss_pred cCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchh
Confidence 3467777777777776555543 4445667777777776641111111 1235566666666666
Q ss_pred CCCCchH-----hhhCCcCCEEEccCccCccc-----CChhccCCCCCCEEEcccCCCC
Q 024632 132 AGEIPPQ-----LTLCAYLNVIDLHDNLLTGQ-----IPQQLGLLVRLSAFDVSNNKLS 180 (265)
Q Consensus 132 ~~~~p~~-----~~~l~~L~~L~Ls~N~l~~~-----~p~~~~~l~~L~~L~l~~N~l~ 180 (265)
. ..|.. +..-..|+++.+..|.|... +-..+..+.+|+.||+..|.|+
T Consensus 170 e-ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft 227 (388)
T COG5238 170 E-NGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFT 227 (388)
T ss_pred c-cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchh
Confidence 5 22221 12223556666666655411 0011234456667777777665
No 70
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.08 E-value=0.002 Score=54.36 Aligned_cols=99 Identities=27% Similarity=0.279 Sum_probs=76.2
Q ss_pred CCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCch--HhhhCCcCCE
Q 024632 70 NGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPP--QLTLCAYLNV 147 (265)
Q Consensus 70 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~--~~~~l~~L~~ 147 (265)
+.+++.|+..++++.. + .....++.|++|.||-|+++ .+ ..+..++.|+.|+|..|.|. .+.+ -+.++++|+.
T Consensus 18 l~~vkKLNcwg~~L~D-I-sic~kMp~lEVLsLSvNkIs-sL-~pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDD-I-SICEKMPLLEVLSLSVNKIS-SL-APLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHhhhhcccCCCccH-H-HHHHhcccceeEEeeccccc-cc-hhHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhh
Confidence 5667778888888773 2 23567899999999999998 33 34778999999999999997 4433 3578899999
Q ss_pred EEccCccCcccCChh-----ccCCCCCCEEE
Q 024632 148 IDLHDNLLTGQIPQQ-----LGLLVRLSAFD 173 (265)
Q Consensus 148 L~Ls~N~l~~~~p~~-----~~~l~~L~~L~ 173 (265)
|-|..|.-.|.-+.. +..+++|+.||
T Consensus 93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 999999988766543 45677777775
No 71
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=94.80 E-value=0.00029 Score=59.77 Aligned_cols=57 Identities=32% Similarity=0.429 Sum_probs=27.1
Q ss_pred CeEEEEeeCCCccc-cCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceecccc
Q 024632 72 RIYKLSLTNLSLQG-SISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSA 128 (265)
Q Consensus 72 ~l~~L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 128 (265)
+|++|||++..++. .+...++.+..|+.|.+.++++++.+-..+.+-.+|+.|+++.
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm 243 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSM 243 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeecccc
Confidence 35555665555541 1222344445555555555555544433444444455555444
No 72
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=94.43 E-value=0.019 Score=48.51 Aligned_cols=113 Identities=23% Similarity=0.258 Sum_probs=65.4
Q ss_pred CcCCCCCCEEECcCCCCCCCCCCCc----ccCcccceeccccccCCCCCc-hHh-------------hhCCcCCEEEccC
Q 024632 91 LSNCTNLQSLDLSSNALTGSIPADL----QYLVNLAVLNLSANRLAGEIP-PQL-------------TLCAYLNVIDLHD 152 (265)
Q Consensus 91 l~~l~~L~~L~Ls~N~l~~~~p~~l----~~l~~L~~L~Ls~N~l~~~~p-~~~-------------~~l~~L~~L~Ls~ 152 (265)
+.++++|+..+||.|.+....|+.+ ..-+.|.+|.+++|.+. .+. ..+ ..-+.|++.....
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG-p~aG~rigkal~~la~nKKaa~kp~Le~vicgr 166 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG-PIAGGRIGKALFHLAYNKKAADKPKLEVVICGR 166 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC-ccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence 5566777777777777766555543 34466777777777764 221 112 1235677777777
Q ss_pred ccCcccCCh-----hccCCCCCCEEEcccCCCCCCCChhhhcc----CCCCCCCCCCCCCCCCCC
Q 024632 153 NLLTGQIPQ-----QLGLLVRLSAFDVSNNKLSGPIPASLGNR----SGNLPKFNASSFEGNKDL 208 (265)
Q Consensus 153 N~l~~~~p~-----~~~~l~~L~~L~l~~N~l~g~~p~~~~~~----~~~l~~l~~~~~~~N~~~ 208 (265)
|++.. -|. .+..-..|+.+.+..|-+. |..+..+ .....+|+.+++++|.+.
T Consensus 167 NRlen-gs~~~~a~~l~sh~~lk~vki~qNgIr---pegv~~L~~~gl~y~~~LevLDlqDNtft 227 (388)
T COG5238 167 NRLEN-GSKELSAALLESHENLKEVKIQQNGIR---PEGVTMLAFLGLFYSHSLEVLDLQDNTFT 227 (388)
T ss_pred chhcc-CcHHHHHHHHHhhcCceeEEeeecCcC---cchhHHHHHHHHHHhCcceeeeccccchh
Confidence 77652 221 1223346677777777654 4422211 112567788899998764
No 73
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=93.58 E-value=0.073 Score=45.81 Aligned_cols=25 Identities=16% Similarity=0.006 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHhhhcccccc
Q 024632 233 SGFASLVISFTGVCIWLKVTEHKMA 257 (265)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (265)
+++++++++++....||+|||++++
T Consensus 264 aIliIVLIMvIIYLILRYRRKKKmk 288 (299)
T PF02009_consen 264 AILIIVLIMVIIYLILRYRRKKKMK 288 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3344444545555555565555543
No 74
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.44 E-value=0.076 Score=39.26 Aligned_cols=100 Identities=18% Similarity=0.238 Sum_probs=51.6
Q ss_pred ceeecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCc
Q 024632 65 GATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAY 144 (265)
Q Consensus 65 ~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 144 (265)
..+...++++.+.+.++ +...-...+..+.+++.+.+.. .+...-...|..+++|+.+++..+ +...-...+.++ +
T Consensus 29 ~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~ 104 (129)
T PF13306_consen 29 NAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-N 104 (129)
T ss_dssp TTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T
T ss_pred hhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc-ccEEchhhhcCC-C
Confidence 34455668899999885 6633445678888899999976 444223345667899999999776 442334456666 8
Q ss_pred CCEEEccCccCcccCChhccCCCCC
Q 024632 145 LNVIDLHDNLLTGQIPQQLGLLVRL 169 (265)
Q Consensus 145 L~~L~Ls~N~l~~~~p~~~~~l~~L 169 (265)
|+.+.+.. .+...-...|.+.++|
T Consensus 105 l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 105 LKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp --EEE-TT-B-SS----GGG-----
T ss_pred ceEEEECC-CccEECCccccccccC
Confidence 88888876 4432334456665555
No 75
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=92.94 E-value=0.017 Score=44.07 Aligned_cols=34 Identities=18% Similarity=0.147 Sum_probs=15.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhcccccc
Q 024632 224 LAIVGIGLGSGFASLVISFTGVCIWLKVTEHKMA 257 (265)
Q Consensus 224 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (265)
..++++++|+++.++++++++++++++|+||...
T Consensus 49 nIVIGvVVGVGg~ill~il~lvf~~c~r~kktdf 82 (154)
T PF04478_consen 49 NIVIGVVVGVGGPILLGILALVFIFCIRRKKTDF 82 (154)
T ss_pred cEEEEEEecccHHHHHHHHHhheeEEEecccCcc
Confidence 4456666665544444433333333333333333
No 76
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=92.18 E-value=0.15 Score=26.49 Aligned_cols=18 Identities=44% Similarity=0.730 Sum_probs=10.3
Q ss_pred CCCCEEEcccCCCCCCCCh
Q 024632 167 VRLSAFDVSNNKLSGPIPA 185 (265)
Q Consensus 167 ~~L~~L~l~~N~l~g~~p~ 185 (265)
++|+.|++++|+++ .+|.
T Consensus 2 ~~L~~L~L~~N~l~-~lp~ 19 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPP 19 (26)
T ss_pred CCCCEEECCCCcCC-cCCH
Confidence 45666666666665 4444
No 77
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=92.18 E-value=0.15 Score=26.49 Aligned_cols=18 Identities=44% Similarity=0.730 Sum_probs=10.3
Q ss_pred CCCCEEEcccCCCCCCCCh
Q 024632 167 VRLSAFDVSNNKLSGPIPA 185 (265)
Q Consensus 167 ~~L~~L~l~~N~l~g~~p~ 185 (265)
++|+.|++++|+++ .+|.
T Consensus 2 ~~L~~L~L~~N~l~-~lp~ 19 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPP 19 (26)
T ss_pred CCCCEEECCCCcCC-cCCH
Confidence 45666666666665 4444
No 78
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=91.98 E-value=0.14 Score=34.65 Aligned_cols=26 Identities=8% Similarity=0.068 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhc
Q 024632 227 VGIGLGSGFASLVISFTGVCIWLKVT 252 (265)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (265)
+++++++++++++++++++++++|++
T Consensus 3 i~~~~~g~~~ll~~v~~~~~~~rr~~ 28 (75)
T PF14575_consen 3 IASIIVGVLLLLVLVIIVIVCFRRCK 28 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCTT--
T ss_pred EehHHHHHHHHHHhheeEEEEEeeEc
Confidence 33333343443344444555544443
No 79
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.52 E-value=0.17 Score=26.35 Aligned_cols=12 Identities=50% Similarity=0.667 Sum_probs=4.9
Q ss_pred cceeccccccCC
Q 024632 121 LAVLNLSANRLA 132 (265)
Q Consensus 121 L~~L~Ls~N~l~ 132 (265)
|++|+|++|+++
T Consensus 4 L~~L~L~~N~l~ 15 (26)
T smart00369 4 LRELDLSNNQLS 15 (26)
T ss_pred CCEEECCCCcCC
Confidence 344444444443
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.52 E-value=0.17 Score=26.35 Aligned_cols=12 Identities=50% Similarity=0.667 Sum_probs=4.9
Q ss_pred cceeccccccCC
Q 024632 121 LAVLNLSANRLA 132 (265)
Q Consensus 121 L~~L~Ls~N~l~ 132 (265)
|++|+|++|+++
T Consensus 4 L~~L~L~~N~l~ 15 (26)
T smart00370 4 LRELDLSNNQLS 15 (26)
T ss_pred CCEEECCCCcCC
Confidence 344444444443
No 81
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=91.48 E-value=0.055 Score=46.24 Aligned_cols=31 Identities=13% Similarity=0.143 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccccccc
Q 024632 229 IGLGSGFASLVISFTGVCIWLKVTEHKMALD 259 (265)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (265)
++++++++++++++++++|+||||+.++..+
T Consensus 151 paVVI~~iLLIA~iIa~icyrrkR~GK~~~e 181 (290)
T PF05454_consen 151 PAVVIAAILLIAGIIACICYRRKRKGKMSLE 181 (290)
T ss_dssp -------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhccccccc
Confidence 3333334444555666677666666666653
No 82
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=91.27 E-value=0.054 Score=38.46 Aligned_cols=21 Identities=33% Similarity=0.341 Sum_probs=13.8
Q ss_pred CCCCCcchhhHHHHHHHHHHH
Q 024632 217 KSKGLSVLAIVGIGLGSGFAS 237 (265)
Q Consensus 217 ~~~~~~~~~i~~~~~~~~~~~ 237 (265)
..++++...|++|++++++++
T Consensus 59 ~~~~ls~gaiagi~vg~~~~v 79 (96)
T PTZ00382 59 NRSGLSTGAIAGISVAVVAVV 79 (96)
T ss_pred CCCCcccccEEEEEeehhhHH
Confidence 345667778888877765544
No 83
>PF07213 DAP10: DAP10 membrane protein; InterPro: IPR009861 This family consists of several mammalian DAP10 membrane proteins. In activated mouse natural killer (NK) cells, the NKG2D receptor associates with two intracellular adaptors, DAP10 and DAP12, which trigger phosphatidyl inositol 3 kinase (PI3K) and Syk family protein tyrosine kinases, respectively. It has been suggested that the DAP10-PI3K pathway is sufficient to initiate NKG2D-mediated killing of target cells [].
Probab=91.24 E-value=0.48 Score=31.93 Aligned_cols=40 Identities=18% Similarity=0.031 Sum_probs=25.5
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhcccccccc
Q 024632 220 GLSVLAIVGIGLGSGFASLVISFTGVCIWLKVTEHKMALD 259 (265)
Q Consensus 220 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (265)
.++....++++++=+++.++++.++++|.+.|||++++.+
T Consensus 30 ~ls~g~LaGiV~~D~vlTLLIv~~vy~car~r~r~~~~~~ 69 (79)
T PF07213_consen 30 PLSPGLLAGIVAADAVLTLLIVLVVYYCARPRRRPTQEDD 69 (79)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCcccCC
Confidence 3566677788877677766666666666655555544444
No 84
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=91.19 E-value=0.039 Score=32.10 Aligned_cols=10 Identities=10% Similarity=0.414 Sum_probs=4.4
Q ss_pred HHHHHHhhhc
Q 024632 243 TGVCIWLKVT 252 (265)
Q Consensus 243 ~~~~~~~~~~ 252 (265)
+++++|+||+
T Consensus 30 ~~l~~~~rR~ 39 (40)
T PF08693_consen 30 AFLFFWYRRK 39 (40)
T ss_pred HHhheEEecc
Confidence 3444444443
No 85
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=91.17 E-value=0.6 Score=26.74 Aligned_cols=30 Identities=10% Similarity=0.010 Sum_probs=16.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 024632 226 IVGIGLGSGFASLVISFTGVCIWLKVTEHK 255 (265)
Q Consensus 226 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (265)
.++++++++++++++++..++...++||.+
T Consensus 5 ~IaIIv~V~vg~~iiii~~~~YaCcykk~~ 34 (38)
T PF02439_consen 5 TIAIIVAVVVGMAIIIICMFYYACCYKKHR 34 (38)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 345555555555555555555555555554
No 86
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=90.44 E-value=0.38 Score=36.28 Aligned_cols=9 Identities=33% Similarity=0.708 Sum_probs=4.7
Q ss_pred cccccCCCC
Q 024632 257 ALDQEGISM 265 (265)
Q Consensus 257 ~~~~~~~~~ 265 (265)
+.+|+.+|+
T Consensus 62 Ai~eediQf 70 (189)
T PF05568_consen 62 AIEEEDIQF 70 (189)
T ss_pred hhhhhcccc
Confidence 345666653
No 87
>PTZ00046 rifin; Provisional
Probab=89.05 E-value=0.48 Score=41.58 Aligned_cols=23 Identities=17% Similarity=0.042 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHhhhcccccc
Q 024632 235 FASLVISFTGVCIWLKVTEHKMA 257 (265)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~ 257 (265)
+++++++++.....|+|||++++
T Consensus 325 vVIVLIMvIIYLILRYRRKKKMk 347 (358)
T PTZ00046 325 VVIVLIMVIIYLILRYRRKKKMK 347 (358)
T ss_pred HHHHHHHHHHHHHHHhhhcchhH
Confidence 33333333333333444444443
No 88
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=88.87 E-value=0.51 Score=41.34 Aligned_cols=19 Identities=21% Similarity=0.046 Sum_probs=7.7
Q ss_pred HHHHHHHHHHhhhcccccc
Q 024632 239 VISFTGVCIWLKVTEHKMA 257 (265)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~ 257 (265)
+++++.....|+|||++++
T Consensus 324 LIMvIIYLILRYRRKKKMk 342 (353)
T TIGR01477 324 LIMVIIYLILRYRRKKKMK 342 (353)
T ss_pred HHHHHHHHHHHhhhcchhH
Confidence 3333333333444444443
No 89
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=84.82 E-value=0.16 Score=25.90 Aligned_cols=14 Identities=36% Similarity=0.591 Sum_probs=6.1
Q ss_pred CcCCEEEccCccCc
Q 024632 143 AYLNVIDLHDNLLT 156 (265)
Q Consensus 143 ~~L~~L~Ls~N~l~ 156 (265)
++|++|++++|+++
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 34555555555544
No 90
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=82.45 E-value=0.93 Score=36.74 Aligned_cols=14 Identities=14% Similarity=0.005 Sum_probs=5.6
Q ss_pred hhhHHHHHHHHHHH
Q 024632 224 LAIVGIGLGSGFAS 237 (265)
Q Consensus 224 ~~i~~~~~~~~~~~ 237 (265)
..+++++.|++.++
T Consensus 38 ~I~iaiVAG~~tVI 51 (221)
T PF08374_consen 38 KIMIAIVAGIMTVI 51 (221)
T ss_pred eeeeeeecchhhhH
Confidence 33344444443333
No 91
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=81.69 E-value=2.2 Score=29.33 Aligned_cols=13 Identities=8% Similarity=-0.194 Sum_probs=6.4
Q ss_pred HHHHHHHHhhhcc
Q 024632 241 SFTGVCIWLKVTE 253 (265)
Q Consensus 241 ~~~~~~~~~~~~~ 253 (265)
++.++.||.+|||
T Consensus 48 VilwfvCC~kRkr 60 (94)
T PF05393_consen 48 VILWFVCCKKRKR 60 (94)
T ss_pred HHHHHHHHHHhhh
Confidence 3345555555544
No 92
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=81.48 E-value=1 Score=23.66 Aligned_cols=12 Identities=33% Similarity=0.567 Sum_probs=5.2
Q ss_pred CCEEEccCccCc
Q 024632 145 LNVIDLHDNLLT 156 (265)
Q Consensus 145 L~~L~Ls~N~l~ 156 (265)
|+.|++++|+++
T Consensus 4 L~~L~vs~N~Lt 15 (26)
T smart00364 4 LKELNVSNNQLT 15 (26)
T ss_pred cceeecCCCccc
Confidence 344444444444
No 93
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=79.47 E-value=2.2 Score=36.14 Aligned_cols=16 Identities=25% Similarity=0.468 Sum_probs=7.4
Q ss_pred HHHHHHHHHhhhcccc
Q 024632 240 ISFTGVCIWLKVTEHK 255 (265)
Q Consensus 240 ~~~~~~~~~~~~~~~~ 255 (265)
+++++++.|.+||||+
T Consensus 273 vvliiLYiWlyrrRK~ 288 (295)
T TIGR01478 273 VVLIILYIWLYRRRKK 288 (295)
T ss_pred HHHHHHHHHHHHhhcc
Confidence 3334445555554443
No 94
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=79.42 E-value=1.9 Score=22.63 Aligned_cols=14 Identities=57% Similarity=0.800 Sum_probs=8.4
Q ss_pred CCCCEEECcCCCCC
Q 024632 95 TNLQSLDLSSNALT 108 (265)
Q Consensus 95 ~~L~~L~Ls~N~l~ 108 (265)
++|+.|++++|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 45666666666654
No 95
>PTZ00370 STEVOR; Provisional
Probab=79.25 E-value=2.3 Score=36.17 Aligned_cols=16 Identities=19% Similarity=0.418 Sum_probs=7.1
Q ss_pred HHHHHHHHHhhhcccc
Q 024632 240 ISFTGVCIWLKVTEHK 255 (265)
Q Consensus 240 ~~~~~~~~~~~~~~~~ 255 (265)
+++++.+.|.+|||++
T Consensus 269 vvliilYiwlyrrRK~ 284 (296)
T PTZ00370 269 VVLIILYIWLYRRRKN 284 (296)
T ss_pred HHHHHHHHHHHHhhcc
Confidence 3333445555444443
No 96
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=79.07 E-value=2.5 Score=39.87 Aligned_cols=33 Identities=18% Similarity=0.047 Sum_probs=17.5
Q ss_pred CCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHH
Q 024632 216 MKSKGLSVLAIVGIGLGSGFASLVISFTGVCIW 248 (265)
Q Consensus 216 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 248 (265)
.+....+.|.|+++++.+.++++++++++++++
T Consensus 262 ~~s~~~NlWII~gVlvPv~vV~~Iiiil~~~LC 294 (684)
T PF12877_consen 262 AKSPPNNLWIIAGVLVPVLVVLLIIIILYWKLC 294 (684)
T ss_pred CCCCCCCeEEEehHhHHHHHHHHHHHHHHHHHh
Confidence 344455667667776555555444444444443
No 97
>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].
Probab=78.93 E-value=2.3 Score=34.45 Aligned_cols=31 Identities=16% Similarity=0.207 Sum_probs=14.0
Q ss_pred hhHHHH-HHHHHHHHHHHHHHHHHHhhhcccc
Q 024632 225 AIVGIG-LGSGFASLVISFTGVCIWLKVTEHK 255 (265)
Q Consensus 225 ~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (265)
.+|+++ .|.++++++++..++++|.||..++
T Consensus 101 ~lI~lv~~g~~lLla~~~~~~Y~~~~Rrs~~~ 132 (202)
T PF06365_consen 101 TLIALVTSGSFLLLAILLGAGYCCHQRRSWSK 132 (202)
T ss_pred EEEehHHhhHHHHHHHHHHHHHHhhhhccCCc
Confidence 334444 4434444444444455655544333
No 98
>PHA03265 envelope glycoprotein D; Provisional
Probab=78.87 E-value=0.89 Score=39.53 Aligned_cols=32 Identities=25% Similarity=0.334 Sum_probs=14.6
Q ss_pred hhHHHHHHHHHH-HHHHHHHHHHHHhhhccccc
Q 024632 225 AIVGIGLGSGFA-SLVISFTGVCIWLKVTEHKM 256 (265)
Q Consensus 225 ~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 256 (265)
..+++++|++++ ++++..+.++|||||+..+|
T Consensus 348 ~~~g~~ig~~i~glv~vg~il~~~~rr~k~~~k 380 (402)
T PHA03265 348 TFVGISVGLGIAGLVLVGVILYVCLRRKKELKK 380 (402)
T ss_pred cccceEEccchhhhhhhhHHHHHHhhhhhhhhh
Confidence 334444443333 33444445566655544433
No 99
>PF04689 S1FA: DNA binding protein S1FA; InterPro: IPR006779 S1FA is an unusual small plant peptide of only 70 amino acids with a basic domain which contains a nuclear localization signal and a putative DNA binding helix. S1FA is highly conserved between dicotyledonous and monocotyledonous plants and may be a DNA-binding protein that specifically recognises the negative promoter element S1F [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=78.82 E-value=3 Score=26.78 Aligned_cols=34 Identities=15% Similarity=0.150 Sum_probs=23.0
Q ss_pred CCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024632 218 SKGLSVLAIVGIGLGSGFASLVISFTGVCIWLKV 251 (265)
Q Consensus 218 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (265)
.++++-..|+.++++..+++++++-++++.+.++
T Consensus 7 ~KGlnPGlIVLlvV~g~ll~flvGnyvlY~Yaqk 40 (69)
T PF04689_consen 7 AKGLNPGLIVLLVVAGLLLVFLVGNYVLYVYAQK 40 (69)
T ss_pred ccCCCCCeEEeehHHHHHHHHHHHHHHHHHHHhh
Confidence 3567777888888887777766666665555443
No 100
>PF10873 DUF2668: Protein of unknown function (DUF2668); InterPro: IPR022640 Members in this family of proteins are annotated as cysteine and tyrosine-rich protein 1, however currently no function is known [].
Probab=77.52 E-value=2 Score=32.46 Aligned_cols=29 Identities=34% Similarity=0.421 Sum_probs=17.9
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHHHHHHH
Q 024632 219 KGLSVLAIVGIGLGSGFASLVISFTGVCI 247 (265)
Q Consensus 219 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 247 (265)
..++...|.+|++|++++..+++.+++++
T Consensus 56 ~~lsgtAIaGIVfgiVfimgvva~i~icv 84 (155)
T PF10873_consen 56 DVLSGTAIAGIVFGIVFIMGVVAGIAICV 84 (155)
T ss_pred cccccceeeeeehhhHHHHHHHHHHHHHH
Confidence 34566677788877776655555554433
No 101
>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins. Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.
Probab=77.20 E-value=0.8 Score=33.79 Aligned_cols=15 Identities=13% Similarity=0.507 Sum_probs=0.0
Q ss_pred HHHHHHhhhcccccc
Q 024632 243 TGVCIWLKVTEHKMA 257 (265)
Q Consensus 243 ~~~~~~~~~~~~~~~ 257 (265)
..+..|+|.|||++.
T Consensus 96 sg~lv~rrcrrr~~~ 110 (129)
T PF12191_consen 96 SGFLVWRRCRRREKF 110 (129)
T ss_dssp ---------------
T ss_pred HHHHHHhhhhccccC
Confidence 344555555555444
No 102
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=77.18 E-value=4.5 Score=30.00 Aligned_cols=36 Identities=6% Similarity=-0.029 Sum_probs=20.1
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 024632 220 GLSVLAIVGIGLGSGFASLVISFTGVCIWLKVTEHK 255 (265)
Q Consensus 220 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (265)
.-....|+..++++++++.+++.+++.+++||.+..
T Consensus 63 ~~~i~~Ii~gv~aGvIg~Illi~y~irR~~Kk~~~~ 98 (122)
T PF01102_consen 63 EPAIIGIIFGVMAGVIGIILLISYCIRRLRKKSSSD 98 (122)
T ss_dssp -TCHHHHHHHHHHHHHHHHHHHHHHHHHHS------
T ss_pred ccceeehhHHHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 334666666666666666677778888888886543
No 103
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=76.39 E-value=1.3 Score=48.57 Aligned_cols=34 Identities=24% Similarity=0.254 Sum_probs=27.9
Q ss_pred EccCccCcccCChhccCCCCCCEEEcccCCCCCC
Q 024632 149 DLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGP 182 (265)
Q Consensus 149 ~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ 182 (265)
||++|+|+...+..|..+++|+.|+|++|.+...
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CD 34 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECD 34 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccccc
Confidence 6889999955556778899999999999998754
No 104
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=75.81 E-value=0.036 Score=51.11 Aligned_cols=135 Identities=24% Similarity=0.265 Sum_probs=76.3
Q ss_pred CeEEEEeeCCCccc----cCCccCcCCCCCCEEECcCCCCCC----CCCCCcc----cCcccceeccccccCCCCC----
Q 024632 72 RIYKLSLTNLSLQG----SISPYLSNCTNLQSLDLSSNALTG----SIPADLQ----YLVNLAVLNLSANRLAGEI---- 135 (265)
Q Consensus 72 ~l~~L~L~~n~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~----~~p~~l~----~l~~L~~L~Ls~N~l~~~~---- 135 (265)
.+++|++..+.++. .+...+.....++++|++.|.+.. .++..+. ...++++|.++++.++...
T Consensus 145 ~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l 224 (478)
T KOG4308|consen 145 LLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALL 224 (478)
T ss_pred HHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHH
Confidence 34455555555542 233445556677777887777631 1222222 3567778888887776110
Q ss_pred chHhhhCCc-CCEEEccCccCccc----CChhccCC-CCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCC
Q 024632 136 PPQLTLCAY-LNVIDLHDNLLTGQ----IPQQLGLL-VRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNK 206 (265)
Q Consensus 136 p~~~~~l~~-L~~L~Ls~N~l~~~----~p~~~~~l-~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~ 206 (265)
...+...+. +..+++..|++.+. +...+..+ ..++.++++.|.++..-...+.+.....+.++.+.+..|+
T Consensus 225 ~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~ 301 (478)
T KOG4308|consen 225 DEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNP 301 (478)
T ss_pred HHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCc
Confidence 011223334 55677888877632 22334444 5678888888888766555555443334556666676665
No 105
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=75.66 E-value=1.9 Score=30.88 Aligned_cols=10 Identities=40% Similarity=0.129 Sum_probs=3.7
Q ss_pred hHHHHHHHHH
Q 024632 226 IVGIGLGSGF 235 (265)
Q Consensus 226 i~~~~~~~~~ 235 (265)
++.+++.+++
T Consensus 63 iili~lls~v 72 (101)
T PF06024_consen 63 IILISLLSFV 72 (101)
T ss_pred chHHHHHHHH
Confidence 3333333333
No 106
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=75.39 E-value=3.1 Score=35.96 Aligned_cols=32 Identities=16% Similarity=-0.099 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Q 024632 227 VGIGLGSGFASLVISFTGVCIWLKVTEHKMAL 258 (265)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (265)
.++++.++|++++++.+++..||+++.++|.+
T Consensus 261 SiiaIliIVLIMvIIYLILRYRRKKKmkKKlQ 292 (299)
T PF02009_consen 261 SIIAILIIVLIMVIIYLILRYRRKKKMKKKLQ 292 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 34556677777888999999999888776643
No 107
>PF15102 TMEM154: TMEM154 protein family
Probab=75.29 E-value=1.1 Score=34.22 Aligned_cols=7 Identities=14% Similarity=-0.159 Sum_probs=3.2
Q ss_pred HHHHHHH
Q 024632 227 VGIGLGS 233 (265)
Q Consensus 227 ~~~~~~~ 233 (265)
+.++++.
T Consensus 58 iLmIlIP 64 (146)
T PF15102_consen 58 ILMILIP 64 (146)
T ss_pred EEEEeHH
Confidence 4444444
No 108
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=74.40 E-value=1.3 Score=40.27 Aligned_cols=89 Identities=26% Similarity=0.267 Sum_probs=41.2
Q ss_pred CcCCCCCCEEECcCC-CCCCCCC----CCcccCcccceecccccc-CCCCCchHhh-hCCcCCEEEccCcc-Cccc-CCh
Q 024632 91 LSNCTNLQSLDLSSN-ALTGSIP----ADLQYLVNLAVLNLSANR-LAGEIPPQLT-LCAYLNVIDLHDNL-LTGQ-IPQ 161 (265)
Q Consensus 91 l~~l~~L~~L~Ls~N-~l~~~~p----~~l~~l~~L~~L~Ls~N~-l~~~~p~~~~-~l~~L~~L~Ls~N~-l~~~-~p~ 161 (265)
....+.|+.|+++++ ......+ .....+.+|+.|++++.. ++...-..+. .+++|++|.+.++. ++.. +-.
T Consensus 210 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~ 289 (482)
T KOG1947|consen 210 ALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVS 289 (482)
T ss_pred HhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHH
Confidence 344566666666652 1110111 122334566666666665 3322222222 25566666655554 3321 111
Q ss_pred hccCCCCCCEEEcccCCC
Q 024632 162 QLGLLVRLSAFDVSNNKL 179 (265)
Q Consensus 162 ~~~~l~~L~~L~l~~N~l 179 (265)
....++.|++|+++.+..
T Consensus 290 i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 290 IAERCPSLRELDLSGCHG 307 (482)
T ss_pred HHHhcCcccEEeeecCcc
Confidence 223455666666665543
No 109
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=73.60 E-value=2.7 Score=36.47 Aligned_cols=11 Identities=36% Similarity=0.712 Sum_probs=4.8
Q ss_pred hHHHHHHHHHH
Q 024632 226 IVGIGLGSGFA 236 (265)
Q Consensus 226 i~~~~~~~~~~ 236 (265)
++-|++|++++
T Consensus 272 ~vPIaVG~~La 282 (306)
T PF01299_consen 272 LVPIAVGAALA 282 (306)
T ss_pred hHHHHHHHHHH
Confidence 44444444433
No 110
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=73.07 E-value=2 Score=34.20 Aligned_cols=7 Identities=43% Similarity=0.491 Sum_probs=2.7
Q ss_pred hhHHHHH
Q 024632 225 AIVGIGL 231 (265)
Q Consensus 225 ~i~~~~~ 231 (265)
.+++|++
T Consensus 80 iivgvi~ 86 (179)
T PF13908_consen 80 IIVGVIC 86 (179)
T ss_pred eeeehhh
Confidence 3333433
No 111
>PF15065 NCU-G1: Lysosomal transcription factor, NCU-G1
Probab=72.22 E-value=1.7 Score=38.39 Aligned_cols=25 Identities=28% Similarity=0.488 Sum_probs=12.5
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHHH
Q 024632 220 GLSVLAIVGIGLGSGFASLVISFTG 244 (265)
Q Consensus 220 ~~~~~~i~~~~~~~~~~~~~~~~~~ 244 (265)
.++...+..+++|.++-++++++..
T Consensus 314 ~~S~lvi~i~~vgLG~P~l~li~Gg 338 (350)
T PF15065_consen 314 SFSPLVIMIMAVGLGVPLLLLILGG 338 (350)
T ss_pred chhHHHHHHHHHHhhHHHHHHHHhh
Confidence 4556655555555554444333333
No 112
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=72.14 E-value=3.6 Score=21.76 Aligned_cols=11 Identities=55% Similarity=0.730 Sum_probs=5.2
Q ss_pred cceeccccccC
Q 024632 121 LAVLNLSANRL 131 (265)
Q Consensus 121 L~~L~Ls~N~l 131 (265)
|++|||++|.+
T Consensus 4 L~~LdL~~N~i 14 (28)
T smart00368 4 LRELDLSNNKL 14 (28)
T ss_pred cCEEECCCCCC
Confidence 44444444444
No 113
>PF06697 DUF1191: Protein of unknown function (DUF1191); InterPro: IPR010605 This family contains hypothetical plant proteins of unknown function.
Probab=69.07 E-value=2.4 Score=36.01 Aligned_cols=16 Identities=25% Similarity=0.237 Sum_probs=7.4
Q ss_pred CCccCcCCCCCCEEEC
Q 024632 87 ISPYLSNCTNLQSLDL 102 (265)
Q Consensus 87 ~p~~l~~l~~L~~L~L 102 (265)
+|+...-.+.-+.+.+
T Consensus 71 IP~gv~~~P~v~Rl~l 86 (278)
T PF06697_consen 71 IPPGVVVQPYVERLVL 86 (278)
T ss_pred cCCcceecCcceEEEE
Confidence 4444444444445444
No 114
>PF14610 DUF4448: Protein of unknown function (DUF4448)
Probab=68.37 E-value=1.5 Score=35.29 Aligned_cols=24 Identities=21% Similarity=0.414 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 024632 227 VGIGLGSGFASLVISFTGVCIWLK 250 (265)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~ 250 (265)
++|++-+++++++++++++++|.|
T Consensus 160 laI~lPvvv~~~~~~~~~~~~~~R 183 (189)
T PF14610_consen 160 LAIALPVVVVVLALIMYGFFFWNR 183 (189)
T ss_pred EEEEccHHHHHHHHHHHhhheeec
Confidence 334444444444444444444433
No 115
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=68.35 E-value=4.4 Score=34.77 Aligned_cols=15 Identities=40% Similarity=0.197 Sum_probs=8.0
Q ss_pred CCCcchhhHHHHHHH
Q 024632 219 KGLSVLAIVGIGLGS 233 (265)
Q Consensus 219 ~~~~~~~i~~~~~~~ 233 (265)
++++...+++|.+++
T Consensus 222 ~~l~~G~VVlIslAi 236 (281)
T PF12768_consen 222 KKLSRGFVVLISLAI 236 (281)
T ss_pred ccccceEEEEEehHH
Confidence 555666665554443
No 116
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.20 E-value=0.81 Score=37.08 Aligned_cols=80 Identities=18% Similarity=0.088 Sum_probs=39.3
Q ss_pred CCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCC-CCCcc-cCcccceecccccc-CCCCCchHhhhCCcCCE
Q 024632 71 GRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSI-PADLQ-YLVNLAVLNLSANR-LAGEIPPQLTLCAYLNV 147 (265)
Q Consensus 71 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~l~-~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~ 147 (265)
..++.++-++..|...=-+.+.+++.++.|.+.++.--+.. -+.++ -.++|+.|++++|. |+..--..+..+++|+.
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 34677777777776433344566666666666555422110 00111 23566666666553 43222233444455554
Q ss_pred EEc
Q 024632 148 IDL 150 (265)
Q Consensus 148 L~L 150 (265)
|.+
T Consensus 181 L~l 183 (221)
T KOG3864|consen 181 LHL 183 (221)
T ss_pred HHh
Confidence 443
No 117
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=67.98 E-value=2.9 Score=37.79 Aligned_cols=21 Identities=33% Similarity=0.384 Sum_probs=15.7
Q ss_pred CCCCCcchhhHHHHHHHHHHH
Q 024632 217 KSKGLSVLAIVGIGLGSGFAS 237 (265)
Q Consensus 217 ~~~~~~~~~i~~~~~~~~~~~ 237 (265)
..++++...|++|.++++|||
T Consensus 360 n~s~LstgaIaGIsvavvvvV 380 (397)
T PF03302_consen 360 NKSGLSTGAIAGISVAVVVVV 380 (397)
T ss_pred ccccccccceeeeeehhHHHH
Confidence 456788999999988766543
No 118
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=67.50 E-value=0.94 Score=32.74 Aligned_cols=10 Identities=30% Similarity=0.361 Sum_probs=1.4
Q ss_pred hHHHHHHHHH
Q 024632 226 IVGIGLGSGF 235 (265)
Q Consensus 226 i~~~~~~~~~ 235 (265)
.++|++.+++
T Consensus 26 AaGIGiL~VI 35 (118)
T PF14991_consen 26 AAGIGILIVI 35 (118)
T ss_dssp --SSS-----
T ss_pred hccceeHHHH
Confidence 3444443333
No 119
>PF14979 TMEM52: Transmembrane 52
Probab=63.67 E-value=26 Score=26.71 Aligned_cols=25 Identities=28% Similarity=0.365 Sum_probs=12.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Q 024632 224 LAIVGIGLGSGFASLVISFTGVCIW 248 (265)
Q Consensus 224 ~~i~~~~~~~~~~~~~~~~~~~~~~ 248 (265)
++.+.+++.++++++++++...|++
T Consensus 19 LWyIwLill~~~llLLCG~ta~C~r 43 (154)
T PF14979_consen 19 LWYIWLILLIGFLLLLCGLTASCVR 43 (154)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444455556666555444
No 120
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=63.14 E-value=23 Score=25.21 Aligned_cols=27 Identities=30% Similarity=0.447 Sum_probs=17.3
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHHHHH
Q 024632 220 GLSVLAIVGIGLGSGFASLVISFTGVC 246 (265)
Q Consensus 220 ~~~~~~i~~~~~~~~~~~~~~~~~~~~ 246 (265)
+.++...++++++++++.+++++++-|
T Consensus 14 g~sW~~LVGVv~~al~~SlLIalaaKC 40 (102)
T PF15176_consen 14 GRSWPFLVGVVVTALVTSLLIALAAKC 40 (102)
T ss_pred CcccHhHHHHHHHHHHHHHHHHHHHHh
Confidence 455666677777777766666666543
No 121
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=59.88 E-value=5.7 Score=37.04 Aligned_cols=36 Identities=36% Similarity=0.358 Sum_probs=16.9
Q ss_pred CCCeEEEEeeCCCcccc--CCccCcCCCCCCEEECcCC
Q 024632 70 NGRIYKLSLTNLSLQGS--ISPYLSNCTNLQSLDLSSN 105 (265)
Q Consensus 70 ~~~l~~L~L~~n~l~~~--~p~~l~~l~~L~~L~Ls~N 105 (265)
.+.+..++|++|++... +..--...++|..|+|++|
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 34555666666665411 1111122345555666655
No 122
>PHA03286 envelope glycoprotein E; Provisional
Probab=59.20 E-value=9.8 Score=34.52 Aligned_cols=26 Identities=8% Similarity=0.220 Sum_probs=10.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024632 226 IVGIGLGSGFASLVISFTGVCIWLKV 251 (265)
Q Consensus 226 i~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (265)
+..+++|+++++.++++...+.++||
T Consensus 393 ~~s~~~~~~~~~~~~~~~~~~~~~r~ 418 (492)
T PHA03286 393 VSSMAAGAILVVLLFALCIAGLYRRR 418 (492)
T ss_pred HHHHHHHHHHHHHHHHHHhHhHhhhh
Confidence 33444444444444444433333333
No 123
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=59.04 E-value=14 Score=30.14 Aligned_cols=19 Identities=16% Similarity=0.153 Sum_probs=8.7
Q ss_pred cchhhHHHHHHHHHHHHHH
Q 024632 222 SVLAIVGIGLGSGFASLVI 240 (265)
Q Consensus 222 ~~~~i~~~~~~~~~~~~~~ 240 (265)
-...|++.+++++++++++
T Consensus 39 I~iaiVAG~~tVILVI~i~ 57 (221)
T PF08374_consen 39 IMIAIVAGIMTVILVIFIV 57 (221)
T ss_pred eeeeeecchhhhHHHHHHH
Confidence 3344444444455555444
No 124
>PF01372 Melittin: Melittin; InterPro: IPR002116 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an Arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Api m 3. Melittin is the principal protein component of the venom of the honeybee, Apis mellifera. It inhibits protein kinase C, Ca2+/calmodulin-dependent protein kinase II, myosin light chain kinase and Na+/K+-ATPase (synaptosomal membrane) and is a cell membrane lytic factor. Melittin is a small peptide with no disulphide bridge; the N-terminal part of the molecule is predominantly hydrophobic and the C-terminal part is hydrophilic and strongly basic. The molecular mechanisms underlying the various effects of melittin on membranes have not been completely defined and much of the evidence indicates that different molecular mechanisms may underlie different actions of the peptide []. Extensive work with melittin has shown that the venom has multiple effects, probably, as a result of its interaction with negatively changed phospholipids. It inhibits well known transport pumps such as the Na+-K+-ATPase and the H+-K+-ATPase. Melittin increases the permeability of cell membranes to ions, particularly Na+ and indirectly Ca2+, because of the Na+-Ca2+-exchange. This effect results in marked morphological and functional changes, particularly in excitable tissues such as cardiac myocytes. In some other tissues, e.g., cornea, not only Na+ but Cl- permeability is also increased by melittin. Similar effects to melittin on H+-K+-ATPase have been found with the synthetic amphipathic polypeptide Trp-3 []. The study of melittin in model membranes has been useful for the development of methodology for determination of membrane protein structures. A molecular dynamics simulation of melittin in a hydrated dipalmitoylphosphatidylcholine (DPPC) bilayer was carried out. The effect of melittin on the surrounding membrane was localised to its immediate vicinity, and its asymmetry with respect to the two layers may be a result of the fact that it is not fully transmembranal. Melittin's hydrophilic C terminus anchors it at the extracellular interface, leaving the N terminus "loose" in the lower layer of the membrane [].; GO: 0004860 protein kinase inhibitor activity, 0005576 extracellular region; PDB: 3QRX_B 2MLT_A 1BH1_A.
Probab=58.19 E-value=12 Score=19.12 Aligned_cols=18 Identities=17% Similarity=0.418 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHhhhccc
Q 024632 237 SLVISFTGVCIWLKVTEH 254 (265)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~ 254 (265)
++.-.+-.++.|.+++|+
T Consensus 8 vla~~LP~lISWIK~kr~ 25 (26)
T PF01372_consen 8 VLATGLPTLISWIKNKRQ 25 (26)
T ss_dssp HHHTHHHHHHHHHHHHHH
T ss_pred HHHhcChHHHHHHHHHhc
Confidence 333444466777777654
No 125
>PF13956 Ibs_toxin: Toxin Ibs, type I toxin-antitoxin system
Probab=56.78 E-value=8.2 Score=18.19 Aligned_cols=14 Identities=36% Similarity=0.420 Sum_probs=9.6
Q ss_pred CchhHHHHHHHHHH
Q 024632 1 MAGCTLILFFLLTC 14 (265)
Q Consensus 1 ~~~~~l~l~l~l~~ 14 (265)
|+.++++++.++..
T Consensus 1 MMk~vIIlvvLLli 14 (19)
T PF13956_consen 1 MMKLVIILVVLLLI 14 (19)
T ss_pred CceehHHHHHHHhc
Confidence 67777777666654
No 126
>PF06809 NPDC1: Neural proliferation differentiation control-1 protein (NPDC1); InterPro: IPR009635 This family consists of several neural proliferation differentiation control-1 (NPDC1) proteins. NPDC1 plays a role in the control of neural cell proliferation and differentiation. It has been suggested that NPDC1 may be involved in the development of several secretion glands. This family also contains the C-terminal region of the Caenorhabditis elegans protein CAB-1 (Q93249 from SWISSPROT) which is known to interact with AEX-3 [].; GO: 0016021 integral to membrane
Probab=56.35 E-value=7 Score=33.73 Aligned_cols=19 Identities=5% Similarity=0.125 Sum_probs=9.4
Q ss_pred HHHHHHHHHhhhccccccc
Q 024632 240 ISFTGVCIWLKVTEHKMAL 258 (265)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~ 258 (265)
.+++..+||.|-.|+.+..
T Consensus 213 Aliva~~cW~Rlqr~~rla 231 (341)
T PF06809_consen 213 ALIVAGYCWYRLQREIRLA 231 (341)
T ss_pred HHHHhhheEEEeccccccc
Confidence 3344555665555544443
No 127
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=56.00 E-value=4 Score=29.22 Aligned_cols=29 Identities=10% Similarity=0.028 Sum_probs=16.2
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHHHHHHH
Q 024632 219 KGLSVLAIVGIGLGSGFASLVISFTGVCI 247 (265)
Q Consensus 219 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 247 (265)
.......++.+++.++++++.++..+++.
T Consensus 59 ~~~~iili~lls~v~IlVily~IyYFVIL 87 (101)
T PF06024_consen 59 NNGNIILISLLSFVCILVILYAIYYFVIL 87 (101)
T ss_pred ccccchHHHHHHHHHHHHHHhhheEEEEE
Confidence 34456667777766766655443333333
No 128
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=55.92 E-value=5.4 Score=27.84 Aligned_cols=9 Identities=22% Similarity=0.154 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 024632 240 ISFTGVCIW 248 (265)
Q Consensus 240 ~~~~~~~~~ 248 (265)
++.++++|+
T Consensus 57 ii~Lv~CC~ 65 (98)
T PF07204_consen 57 IIALVCCCR 65 (98)
T ss_pred HHHHHHHhh
Confidence 333333443
No 129
>PF13268 DUF4059: Protein of unknown function (DUF4059)
Probab=55.90 E-value=17 Score=23.97 Aligned_cols=18 Identities=6% Similarity=0.200 Sum_probs=8.5
Q ss_pred HHHHHhhhcccccccccc
Q 024632 244 GVCIWLKVTEHKMALDQE 261 (265)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~ 261 (265)
++..||.+||+-|...|+
T Consensus 26 ~wi~~Ra~~~~DKT~~eR 43 (72)
T PF13268_consen 26 IWILWRALRKKDKTAKER 43 (72)
T ss_pred HHHHHHHHHcCCCcHHHH
Confidence 344444445555554443
No 130
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=55.72 E-value=3.5 Score=37.49 Aligned_cols=111 Identities=24% Similarity=0.252 Sum_probs=66.4
Q ss_pred CCCCCEEECcCCCCCCC--CCCCcccCcccceeccccc-cCCCCCc----hHhhhCCcCCEEEccCcc-CcccCChhcc-
Q 024632 94 CTNLQSLDLSSNALTGS--IPADLQYLVNLAVLNLSAN-RLAGEIP----PQLTLCAYLNVIDLHDNL-LTGQIPQQLG- 164 (265)
Q Consensus 94 l~~L~~L~Ls~N~l~~~--~p~~l~~l~~L~~L~Ls~N-~l~~~~p----~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~- 164 (265)
.+.|+.+.+....--.. +-......+.|+.|+++++ ......+ .....+++|+.+++++.. ++...=..+.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 57778887776532212 2223456789999999873 1111111 233456889999999888 5533222333
Q ss_pred CCCCCCEEEcccCC-CCCCCChhhhccCCCCCCCCCCCCCCCCC
Q 024632 165 LLVRLSAFDVSNNK-LSGPIPASLGNRSGNLPKFNASSFEGNKD 207 (265)
Q Consensus 165 ~l~~L~~L~l~~N~-l~g~~p~~~~~~~~~l~~l~~~~~~~N~~ 207 (265)
.+++|+.|.+.++. ++ ...+.......+.|+.+++++...
T Consensus 267 ~c~~L~~L~l~~c~~lt---~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLT---DEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hCCCcceEccCCCCccc---hhHHHHHHHhcCcccEEeeecCcc
Confidence 37889999977665 44 334444334466677777776544
No 131
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=55.37 E-value=3.9 Score=37.42 Aligned_cols=27 Identities=11% Similarity=-0.220 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024632 225 AIVGIGLGSGFASLVISFTGVCIWLKV 251 (265)
Q Consensus 225 ~i~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (265)
.+++.++++++++++++++++++++||
T Consensus 356 ~vVlgvavlivVv~viv~vc~~~rrrR 382 (439)
T PF02480_consen 356 GVVLGVAVLIVVVGVIVWVCLRCRRRR 382 (439)
T ss_dssp ---------------------------
T ss_pred HHHHHHHHHHHHHHHHhheeeeehhcc
Confidence 333344444444434444444444333
No 132
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=55.01 E-value=13 Score=32.80 Aligned_cols=29 Identities=17% Similarity=-0.028 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccccc
Q 024632 229 IGLGSGFASLVISFTGVCIWLKVTEHKMA 257 (265)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (265)
+++.++|++.+++.+++..||+++.+++-
T Consensus 317 IAIvvIVLIMvIIYLILRYRRKKKMkKKL 345 (353)
T TIGR01477 317 IAILIIVLIMVIIYLILRYRRKKKMKKKL 345 (353)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcchhHHHH
Confidence 34455677888999999999998877764
No 133
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=53.94 E-value=14 Score=23.93 Aligned_cols=14 Identities=14% Similarity=0.021 Sum_probs=5.6
Q ss_pred chhhHHHHHHHHHH
Q 024632 223 VLAIVGIGLGSGFA 236 (265)
Q Consensus 223 ~~~i~~~~~~~~~~ 236 (265)
...++.++++++++
T Consensus 20 l~l~il~~f~~G~l 33 (68)
T PF06305_consen 20 LGLLILIAFLLGAL 33 (68)
T ss_pred HHHHHHHHHHHHHH
Confidence 33334444444433
No 134
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=53.83 E-value=19 Score=30.78 Aligned_cols=27 Identities=19% Similarity=0.014 Sum_probs=14.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024632 225 AIVGIGLGSGFASLVISFTGVCIWLKV 251 (265)
Q Consensus 225 ~i~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (265)
.|.+.++.+.++++++..+|++.|||+
T Consensus 262 giaalvllil~vvliiLYiWlyrrRK~ 288 (295)
T TIGR01478 262 GIAALVLIILTVVLIILYIWLYRRRKK 288 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 455555555555555555555555444
No 135
>PTZ00046 rifin; Provisional
Probab=53.26 E-value=14 Score=32.73 Aligned_cols=30 Identities=13% Similarity=-0.066 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccccc
Q 024632 228 GIGLGSGFASLVISFTGVCIWLKVTEHKMA 257 (265)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (265)
++++.++|++.+++.+++..||+++.+++-
T Consensus 321 iiAIvVIVLIMvIIYLILRYRRKKKMkKKL 350 (358)
T PTZ00046 321 IVAIVVIVLIMVIIYLILRYRRKKKMKKKL 350 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcchhHHHH
Confidence 345667777788889999999998877764
No 136
>PTZ00370 STEVOR; Provisional
Probab=52.53 E-value=18 Score=30.91 Aligned_cols=27 Identities=19% Similarity=0.007 Sum_probs=15.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024632 225 AIVGIGLGSGFASLVISFTGVCIWLKV 251 (265)
Q Consensus 225 ~i~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (265)
.|++.++.+.++++++..+|.+.||++
T Consensus 258 giaalvllil~vvliilYiwlyrrRK~ 284 (296)
T PTZ00370 258 GIAALVLLILAVVLIILYIWLYRRRKN 284 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 455555555555555555566655544
No 137
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=51.99 E-value=7.5 Score=30.82 Aligned_cols=10 Identities=40% Similarity=0.408 Sum_probs=4.7
Q ss_pred hHHHHHHHHH
Q 024632 226 IVGIGLGSGF 235 (265)
Q Consensus 226 i~~~~~~~~~ 235 (265)
+++|++++++
T Consensus 77 ~~~iivgvi~ 86 (179)
T PF13908_consen 77 ITGIIVGVIC 86 (179)
T ss_pred eeeeeeehhh
Confidence 4445554444
No 138
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=48.95 E-value=27 Score=29.98 Aligned_cols=35 Identities=29% Similarity=0.373 Sum_probs=22.3
Q ss_pred CCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024632 217 KSKGLSVLAIVGIGLGSGFASLVISFTGVCIWLKV 251 (265)
Q Consensus 217 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (265)
..++..++.-+++++|.+++++++.++..+++|||
T Consensus 224 l~~G~VVlIslAiALG~v~ll~l~Gii~~~~~r~~ 258 (281)
T PF12768_consen 224 LSRGFVVLISLAIALGTVFLLVLIGIILAYIRRRR 258 (281)
T ss_pred ccceEEEEEehHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34456666667788888777666666555554443
No 139
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function.
Probab=48.95 E-value=27 Score=34.24 Aligned_cols=7 Identities=43% Similarity=0.178 Sum_probs=3.2
Q ss_pred CCChhhh
Q 024632 182 PIPASLG 188 (265)
Q Consensus 182 ~~p~~~~ 188 (265)
.||.+.+
T Consensus 208 ~IPAW~F 214 (807)
T PF10577_consen 208 SIPAWRF 214 (807)
T ss_pred eeeeeEe
Confidence 4554433
No 140
>PF05808 Podoplanin: Podoplanin; InterPro: IPR008783 This family consists of several mammalian podoplanin-like proteins which are thought to control specifically the unique shape of podocytes [].; GO: 0016021 integral to membrane; PDB: 3IET_X.
Probab=48.88 E-value=5.7 Score=30.80 Aligned_cols=32 Identities=28% Similarity=0.296 Sum_probs=0.0
Q ss_pred CCCCCcchhhHHHHHHHHHHHHHHHHHHHHHH
Q 024632 217 KSKGLSVLAIVGIGLGSGFASLVISFTGVCIW 248 (265)
Q Consensus 217 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 248 (265)
.+.++....+++|++|+++.+.+++-+++.+-
T Consensus 122 ek~GL~T~tLVGIIVGVLlaIG~igGIIivvv 153 (162)
T PF05808_consen 122 EKDGLSTVTLVGIIVGVLLAIGFIGGIIIVVV 153 (162)
T ss_dssp --------------------------------
T ss_pred ccCCcceeeeeeehhhHHHHHHHHhheeeEEe
Confidence 35567788888888887776655555544443
No 141
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=48.68 E-value=17 Score=27.06 Aligned_cols=10 Identities=20% Similarity=0.255 Sum_probs=4.2
Q ss_pred HHHHHhhhcc
Q 024632 244 GVCIWLKVTE 253 (265)
Q Consensus 244 ~~~~~~~~~~ 253 (265)
++++|.||||
T Consensus 121 ~~yr~~r~~~ 130 (139)
T PHA03099 121 SVYRFTRRTK 130 (139)
T ss_pred hhheeeeccc
Confidence 3444444333
No 142
>PF14914 LRRC37AB_C: LRRC37A/B like protein 1 C-terminal domain
Probab=48.25 E-value=36 Score=26.00 Aligned_cols=21 Identities=24% Similarity=0.205 Sum_probs=10.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHH
Q 024632 224 LAIVGIGLGSGFASLVISFTG 244 (265)
Q Consensus 224 ~~i~~~~~~~~~~~~~~~~~~ 244 (265)
..|+++.+.+++.+++++|..
T Consensus 120 klilaisvtvv~~iliii~CL 140 (154)
T PF14914_consen 120 KLILAISVTVVVMILIIIFCL 140 (154)
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 345555555554444443333
No 143
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=47.52 E-value=36 Score=25.21 Aligned_cols=9 Identities=11% Similarity=0.021 Sum_probs=3.5
Q ss_pred hhhHHHHHH
Q 024632 224 LAIVGIGLG 232 (265)
Q Consensus 224 ~~i~~~~~~ 232 (265)
+.+...++.
T Consensus 35 WNysiL~Ls 43 (125)
T PF15048_consen 35 WNYSILALS 43 (125)
T ss_pred cchHHHHHH
Confidence 333344333
No 144
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=47.33 E-value=55 Score=20.70 Aligned_cols=13 Identities=23% Similarity=0.151 Sum_probs=4.9
Q ss_pred HHHHHHHHHhhhc
Q 024632 240 ISFTGVCIWLKVT 252 (265)
Q Consensus 240 ~~~~~~~~~~~~~ 252 (265)
+.|..+.+|...+
T Consensus 21 ~~Ftl~IRri~~~ 33 (58)
T PF13314_consen 21 ASFTLFIRRILIN 33 (58)
T ss_pred HHHHHHHHHHHHh
Confidence 3333333333333
No 145
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=47.31 E-value=12 Score=35.00 Aligned_cols=62 Identities=23% Similarity=0.312 Sum_probs=30.2
Q ss_pred CcccceeccccccCCCCCc---hHhhhCCcCCEEEccCc--cCcccCC-hhccCCCCCCEEEcccCCCCC
Q 024632 118 LVNLAVLNLSANRLAGEIP---PQLTLCAYLNVIDLHDN--LLTGQIP-QQLGLLVRLSAFDVSNNKLSG 181 (265)
Q Consensus 118 l~~L~~L~Ls~N~l~~~~p---~~~~~l~~L~~L~Ls~N--~l~~~~p-~~~~~l~~L~~L~l~~N~l~g 181 (265)
.+.+..+.|++|++.. +. .--...++|..|+|++| .+..... ..++. ..|+.|-+.+|++..
T Consensus 217 ~p~i~sl~lsnNrL~~-Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~-l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYH-LDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKG-LPLEELVLEGNPLCT 284 (585)
T ss_pred Ccceeeeecccchhhc-hhhhhHHHHhcchhheeecccchhhhcchhhhhhhcC-CCHHHeeecCCcccc
Confidence 3455566667776652 21 11123456677777776 3321100 11222 236666777776653
No 146
>PF02699 YajC: Preprotein translocase subunit; InterPro: IPR003849 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins []. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone (SecB), ATPase (SecA), an integral membrane complex (SecY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. Other cytoplasmic/periplasmic proteins play a part in preprotein translocase activity, namely YidC and YajC []. The latter is bound in a complex to SecD and SecF, and plays a part in stabilising and regulating secretion through the SecYEG integral membrane component via SecA []. Homologues of the YajC gene have been found in a range of pathogenic and commensal microbes. Brucella abortis YajC- and SecD-like proteins were shown to stimulate a Th1 cell-mediated immune response in mice, and conferred protection when challenged with B.abortis []. Therefore, these proteins may have an antigenic role as well as a secretory one in virulent bacteria []. A number of previously uncharacterised "hypothetical" proteins also show similarity to E.coli YajC, suggesting that this family is wider than first thought []. More recently, the precise interactions between the E.coli SecYEG complex, SecD, SecF, YajC and YidC have been studied []. Rather than acting individually, the four proteins form a heterotetrameric complex and associate with the SecYEG heterotrimeric complex []. The SecF and YajC subunits link the complex to the integral membrane translocase. ; PDB: 2RDD_B.
Probab=46.79 E-value=14 Score=25.23 Aligned_cols=7 Identities=0% Similarity=-0.107 Sum_probs=2.5
Q ss_pred HHhhhcc
Q 024632 247 IWLKVTE 253 (265)
Q Consensus 247 ~~~~~~~ 253 (265)
.++.++|
T Consensus 19 ~~rpqkk 25 (82)
T PF02699_consen 19 MIRPQKK 25 (82)
T ss_dssp THHHHHH
T ss_pred eecHHHH
Confidence 3333333
No 147
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=46.07 E-value=12 Score=26.60 Aligned_cols=13 Identities=8% Similarity=-0.220 Sum_probs=5.0
Q ss_pred HHHHHhhhccccc
Q 024632 244 GVCIWLKVTEHKM 256 (265)
Q Consensus 244 ~~~~~~~~~~~~~ 256 (265)
++..+|.+|||.+
T Consensus 23 yFli~RPQrKr~K 35 (97)
T COG1862 23 YFLIIRPQRKRMK 35 (97)
T ss_pred HHhhcCHHHHHHH
Confidence 3334444444333
No 148
>PF02529 PetG: Cytochrome B6-F complex subunit 5; InterPro: IPR003683 This family consists of cytochrome b6/f complex subunit 5 (PetG). The cytochrome bf complex, found in green plants, eukaryotic algae and cyanobacteria, connects photosystem I to photosystem II in the electron transport chain, functioning as a plastoquinol:plastocyanin/cytochrome c6 oxidoreductase []. The purified complex from the unicellular alga Chlamydomonas reinhardtii contains seven subunits; namely four high molecular weight subunits (cytochrome f, Rieske iron-sulphur protein, cytochrome b6, and subunit IV) and three approximately miniproteins (PetG, PetL, and PetX) []. Stoichiometry measurements are consistent with every subunit being present as two copies per b6/f dimer. The absence of PetG affects either the assembly or stability of the cytochrome bf complex in C. reinhardtii [].; GO: 0009512 cytochrome b6f complex; PDB: 1Q90_G 2ZT9_G 1VF5_G 2D2C_G 2E74_G 2E75_G 2E76_G.
Probab=45.87 E-value=56 Score=18.56 Aligned_cols=21 Identities=29% Similarity=0.248 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 024632 227 VGIGLGSGFASLVISFTGVCI 247 (265)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~ 247 (265)
.+|++|.+-+.++-.++..+.
T Consensus 7 ~GiVlGli~vtl~Glfv~Ay~ 27 (37)
T PF02529_consen 7 SGIVLGLIPVTLAGLFVAAYL 27 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhHHHHHHHHHHHHHH
Confidence 455555544443333333333
No 149
>cd01324 cbb3_Oxidase_CcoQ Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322
Probab=45.66 E-value=39 Score=20.50 Aligned_cols=12 Identities=33% Similarity=0.736 Sum_probs=4.6
Q ss_pred HHHHHHHHHhhh
Q 024632 240 ISFTGVCIWLKV 251 (265)
Q Consensus 240 ~~~~~~~~~~~~ 251 (265)
++++.+..|-.+
T Consensus 21 ~~Figiv~wa~~ 32 (48)
T cd01324 21 LFFLGVVVWAFR 32 (48)
T ss_pred HHHHHHHHHHhC
Confidence 333333333333
No 150
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=45.24 E-value=34 Score=23.40 Aligned_cols=12 Identities=25% Similarity=0.252 Sum_probs=5.3
Q ss_pred hhhHHHHHHHHH
Q 024632 224 LAIVGIGLGSGF 235 (265)
Q Consensus 224 ~~i~~~~~~~~~ 235 (265)
..+++.++..++
T Consensus 7 ~~iialiv~~ii 18 (81)
T PF00558_consen 7 LAIIALIVALII 18 (81)
T ss_dssp -HHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 445555544433
No 151
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=44.27 E-value=47 Score=22.35 Aligned_cols=11 Identities=0% Similarity=0.018 Sum_probs=4.6
Q ss_pred HHHHHHHHHhh
Q 024632 240 ISFTGVCIWLK 250 (265)
Q Consensus 240 ~~~~~~~~~~~ 250 (265)
++.++.+..++
T Consensus 17 Vap~wl~lHY~ 27 (75)
T TIGR02976 17 VAPLWLILHYR 27 (75)
T ss_pred HHHHHHHHHHH
Confidence 33444444433
No 152
>PF15345 TMEM51: Transmembrane protein 51
Probab=42.96 E-value=21 Score=29.51 Aligned_cols=8 Identities=63% Similarity=0.899 Sum_probs=3.4
Q ss_pred HHHHHHHH
Q 024632 231 LGSGFASL 238 (265)
Q Consensus 231 ~~~~~~~~ 238 (265)
+|++++++
T Consensus 65 VG~Gv~LL 72 (233)
T PF15345_consen 65 VGSGVALL 72 (233)
T ss_pred hhHHHHHH
Confidence 44444433
No 153
>PF15099 PIRT: Phosphoinositide-interacting protein family
Probab=42.01 E-value=12 Score=27.73 Aligned_cols=8 Identities=25% Similarity=0.493 Sum_probs=3.2
Q ss_pred chhhHHHH
Q 024632 223 VLAIVGIG 230 (265)
Q Consensus 223 ~~~i~~~~ 230 (265)
...+++.+
T Consensus 79 i~~~~G~v 86 (129)
T PF15099_consen 79 IISIFGPV 86 (129)
T ss_pred hhhhehHH
Confidence 33344443
No 154
>PF05510 Sarcoglycan_2: Sarcoglycan alpha/epsilon; InterPro: IPR008908 Sarcoglycans are a subcomplex of transmembrane proteins which are part of the dystrophin-glycoprotein complex. They are expressed in the skeletal, cardiac and smooth muscle. Although numerous studies have been conducted on the sarcoglycan subcomplex in skeletal and cardiac muscle, the manner of the distribution and localisation of these proteins along the nonjunctional sarcolemma is not clear []. This family contains alpha and epsilon members.; GO: 0016012 sarcoglycan complex
Probab=41.71 E-value=44 Score=30.01 Aligned_cols=7 Identities=29% Similarity=1.070 Sum_probs=4.1
Q ss_pred CCCCCCC
Q 024632 43 NLQNWTK 49 (265)
Q Consensus 43 ~~~~w~~ 49 (265)
.+..|-.
T Consensus 62 DLP~WLr 68 (386)
T PF05510_consen 62 DLPSWLR 68 (386)
T ss_pred CCcchhh
Confidence 4666754
No 155
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=41.61 E-value=59 Score=21.89 Aligned_cols=10 Identities=0% Similarity=-0.047 Sum_probs=3.9
Q ss_pred HHHHHHHHHh
Q 024632 240 ISFTGVCIWL 249 (265)
Q Consensus 240 ~~~~~~~~~~ 249 (265)
++.++++..+
T Consensus 17 Vap~WL~lHY 26 (75)
T PF06667_consen 17 VAPIWLILHY 26 (75)
T ss_pred HHHHHHHHHH
Confidence 3334444433
No 156
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=40.92 E-value=21 Score=39.91 Aligned_cols=32 Identities=28% Similarity=0.349 Sum_probs=25.2
Q ss_pred ECcCCCCCCCCCCCcccCcccceeccccccCC
Q 024632 101 DLSSNALTGSIPADLQYLVNLAVLNLSANRLA 132 (265)
Q Consensus 101 ~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 132 (265)
||++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 68899998433445778889999999999875
No 157
>PF14851 FAM176: FAM176 family
Probab=40.66 E-value=34 Score=26.50 Aligned_cols=6 Identities=0% Similarity=-0.036 Sum_probs=2.3
Q ss_pred HHHHHH
Q 024632 238 LVISFT 243 (265)
Q Consensus 238 ~~~~~~ 243 (265)
.+++++
T Consensus 37 tLcllV 42 (153)
T PF14851_consen 37 TLCLLV 42 (153)
T ss_pred HHHHHH
Confidence 334333
No 158
>PF03229 Alpha_GJ: Alphavirus glycoprotein J; InterPro: IPR004913 The exact function of the herpesvirus glycoprotein J is unknown, but it appears to play a role in the inhibition of apotosis of the host cell [].; GO: 0019050 suppression by virus of host apoptosis
Probab=39.65 E-value=52 Score=24.02 Aligned_cols=13 Identities=15% Similarity=0.041 Sum_probs=6.0
Q ss_pred hhHHHHHHHHHHH
Q 024632 225 AIVGIGLGSGFAS 237 (265)
Q Consensus 225 ~i~~~~~~~~~~~ 237 (265)
.++..++|+.+.+
T Consensus 84 ~aLp~VIGGLcaL 96 (126)
T PF03229_consen 84 FALPLVIGGLCAL 96 (126)
T ss_pred cchhhhhhHHHHH
Confidence 3445555544433
No 159
>PF06040 Adeno_E3: Adenovirus E3 protein; InterPro: IPR009266 This family consists of several Adenovirus E3 proteins. The E3 protein does not seem to be essential for virus replication in cultured cells suggesting that the protein may function in virus-host interactions [].
Probab=39.56 E-value=20 Score=26.03 Aligned_cols=11 Identities=18% Similarity=0.380 Sum_probs=6.2
Q ss_pred HHHHHHHhhhc
Q 024632 242 FTGVCIWLKVT 252 (265)
Q Consensus 242 ~~~~~~~~~~~ 252 (265)
+.+++||.|+.
T Consensus 114 l~v~~cW~k~w 124 (127)
T PF06040_consen 114 LVVLICWFKKW 124 (127)
T ss_pred hhhheeeeecc
Confidence 34556776654
No 160
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=38.70 E-value=49 Score=24.72 Aligned_cols=35 Identities=6% Similarity=-0.219 Sum_probs=20.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhhhcccccc
Q 024632 223 VLAIVGIGLGSGFASLVISFTGVCIWLKVTEHKMA 257 (265)
Q Consensus 223 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (265)
....+++.+.+++++.+++..+.....|..||+|-
T Consensus 97 ~t~Yia~~~il~il~~i~is~~~~~~yr~~r~~~~ 131 (139)
T PHA03099 97 TTSYIPSPGIVLVLVGIIITCCLLSVYRFTRRTKL 131 (139)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHhhheeeecccC
Confidence 44455554445555555555666776666777664
No 161
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=38.03 E-value=21 Score=29.56 Aligned_cols=14 Identities=21% Similarity=0.207 Sum_probs=5.8
Q ss_pred HHHHHHHHHhhhcc
Q 024632 240 ISFTGVCIWLKVTE 253 (265)
Q Consensus 240 ~~~~~~~~~~~~~~ 253 (265)
.++++++.+++|++
T Consensus 47 ~~~~~~~~~r~r~~ 60 (226)
T TIGR01433 47 ILMTLFFAWKYRAT 60 (226)
T ss_pred HHHHheeeEEEecc
Confidence 33334444444443
No 162
>CHL00008 petG cytochrome b6/f complex subunit V
Probab=37.30 E-value=80 Score=17.86 Aligned_cols=22 Identities=27% Similarity=0.175 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 024632 227 VGIGLGSGFASLVISFTGVCIW 248 (265)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~ 248 (265)
.+|++|.+-+.+.-.|+..+..
T Consensus 7 ~GiVLGlipvTl~GlfvaAylQ 28 (37)
T CHL00008 7 FGIVLGLIPITLAGLFVTAYLQ 28 (37)
T ss_pred hhHHHHhHHHHHHHHHHHHHHH
Confidence 4555555544433333333443
No 163
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=36.93 E-value=1.3 Score=40.99 Aligned_cols=112 Identities=30% Similarity=0.347 Sum_probs=75.1
Q ss_pred CCCeEEEEeeCCCcc--c--cCCccC----cCCCCCCEEECcCCCCCCCC----CCCcccCcc-cceeccccccCCCC--
Q 024632 70 NGRIYKLSLTNLSLQ--G--SISPYL----SNCTNLQSLDLSSNALTGSI----PADLQYLVN-LAVLNLSANRLAGE-- 134 (265)
Q Consensus 70 ~~~l~~L~L~~n~l~--~--~~p~~l----~~l~~L~~L~Ls~N~l~~~~----p~~l~~l~~-L~~L~Ls~N~l~~~-- 134 (265)
...++.+++..|.+. | .++..+ ....++++|.++++.++... ...+...++ +..+++.+|.+...
T Consensus 171 ~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~ 250 (478)
T KOG4308|consen 171 NEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGV 250 (478)
T ss_pred ccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHH
Confidence 567888889988874 1 122333 34678899999999876211 112334445 67799999988633
Q ss_pred --CchHhhhC-CcCCEEEccCccCcccC----ChhccCCCCCCEEEcccCCCCC
Q 024632 135 --IPPQLTLC-AYLNVIDLHDNLLTGQI----PQQLGLLVRLSAFDVSNNKLSG 181 (265)
Q Consensus 135 --~p~~~~~l-~~L~~L~Ls~N~l~~~~----p~~~~~l~~L~~L~l~~N~l~g 181 (265)
+...+..+ ..+++++++.|.|+..- ...+...+.++.+.+++|.+..
T Consensus 251 ~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 251 EKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 22334445 57789999999998543 3445667788999999998863
No 164
>PF02038 ATP1G1_PLM_MAT8: ATP1G1/PLM/MAT8 family; InterPro: IPR000272 The FXYD protein family contains at least seven members in mammals []. Two other family members that are not obvious orthologs of any identified mammalian FXYD protein exist in zebrafish. All these proteins share a signature sequence of six conserved amino acids comprising the FXYD motif in the NH2-terminus, and two glycines and one serine residue in the transmembrane domain. FXYD proteins are widely distributed in mammalian tissues with prominent expression in tissues that perform fluid and solute transport or that are electrically excitable. Initial functional characterisation suggested that FXYD proteins act as channels or as modulators of ion channels however studies have revealed that most FXYD proteins have another specific function and act as tissue-specific regulatory subunits of the Na,K-ATPase. Each of these auxiliary subunits produces a distinct functional effect on the transport characteristics of the Na,K-ATPase that is adjusted to the specific functional demands of the tissue in which the FXYD protein is expressed. FXYD proteins appear to preferentially associate with Na,K-ATPase alpha1-beta isozymes, and affect their function in a way that render them operationally complementary or supplementary to coexisting isozymes.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2JO1_A 2JP3_A 2ZXE_G 3A3Y_G 3N23_E 3B8E_H 3KDP_G 3N2F_E.
Probab=36.82 E-value=41 Score=20.63 Aligned_cols=6 Identities=33% Similarity=0.423 Sum_probs=2.3
Q ss_pred hHHHHH
Q 024632 226 IVGIGL 231 (265)
Q Consensus 226 i~~~~~ 231 (265)
+.+.++
T Consensus 16 igGLi~ 21 (50)
T PF02038_consen 16 IGGLIF 21 (50)
T ss_dssp HHHHHH
T ss_pred ccchHH
Confidence 334433
No 165
>PRK09458 pspB phage shock protein B; Provisional
Probab=34.76 E-value=73 Score=21.41 Aligned_cols=15 Identities=0% Similarity=0.022 Sum_probs=6.7
Q ss_pred HHHHHHHHHHhhhcc
Q 024632 239 VISFTGVCIWLKVTE 253 (265)
Q Consensus 239 ~~~~~~~~~~~~~~~ 253 (265)
+++-+++++.++.|+
T Consensus 16 fVaPiWL~LHY~sk~ 30 (75)
T PRK09458 16 FVAPIWLWLHYRSKR 30 (75)
T ss_pred HHHHHHHHHhhcccc
Confidence 344445555444333
No 166
>PRK00665 petG cytochrome b6-f complex subunit PetG; Reviewed
Probab=34.41 E-value=91 Score=17.64 Aligned_cols=21 Identities=29% Similarity=0.167 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 024632 227 VGIGLGSGFASLVISFTGVCI 247 (265)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~ 247 (265)
.+|++|.+-+.+.-.|+..+.
T Consensus 7 ~GiVLGlipiTl~GlfvaAyl 27 (37)
T PRK00665 7 CGIVLGLIPVTLAGLFVAAWN 27 (37)
T ss_pred hhHHHHhHHHHHHHHHHHHHH
Confidence 455555544443333333333
No 167
>PF10873 DUF2668: Protein of unknown function (DUF2668); InterPro: IPR022640 Members in this family of proteins are annotated as cysteine and tyrosine-rich protein 1, however currently no function is known [].
Probab=34.39 E-value=49 Score=25.20 Aligned_cols=27 Identities=15% Similarity=0.177 Sum_probs=15.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024632 225 AIVGIGLGSGFASLVISFTGVCIWLKV 251 (265)
Q Consensus 225 ~i~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (265)
.++++++..+++..+++.+..+....|
T Consensus 66 IVfgiVfimgvva~i~icvCmc~kn~r 92 (155)
T PF10873_consen 66 IVFGIVFIMGVVAGIAICVCMCMKNSR 92 (155)
T ss_pred eehhhHHHHHHHHHHHHHHhhhhhcCC
Confidence 355666666665555656666664443
No 168
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=34.25 E-value=52 Score=25.76 Aligned_cols=27 Identities=15% Similarity=0.059 Sum_probs=12.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 024632 225 AIVGIGLGSGFASLVISFTGVCIWLKVT 252 (265)
Q Consensus 225 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (265)
.++.+++.+.++ +.+++-++..++|.|
T Consensus 98 ~~Vl~g~s~l~i-~yfvir~~R~r~~~r 124 (163)
T PF06679_consen 98 LYVLVGLSALAI-LYFVIRTFRLRRRNR 124 (163)
T ss_pred HHHHHHHHHHHH-HHHHHHHHhhccccc
Confidence 344444444333 345556666655333
No 169
>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]
Probab=34.19 E-value=39 Score=32.29 Aligned_cols=23 Identities=22% Similarity=0.232 Sum_probs=9.5
Q ss_pred HHHHHHHHHhhcCCCCCChhHHH
Q 024632 6 LILFFLLTCAGLPLCSSDPNDEA 28 (265)
Q Consensus 6 l~l~l~l~~~~~~~~~~~~~~~~ 28 (265)
++++|++...+.+...-.+.++.
T Consensus 4 l~l~l~~~~~s~t~~~l~~~~C~ 26 (807)
T KOG1094|consen 4 LLLLLLASGDADTKGHLDPAKCR 26 (807)
T ss_pred hhhhhhhhcccccccccCHHHhh
Confidence 44444444433333334444443
No 170
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=33.90 E-value=81 Score=21.84 Aligned_cols=22 Identities=9% Similarity=0.003 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhcc
Q 024632 232 GSGFASLVISFTGVCIWLKVTE 253 (265)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~ 253 (265)
+..++++++-+++..-++|.||
T Consensus 42 ~iFil~VilwfvCC~kRkrsRr 63 (94)
T PF05393_consen 42 GIFILLVILWFVCCKKRKRSRR 63 (94)
T ss_pred HHHHHHHHHHHHHHHHhhhccC
Confidence 3334444555566666666655
No 171
>PF10954 DUF2755: Protein of unknown function (DUF2755); InterPro: IPR020513 This entry contains membrane proteins with no known function.; GO: 0016021 integral to membrane
Probab=33.88 E-value=80 Score=21.89 Aligned_cols=8 Identities=13% Similarity=0.335 Sum_probs=3.6
Q ss_pred HHHHHHhh
Q 024632 243 TGVCIWLK 250 (265)
Q Consensus 243 ~~~~~~~~ 250 (265)
..+.+|++
T Consensus 91 ~l~lrwr~ 98 (100)
T PF10954_consen 91 ALILRWRH 98 (100)
T ss_pred HHHHHHHh
Confidence 34445544
No 172
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=33.16 E-value=61 Score=21.71 Aligned_cols=23 Identities=9% Similarity=-0.000 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHhhhcccc
Q 024632 233 SGFASLVISFTGVCIWLKVTEHK 255 (265)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~ 255 (265)
+++.+++++.+++.....+||++
T Consensus 6 ~~~g~~~ll~~v~~~~~~~rr~~ 28 (75)
T PF14575_consen 6 IIVGVLLLLVLVIIVIVCFRRCK 28 (75)
T ss_dssp HHHHHHHHHHHHHHHHCCCTT--
T ss_pred HHHHHHHHHHhheeEEEEEeeEc
Confidence 33333333333444443444333
No 173
>PF12259 DUF3609: Protein of unknown function (DUF3609); InterPro: IPR022048 This domain family is found in eukaryotes and viruses, and is typically between 348 and 360 amino acids in length.
Probab=32.25 E-value=25 Score=31.42 Aligned_cols=14 Identities=14% Similarity=0.107 Sum_probs=5.9
Q ss_pred HHHHHHHHHhhhcc
Q 024632 240 ISFTGVCIWLKVTE 253 (265)
Q Consensus 240 ~~~~~~~~~~~~~~ 253 (265)
+.+++++++.|+|+
T Consensus 314 ~~~~~~~~~~~~~~ 327 (361)
T PF12259_consen 314 ISLAWLYRTFRRRQ 327 (361)
T ss_pred HHHHhheeehHHHH
Confidence 33444444444433
No 174
>PF05083 LST1: LST-1 protein; InterPro: IPR007775 B144/LST1 is a gene encoded in the human major histocompatibility complex that produces multiple forms of alternatively spliced mRNA and encodes peptides fewer than 100 amino acids in length. B144/LST1 is strongly expressed in dendritic cells. Transfection of B144/LST1 into a variety of cells induces morphologic changes including the production of long, thin filopodia []. A possible role in modulating immune responses. Induces morphological changes including production of filopodia and microspikes when overexpressed in a variety of cell types and may be involved in dendritic cell maturation. Isoform 1 and isoform 2 have an inhibitory effect on lymphocyte proliferation [, ]. ; GO: 0000902 cell morphogenesis, 0006955 immune response, 0016020 membrane
Probab=31.06 E-value=37 Score=22.34 Aligned_cols=6 Identities=17% Similarity=-0.041 Sum_probs=2.4
Q ss_pred HHhhhc
Q 024632 247 IWLKVT 252 (265)
Q Consensus 247 ~~~~~~ 252 (265)
||..||
T Consensus 17 C~lsrR 22 (74)
T PF05083_consen 17 CRLSRR 22 (74)
T ss_pred HHHHhh
Confidence 444333
No 175
>PRK13718 conjugal transfer protein TrbE; Provisional
Probab=30.41 E-value=1.1e+02 Score=20.71 Aligned_cols=11 Identities=9% Similarity=0.024 Sum_probs=4.4
Q ss_pred hhccccccccc
Q 024632 250 KVTEHKMALDQ 260 (265)
Q Consensus 250 ~~~~~~~~~~~ 260 (265)
.++..+++.+|
T Consensus 70 l~~~d~~ks~~ 80 (84)
T PRK13718 70 LQKHDERKSDE 80 (84)
T ss_pred HHhcccccchh
Confidence 33333444443
No 176
>PRK10525 cytochrome o ubiquinol oxidase subunit II; Provisional
Probab=30.37 E-value=29 Score=30.29 Aligned_cols=24 Identities=17% Similarity=0.022 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcc
Q 024632 230 GLGSGFASLVISFTGVCIWLKVTE 253 (265)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~ 253 (265)
++.+++++.++++++++.|++|++
T Consensus 49 ~~~liv~i~V~~l~~~f~~ryR~~ 72 (315)
T PRK10525 49 GLMLIVVIPAILMAVGFAWKYRAS 72 (315)
T ss_pred HHHHhhHHHHHHHHheeEEEEecC
Confidence 333334333444455556655544
No 177
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=29.81 E-value=84 Score=26.44 Aligned_cols=15 Identities=20% Similarity=0.222 Sum_probs=6.6
Q ss_pred HHHHHHHHHHhhhcc
Q 024632 239 VISFTGVCIWLKVTE 253 (265)
Q Consensus 239 ~~~~~~~~~~~~~~~ 253 (265)
+.++.+++.|+.|++
T Consensus 48 V~~~~~~~~~k~R~~ 62 (247)
T COG1622 48 VIVLLVYFAWKYRAS 62 (247)
T ss_pred HHHHHHHHHhhhhhc
Confidence 333444445444433
No 178
>PF11431 Transport_MerF: Membrane transport protein MerF; InterPro: IPR021091 This entry represents Mercury ion transport protein MerF, which has a core helix-loop-helix domain. It also has two vicinal pairs of cysteine residues which are involved in the transport of Hg(II) across the membrane and are exposed to the cytoplasm []. ; PDB: 1WAZ_A 2LJ2_A 2H3O_A.
Probab=29.07 E-value=54 Score=19.68 Aligned_cols=9 Identities=11% Similarity=0.379 Sum_probs=3.7
Q ss_pred HHHHHhhhc
Q 024632 244 GVCIWLKVT 252 (265)
Q Consensus 244 ~~~~~~~~~ 252 (265)
+.-.|+|+|
T Consensus 36 ~yal~r~~~ 44 (46)
T PF11431_consen 36 IYALWRRRR 44 (46)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 334444433
No 179
>TIGR03521 GldG gliding-associated putative ABC transporter substrate-binding component GldG. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldG is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldG abolish the gliding phenotype. GldG, along with GldA and GldF are believed to compose an ABC transporter and are observed as an operon. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=29.06 E-value=56 Score=30.97 Aligned_cols=12 Identities=8% Similarity=0.080 Sum_probs=5.8
Q ss_pred hhHHHHHHHHHH
Q 024632 24 PNDEACLTHLSQ 35 (265)
Q Consensus 24 ~~~~~~l~~~~~ 35 (265)
+.+..+|.+|-.
T Consensus 249 ~~e~~~Ldqfl~ 260 (552)
T TIGR03521 249 EREKYILDQYIM 260 (552)
T ss_pred HHHHHHHHHHHH
Confidence 344455555543
No 180
>PF11980 DUF3481: Domain of unknown function (DUF3481); InterPro: IPR022579 This domain of unknown function is located in the C terminus of the eukaryotic neuropilin receptor family of proteins. It is found in association with PF00754 from PFAM, PF00431 from PFAM and PF00629 from PFAM. There are two completely conserved residues (Y and E) that may be functionally important.
Probab=29.03 E-value=79 Score=21.68 Aligned_cols=10 Identities=0% Similarity=-0.549 Sum_probs=4.1
Q ss_pred HHHHHHHhhh
Q 024632 242 FTGVCIWLKV 251 (265)
Q Consensus 242 ~~~~~~~~~~ 251 (265)
.++++|.|.+
T Consensus 35 ~vvL~C~r~~ 44 (87)
T PF11980_consen 35 GVVLYCHRFH 44 (87)
T ss_pred HHHHhhhhhc
Confidence 3344444433
No 181
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=28.95 E-value=8.6 Score=29.58 Aligned_cols=35 Identities=26% Similarity=0.265 Sum_probs=22.7
Q ss_pred CCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 024632 217 KSKGLSVLAIVGIGLGSGFASLVISFTGVCIWLKVT 252 (265)
Q Consensus 217 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (265)
+.+..-.+.++++++.+++++ +++++++|+++||.
T Consensus 46 knknIVIGvVVGVGg~ill~i-l~lvf~~c~r~kkt 80 (154)
T PF04478_consen 46 KNKNIVIGVVVGVGGPILLGI-LALVFIFCIRRKKT 80 (154)
T ss_pred CCccEEEEEEecccHHHHHHH-HHhheeEEEecccC
Confidence 344577888888877666554 44456666666664
No 182
>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]
Probab=28.54 E-value=3.3e+02 Score=25.47 Aligned_cols=30 Identities=10% Similarity=-0.151 Sum_probs=11.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 024632 224 LAIVGIGLGSGFASLVISFTGVCIWLKVTE 253 (265)
Q Consensus 224 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (265)
..++.+..+++.+++++++.+++.+++|+.
T Consensus 154 ~~~al~~~~~v~~l~~lvi~~~~~~r~~k~ 183 (534)
T KOG3653|consen 154 LIYALIPLLLVSLLAALVILAFLGYRQRKN 183 (534)
T ss_pred ehhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 333334333333333343444444444433
No 183
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=28.31 E-value=38 Score=17.15 Aligned_cols=10 Identities=30% Similarity=0.448 Sum_probs=4.4
Q ss_pred CCCEEEcccC
Q 024632 168 RLSAFDVSNN 177 (265)
Q Consensus 168 ~L~~L~l~~N 177 (265)
+|+.|+++++
T Consensus 3 ~L~~L~l~~C 12 (26)
T smart00367 3 NLRELDLSGC 12 (26)
T ss_pred CCCEeCCCCC
Confidence 3444444443
No 184
>PF11857 DUF3377: Domain of unknown function (DUF3377); InterPro: IPR021805 This domain is functionally uncharacterised and found at the C terminus of peptidases belonging to MEROPS peptidase family M10A, membrane-type matrix metallopeptidases (clan MA). ; GO: 0004222 metalloendopeptidase activity
Probab=28.29 E-value=32 Score=23.00 Aligned_cols=13 Identities=8% Similarity=-0.143 Sum_probs=5.2
Q ss_pred HHHHHHhhhcccc
Q 024632 243 TGVCIWLKVTEHK 255 (265)
Q Consensus 243 ~~~~~~~~~~~~~ 255 (265)
++.++.+||+..+
T Consensus 48 ~yai~~fkrkGtP 60 (74)
T PF11857_consen 48 IYAIFQFKRKGTP 60 (74)
T ss_pred HHHhheeeecCCC
Confidence 3333334444433
No 185
>PHA03291 envelope glycoprotein I; Provisional
Probab=27.88 E-value=35 Score=30.03 Aligned_cols=16 Identities=25% Similarity=0.436 Sum_probs=7.4
Q ss_pred CcchhhHHHHHHHHHH
Q 024632 221 LSVLAIVGIGLGSGFA 236 (265)
Q Consensus 221 ~~~~~i~~~~~~~~~~ 236 (265)
+....|+-|.+-+.++
T Consensus 283 Lt~~qiiQiAIPasii 298 (401)
T PHA03291 283 LTVTQIIQIAIPASII 298 (401)
T ss_pred hhhhhhheeccchHHH
Confidence 3444555554444333
No 186
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=27.80 E-value=28 Score=30.23 Aligned_cols=18 Identities=22% Similarity=0.049 Sum_probs=10.6
Q ss_pred CcchhhHHHHHHHHHHHH
Q 024632 221 LSVLAIVGIGLGSGFASL 238 (265)
Q Consensus 221 ~~~~~i~~~~~~~~~~~~ 238 (265)
.-+-.++|+++++.++++
T Consensus 271 ~~vPIaVG~~La~lvliv 288 (306)
T PF01299_consen 271 DLVPIAVGAALAGLVLIV 288 (306)
T ss_pred chHHHHHHHHHHHHHHHH
Confidence 334455777776666543
No 187
>PF09835 DUF2062: Uncharacterized protein conserved in bacteria (DUF2062); InterPro: IPR018639 This domain, found in various prokaryotic proteins, has no known function. It is found at the C-terminal of family 2 glycosyltransferase proteins, in addition to proteins of unknown function.
Probab=27.20 E-value=85 Score=23.96 Aligned_cols=13 Identities=15% Similarity=0.041 Sum_probs=5.7
Q ss_pred HHHHHHHhhhccc
Q 024632 242 FTGVCIWLKVTEH 254 (265)
Q Consensus 242 ~~~~~~~~~~~~~ 254 (265)
...+..+++||+|
T Consensus 140 ~~~~~~~r~~r~~ 152 (154)
T PF09835_consen 140 YFLVRKYRKRRRK 152 (154)
T ss_pred HHHHHHHHHHHHh
Confidence 3345544444433
No 188
>KOG3637 consensus Vitronectin receptor, alpha subunit [Extracellular structures]
Probab=25.99 E-value=64 Score=33.15 Aligned_cols=16 Identities=19% Similarity=0.158 Sum_probs=7.9
Q ss_pred CcchhhHHHHHHHHHH
Q 024632 221 LSVLAIVGIGLGSGFA 236 (265)
Q Consensus 221 ~~~~~i~~~~~~~~~~ 236 (265)
+..+.|++.++++.++
T Consensus 976 vp~wiIi~svl~GLLl 991 (1030)
T KOG3637|consen 976 VPLWIIILSVLGGLLL 991 (1030)
T ss_pred cceeeehHHHHHHHHH
Confidence 4555555555444443
No 189
>PF10389 CoatB: Bacteriophage coat protein B ; InterPro: IPR008020 The major coat protein in the capsid of filamentous bacteriophage forms a helical assembly of about 7000 identical protomers, with each protomer comprised of 46 amino acids, after the cleavage of the signal peptide. Each protomer forms a slightly curved helix that combines to form a tubular structure that encapsulates the viral DNA [].; PDB: 2IFO_A.
Probab=25.96 E-value=1.6e+02 Score=17.79 Aligned_cols=13 Identities=31% Similarity=0.503 Sum_probs=6.0
Q ss_pred HHHHHHHHHHhhh
Q 024632 239 VISFTGVCIWLKV 251 (265)
Q Consensus 239 ~~~~~~~~~~~~~ 251 (265)
+++.+..+-|.||
T Consensus 32 v~V~i~v~kwiRr 44 (46)
T PF10389_consen 32 VIVGIAVYKWIRR 44 (46)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 3334444555553
No 190
>PF01708 Gemini_mov: Geminivirus putative movement protein ; InterPro: IPR002621 This family consists of putative movement proteins from Maize streak virus and Wheat dwarf virus [].; GO: 0046740 spread of virus in host, cell to cell, 0016021 integral to membrane
Probab=25.71 E-value=88 Score=21.77 Aligned_cols=6 Identities=17% Similarity=0.429 Sum_probs=2.3
Q ss_pred hhcccc
Q 024632 250 KVTEHK 255 (265)
Q Consensus 250 ~~~~~~ 255 (265)
|.||.|
T Consensus 67 KAkrqr 72 (91)
T PF01708_consen 67 KAKRQR 72 (91)
T ss_pred eeccCC
Confidence 334433
No 191
>KOG4482 consensus Sarcoglycan complex, alpha/epsilon subunits [Function unknown]
Probab=25.49 E-value=1e+02 Score=27.60 Aligned_cols=7 Identities=43% Similarity=1.208 Sum_probs=3.7
Q ss_pred CCCCCCC
Q 024632 43 NLQNWTK 49 (265)
Q Consensus 43 ~~~~w~~ 49 (265)
.+.+|-.
T Consensus 68 dlP~WLR 74 (449)
T KOG4482|consen 68 DLPNWLR 74 (449)
T ss_pred CchhHHH
Confidence 3556643
No 192
>PF12301 CD99L2: CD99 antigen like protein 2; InterPro: IPR022078 This family of proteins is found in eukaryotes. Proteins in this family are typically between 165 and 237 amino acids in length. CD99L2 and CD99 are involved in trans-endothelial migration of neutrophils in vitro and in the recruitment of neutrophils into inflamed peritoneum.
Probab=25.22 E-value=1e+02 Score=24.28 Aligned_cols=8 Identities=38% Similarity=0.322 Sum_probs=3.7
Q ss_pred chhhHHHH
Q 024632 223 VLAIVGIG 230 (265)
Q Consensus 223 ~~~i~~~~ 230 (265)
...|.+|+
T Consensus 114 ~g~IaGIv 121 (169)
T PF12301_consen 114 AGTIAGIV 121 (169)
T ss_pred cchhhhHH
Confidence 34444544
No 193
>PF02404 SCF: Stem cell factor; InterPro: IPR003452 Stem cell factor (SCF) is a homodimer involved in hematopoiesis. SCF binds to and activates the SCF receptor (SCFR), a receptor tyrosine kinase. SCF stimulates the proliferation of mast cells and is able to augment the proliferation of both myeloid and lymphoid hematopoietic progenitors in bone marrow culture. It also mediates cell-cell adhesion and acts synergistically with other cytokines. SCF is a type I membrane protein, but is also found in a secretable, soluble form. The crystal structure of human SCF has been resolved and a potential receptor-binding site identified [].; GO: 0005173 stem cell factor receptor binding, 0007155 cell adhesion, 0016020 membrane; PDB: 1EXZ_A 1SCF_D 2E9W_C 2O26_A 2O27_A.
Probab=24.67 E-value=25 Score=29.59 Aligned_cols=13 Identities=15% Similarity=0.330 Sum_probs=9.0
Q ss_pred hHHHHHHHHHHhC
Q 024632 25 NDEACLTHLSQSL 37 (265)
Q Consensus 25 ~~~~~l~~~~~~l 37 (265)
+|+..+..++..+
T Consensus 35 Ddv~~i~~L~~Ni 47 (273)
T PF02404_consen 35 DDVKDISKLVANI 47 (273)
T ss_dssp CCHHHHHHHHHTS
T ss_pred hhhHHHHHHHcCC
Confidence 5666677777766
No 194
>PHA03265 envelope glycoprotein D; Provisional
Probab=24.43 E-value=73 Score=28.14 Aligned_cols=39 Identities=15% Similarity=0.072 Sum_probs=28.7
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhcccccc
Q 024632 219 KGLSVLAIVGIGLGSGFASLVISFTGVCIWLKVTEHKMA 257 (265)
Q Consensus 219 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (265)
.+-.++.+++.++++.+++.++.++++..++-.+|+.+.
T Consensus 346 ~~~~~g~~ig~~i~glv~vg~il~~~~rr~k~~~k~~~~ 384 (402)
T PHA03265 346 NSTFVGISVGLGIAGLVLVGVILYVCLRRKKELKKSAQN 384 (402)
T ss_pred CCcccceEEccchhhhhhhhHHHHHHhhhhhhhhhhhhc
Confidence 334577777877777777778889999998877665543
No 195
>PF14654 Epiglycanin_C: Mucin, catalytic, TM and cytoplasmic tail region
Probab=24.38 E-value=1.8e+02 Score=20.61 Aligned_cols=17 Identities=29% Similarity=0.163 Sum_probs=11.6
Q ss_pred CCcchhhHHHHHHHHHH
Q 024632 220 GLSVLAIVGIGLGSGFA 236 (265)
Q Consensus 220 ~~~~~~i~~~~~~~~~~ 236 (265)
.+.-+.|+.|.++.+++
T Consensus 14 sL~PWeIfLItLasVvv 30 (106)
T PF14654_consen 14 SLKPWEIFLITLASVVV 30 (106)
T ss_pred CccchHHHHHHHHHHHH
Confidence 45678888887765544
No 196
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=24.28 E-value=1.9e+02 Score=20.94 Aligned_cols=21 Identities=14% Similarity=-0.015 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHhhhcccccc
Q 024632 237 SLVISFTGVCIWLKVTEHKMA 257 (265)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~ 257 (265)
.+++-++.+...+|++|....
T Consensus 14 ~l~asl~~wr~~~rq~k~~~~ 34 (107)
T PF15330_consen 14 SLAASLLAWRMKQRQKKAGQY 34 (107)
T ss_pred HHHHHHHHHHHHhhhccccCC
Confidence 334445565555666554433
No 197
>PF02060 ISK_Channel: Slow voltage-gated potassium channel; InterPro: IPR000369 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Two types of beta subunit (KCNE and KCNAB) are presently known to associate with voltage-gated alpha subunits (Kv, KCNQ and eag-like). However, not all combinations of alpha and beta subunits are possible. The KCNE family of K+ channel subunits are membrane glycoproteins that possess a single transmembrane (TM) domain. They share no structural relationship with the alpha subunit proteins, which possess pore forming domains. The subunits appear to have a regulatory function, modulating the kinetics and voltage dependence of the alpha subunits of voltage-dependent K+ channels. KCNE subunits are formed from short polypeptides of ~130 amino acids, and are divided into five subfamilies: KCNE1 (MinK/IsK), KCNE2 (MiRP1), KCNE3 (MiRP2), KCNE4 (MiRP3) and KCNE1L (AMMECR2). ; GO: 0005249 voltage-gated potassium channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2K21_A.
Probab=24.27 E-value=1.2e+02 Score=22.52 Aligned_cols=17 Identities=12% Similarity=0.032 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHhhhcc
Q 024632 237 SLVISFTGVCIWLKVTE 253 (265)
Q Consensus 237 ~~~~~~~~~~~~~~~~~ 253 (265)
++++++++-..+.||+.
T Consensus 56 ff~~gImlsyvRSKK~E 72 (129)
T PF02060_consen 56 FFTVGIMLSYVRSKKRE 72 (129)
T ss_dssp HHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhhhc
Confidence 33444444455444433
No 198
>PTZ00087 thrombosponding-related protein; Provisional
Probab=23.90 E-value=83 Score=26.73 Aligned_cols=20 Identities=25% Similarity=0.064 Sum_probs=9.3
Q ss_pred CcchhhHHHHHHHHHHHHHH
Q 024632 221 LSVLAIVGIGLGSGFASLVI 240 (265)
Q Consensus 221 ~~~~~i~~~~~~~~~~~~~~ 240 (265)
.+...|..+.+-+++++.++
T Consensus 293 sst~~i~~i~~piv~vi~v~ 312 (340)
T PTZ00087 293 SSTFKILIILLPIVLIICVM 312 (340)
T ss_pred CCcceEeeeehhHHHHHHHH
Confidence 44555555555444443333
No 199
>KOG1219 consensus Uncharacterized conserved protein, contains laminin, cadherin and EGF domains [Signal transduction mechanisms]
Probab=23.60 E-value=68 Score=35.97 Aligned_cols=18 Identities=11% Similarity=-0.235 Sum_probs=9.2
Q ss_pred HHHHHHhhhccccccccc
Q 024632 243 TGVCIWLKVTEHKMALDQ 260 (265)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~ 260 (265)
+++.|+++.+|+++.+.+
T Consensus 4011 lf~~crKk~~rkky~~~~ 4028 (4289)
T KOG1219|consen 4011 LFWKCRKKNSRKKYGAHC 4028 (4289)
T ss_pred HHHhhhhhccCCcccccC
Confidence 444555555555555443
No 200
>PF03988 DUF347: Repeat of Unknown Function (DUF347) ; InterPro: IPR007136 This repeat is found as four tandem repeats in a family of bacterial membrane proteins. Each repeat contains two transmembrane regions and a conserved tryptophan.
Probab=23.07 E-value=1.5e+02 Score=18.42 Aligned_cols=6 Identities=17% Similarity=1.066 Sum_probs=2.2
Q ss_pred HHHhhh
Q 024632 246 CIWLKV 251 (265)
Q Consensus 246 ~~~~~~ 251 (265)
..|++.
T Consensus 45 ~~~~~~ 50 (55)
T PF03988_consen 45 ALWYRS 50 (55)
T ss_pred HHHHHH
Confidence 333333
No 201
>KOG2952 consensus Cell cycle control protein [Cell cycle control, cell division, chromosome partitioning; Transcription; Signal transduction mechanisms]
Probab=22.82 E-value=1.2e+02 Score=26.80 Aligned_cols=28 Identities=21% Similarity=0.205 Sum_probs=16.8
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHH
Q 024632 221 LSVLAIVGIGLGSGFASLVISFTGVCIW 248 (265)
Q Consensus 221 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 248 (265)
...+.|+.+++|++++++.+++.+++..
T Consensus 308 N~FLgI~YLvVG~ic~~l~~~f~~~~l~ 335 (351)
T KOG2952|consen 308 NPFLGIAYLVVGSICILLGLIFLVIYLF 335 (351)
T ss_pred CccceehHHHHHHHHHHHHHHHHHHHhh
Confidence 3456677777777666555555544443
No 202
>PF14979 TMEM52: Transmembrane 52
Probab=22.60 E-value=2e+02 Score=22.07 Aligned_cols=31 Identities=13% Similarity=0.007 Sum_probs=15.0
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 024632 221 LSVLAIVGIGLGSGFASLVISFTGVCIWLKVT 252 (265)
Q Consensus 221 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (265)
-.++.++.+++...+.. +.+..+-+|+.||+
T Consensus 20 WyIwLill~~~llLLCG-~ta~C~rfCClrk~ 50 (154)
T PF14979_consen 20 WYIWLILLIGFLLLLCG-LTASCVRFCCLRKQ 50 (154)
T ss_pred hHHHHHHHHHHHHHHHH-HHHHHHHHHHhccc
Confidence 34555555554444433 44455554444443
No 203
>KOG3251 consensus Golgi SNAP receptor complex member [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.42 E-value=1e+02 Score=25.22 Aligned_cols=12 Identities=17% Similarity=0.349 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHh
Q 024632 238 LVISFTGVCIWL 249 (265)
Q Consensus 238 ~~~~~~~~~~~~ 249 (265)
++++++.++.|.
T Consensus 201 ~~v~~yl~~~wl 212 (213)
T KOG3251|consen 201 TLVIMYLFYRWL 212 (213)
T ss_pred HHHHHHHHHHHh
Confidence 344444555553
No 204
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=22.02 E-value=86 Score=22.09 Aligned_cols=12 Identities=17% Similarity=0.396 Sum_probs=5.3
Q ss_pred HHHHHHHHHhhh
Q 024632 240 ISFTGVCIWLKV 251 (265)
Q Consensus 240 ~~~~~~~~~~~~ 251 (265)
+.++....|.++
T Consensus 30 LLIi~~~IW~~~ 41 (121)
T PF10669_consen 30 LLIITKSIWHDS 41 (121)
T ss_pred HHHHHHHHhhhH
Confidence 333444555443
No 205
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=21.15 E-value=1.1e+02 Score=27.87 Aligned_cols=35 Identities=17% Similarity=0.188 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Q 024632 224 LAIVGIGLGSGFASLVISFTGVCIWLKVTEHKMAL 258 (265)
Q Consensus 224 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (265)
..+.+++++..++++++..++.||+||+++++.+.
T Consensus 23 a~v~~~~l~l~Ll~ll~yl~~~CC~r~~~~~~~~~ 57 (406)
T PF04906_consen 23 ASVAAACLALSLLFLLIYLICRCCCRRPREEKSSR 57 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccccc
No 206
>PF14914 LRRC37AB_C: LRRC37A/B like protein 1 C-terminal domain
Probab=20.57 E-value=1.7e+02 Score=22.52 Aligned_cols=7 Identities=0% Similarity=-0.121 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 024632 242 FTGVCIW 248 (265)
Q Consensus 242 ~~~~~~~ 248 (265)
+++++|.
T Consensus 134 liii~CL 140 (154)
T PF14914_consen 134 LIIIFCL 140 (154)
T ss_pred HHHHHHH
Confidence 3333333
No 207
>KOG4550 consensus Predicted membrane protein [Function unknown]
Probab=20.07 E-value=73 Score=29.04 Aligned_cols=14 Identities=14% Similarity=0.610 Sum_probs=6.3
Q ss_pred HHHHHHHHHHhhhc
Q 024632 239 VISFTGVCIWLKVT 252 (265)
Q Consensus 239 ~~~~~~~~~~~~~~ 252 (265)
+++++.+..|+.+|
T Consensus 575 il~ii~~Lh~~EKk 588 (606)
T KOG4550|consen 575 ILAIIGILHWQEKK 588 (606)
T ss_pred HHHHHhheehhhhh
Confidence 34444445554443
Done!