Query 024632
Match_columns 265
No_of_seqs 341 out of 4402
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 11:42:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024632.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024632hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ogq_A PGIP-2, polygalacturona 99.9 9.6E-26 3.3E-30 194.9 13.7 176 21-206 2-185 (313)
2 3rgz_A Protein brassinosteroid 99.9 4.9E-23 1.7E-27 197.8 9.8 119 96-219 633-751 (768)
3 4ecn_A Leucine-rich repeat pro 99.9 1.7E-22 5.8E-27 195.4 7.8 179 20-208 264-561 (876)
4 3rgz_A Protein brassinosteroid 99.9 4.4E-22 1.5E-26 191.2 9.5 161 17-186 4-170 (768)
5 4eco_A Uncharacterized protein 99.9 3.2E-22 1.1E-26 188.4 8.0 178 23-208 28-318 (636)
6 3m19_A Variable lymphocyte rec 99.8 2.6E-20 8.7E-25 155.7 14.4 150 57-210 45-194 (251)
7 2v9t_B SLIT homolog 2 protein 99.8 8.6E-21 2.9E-25 155.7 11.2 138 71-212 32-169 (220)
8 1ogq_A PGIP-2, polygalacturona 99.8 8.2E-22 2.8E-26 170.1 5.2 152 59-216 137-312 (313)
9 3e6j_A Variable lymphocyte rec 99.8 3.3E-20 1.1E-24 153.1 13.7 137 71-212 40-176 (229)
10 2v70_A SLIT-2, SLIT homolog 2 99.8 2E-20 6.9E-25 153.5 10.9 138 71-212 32-170 (220)
11 4fcg_A Uncharacterized protein 99.8 3.3E-21 1.1E-25 167.5 6.3 160 19-188 21-203 (328)
12 2o6q_A Variable lymphocyte rec 99.8 2E-19 7E-24 151.8 14.8 141 67-211 81-221 (270)
13 3rfs_A Internalin B, repeat mo 99.8 1.8E-19 6.1E-24 152.3 13.8 143 66-212 80-222 (272)
14 2o6s_A Variable lymphocyte rec 99.8 4.6E-19 1.6E-23 143.7 14.0 139 70-212 27-165 (208)
15 1ozn_A Reticulon 4 receptor; N 99.8 2E-19 6.9E-24 152.8 11.0 141 67-211 101-241 (285)
16 1w8a_A SLIT protein; signaling 99.8 2E-19 6.8E-24 144.5 10.3 131 74-211 11-142 (192)
17 1p9a_G Platelet glycoprotein I 99.8 9.7E-19 3.3E-23 149.4 13.7 138 69-212 75-212 (290)
18 4fcg_A Uncharacterized protein 99.8 4.9E-19 1.7E-23 153.8 11.7 138 62-206 118-264 (328)
19 2wfh_A SLIT homolog 2 protein 99.8 7.8E-19 2.7E-23 141.2 10.9 131 74-212 13-143 (193)
20 3v47_A TOLL-like receptor 5B a 99.8 1.6E-18 5.3E-23 156.3 11.9 139 70-212 274-412 (455)
21 3m19_A Variable lymphocyte rec 99.8 9.2E-18 3.1E-22 140.1 15.0 134 71-208 35-168 (251)
22 2z66_A Variable lymphocyte rec 99.8 6.2E-19 2.1E-23 151.2 8.0 139 69-211 124-264 (306)
23 2xot_A Amphoterin-induced prot 99.8 7.6E-19 2.6E-23 154.4 8.7 150 57-211 49-205 (361)
24 3vq2_A TLR4, TOLL-like recepto 99.8 9.7E-19 3.3E-23 163.2 8.3 144 65-213 418-563 (606)
25 2o6q_A Variable lymphocyte rec 99.8 2.9E-17 1E-21 138.5 16.4 148 57-208 47-194 (270)
26 1ozn_A Reticulon 4 receptor; N 99.7 8E-18 2.7E-22 142.9 12.5 136 67-206 76-212 (285)
27 4eco_A Uncharacterized protein 99.7 7E-19 2.4E-23 165.6 6.0 132 55-189 191-351 (636)
28 2je0_A Acidic leucine-rich nuc 99.7 7.4E-18 2.5E-22 129.4 10.3 127 71-203 17-148 (149)
29 2ell_A Acidic leucine-rich nuc 99.7 9.6E-18 3.3E-22 131.4 10.7 132 70-207 23-159 (168)
30 4g8a_A TOLL-like receptor 4; l 99.7 3.3E-18 1.1E-22 159.6 9.4 144 65-212 439-584 (635)
31 1w8a_A SLIT protein; signaling 99.7 2.1E-17 7.3E-22 132.5 12.6 114 72-185 30-144 (192)
32 3zyj_A Leucine-rich repeat-con 99.7 8.4E-18 2.9E-22 151.4 10.8 151 57-213 122-297 (440)
33 2o6r_A Variable lymphocyte rec 99.7 2.4E-17 8.2E-22 130.3 11.9 129 75-210 11-139 (177)
34 2v70_A SLIT-2, SLIT homolog 2 99.7 1.2E-17 4.1E-22 136.9 10.4 120 65-184 51-170 (220)
35 2z62_A TOLL-like receptor 4, v 99.7 1.1E-17 3.7E-22 141.4 10.3 150 59-212 64-241 (276)
36 3zyi_A Leucine-rich repeat-con 99.7 1.4E-17 4.8E-22 150.4 11.4 151 57-213 133-308 (452)
37 3rfs_A Internalin B, repeat mo 99.7 7.1E-17 2.4E-21 136.3 14.8 136 67-208 59-194 (272)
38 1p9a_G Platelet glycoprotein I 99.7 2.5E-17 8.4E-22 140.6 11.7 145 57-208 41-185 (290)
39 4g8a_A TOLL-like receptor 4; l 99.7 1.9E-17 6.6E-22 154.4 11.6 133 71-207 52-185 (635)
40 2v9t_B SLIT homolog 2 protein 99.7 3.1E-17 1.1E-21 134.4 11.2 126 57-182 42-167 (220)
41 3t6q_A CD180 antigen; protein- 99.7 9.3E-18 3.2E-22 156.5 8.6 143 64-211 393-563 (606)
42 2z63_A TOLL-like receptor 4, v 99.7 1.7E-17 5.9E-22 153.4 9.1 143 67-213 392-536 (570)
43 1ziw_A TOLL-like receptor 3; i 99.7 4.3E-17 1.5E-21 154.1 11.9 147 63-213 472-627 (680)
44 3a79_B TLR6, VLRB.59, TOLL-lik 99.7 2.3E-17 7.9E-22 152.9 9.8 148 57-212 363-514 (562)
45 2o6s_A Variable lymphocyte rec 99.7 1.3E-16 4.5E-21 129.2 13.1 128 57-184 38-165 (208)
46 3e6j_A Variable lymphocyte rec 99.7 1.2E-16 4E-21 131.7 12.9 127 57-184 50-176 (229)
47 2z62_A TOLL-like receptor 4, v 99.7 2.8E-17 9.7E-22 138.8 9.0 132 58-189 39-171 (276)
48 2z7x_B TOLL-like receptor 1, v 99.7 1.8E-17 6E-22 152.0 8.3 145 59-211 336-484 (520)
49 4ecn_A Leucine-rich repeat pro 99.7 1.5E-17 5.1E-22 160.9 7.8 144 55-206 433-606 (876)
50 2xot_A Amphoterin-induced prot 99.7 7.4E-17 2.5E-21 141.7 10.9 136 71-207 39-175 (361)
51 3vq2_A TLR4, TOLL-like recepto 99.7 1.2E-16 4.1E-21 149.0 12.4 150 57-207 42-193 (606)
52 2z66_A Variable lymphocyte rec 99.7 6.3E-17 2.1E-21 138.6 9.3 141 65-209 95-237 (306)
53 2id5_A Lingo-1, leucine rich r 99.7 8.1E-17 2.8E-21 146.2 10.1 145 57-205 42-186 (477)
54 4ezg_A Putative uncharacterize 99.7 1.6E-16 5.3E-21 127.9 9.6 130 67-206 62-192 (197)
55 2o6r_A Variable lymphocyte rec 99.7 3.1E-16 1.1E-20 123.8 11.0 114 71-184 28-141 (177)
56 2z81_A CD282 antigen, TOLL-lik 99.7 1.3E-16 4.5E-21 147.0 9.8 133 71-207 26-160 (549)
57 2wfh_A SLIT homolog 2 protein 99.7 3.1E-16 1.1E-20 125.9 10.7 111 71-182 31-141 (193)
58 2id5_A Lingo-1, leucine rich r 99.7 6E-17 2E-21 147.0 7.1 142 66-212 171-337 (477)
59 3v47_A TOLL-like receptor 5B a 99.7 1.5E-16 5.1E-21 143.3 9.5 132 71-206 30-165 (455)
60 1a9n_A U2A', U2A'; complex (nu 99.7 3.3E-16 1.1E-20 123.7 10.2 130 67-206 15-151 (176)
61 3t6q_A CD180 antigen; protein- 99.7 2.2E-16 7.4E-21 147.3 10.0 148 56-207 42-191 (606)
62 3oja_B Anopheles plasmodium-re 99.7 2.7E-16 9.3E-21 146.9 10.4 112 70-181 74-185 (597)
63 1wwl_A Monocyte differentiatio 99.6 8.9E-17 3E-21 138.3 5.9 115 68-183 118-244 (312)
64 3g39_A Variable lymphocyte rec 99.6 1.1E-15 3.8E-20 120.1 11.3 108 74-184 12-119 (170)
65 3zyi_A Leucine-rich repeat-con 99.6 1.1E-15 3.6E-20 138.1 12.6 75 59-133 87-161 (452)
66 2z80_A TOLL-like receptor 2, v 99.6 8.1E-17 2.8E-21 140.8 5.1 121 67-188 72-195 (353)
67 2z63_A TOLL-like receptor 4, v 99.6 3.7E-16 1.3E-20 144.5 9.4 140 63-206 44-188 (570)
68 3j0a_A TOLL-like receptor 5; m 99.6 8.5E-16 2.9E-20 149.0 12.1 148 57-206 34-185 (844)
69 2ell_A Acidic leucine-rich nuc 99.6 4.6E-16 1.6E-20 121.7 8.4 123 61-186 39-165 (168)
70 1wwl_A Monocyte differentiatio 99.6 1.3E-16 4.5E-21 137.3 5.6 137 69-209 93-242 (312)
71 3g39_A Variable lymphocyte rec 99.6 1.1E-15 3.7E-20 120.2 10.3 109 97-212 11-119 (170)
72 3zyj_A Leucine-rich repeat-con 99.6 2E-15 6.7E-20 135.9 13.3 144 59-208 100-268 (440)
73 3o6n_A APL1; leucine-rich repe 99.6 5.9E-16 2E-20 137.0 9.7 114 68-181 66-179 (390)
74 1xku_A Decorin; proteoglycan, 99.6 8.9E-16 3E-20 132.8 10.6 133 67-207 141-275 (330)
75 1ziw_A TOLL-like receptor 3; i 99.6 8.7E-16 3E-20 145.2 11.3 149 57-207 35-183 (680)
76 3oja_B Anopheles plasmodium-re 99.6 8.6E-16 2.9E-20 143.5 10.8 134 69-206 49-182 (597)
77 2z81_A CD282 antigen, TOLL-lik 99.6 1.3E-16 4.3E-21 147.1 5.0 151 57-207 36-208 (549)
78 4ezg_A Putative uncharacterize 99.6 3.1E-16 1.1E-20 126.1 6.6 130 68-207 41-171 (197)
79 1xku_A Decorin; proteoglycan, 99.6 1.7E-15 5.8E-20 131.1 11.6 143 63-209 163-307 (330)
80 4b8c_D Glucose-repressible alc 99.6 3.5E-16 1.2E-20 149.3 7.5 123 63-189 216-338 (727)
81 3o6n_A APL1; leucine-rich repe 99.6 1.4E-15 4.8E-20 134.5 10.8 134 69-206 43-176 (390)
82 2r9u_A Variable lymphocyte rec 99.6 2.9E-15 9.8E-20 118.3 11.4 106 74-182 15-120 (174)
83 3j0a_A TOLL-like receptor 5; m 99.6 1.4E-15 4.9E-20 147.3 11.4 135 69-207 22-160 (844)
84 2z80_A TOLL-like receptor 2, v 99.6 1.1E-15 3.6E-20 133.7 9.3 132 71-207 52-186 (353)
85 2ft3_A Biglycan; proteoglycan, 99.6 2.1E-15 7.3E-20 130.6 11.0 142 66-208 142-307 (332)
86 4b8c_D Glucose-repressible alc 99.6 7.5E-16 2.6E-20 147.0 8.8 115 86-208 215-329 (727)
87 3oja_A Leucine-rich immune mol 99.6 1.7E-16 5.8E-21 144.9 4.1 133 70-210 119-252 (487)
88 1dce_A Protein (RAB geranylger 99.6 7.4E-16 2.5E-20 143.0 8.2 108 72-184 442-550 (567)
89 2xwt_C Thyrotropin receptor; s 99.6 9E-16 3.1E-20 126.9 7.9 134 66-206 50-190 (239)
90 2xwt_C Thyrotropin receptor; s 99.6 5.4E-16 1.9E-20 128.2 6.2 107 72-180 32-144 (239)
91 2ft3_A Biglycan; proteoglycan, 99.6 4.4E-15 1.5E-19 128.6 11.9 86 67-155 74-159 (332)
92 2r9u_A Variable lymphocyte rec 99.6 4.2E-15 1.4E-19 117.3 10.5 107 98-211 15-121 (174)
93 4glp_A Monocyte differentiatio 99.6 5.4E-16 1.8E-20 133.3 5.0 131 69-207 143-284 (310)
94 4glp_A Monocyte differentiatio 99.6 2.1E-15 7.1E-20 129.6 8.5 148 59-208 103-264 (310)
95 3o53_A Protein LRIM1, AGAP0063 99.6 5.5E-16 1.9E-20 133.7 4.9 106 94-206 119-225 (317)
96 2z7x_B TOLL-like receptor 1, v 99.6 1.9E-15 6.5E-20 138.5 8.3 134 68-208 321-457 (520)
97 3oja_A Leucine-rich immune mol 99.6 5.1E-16 1.8E-20 141.7 4.2 148 57-212 130-286 (487)
98 2je0_A Acidic leucine-rich nuc 99.6 1.9E-15 6.4E-20 115.9 6.7 114 61-176 32-149 (149)
99 4fmz_A Internalin; leucine ric 99.6 1.9E-14 6.6E-19 125.0 12.2 126 69-206 219-344 (347)
100 1h6t_A Internalin B; cell adhe 99.6 1.6E-14 5.5E-19 123.1 11.3 105 68-180 65-169 (291)
101 1h6t_A Internalin B; cell adhe 99.6 1.3E-14 4.5E-19 123.7 10.4 127 67-207 86-212 (291)
102 1xeu_A Internalin C; cellular 99.6 9.3E-15 3.2E-19 122.9 9.0 129 66-209 58-186 (263)
103 3a79_B TLR6, VLRB.59, TOLL-lik 99.5 9.1E-15 3.1E-19 135.4 9.5 127 71-207 52-181 (562)
104 1h6u_A Internalin H; cell adhe 99.5 4.2E-14 1.4E-18 121.5 13.0 126 67-206 81-206 (308)
105 3o53_A Protein LRIM1, AGAP0063 99.5 7.7E-16 2.6E-20 132.8 1.2 133 70-210 119-252 (317)
106 1h6u_A Internalin H; cell adhe 99.5 3.7E-14 1.3E-18 121.8 11.0 127 67-207 59-185 (308)
107 1m9s_A Internalin B; cell inva 99.5 6.8E-14 2.3E-18 130.7 12.1 126 67-206 83-208 (605)
108 1m9s_A Internalin B; cell inva 99.5 6.9E-14 2.3E-18 130.7 12.1 128 66-207 60-187 (605)
109 1xeu_A Internalin C; cellular 99.5 5.2E-14 1.8E-18 118.2 10.1 128 67-209 37-164 (263)
110 1ds9_A Outer arm dynein; leuci 99.5 2E-16 6.9E-21 127.3 -5.1 128 65-201 42-180 (198)
111 2ifg_A High affinity nerve gro 99.5 7E-14 2.4E-18 121.7 9.2 104 76-182 13-118 (347)
112 2ifg_A High affinity nerve gro 99.5 6.3E-14 2.2E-18 122.0 8.5 108 98-212 11-120 (347)
113 1o6v_A Internalin A; bacterial 99.5 1.2E-13 4E-18 125.1 10.3 124 70-207 264-387 (466)
114 3cvr_A Invasion plasmid antige 99.5 1.8E-13 6.2E-18 126.8 11.1 96 69-180 98-193 (571)
115 1a9n_A U2A', U2A'; complex (nu 99.5 7.4E-14 2.5E-18 110.1 7.3 113 63-180 34-153 (176)
116 4fmz_A Internalin; leucine ric 99.5 2.3E-13 7.9E-18 118.2 10.6 128 70-209 198-325 (347)
117 1o6v_A Internalin A; bacterial 99.4 3.2E-13 1.1E-17 122.3 11.0 125 69-207 241-365 (466)
118 1ds9_A Outer arm dynein; leuci 99.4 4.6E-16 1.6E-20 125.2 -7.0 130 71-209 18-154 (198)
119 1dce_A Protein (RAB geranylger 99.4 3.4E-13 1.1E-17 125.2 10.8 103 96-207 442-545 (567)
120 2ast_B S-phase kinase-associat 99.4 5.4E-15 1.8E-19 127.9 -1.9 133 70-206 117-258 (336)
121 2ast_B S-phase kinase-associat 99.4 6.5E-15 2.2E-19 127.4 -1.4 136 68-207 90-234 (336)
122 3bz5_A Internalin-J, INLJ; leu 99.4 1E-12 3.5E-17 118.9 12.4 122 67-206 60-181 (457)
123 3goz_A Leucine-rich repeat-con 99.4 1.9E-14 6.4E-19 126.3 -0.1 140 67-206 46-207 (362)
124 3bz5_A Internalin-J, INLJ; leu 99.4 4.1E-12 1.4E-16 114.9 13.4 85 91-184 166-250 (457)
125 3cvr_A Invasion plasmid antige 99.4 8.7E-13 3E-17 122.3 8.9 115 72-207 121-242 (571)
126 2ca6_A RAN GTPase-activating p 99.4 5.5E-14 1.9E-18 124.2 0.1 132 71-206 159-314 (386)
127 2ca6_A RAN GTPase-activating p 99.3 3.9E-14 1.3E-18 125.2 -2.2 135 68-206 91-255 (386)
128 3g06_A SSPH2 (leucine-rich rep 99.3 8.7E-12 3E-16 116.8 12.2 77 119-208 221-297 (622)
129 1jl5_A Outer protein YOPM; leu 99.3 7.7E-12 2.6E-16 113.0 11.5 78 71-156 131-208 (454)
130 3goz_A Leucine-rich repeat-con 99.3 3.1E-13 1.1E-17 118.5 2.0 149 59-207 10-179 (362)
131 1jl5_A Outer protein YOPM; leu 99.3 3.1E-11 1.1E-15 109.1 12.2 109 63-185 146-254 (454)
132 3g06_A SSPH2 (leucine-rich rep 99.2 2.7E-11 9.3E-16 113.4 9.7 87 95-190 221-307 (622)
133 1z7x_W Ribonuclease inhibitor; 99.2 3.2E-13 1.1E-17 121.6 -3.5 135 68-206 224-409 (461)
134 4ay9_X Follicle-stimulating ho 99.2 2.1E-11 7.2E-16 106.3 6.8 69 65-133 48-118 (350)
135 4ay9_X Follicle-stimulating ho 99.2 3.3E-11 1.1E-15 105.0 6.9 117 66-185 74-219 (350)
136 1z7x_W Ribonuclease inhibitor; 99.1 6.6E-12 2.3E-16 112.9 -1.5 110 72-181 86-213 (461)
137 3un9_A NLR family member X1; l 98.9 1.5E-11 5E-16 108.4 -5.4 137 71-207 101-251 (372)
138 3un9_A NLR family member X1; l 98.8 5.1E-11 1.8E-15 104.9 -6.6 138 70-207 71-223 (372)
139 3ogk_B Coronatine-insensitive 98.8 3.1E-10 1.1E-14 105.1 -2.1 134 69-206 376-524 (592)
140 3sb4_A Hypothetical leucine ri 98.7 2.4E-08 8.2E-13 86.1 8.0 83 118-206 225-308 (329)
141 3sb4_A Hypothetical leucine ri 98.7 2.5E-08 8.6E-13 85.9 7.3 118 70-189 100-271 (329)
142 3ogk_B Coronatine-insensitive 98.6 5.2E-09 1.8E-13 96.9 1.6 102 73-175 140-251 (592)
143 3rw6_A Nuclear RNA export fact 98.6 2.8E-08 9.4E-13 83.3 5.1 82 100-184 148-237 (267)
144 1io0_A Tropomodulin; LRR prote 98.6 3.7E-09 1.3E-13 83.8 -1.2 111 69-179 34-163 (185)
145 2p1m_B Transport inhibitor res 98.5 7.4E-09 2.5E-13 95.8 -1.5 132 70-206 371-517 (594)
146 3rw6_A Nuclear RNA export fact 98.5 1.1E-07 3.9E-12 79.5 5.9 62 141-206 168-231 (267)
147 1io0_A Tropomodulin; LRR prote 98.5 1.2E-08 4.2E-13 80.8 -1.4 120 87-206 28-162 (185)
148 2p1m_B Transport inhibitor res 98.3 1.5E-07 5.1E-12 87.0 1.3 36 70-105 104-140 (594)
149 2ra8_A Uncharacterized protein 98.2 1E-07 3.5E-12 83.5 -2.5 15 166-180 278-292 (362)
150 2ra8_A Uncharacterized protein 98.1 4.5E-07 1.5E-11 79.3 0.1 112 71-182 193-322 (362)
151 4fdw_A Leucine rich hypothetic 98.0 1.9E-05 6.6E-10 69.9 8.4 61 66-128 175-235 (401)
152 4fdw_A Leucine rich hypothetic 97.9 2.7E-05 9.2E-10 68.9 8.3 132 65-206 220-356 (401)
153 3e4g_A ATP synthase subunit S, 97.8 6E-06 2E-10 64.5 2.3 35 71-105 61-95 (176)
154 3e4g_A ATP synthase subunit S, 97.7 1.3E-05 4.5E-10 62.6 1.9 86 95-180 61-153 (176)
155 3rfe_A Platelet glycoprotein I 97.5 0.00014 4.7E-09 53.9 5.4 56 123-180 12-68 (130)
156 2l2t_A Receptor tyrosine-prote 97.4 0.00052 1.8E-08 40.1 5.4 35 222-256 8-42 (44)
157 3rfe_A Platelet glycoprotein I 97.2 0.00079 2.7E-08 49.7 6.5 56 75-132 12-68 (130)
158 2ks1_B Epidermal growth factor 97.1 0.0012 4.1E-08 38.6 5.1 34 222-255 9-42 (44)
159 1pgv_A TMD-1, tropomodulin TMD 97.0 0.0001 3.6E-09 58.5 0.3 59 119-177 70-136 (197)
160 1pgv_A TMD-1, tropomodulin TMD 97.0 9E-05 3.1E-09 58.9 -0.7 85 69-153 39-136 (197)
161 4gt6_A Cell surface protein; l 96.8 0.0044 1.5E-07 54.2 8.8 84 91-177 284-367 (394)
162 2jwa_A Receptor tyrosine-prote 96.8 0.0036 1.2E-07 36.4 5.2 32 223-255 11-42 (44)
163 2k1k_A Ephrin type-A receptor 96.6 0.0033 1.1E-07 35.6 4.3 33 218-250 5-37 (38)
164 4gt6_A Cell surface protein; l 96.5 0.0052 1.8E-07 53.7 7.1 105 69-179 286-390 (394)
165 4h09_A Hypothetical leucine ri 96.5 0.013 4.5E-07 50.7 9.5 106 71-180 217-322 (379)
166 4h09_A Hypothetical leucine ri 96.4 0.0057 2E-07 53.0 6.5 107 68-177 237-343 (379)
167 4fs7_A Uncharacterized protein 96.2 0.019 6.5E-07 50.1 8.7 108 67-177 67-195 (394)
168 4fs7_A Uncharacterized protein 96.1 0.012 4E-07 51.5 6.8 59 117-177 295-353 (394)
169 2knc_A Integrin alpha-IIB; tra 91.4 0.63 2.2E-05 28.2 5.5 36 221-256 10-46 (54)
170 2klu_A T-cell surface glycopro 91.2 0.36 1.2E-05 30.3 4.4 15 229-243 12-26 (70)
171 2l8s_A Integrin alpha-1; trans 88.8 1.3 4.5E-05 26.7 5.4 15 222-236 8-22 (54)
172 2ks1_B Epidermal growth factor 87.4 1.5 5.3E-05 25.3 4.9 16 239-254 29-44 (44)
173 2l2t_A Receptor tyrosine-prote 85.0 1.6 5.4E-05 25.2 4.1 33 226-258 9-41 (44)
174 1iij_A ERBB-2 receptor protein 84.9 0.34 1.2E-05 26.6 1.1 17 234-250 17-33 (35)
175 2klu_A T-cell surface glycopro 84.6 0.8 2.7E-05 28.8 2.9 29 225-253 12-40 (70)
176 2knc_B Integrin beta-3; transm 79.6 1.2 4E-05 29.5 2.5 12 222-233 9-20 (79)
177 2l34_A TYRO protein tyrosine k 77.0 3.7 0.00013 22.1 3.5 24 221-244 4-27 (33)
178 2k9y_A Ephrin type-A receptor 76.8 3 0.0001 23.4 3.4 15 227-241 13-27 (41)
179 1zza_A Stannin, AG8_1; helix, 73.3 7.6 0.00026 24.8 4.8 21 244-264 31-51 (90)
180 2k1a_A Integrin alpha-IIB; sin 71.3 8 0.00027 22.0 4.2 13 222-234 9-21 (42)
181 2l9u_A Receptor tyrosine-prote 67.1 11 0.00037 20.3 3.8 14 239-252 21-34 (40)
182 2jwa_A Receptor tyrosine-prote 66.7 7.8 0.00027 22.3 3.5 11 245-255 29-39 (44)
183 3qrx_B Melittin; calcium-bindi 56.1 6.1 0.00021 19.4 1.5 16 239-254 10-25 (26)
184 2k9j_B Integrin beta-3; transm 56.0 18 0.00062 20.6 3.8 9 240-248 23-31 (43)
185 2l8s_A Integrin alpha-1; trans 52.1 30 0.001 20.8 4.4 25 225-249 8-32 (54)
186 1q90_G Cytochrome B6F complex 45.9 35 0.0012 18.5 3.7 21 227-247 7-27 (37)
187 1q55_A EP-cadherin, C-cadherin 45.5 6 0.00021 38.3 1.0 14 220-233 701-714 (880)
188 2knc_A Integrin alpha-IIB; tra 37.9 65 0.0022 19.3 4.4 37 224-260 10-47 (54)
189 2jp3_A FXYD domain-containing 37.3 33 0.0011 21.5 3.1 9 225-233 18-26 (67)
190 2jo1_A Phospholemman; FXYD1, N 32.9 58 0.002 20.6 3.7 9 225-233 17-25 (72)
191 2knc_B Integrin beta-3; transm 32.5 64 0.0022 20.9 4.1 26 224-249 8-33 (79)
192 1afo_A Glycophorin A; integral 32.0 68 0.0023 17.7 4.8 7 225-231 11-17 (40)
193 1vf5_G Protein PET G; photosyn 29.5 37 0.0013 18.4 2.1 12 227-238 7-18 (37)
194 1zza_A Stannin, AG8_1; helix, 29.2 55 0.0019 20.8 3.2 28 233-260 23-50 (90)
195 2llm_A Amyloid beta A4 protein 32.1 14 0.00048 21.0 0.0 12 224-235 17-28 (43)
196 1hgv_A PH75 inovirus major coa 25.4 92 0.0032 17.2 3.3 7 246-252 35-41 (46)
197 2zxe_G FXYD10, phospholemman-l 23.1 61 0.0021 20.7 2.5 9 225-233 20-28 (74)
198 2lz0_A Uncharacterized protein 22.2 1.8E+02 0.0062 19.4 5.6 13 91-103 16-28 (100)
199 2k21_A Potassium voltage-gated 22.1 1.6E+02 0.0055 21.0 4.8 16 237-252 65-80 (138)
200 2k9p_A Pheromone alpha factor 21.2 1.2E+02 0.004 19.7 3.7 7 227-233 21-27 (80)
201 2lp1_A C99; alzheimer'S D memb 23.4 25 0.00087 24.6 0.0 10 226-235 32-41 (122)
No 1
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.93 E-value=9.6e-26 Score=194.87 Aligned_cols=176 Identities=28% Similarity=0.533 Sum_probs=155.8
Q ss_pred CCChhHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeecC----CCeEEEEeeCCCccc--cCCccCcCC
Q 024632 21 SSDPNDEACLTHLSQSLKDPYKNLQNWTKSTFSNACNGFTSYLPGATCNN----GRIYKLSLTNLSLQG--SISPYLSNC 94 (265)
Q Consensus 21 ~~~~~~~~~l~~~~~~l~~~~~~~~~w~~~~~~~~c~~~~~~~~~~~~~~----~~l~~L~L~~n~l~~--~~p~~l~~l 94 (265)
.|.++|.++|.+||+++.+|. .+.+|... .++|. +.|.|+.|.. .+|+.|++++|.+++ .+|..+..+
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~~-~l~~W~~~--~~~C~---~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l 75 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNPT-TLSSWLPT--TDCCN---RTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANL 75 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCG-GGTTCCTT--SCTTT---TCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGC
T ss_pred CCCHHHHHHHHHHHHhcCCcc-cccCCCCC--CCCCc---CCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCC
Confidence 477899999999999998876 78899763 36775 2499999974 689999999999998 899999999
Q ss_pred CCCCEEECcC-CCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEEEccCccCcccCChhccCCCCCCEEE
Q 024632 95 TNLQSLDLSS-NALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFD 173 (265)
Q Consensus 95 ~~L~~L~Ls~-N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 173 (265)
++|++|++++ |.+.+.+|..+..+++|++|++++|.+++.+|..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus 76 ~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 155 (313)
T 1ogq_A 76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGIT 155 (313)
T ss_dssp TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEE
T ss_pred CCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEE
Confidence 9999999995 999999999999999999999999999989999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCChhhhccCCCCC-CCCCCCCCCCC
Q 024632 174 VSNNKLSGPIPASLGNRSGNLP-KFNASSFEGNK 206 (265)
Q Consensus 174 l~~N~l~g~~p~~~~~~~~~l~-~l~~~~~~~N~ 206 (265)
+++|++++.+|..+.. ++ .++.+++++|.
T Consensus 156 L~~N~l~~~~p~~l~~----l~~~L~~L~L~~N~ 185 (313)
T 1ogq_A 156 FDGNRISGAIPDSYGS----FSKLFTSMTISRNR 185 (313)
T ss_dssp CCSSCCEEECCGGGGC----CCTTCCEEECCSSE
T ss_pred CcCCcccCcCCHHHhh----hhhcCcEEECcCCe
Confidence 9999999999998887 44 56666666664
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.88 E-value=4.9e-23 Score=197.79 Aligned_cols=119 Identities=40% Similarity=0.677 Sum_probs=66.8
Q ss_pred CCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEEEccCccCcccCChhccCCCCCCEEEcc
Q 024632 96 NLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVS 175 (265)
Q Consensus 96 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~ 175 (265)
+|+.||+++|+++|.+|..++.+++|+.|+|++|.++|.+|..++.+++|+.||+++|+++|.+|..+..+++|++||++
T Consensus 633 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls 712 (768)
T 3rgz_A 633 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLS 712 (768)
T ss_dssp CCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECC
T ss_pred cccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECc
Confidence 34444444444444455445555555555555555555555555555555555555555555555555555555555555
Q ss_pred cCCCCCCCChhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 024632 176 NNKLSGPIPASLGNRSGNLPKFNASSFEGNKDLYGYPLPPMKSK 219 (265)
Q Consensus 176 ~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~~~c~~~~~~~~~~ 219 (265)
+|+++|.+|.. +.+..+...+|.||+.+||.|+++|...
T Consensus 713 ~N~l~g~iP~~-----~~~~~~~~~~~~gN~~Lcg~~l~~C~~~ 751 (768)
T 3rgz_A 713 NNNLSGPIPEM-----GQFETFPPAKFLNNPGLCGYPLPRCDPS 751 (768)
T ss_dssp SSEEEEECCSS-----SSGGGSCGGGGCSCTEEESTTSCCCCSC
T ss_pred CCcccccCCCc-----hhhccCCHHHhcCCchhcCCCCcCCCCC
Confidence 55555555432 2355667778999999999988766443
No 3
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.86 E-value=1.7e-22 Score=195.42 Aligned_cols=179 Identities=20% Similarity=0.268 Sum_probs=147.3
Q ss_pred CCCChhHHHHHHHHHHhCCCCCCCCCCCCCCC---CCCC--CCCCCCCC------------Cceeec-CCCeEEEEeeCC
Q 024632 20 CSSDPNDEACLTHLSQSLKDPYKNLQNWTKST---FSNA--CNGFTSYL------------PGATCN-NGRIYKLSLTNL 81 (265)
Q Consensus 20 ~~~~~~~~~~l~~~~~~l~~~~~~~~~w~~~~---~~~~--c~~~~~~~------------~~~~~~-~~~l~~L~L~~n 81 (265)
++...+|..||.+||+++.+| +|+..+ ..++ |+ | +|+.|+ -.+|+.|+|+++
T Consensus 264 ~~~~~~d~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C~-----W~~~~~~~~w~~~~GV~C~~~~~V~~L~Ls~~ 333 (876)
T 4ecn_A 264 TAEYIKDYKALKAIWEALDGK-----NWRYYSGTINNTIHSLN-----WNFNKELDMWGDQPGVDLDNNGRVTGLSLAGF 333 (876)
T ss_dssp CCHHHHHHHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCCS-----CCCSSCGGGTTCCTTEEECTTSCEEEEECTTT
T ss_pred cccchHHHHHHHHHHHHcCCC-----CCCcCCCcccccCCccc-----cccccccccccCcCceEecCCCCEEEEECccC
Confidence 344557999999999999876 676543 1245 76 7 999997 478999999999
Q ss_pred CccccCCccCcCCCCCCEEEC-cCCCCCCC--------------------------------------------------
Q 024632 82 SLQGSISPYLSNCTNLQSLDL-SSNALTGS-------------------------------------------------- 110 (265)
Q Consensus 82 ~l~~~~p~~l~~l~~L~~L~L-s~N~l~~~-------------------------------------------------- 110 (265)
++.|.+|+.++++++|+.|+| ++|.++|.
T Consensus 334 ~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~ 413 (876)
T 4ecn_A 334 GAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPE 413 (876)
T ss_dssp CCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTT
T ss_pred CCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCcc
Confidence 999999999999999999999 77754333
Q ss_pred --------------------------CCCCcccCcccceeccccccCCC-----------------CCchHhh--hCCcC
Q 024632 111 --------------------------IPADLQYLVNLAVLNLSANRLAG-----------------EIPPQLT--LCAYL 145 (265)
Q Consensus 111 --------------------------~p~~l~~l~~L~~L~Ls~N~l~~-----------------~~p~~~~--~l~~L 145 (265)
+|..++++++|++|+|++|.+++ .+|..++ ++++|
T Consensus 414 ~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L 493 (876)
T 4ecn_A 414 MKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDL 493 (876)
T ss_dssp SCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTC
T ss_pred ccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCC
Confidence 77788899999999999999997 3888877 99999
Q ss_pred CEEEccCccCcccCChhccCCCCCCEEEcccCC-CCC-CCChhhhccC---CCCCCCCCCCCCCCCCC
Q 024632 146 NVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNK-LSG-PIPASLGNRS---GNLPKFNASSFEGNKDL 208 (265)
Q Consensus 146 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~-l~g-~~p~~~~~~~---~~l~~l~~~~~~~N~~~ 208 (265)
++|++++|++.+.+|..++.+++|+.|++++|+ ++| .+|..++++. ..++.|+.+++++|...
T Consensus 494 ~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~ 561 (876)
T 4ecn_A 494 TDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE 561 (876)
T ss_dssp CEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC
T ss_pred CEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC
Confidence 999999999999999999999999999999998 988 8888777532 33456777777777643
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.86 E-value=4.4e-22 Score=191.21 Aligned_cols=161 Identities=25% Similarity=0.349 Sum_probs=115.2
Q ss_pred cCCCCCChhHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeecCCCeEEEEeeCCCcccc---CCccCcC
Q 024632 17 LPLCSSDPNDEACLTHLSQSLKDPYKNLQNWTKSTFSNACNGFTSYLPGATCNNGRIYKLSLTNLSLQGS---ISPYLSN 93 (265)
Q Consensus 17 ~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~w~~~~~~~~c~~~~~~~~~~~~~~~~l~~L~L~~n~l~~~---~p~~l~~ 93 (265)
++++++.++|++||++||+.+.+|. .+.+|... .++|. |.|+.|+..+|+.|+|+++.+.|. +|+.+.+
T Consensus 4 ~~~~~~~~~~~~all~~k~~~~~~~-~l~~W~~~--~~~C~-----w~gv~C~~~~v~~L~L~~~~l~g~~~~l~~~l~~ 75 (768)
T 3rgz_A 4 ASPSQSLYREIHQLISFKDVLPDKN-LLPDWSSN--KNPCT-----FDGVTCRDDKVTSIDLSSKPLNVGFSAVSSSLLS 75 (768)
T ss_dssp ----CCHHHHHHHHHHHHTTCSCTT-SSTTCCTT--SCGGG-----STTEEEETTEEEEEECTTSCCCEEHHHHHHHTTT
T ss_pred CccccCCHHHHHHHHHHHhhCCCcc-cccCCCCC--CCCcC-----CcceEECCCcEEEEECCCCCcCCccCccChhHhc
Confidence 4445567889999999999999988 89999753 36886 999999988999999999999987 7766666
Q ss_pred CCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCch--HhhhCCcCCEEEccCccCcccCChhc-cCCCCCC
Q 024632 94 CTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPP--QLTLCAYLNVIDLHDNLLTGQIPQQL-GLLVRLS 170 (265)
Q Consensus 94 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~--~~~~l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~ 170 (265)
+++|+.++++.|.+. .+|+.++.+++|++|+|++|.++|.+|. .++++++|++|++++|.+++.+|..+ ..+++|+
T Consensus 76 L~~L~~l~~~~~~~~-~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~ 154 (768)
T 3rgz_A 76 LTGLESLFLSNSHIN-GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLE 154 (768)
T ss_dssp CTTCCEEECTTSCEE-ECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCS
T ss_pred cCcccccCCcCCCcC-CCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCC
Confidence 666666666666654 3555666666677777776666666666 66666666666666666666666544 5566666
Q ss_pred EEEcccCCCCCCCChh
Q 024632 171 AFDVSNNKLSGPIPAS 186 (265)
Q Consensus 171 ~L~l~~N~l~g~~p~~ 186 (265)
+|++++|.+++..|..
T Consensus 155 ~L~Ls~n~l~~~~~~~ 170 (768)
T 3rgz_A 155 VLDLSANSISGANVVG 170 (768)
T ss_dssp EEECCSSCCEEETHHH
T ss_pred EEECCCCccCCcCChh
Confidence 6666666666555544
No 5
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.86 E-value=3.2e-22 Score=188.35 Aligned_cols=178 Identities=19% Similarity=0.212 Sum_probs=148.3
Q ss_pred ChhHHHHHHHHHHhCCCCCCC--------CCCCCCCCCCCCCCCCCCCC---CceeecC-CCeEEEEeeCCCccccCCcc
Q 024632 23 DPNDEACLTHLSQSLKDPYKN--------LQNWTKSTFSNACNGFTSYL---PGATCNN-GRIYKLSLTNLSLQGSISPY 90 (265)
Q Consensus 23 ~~~~~~~l~~~~~~l~~~~~~--------~~~w~~~~~~~~c~~~~~~~---~~~~~~~-~~l~~L~L~~n~l~~~~p~~ 90 (265)
...|.+||.++++++.++... ..+|+.. .++|. | +|+.|+. .+|+.|+|+++++.|.+|+.
T Consensus 28 ~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~--~~~c~-----w~~~~GV~C~~~~~V~~L~L~~~~l~g~lp~~ 100 (636)
T 4eco_A 28 YIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFN--KELDM-----WGAQPGVSLNSNGRVTGLSLEGFGASGRVPDA 100 (636)
T ss_dssp HHHHHHHHHHHHHHTTGGGCCCCC------CCCCCS--SCGGG-----TTCCTTEEECTTCCEEEEECTTSCCEEEECGG
T ss_pred HHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCC--CCccc-----ccCCCCeEEcCCCCEEEEEecCcccCCcCChH
Confidence 346889999999998765433 2379853 36776 8 9999964 58999999999999999999
Q ss_pred CcCCCCCCEEECcCCCC---------------------------------------------------------------
Q 024632 91 LSNCTNLQSLDLSSNAL--------------------------------------------------------------- 107 (265)
Q Consensus 91 l~~l~~L~~L~Ls~N~l--------------------------------------------------------------- 107 (265)
++++++|+.|+|++|.+
T Consensus 101 l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 180 (636)
T 4eco_A 101 IGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSR 180 (636)
T ss_dssp GGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCC
T ss_pred HhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccc
Confidence 99999999999998843
Q ss_pred ---------------CCCCCCCcccCcccceeccccccCCCC-----------------CchHhh--hCCcCCEEEccCc
Q 024632 108 ---------------TGSIPADLQYLVNLAVLNLSANRLAGE-----------------IPPQLT--LCAYLNVIDLHDN 153 (265)
Q Consensus 108 ---------------~~~~p~~l~~l~~L~~L~Ls~N~l~~~-----------------~p~~~~--~l~~L~~L~Ls~N 153 (265)
+| +|..++++++|++|+|++|.+++. +|..++ ++++|++|++++|
T Consensus 181 ~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n 259 (636)
T 4eco_A 181 ITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNC 259 (636)
T ss_dssp CCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECC
T ss_pred cchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCC
Confidence 34 788899999999999999999975 899988 9999999999999
Q ss_pred cCcccCChhccCCCCCCEEEcccCC-CCC-CCChhhhcc--CCCCCCCCCCCCCCCCCC
Q 024632 154 LLTGQIPQQLGLLVRLSAFDVSNNK-LSG-PIPASLGNR--SGNLPKFNASSFEGNKDL 208 (265)
Q Consensus 154 ~l~~~~p~~~~~l~~L~~L~l~~N~-l~g-~~p~~~~~~--~~~l~~l~~~~~~~N~~~ 208 (265)
++.+.+|..++++++|++|++++|+ ++| .+|..++++ ...++.++.+++++|...
T Consensus 260 ~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~ 318 (636)
T 4eco_A 260 PNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK 318 (636)
T ss_dssp TTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS
T ss_pred cCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC
Confidence 9999999999999999999999998 998 899888762 011266777777777643
No 6
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.84 E-value=2.6e-20 Score=155.67 Aligned_cols=150 Identities=20% Similarity=0.193 Sum_probs=128.7
Q ss_pred CCCCCCCCceeecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCc
Q 024632 57 NGFTSYLPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIP 136 (265)
Q Consensus 57 ~~~~~~~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 136 (265)
|.+.+..+..+.++++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+
T Consensus 45 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 124 (251)
T 3m19_A 45 TGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPS 124 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcCh
Confidence 44455455567788999999999999998777778999999999999999996666778899999999999999997666
Q ss_pred hHhhhCCcCCEEEccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCCCCCC
Q 024632 137 PQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKDLYG 210 (265)
Q Consensus 137 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~~~c~ 210 (265)
..+..+++|++|++++|++++..+..+..+++|+.|++++|++++..|..+.. ++.++.+++++|++.|.
T Consensus 125 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~----l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 125 GVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDR----LGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT----CTTCCEEECCSCCBCTT
T ss_pred hHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhC----CCCCCEEEeeCCceeCC
Confidence 66788999999999999999666667899999999999999999766666665 78899999999998886
No 7
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.84 E-value=8.6e-21 Score=155.73 Aligned_cols=138 Identities=18% Similarity=0.170 Sum_probs=125.2
Q ss_pred CCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEEEc
Q 024632 71 GRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDL 150 (265)
Q Consensus 71 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 150 (265)
+++++|++++|.+++..+..+..+++|++|+|++|.+++..|..|..+++|++|+|++|.++...+..+..+++|++|++
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence 57999999999999777778999999999999999999777899999999999999999999665566789999999999
Q ss_pred cCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCCCCCCCC
Q 024632 151 HDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKDLYGYP 212 (265)
Q Consensus 151 s~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~~~c~~~ 212 (265)
++|++++..|..|..+++|+.|++++|++++..+..+.. ++.++.+++++|++.|.+.
T Consensus 112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~----l~~L~~L~L~~N~~~c~c~ 169 (220)
T 2v9t_B 112 NANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSP----LRAIQTMHLAQNPFICDCH 169 (220)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT----CTTCCEEECCSSCEECSGG
T ss_pred CCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhC----CCCCCEEEeCCCCcCCCCc
Confidence 999999888899999999999999999999776666766 8889999999999999764
No 8
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.84 E-value=8.2e-22 Score=170.14 Aligned_cols=152 Identities=32% Similarity=0.490 Sum_probs=97.1
Q ss_pred CCCCCCceeecCCCeEEEEeeCCCccccCCccCcCCC-CCCEEECcCCCCCCCCCCC-----------------------
Q 024632 59 FTSYLPGATCNNGRIYKLSLTNLSLQGSISPYLSNCT-NLQSLDLSSNALTGSIPAD----------------------- 114 (265)
Q Consensus 59 ~~~~~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~-~L~~L~Ls~N~l~~~~p~~----------------------- 114 (265)
+.+..|..+..+++|++|++++|.+++.+|..+..++ +|++|++++|.+++.+|..
T Consensus 137 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~ 216 (313)
T 1ogq_A 137 LSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVL 216 (313)
T ss_dssp EESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGG
T ss_pred cCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHH
Confidence 3334555556666666666666666666666666665 6666666666655544444
Q ss_pred cccCcccceeccccccCCCCCchHhhhCCcCCEEEccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCC
Q 024632 115 LQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNL 194 (265)
Q Consensus 115 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l 194 (265)
+..+++|+.|++++|.+++.+|. +..+++|++|++++|++++.+|..+..+++|+.|++++|+++|.+|.. . .+
T Consensus 217 ~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~----~l 290 (313)
T 1ogq_A 217 FGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-G----NL 290 (313)
T ss_dssp CCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-T----TG
T ss_pred HhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-c----cc
Confidence 44455555555555555543333 455566666666666666666666666777777777777777666654 2 37
Q ss_pred CCCCCCCCCCCCCCCCCCCCCC
Q 024632 195 PKFNASSFEGNKDLYGYPLPPM 216 (265)
Q Consensus 195 ~~l~~~~~~~N~~~c~~~~~~~ 216 (265)
+.++.+++.+|+++||.|++.|
T Consensus 291 ~~L~~l~l~~N~~lc~~p~~~C 312 (313)
T 1ogq_A 291 QRFDVSAYANNKCLCGSPLPAC 312 (313)
T ss_dssp GGSCGGGTCSSSEEESTTSSCC
T ss_pred cccChHHhcCCCCccCCCCCCC
Confidence 7888889999999999877654
No 9
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.84 E-value=3.3e-20 Score=153.13 Aligned_cols=137 Identities=20% Similarity=0.186 Sum_probs=122.6
Q ss_pred CCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEEEc
Q 024632 71 GRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDL 150 (265)
Q Consensus 71 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 150 (265)
+++++|++++|.+++..|..+..+++|++|+|++|.++...+..+..+++|++|+|++|.+++..+..+..+++|++|++
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 119 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence 57999999999999888888999999999999999998555566789999999999999999777777899999999999
Q ss_pred cCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCCCCCCCC
Q 024632 151 HDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKDLYGYP 212 (265)
Q Consensus 151 s~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~~~c~~~ 212 (265)
++|+++ .+|..+..+++|+.|++++|++++..+..+.. ++.++.+++++|++.|.++
T Consensus 120 s~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~----l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 120 CCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDR----LSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp CSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTT----CTTCCEEECTTSCBCTTBG
T ss_pred cCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhC----CCCCCEEEeeCCCccCCcc
Confidence 999999 88999999999999999999999665555655 8889999999999998763
No 10
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.83 E-value=2e-20 Score=153.53 Aligned_cols=138 Identities=14% Similarity=0.119 Sum_probs=125.0
Q ss_pred CCeEEEEeeCCCccccCC-ccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEEE
Q 024632 71 GRIYKLSLTNLSLQGSIS-PYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVID 149 (265)
Q Consensus 71 ~~l~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 149 (265)
..+++|++++|.+++..+ ..+..+++|++|++++|.+++..+..|..+++|++|+|++|.+++..+..+..+++|++|+
T Consensus 32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 111 (220)
T 2v70_A 32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLM 111 (220)
T ss_dssp TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEE
T ss_pred CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEE
Confidence 356899999999997644 4588999999999999999976677899999999999999999988888899999999999
Q ss_pred ccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCCCCCCCC
Q 024632 150 LHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKDLYGYP 212 (265)
Q Consensus 150 Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~~~c~~~ 212 (265)
+++|++++..|..+..+++|+.|++++|++++..|..+.. ++.++.+++++|++.|.++
T Consensus 112 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~----l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 112 LRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDT----LHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp CTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTT----CTTCCEEECCSCCEECSGG
T ss_pred CCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcC----CCCCCEEEecCcCCcCCCc
Confidence 9999999888999999999999999999999888888877 8889999999999998764
No 11
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.83 E-value=3.3e-21 Score=167.46 Aligned_cols=160 Identities=17% Similarity=0.273 Sum_probs=97.2
Q ss_pred CCCCChhHHHHHHHHHHhC-CCCCCCCCCCC---CCCCCCCCCCCCCCCCceeec----------CCCeEEEEeeCCCcc
Q 024632 19 LCSSDPNDEACLTHLSQSL-KDPYKNLQNWT---KSTFSNACNGFTSYLPGATCN----------NGRIYKLSLTNLSLQ 84 (265)
Q Consensus 19 ~~~~~~~~~~~l~~~~~~l-~~~~~~~~~w~---~~~~~~~c~~~~~~~~~~~~~----------~~~l~~L~L~~n~l~ 84 (265)
..++..+|.++|.+||..+ .++......|. ... .+.|+ |.|+.|. .+++++|++++|.++
T Consensus 21 ~~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~-~~~~~-----~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~ 94 (328)
T 4fcg_A 21 GSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNN-PQIET-----RTGRALKATADLLEDATQPGRVALELRSVPLP 94 (328)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTC-TTSCC-----SHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS
T ss_pred ccccCchHHHHHHHHHHhccCCchhhhhhhccccccc-ccccc-----cCCcchhhhHHHHhcccccceeEEEccCCCch
Confidence 3445678899999999988 46666667784 111 34565 6666552 256666777776666
Q ss_pred ccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEEEccCccCcccCChhcc
Q 024632 85 GSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLG 164 (265)
Q Consensus 85 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 164 (265)
.+|..+..+++|++|++++|.++ .+|..+..+++|++|++++|.++ .+|..+..+++|++|++++|++.+.+|..+.
T Consensus 95 -~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~ 171 (328)
T 4fcg_A 95 -QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLA 171 (328)
T ss_dssp -SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSE
T ss_pred -hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHh
Confidence 56666666666666666666666 66666666666666666666666 5566666666666666666555555554433
Q ss_pred C---------CCCCCEEEcccCCCCCCCChhhh
Q 024632 165 L---------LVRLSAFDVSNNKLSGPIPASLG 188 (265)
Q Consensus 165 ~---------l~~L~~L~l~~N~l~g~~p~~~~ 188 (265)
. +++|+.|++++|.++ .+|..+.
T Consensus 172 ~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~ 203 (328)
T 4fcg_A 172 STDASGEHQGLVNLQSLRLEWTGIR-SLPASIA 203 (328)
T ss_dssp EEC-CCCEEESTTCCEEEEEEECCC-CCCGGGG
T ss_pred hccchhhhccCCCCCEEECcCCCcC-cchHhhc
Confidence 2 444444444444444 4444433
No 12
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.82 E-value=2e-19 Score=151.75 Aligned_cols=141 Identities=21% Similarity=0.165 Sum_probs=83.7
Q ss_pred eecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCC
Q 024632 67 TCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLN 146 (265)
Q Consensus 67 ~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 146 (265)
+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+
T Consensus 81 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 160 (270)
T 2o6q_A 81 FKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLK 160 (270)
T ss_dssp TSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred hcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccc
Confidence 34455555555555555543334455555666666666666544444455666666666666666644444456666666
Q ss_pred EEEccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCCCCCCC
Q 024632 147 VIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKDLYGY 211 (265)
Q Consensus 147 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~~~c~~ 211 (265)
+|++++|++++..+..+..+++|+.|++++|++++..+..+.. ++.++.+++++|++.|.+
T Consensus 161 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~----l~~L~~L~l~~N~~~c~c 221 (270)
T 2o6q_A 161 ELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDS----LEKLKMLQLQENPWDCTC 221 (270)
T ss_dssp EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT----CTTCCEEECCSSCBCCSS
T ss_pred eeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhcc----ccCCCEEEecCCCeeCCC
Confidence 6666666666544445666666666666666666433333433 667777788888877765
No 13
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.81 E-value=1.8e-19 Score=152.32 Aligned_cols=143 Identities=23% Similarity=0.170 Sum_probs=119.2
Q ss_pred eeecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcC
Q 024632 66 ATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYL 145 (265)
Q Consensus 66 ~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 145 (265)
.+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|
T Consensus 80 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 159 (272)
T 3rfs_A 80 ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNL 159 (272)
T ss_dssp GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccC
Confidence 45567888999999998887666668888999999999999986666668888999999999999987666677888999
Q ss_pred CEEEccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCCCCCCCC
Q 024632 146 NVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKDLYGYP 212 (265)
Q Consensus 146 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~~~c~~~ 212 (265)
++|++++|++++..+..+..+++|+.|++++|++++..|..+.. ++.++.+++++|++.|.++
T Consensus 160 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~----l~~L~~L~l~~N~~~~~~~ 222 (272)
T 3rfs_A 160 TELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDR----LTSLQYIWLHDNPWDCTCP 222 (272)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT----CTTCCEEECCSSCBCCCTT
T ss_pred CEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhC----CcCCCEEEccCCCccccCc
Confidence 99999999998776777788899999999999998766666665 7888899999999888764
No 14
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.80 E-value=4.6e-19 Score=143.73 Aligned_cols=139 Identities=21% Similarity=0.170 Sum_probs=120.3
Q ss_pred CCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEEE
Q 024632 70 NGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVID 149 (265)
Q Consensus 70 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 149 (265)
.+++++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 106 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA 106 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence 35799999999999966666788999999999999999965555678999999999999999976666788999999999
Q ss_pred ccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCCCCCCCC
Q 024632 150 LHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKDLYGYP 212 (265)
Q Consensus 150 Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~~~c~~~ 212 (265)
+++|++++..+..+..+++|+.|++++|.+++..+..+.. ++.++.+++++|++.|.++
T Consensus 107 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~----l~~L~~L~l~~N~~~~~~~ 165 (208)
T 2o6s_A 107 LNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDR----LTSLQYIWLHDNPWDCTCP 165 (208)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT----CTTCCEEECCSCCBCCCTT
T ss_pred cCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhcc----CCCccEEEecCCCeecCCC
Confidence 9999999766677899999999999999999665555655 7889999999999888764
No 15
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.80 E-value=2e-19 Score=152.76 Aligned_cols=141 Identities=24% Similarity=0.190 Sum_probs=73.5
Q ss_pred eecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCC
Q 024632 67 TCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLN 146 (265)
Q Consensus 67 ~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 146 (265)
+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+
T Consensus 101 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 180 (285)
T 1ozn_A 101 FHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLD 180 (285)
T ss_dssp TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred hcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccC
Confidence 33444455555555555444444445555555555555555533333344555555555555555533333455555555
Q ss_pred EEEccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCCCCCCC
Q 024632 147 VIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKDLYGY 211 (265)
Q Consensus 147 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~~~c~~ 211 (265)
+|++++|.+++..|..+..+++|+.|++++|.+++..+..+.. ++.++.+++++|++.|.+
T Consensus 181 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~----l~~L~~L~l~~N~~~c~~ 241 (285)
T 1ozn_A 181 RLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAP----LRALQYLRLNDNPWVCDC 241 (285)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTT----CTTCCEEECCSSCEECSG
T ss_pred EEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHccc----CcccCEEeccCCCccCCC
Confidence 5555555555555555555555555555555555433333443 566666677777766654
No 16
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.80 E-value=2e-19 Score=144.46 Aligned_cols=131 Identities=19% Similarity=0.208 Sum_probs=88.5
Q ss_pred EEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCC-CcccCcccceeccccccCCCCCchHhhhCCcCCEEEccC
Q 024632 74 YKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPA-DLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHD 152 (265)
Q Consensus 74 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 152 (265)
+++++++|+++ .+|..+.. ++++|++++|.+++..+. .+..+++|++|+|++|.+++..|..+..+++|++|++++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 45677777775 56655433 677777777777644333 366777777777777777766666777777777777777
Q ss_pred ccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCCCCCCC
Q 024632 153 NLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKDLYGY 211 (265)
Q Consensus 153 N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~~~c~~ 211 (265)
|++++..|..|..+++|++|++++|++++..|..+.. ++.++.+++++|++.|.+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~----l~~L~~L~L~~N~l~c~c 142 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEH----LNSLTSLNLASNPFNCNC 142 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTT----CTTCCEEECTTCCBCCSG
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhc----CCCCCEEEeCCCCccCcC
Confidence 7777666666677777777777777777666666655 666677777777766654
No 17
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.79 E-value=9.7e-19 Score=149.35 Aligned_cols=138 Identities=27% Similarity=0.191 Sum_probs=101.4
Q ss_pred cCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEE
Q 024632 69 NNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVI 148 (265)
Q Consensus 69 ~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 148 (265)
.+++|++|++++|.++ .+|..+..+++|++|++++|++++..+..|..+++|++|++++|++++..+..+..+++|+.|
T Consensus 75 ~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 153 (290)
T 1p9a_G 75 TLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL 153 (290)
T ss_dssp CCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEE
Confidence 4566667777777766 566667777778888888888775555667777888888888888876655666777788888
Q ss_pred EccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCCCCCCCC
Q 024632 149 DLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKDLYGYP 212 (265)
Q Consensus 149 ~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~~~c~~~ 212 (265)
++++|++++..+..+..+++|+.|++++|+++ .+|..+.. .+.++.+++++|++.|.|.
T Consensus 154 ~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~----~~~L~~l~L~~Np~~C~c~ 212 (290)
T 1p9a_G 154 SLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFG----SHLLPFAFLHGNPWLCNCE 212 (290)
T ss_dssp ECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTT----TCCCSEEECCSCCBCCSGG
T ss_pred ECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcc----cccCCeEEeCCCCccCcCc
Confidence 88888887444445677788888888888887 66776665 5577788889999988763
No 18
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.79 E-value=4.9e-19 Score=153.76 Aligned_cols=138 Identities=17% Similarity=0.271 Sum_probs=90.8
Q ss_pred CCCceeecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCccc---------CcccceeccccccCC
Q 024632 62 YLPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQY---------LVNLAVLNLSANRLA 132 (265)
Q Consensus 62 ~~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~---------l~~L~~L~Ls~N~l~ 132 (265)
..|..+..+++|++|++++|.++ .+|..+..+++|++|++++|++.+.+|..+.. +++|++|++++|.++
T Consensus 118 ~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~ 196 (328)
T 4fcg_A 118 ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR 196 (328)
T ss_dssp CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC
T ss_pred chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC
Confidence 46666777888888888888887 67777777888888888877776677766543 666666666666666
Q ss_pred CCCchHhhhCCcCCEEEccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCC
Q 024632 133 GEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNK 206 (265)
Q Consensus 133 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~ 206 (265)
.+|..+..+++|++|++++|+++ .+|..++.+++|+.|++++|++.+.+|..+.+ ++.|+.+++++|.
T Consensus 197 -~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~----l~~L~~L~L~~n~ 264 (328)
T 4fcg_A 197 -SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGG----RAPLKRLILKDCS 264 (328)
T ss_dssp -CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTC----CCCCCEEECTTCT
T ss_pred -cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcC----CCCCCEEECCCCC
Confidence 56666666666666666666666 34555666666666666666666566655544 4444444444443
No 19
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.78 E-value=7.8e-19 Score=141.20 Aligned_cols=131 Identities=18% Similarity=0.220 Sum_probs=110.9
Q ss_pred EEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEEEccCc
Q 024632 74 YKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDN 153 (265)
Q Consensus 74 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 153 (265)
+++++++|+++ .+|..+. ++|++|++++|.++ .+|..+..+++|++|++++|.+++..+..|..+++|++|++++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 46888899888 6776554 68999999999998 78888999999999999999999777778999999999999999
Q ss_pred cCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCCCCCCCC
Q 024632 154 LLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKDLYGYP 212 (265)
Q Consensus 154 ~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~~~c~~~ 212 (265)
++++..|..|..+++|+.|++++|.+++..+..+.. ++.++.+++++|++.|.+.
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~----l~~L~~L~L~~N~~~C~c~ 143 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFND----LSALSHLAIGANPLYCDCN 143 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTT----CTTCCEEECCSSCEECSGG
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhc----CccccEEEeCCCCeecCCc
Confidence 999777778899999999999999998554445655 7888889999999988764
No 20
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.77 E-value=1.6e-18 Score=156.32 Aligned_cols=139 Identities=20% Similarity=0.164 Sum_probs=127.8
Q ss_pred CCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEEE
Q 024632 70 NGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVID 149 (265)
Q Consensus 70 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 149 (265)
.+++++|++++|.+.+..|..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..|..+..+++|++|+
T Consensus 274 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 353 (455)
T 3v47_A 274 ASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLD 353 (455)
T ss_dssp TSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEE
T ss_pred ccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEE
Confidence 46899999999999988899999999999999999999988888999999999999999999988889999999999999
Q ss_pred ccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCCCCCCCC
Q 024632 150 LHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKDLYGYP 212 (265)
Q Consensus 150 Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~~~c~~~ 212 (265)
+++|++++..|..+..+++|+.|++++|++++..+..+.. ++.++.+++++|+..|.+|
T Consensus 354 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~----l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 354 LSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDR----LTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTT----CTTCCEEECCSSCBCCCTT
T ss_pred CCCCcccccChhhccccccccEEECCCCccccCCHhHhcc----CCcccEEEccCCCcccCCC
Confidence 9999999888999999999999999999999655555555 8889999999999999876
No 21
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.76 E-value=9.2e-18 Score=140.09 Aligned_cols=134 Identities=21% Similarity=0.200 Sum_probs=120.5
Q ss_pred CCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEEEc
Q 024632 71 GRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDL 150 (265)
Q Consensus 71 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 150 (265)
++++.|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 114 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL 114 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEc
Confidence 57899999999999888888999999999999999999877778999999999999999999777788899999999999
Q ss_pred cCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCCCC
Q 024632 151 HDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKDL 208 (265)
Q Consensus 151 s~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~~~ 208 (265)
++|++++..+..+..+++|+.|++++|++++..|..+.+ ++.|+.+++++|...
T Consensus 115 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~----l~~L~~L~L~~N~l~ 168 (251)
T 3m19_A 115 GGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDK----LTNLQTLSLSTNQLQ 168 (251)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT----CTTCCEEECCSSCCS
T ss_pred CCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCc----CcCCCEEECCCCcCC
Confidence 999999766667899999999999999999666656766 788999999999753
No 22
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.76 E-value=6.2e-19 Score=151.16 Aligned_cols=139 Identities=17% Similarity=0.206 Sum_probs=71.0
Q ss_pred cCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCC-CCCCCcccCcccceeccccccCCCCCchHhhhCCcCCE
Q 024632 69 NNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTG-SIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNV 147 (265)
Q Consensus 69 ~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 147 (265)
.+++|++|++++|.+.+..+..+..+++|++|++++|.+.+ .+|..+..+++|++|++++|.+++..|..+..+++|++
T Consensus 124 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 203 (306)
T 2z66_A 124 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 203 (306)
T ss_dssp TCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred hccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCE
Confidence 34444555555554444444444455555555555555543 24444555555555555555555444455555555555
Q ss_pred EEccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCC-CCCCCCCCCCCCCCCC
Q 024632 148 IDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLP-KFNASSFEGNKDLYGY 211 (265)
Q Consensus 148 L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~-~l~~~~~~~N~~~c~~ 211 (265)
|++++|++++..+..+..+++|+.|++++|++++..|..+.. ++ .++.+++++|++.|.+
T Consensus 204 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~----~~~~L~~L~L~~N~~~~~c 264 (306)
T 2z66_A 204 LNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH----FPSSLAFLNLTQNDFACTC 264 (306)
T ss_dssp EECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCC----CCTTCCEEECTTCCEECSG
T ss_pred EECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHh----hhccCCEEEccCCCeeccc
Confidence 555555555444444555555555555555555555544443 32 4555555566555543
No 23
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.76 E-value=7.6e-19 Score=154.43 Aligned_cols=150 Identities=25% Similarity=0.173 Sum_probs=106.0
Q ss_pred CCCCCCCCceee-cCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCC
Q 024632 57 NGFTSYLPGATC-NNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEI 135 (265)
Q Consensus 57 ~~~~~~~~~~~~-~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 135 (265)
|.++...++.+. .+++|++|+|++|.+++..+..|..+++|++|+|++|++++..+..|..+++|++|+|++|.+++..
T Consensus 49 N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~ 128 (361)
T 2xot_A 49 NNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVD 128 (361)
T ss_dssp SCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred CCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEEC
Confidence 344444444454 6778888888888887666667778888888888888887555556777888888888888887666
Q ss_pred chHhhhCCcCCEEEccCccCcccCChh-c---cCCCCCCEEEcccCCCCCCCChhhhccCCCCCC--CCCCCCCCCCCCC
Q 024632 136 PPQLTLCAYLNVIDLHDNLLTGQIPQQ-L---GLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPK--FNASSFEGNKDLY 209 (265)
Q Consensus 136 p~~~~~l~~L~~L~Ls~N~l~~~~p~~-~---~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~--l~~~~~~~N~~~c 209 (265)
|..+..+++|+.|+|++|++++ +|.. + ..+++|+.|++++|++++..+..+.. ++. +..+++++|++.|
T Consensus 129 ~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~----l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 129 RNAFEDMAQLQKLYLSQNQISR-FPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQK----LPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp TTTTTTCTTCCEEECCSSCCCS-CCGGGTC----CTTCCEEECCSSCCCCCCHHHHHH----SCHHHHTTEECCSSCEEC
T ss_pred HHHhCCcccCCEEECCCCcCCe-eCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhh----ccHhhcceEEecCCCccC
Confidence 7777888888888888888874 4443 3 45778888888888887544445555 444 3567888888888
Q ss_pred CC
Q 024632 210 GY 211 (265)
Q Consensus 210 ~~ 211 (265)
.|
T Consensus 204 ~C 205 (361)
T 2xot_A 204 DC 205 (361)
T ss_dssp CH
T ss_pred Cc
Confidence 75
No 24
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.75 E-value=9.7e-19 Score=163.21 Aligned_cols=144 Identities=17% Similarity=0.160 Sum_probs=124.2
Q ss_pred ceeecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCC-CCCCcccCcccceeccccccCCCCCchHhhhCC
Q 024632 65 GATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGS-IPADLQYLVNLAVLNLSANRLAGEIPPQLTLCA 143 (265)
Q Consensus 65 ~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 143 (265)
..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+++. +|..+..+++|++|++++|.+++..|..+..++
T Consensus 418 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 497 (606)
T 3vq2_A 418 SAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLH 497 (606)
T ss_dssp TTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred hhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccc
Confidence 4556778888899998888887888888899999999999988863 688888899999999999999888888889999
Q ss_pred cCCEEEccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCC-CCCCCCCCCCCCCCCCCC
Q 024632 144 YLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLP-KFNASSFEGNKDLYGYPL 213 (265)
Q Consensus 144 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~-~l~~~~~~~N~~~c~~~~ 213 (265)
+|++|++++|++++..|..+..+++|+.|++++|+++ .+|..+.. ++ .++.+++++|++.|+++.
T Consensus 498 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~----l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 498 RLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQH----FPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp TCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGG----SCTTCCEEECCSCCCCCSSTT
T ss_pred cCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhh----hcccCcEEEccCCCcccCCcc
Confidence 9999999999999888888999999999999999998 67777766 55 488899999999998865
No 25
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.75 E-value=2.9e-17 Score=138.49 Aligned_cols=148 Identities=22% Similarity=0.203 Sum_probs=119.9
Q ss_pred CCCCCCCCceeecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCc
Q 024632 57 NGFTSYLPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIP 136 (265)
Q Consensus 57 ~~~~~~~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 136 (265)
+.+....+..+..+++|++|++++|.++...+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+
T Consensus 47 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 126 (270)
T 2o6q_A 47 NKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPP 126 (270)
T ss_dssp SCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCT
T ss_pred CCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCH
Confidence 33444344567778999999999999985545556889999999999999986555667889999999999999997777
Q ss_pred hHhhhCCcCCEEEccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCCCC
Q 024632 137 PQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKDL 208 (265)
Q Consensus 137 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~~~ 208 (265)
..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+.+ ++.|+.+++++|...
T Consensus 127 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~----l~~L~~L~L~~N~l~ 194 (270)
T 2o6q_A 127 RVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDK----LTELKTLKLDNNQLK 194 (270)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT----CTTCCEEECCSSCCS
T ss_pred HHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhcc----CCCcCEEECCCCcCC
Confidence 77889999999999999999665666888999999999999998665555655 788888999998643
No 26
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.75 E-value=8e-18 Score=142.86 Aligned_cols=136 Identities=18% Similarity=0.160 Sum_probs=69.3
Q ss_pred eecCCCeEEEEeeCCC-ccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcC
Q 024632 67 TCNNGRIYKLSLTNLS-LQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYL 145 (265)
Q Consensus 67 ~~~~~~l~~L~L~~n~-l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 145 (265)
+..+++|++|++++|. +....|..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|
T Consensus 76 ~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 155 (285)
T 1ozn_A 76 FTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNL 155 (285)
T ss_dssp TTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred cCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCc
Confidence 3344445555555554 443334444555555555555555554444445555555555555555554333344555555
Q ss_pred CEEEccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCC
Q 024632 146 NVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNK 206 (265)
Q Consensus 146 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~ 206 (265)
++|++++|++++..+..+..+++|+.|++++|.+++..|..+.+ ++.++.+++++|.
T Consensus 156 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~----l~~L~~L~l~~n~ 212 (285)
T 1ozn_A 156 THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRD----LGRLMTLYLFANN 212 (285)
T ss_dssp CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT----CTTCCEEECCSSC
T ss_pred cEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccC----cccccEeeCCCCc
Confidence 55555555555333334555555555555555555444554444 5556666666664
No 27
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.75 E-value=7e-19 Score=165.63 Aligned_cols=132 Identities=19% Similarity=0.330 Sum_probs=121.9
Q ss_pred CCCCCCCCCCceeecCCCeEEEEeeCCCcccc-----------------CCccCc--CCCCCCEEECcCCCCCCCCCCCc
Q 024632 55 ACNGFTSYLPGATCNNGRIYKLSLTNLSLQGS-----------------ISPYLS--NCTNLQSLDLSSNALTGSIPADL 115 (265)
Q Consensus 55 ~c~~~~~~~~~~~~~~~~l~~L~L~~n~l~~~-----------------~p~~l~--~l~~L~~L~Ls~N~l~~~~p~~l 115 (265)
.+|.+++ +|..+.++++|++|+|++|.+++. +|..++ ++++|++|++++|.+.+.+|..+
T Consensus 191 ~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l 269 (636)
T 4eco_A 191 LSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL 269 (636)
T ss_dssp CSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTT
T ss_pred ccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHH
Confidence 4677777 888899999999999999999985 999999 99999999999999999999999
Q ss_pred ccCcccceecccccc-CCC-CCchHhhhC------CcCCEEEccCccCcccCCh--hccCCCCCCEEEcccCCCCCCCCh
Q 024632 116 QYLVNLAVLNLSANR-LAG-EIPPQLTLC------AYLNVIDLHDNLLTGQIPQ--QLGLLVRLSAFDVSNNKLSGPIPA 185 (265)
Q Consensus 116 ~~l~~L~~L~Ls~N~-l~~-~~p~~~~~l------~~L~~L~Ls~N~l~~~~p~--~~~~l~~L~~L~l~~N~l~g~~p~ 185 (265)
.++++|++|++++|. ++| .+|..++.+ ++|++|++++|+++ .+|. .++.+++|+.|++++|.++|.+|
T Consensus 270 ~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip- 347 (636)
T 4eco_A 270 KALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP- 347 (636)
T ss_dssp TTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-
T ss_pred hcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-
Confidence 999999999999998 998 899999887 99999999999999 8998 89999999999999999998888
Q ss_pred hhhc
Q 024632 186 SLGN 189 (265)
Q Consensus 186 ~~~~ 189 (265)
.+.+
T Consensus 348 ~~~~ 351 (636)
T 4eco_A 348 AFGS 351 (636)
T ss_dssp CCEE
T ss_pred hhCC
Confidence 6554
No 28
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.74 E-value=7.4e-18 Score=129.43 Aligned_cols=127 Identities=23% Similarity=0.263 Sum_probs=111.3
Q ss_pred CCeEEEEeeCCCcc-ccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEEE
Q 024632 71 GRIYKLSLTNLSLQ-GSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVID 149 (265)
Q Consensus 71 ~~l~~L~L~~n~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 149 (265)
++++.|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 67899999999998 78899899999999999999999955 6789999999999999999977899888999999999
Q ss_pred ccCccCccc-CChhccCCCCCCEEEcccCCCCCCCC---hhhhccCCCCCCCCCCCCC
Q 024632 150 LHDNLLTGQ-IPQQLGLLVRLSAFDVSNNKLSGPIP---ASLGNRSGNLPKFNASSFE 203 (265)
Q Consensus 150 Ls~N~l~~~-~p~~~~~l~~L~~L~l~~N~l~g~~p---~~~~~~~~~l~~l~~~~~~ 203 (265)
+++|.+++. .|..+..+++|+.|++++|++++..+ ..+.. ++.++.++++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~----l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKL----LPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHH----CTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHH----CCCcccccCC
Confidence 999999963 34789999999999999999996655 45666 7777777654
No 29
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.74 E-value=9.6e-18 Score=131.39 Aligned_cols=132 Identities=23% Similarity=0.243 Sum_probs=114.5
Q ss_pred CCCeEEEEeeCCCcc-ccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEE
Q 024632 70 NGRIYKLSLTNLSLQ-GSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVI 148 (265)
Q Consensus 70 ~~~l~~L~L~~n~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 148 (265)
.+++++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 367899999999998 78888889999999999999999954 778899999999999999997788888889999999
Q ss_pred EccCccCcccC-ChhccCCCCCCEEEcccCCCCCCCC---hhhhccCCCCCCCCCCCCCCCCC
Q 024632 149 DLHDNLLTGQI-PQQLGLLVRLSAFDVSNNKLSGPIP---ASLGNRSGNLPKFNASSFEGNKD 207 (265)
Q Consensus 149 ~Ls~N~l~~~~-p~~~~~l~~L~~L~l~~N~l~g~~p---~~~~~~~~~l~~l~~~~~~~N~~ 207 (265)
++++|.+++.. +..+..+++|+.|++++|++++..+ ..+.. ++.++.+++++|..
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~----l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKL----LPQLTYLDGYDRED 159 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTT----CSSCCEETTEETTS
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHh----CccCcEecCCCCCh
Confidence 99999999532 2778999999999999999995544 35555 88899999998874
No 30
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.74 E-value=3.3e-18 Score=159.55 Aligned_cols=144 Identities=16% Similarity=0.177 Sum_probs=129.7
Q ss_pred ceeecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCC-CCCCCCcccCcccceeccccccCCCCCchHhhhCC
Q 024632 65 GATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALT-GSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCA 143 (265)
Q Consensus 65 ~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 143 (265)
..+..+.+++.++++.|.+.+..+..+..++.++.|++++|.+. +..|..+..+++|++|+|++|++++..|..|.+++
T Consensus 439 ~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~ 518 (635)
T 4g8a_A 439 SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS 518 (635)
T ss_dssp CTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred cccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCC
Confidence 34556788999999999999888888999999999999999754 45678899999999999999999988899999999
Q ss_pred cCCEEEccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCC-CCCCCCCCCCCCCCCCCC
Q 024632 144 YLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNL-PKFNASSFEGNKDLYGYP 212 (265)
Q Consensus 144 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l-~~l~~~~~~~N~~~c~~~ 212 (265)
+|++|+|++|++++..|..+..+++|+.|++++|++++..|..+.. + +.++.+++++||+.|+|.
T Consensus 519 ~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~----l~~~L~~L~L~~Np~~C~C~ 584 (635)
T 4g8a_A 519 SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH----FPSSLAFLNLTQNDFACTCE 584 (635)
T ss_dssp TCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTC----CCTTCCEEECTTCCBCCSGG
T ss_pred CCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHh----hhCcCCEEEeeCCCCcccCC
Confidence 9999999999999888888999999999999999999998988876 4 468889999999999875
No 31
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.74 E-value=2.1e-17 Score=132.53 Aligned_cols=114 Identities=20% Similarity=0.252 Sum_probs=105.3
Q ss_pred CeEEEEeeCCCccccCCc-cCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEEEc
Q 024632 72 RIYKLSLTNLSLQGSISP-YLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDL 150 (265)
Q Consensus 72 ~l~~L~L~~n~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 150 (265)
++++|++++|.+++..+. .+..+++|++|++++|.+++..|..+..+++|++|+|++|.+++..|..+..+++|++|++
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 889999999999965554 4889999999999999999888999999999999999999999888888999999999999
Q ss_pred cCccCcccCChhccCCCCCCEEEcccCCCCCCCCh
Q 024632 151 HDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPA 185 (265)
Q Consensus 151 s~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~ 185 (265)
++|++++..|..+..+++|++|++++|++++..+.
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l 144 (192)
T 1w8a_A 110 YDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHL 144 (192)
T ss_dssp CSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGG
T ss_pred CCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcc
Confidence 99999999999999999999999999999987663
No 32
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.73 E-value=8.4e-18 Score=151.42 Aligned_cols=151 Identities=21% Similarity=0.190 Sum_probs=107.6
Q ss_pred CCCCCCCCceeecCCCeEEEEeeCCCccccCCcc-------------------------CcCCCCCCEEECcCCCCCCCC
Q 024632 57 NGFTSYLPGATCNNGRIYKLSLTNLSLQGSISPY-------------------------LSNCTNLQSLDLSSNALTGSI 111 (265)
Q Consensus 57 ~~~~~~~~~~~~~~~~l~~L~L~~n~l~~~~p~~-------------------------l~~l~~L~~L~Ls~N~l~~~~ 111 (265)
|.+....++.+..+++|++|++++|.++...+.. +.++++|++|++++|.++ .+
T Consensus 122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~ 200 (440)
T 3zyj_A 122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EI 200 (440)
T ss_dssp SCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SC
T ss_pred CcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-cc
Confidence 3444444456777888888888888877443333 444555556666666665 44
Q ss_pred CCCcccCcccceeccccccCCCCCchHhhhCCcCCEEEccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccC
Q 024632 112 PADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRS 191 (265)
Q Consensus 112 p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~ 191 (265)
| .+..+++|+.|++++|.+++..|..+..+++|+.|++++|++++..|..|..+++|+.|++++|++++..+..+..
T Consensus 201 ~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~-- 277 (440)
T 3zyj_A 201 P-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTP-- 277 (440)
T ss_dssp C-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSS--
T ss_pred c-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhcc--
Confidence 4 3556677777777777777666777777888888888888888777777888888888888888888555555554
Q ss_pred CCCCCCCCCCCCCCCCCCCCCC
Q 024632 192 GNLPKFNASSFEGNKDLYGYPL 213 (265)
Q Consensus 192 ~~l~~l~~~~~~~N~~~c~~~~ 213 (265)
++.++.+++++|++.|+|.+
T Consensus 278 --l~~L~~L~L~~Np~~CdC~l 297 (440)
T 3zyj_A 278 --LHHLERIHLHHNPWNCNCDI 297 (440)
T ss_dssp --CTTCCEEECCSSCEECSSTT
T ss_pred --ccCCCEEEcCCCCccCCCCc
Confidence 78888999999999998743
No 33
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.73 E-value=2.4e-17 Score=130.27 Aligned_cols=129 Identities=19% Similarity=0.187 Sum_probs=74.1
Q ss_pred EEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEEEccCcc
Q 024632 75 KLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNL 154 (265)
Q Consensus 75 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 154 (265)
.+++++++++ .+|..+ .++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|+
T Consensus 11 ~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 11 EIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp EEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence 4555555555 344333 2466666666666664444445666666666666666664444445666666666666666
Q ss_pred CcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCCCCCC
Q 024632 155 LTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKDLYG 210 (265)
Q Consensus 155 l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~~~c~ 210 (265)
+++..+..+..+++|+.|++++|.+++..+..+.. ++.++.+++++|++.|.
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~----l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 88 LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDR----LTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT----CTTCCEEECCSSCBCCC
T ss_pred ccccCHHHhhCCcccCEEECcCCcceEeCHHHhcC----CcccCEEEecCCCeecc
Confidence 66544445566666666666666666333322333 55566666666665554
No 34
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.73 E-value=1.2e-17 Score=136.92 Aligned_cols=120 Identities=18% Similarity=0.184 Sum_probs=111.1
Q ss_pred ceeecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCc
Q 024632 65 GATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAY 144 (265)
Q Consensus 65 ~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 144 (265)
+.+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|+|++|.+++..|..+..+++
T Consensus 51 ~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 130 (220)
T 2v70_A 51 GIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSS 130 (220)
T ss_dssp CCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTT
T ss_pred hhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCcc
Confidence 45678999999999999999777778999999999999999999777777999999999999999999888999999999
Q ss_pred CCEEEccCccCcccCChhccCCCCCCEEEcccCCCCCCCC
Q 024632 145 LNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIP 184 (265)
Q Consensus 145 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p 184 (265)
|++|++++|++++..|..+..+++|+.|++++|++++..+
T Consensus 131 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 131 VRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp CSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred CCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 9999999999998889999999999999999999987655
No 35
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.73 E-value=1.1e-17 Score=141.35 Aligned_cols=150 Identities=20% Similarity=0.179 Sum_probs=106.6
Q ss_pred CCCCCCceeecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCC-Cch
Q 024632 59 FTSYLPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGE-IPP 137 (265)
Q Consensus 59 ~~~~~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~p~ 137 (265)
+....++.+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++. +|.
T Consensus 64 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~ 143 (276)
T 2z62_A 64 IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE 143 (276)
T ss_dssp CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCG
T ss_pred CCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCch
Confidence 3333344566778888888888888876667788888888888888888865555677888888888888888753 577
Q ss_pred HhhhCCcCCEEEccCccCcccCChhccCCC---------------------------CCCEEEcccCCCCCCCChhhhcc
Q 024632 138 QLTLCAYLNVIDLHDNLLTGQIPQQLGLLV---------------------------RLSAFDVSNNKLSGPIPASLGNR 190 (265)
Q Consensus 138 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~---------------------------~L~~L~l~~N~l~g~~p~~~~~~ 190 (265)
.+..+++|++|++++|++++..+..+..++ +|+.|++++|++++..+..+.+
T Consensus 144 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~- 222 (276)
T 2z62_A 144 YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDR- 222 (276)
T ss_dssp GGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTT-
T ss_pred hhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcc-
Confidence 888888888888888887765444443332 4556666666666433333333
Q ss_pred CCCCCCCCCCCCCCCCCCCCCC
Q 024632 191 SGNLPKFNASSFEGNKDLYGYP 212 (265)
Q Consensus 191 ~~~l~~l~~~~~~~N~~~c~~~ 212 (265)
++.++.+++++|++.|.++
T Consensus 223 ---l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 223 ---LTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp ---CCSCCEEECCSSCBCCCTT
T ss_pred ---cccccEEEccCCcccccCC
Confidence 7778888888998888764
No 36
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.73 E-value=1.4e-17 Score=150.42 Aligned_cols=151 Identities=19% Similarity=0.154 Sum_probs=111.0
Q ss_pred CCCCCCCCceeecCCCeEEEEeeCCCccccCCcc-------------------------CcCCCCCCEEECcCCCCCCCC
Q 024632 57 NGFTSYLPGATCNNGRIYKLSLTNLSLQGSISPY-------------------------LSNCTNLQSLDLSSNALTGSI 111 (265)
Q Consensus 57 ~~~~~~~~~~~~~~~~l~~L~L~~n~l~~~~p~~-------------------------l~~l~~L~~L~Ls~N~l~~~~ 111 (265)
|.+....++.+..+++|++|+|++|.++...+.. +..+++|++|++++|.++ .+
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~ 211 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DM 211 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS-SC
T ss_pred CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc-cc
Confidence 3344444556677888999999998887443333 445566666666666666 34
Q ss_pred CCCcccCcccceeccccccCCCCCchHhhhCCcCCEEEccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccC
Q 024632 112 PADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRS 191 (265)
Q Consensus 112 p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~ 191 (265)
| .+..+++|+.|++++|.+++..|..+..+++|+.|++++|++++..|..|..+++|+.|++++|++++..+..+..
T Consensus 212 ~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~-- 288 (452)
T 3zyi_A 212 P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTP-- 288 (452)
T ss_dssp C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTT--
T ss_pred c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhcc--
Confidence 4 3566777788888888887777778888888888888888888777788888888888888888888555555544
Q ss_pred CCCCCCCCCCCCCCCCCCCCCC
Q 024632 192 GNLPKFNASSFEGNKDLYGYPL 213 (265)
Q Consensus 192 ~~l~~l~~~~~~~N~~~c~~~~ 213 (265)
++.++.+++++|++.|.|.+
T Consensus 289 --l~~L~~L~L~~Np~~CdC~~ 308 (452)
T 3zyi_A 289 --LRYLVELHLHHNPWNCDCDI 308 (452)
T ss_dssp --CTTCCEEECCSSCEECSTTT
T ss_pred --ccCCCEEEccCCCcCCCCCc
Confidence 77888899999999998753
No 37
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.72 E-value=7.1e-17 Score=136.29 Aligned_cols=136 Identities=23% Similarity=0.186 Sum_probs=120.3
Q ss_pred eecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCC
Q 024632 67 TCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLN 146 (265)
Q Consensus 67 ~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 146 (265)
+..+++|++|++++|.+++ + +.+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+
T Consensus 59 l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 136 (272)
T 3rfs_A 59 IQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLT 136 (272)
T ss_dssp GGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred cccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCC
Confidence 5578999999999999985 3 4789999999999999999977777789999999999999999977777789999999
Q ss_pred EEEccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCCCC
Q 024632 147 VIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKDL 208 (265)
Q Consensus 147 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~~~ 208 (265)
+|++++|++++..|..+..+++|+.|++++|++++..|..+.+ ++.|+.+++++|...
T Consensus 137 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~----l~~L~~L~L~~N~l~ 194 (272)
T 3rfs_A 137 YLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDK----LTQLKDLRLYQNQLK 194 (272)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT----CTTCCEEECCSSCCS
T ss_pred EEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcC----CccCCEEECCCCcCC
Confidence 9999999999777777899999999999999999766666665 788999999999744
No 38
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.72 E-value=2.5e-17 Score=140.63 Aligned_cols=145 Identities=26% Similarity=0.218 Sum_probs=119.6
Q ss_pred CCCCCCCCceeecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCc
Q 024632 57 NGFTSYLPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIP 136 (265)
Q Consensus 57 ~~~~~~~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 136 (265)
|.+....++.+..+++|++|++++|.+++. +. ...+++|++|++++|.++ .+|..+..+++|++|++++|++++..|
T Consensus 41 N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~ 117 (290)
T 1p9a_G 41 NLLYTFSLATLMPYTRLTQLNLDRAELTKL-QV-DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPL 117 (290)
T ss_dssp SCCSEEEGGGGTTCTTCCEEECTTSCCCEE-EC-CSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCS
T ss_pred CcCCccCHHHhhcCCCCCEEECCCCccCcc-cC-CCCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCH
Confidence 334443455667788999999999999853 33 278899999999999998 788888999999999999999997777
Q ss_pred hHhhhCCcCCEEEccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCCCC
Q 024632 137 PQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKDL 208 (265)
Q Consensus 137 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~~~ 208 (265)
..+..+++|++|++++|++++..+..|..+++|+.|++++|++++..+..+.. ++.|+.+++++|...
T Consensus 118 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~----l~~L~~L~L~~N~l~ 185 (290)
T 1p9a_G 118 GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNG----LENLDTLLLQENSLY 185 (290)
T ss_dssp STTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTT----CTTCCEEECCSSCCC
T ss_pred HHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcC----cCCCCEEECCCCcCC
Confidence 88999999999999999999776777889999999999999999544444444 788889999999754
No 39
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.72 E-value=1.9e-17 Score=154.39 Aligned_cols=133 Identities=21% Similarity=0.179 Sum_probs=115.8
Q ss_pred CCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEEEc
Q 024632 71 GRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDL 150 (265)
Q Consensus 71 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 150 (265)
.++++|+|++|.|++..+..|.++++|++|+|++|++++..|..|..+++|++|+|++|++++..+..|.++++|++|++
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 47899999999999766778999999999999999999666677999999999999999999766778899999999999
Q ss_pred cCccCcccCChhccCCCCCCEEEcccCCCCC-CCChhhhccCCCCCCCCCCCCCCCCC
Q 024632 151 HDNLLTGQIPQQLGLLVRLSAFDVSNNKLSG-PIPASLGNRSGNLPKFNASSFEGNKD 207 (265)
Q Consensus 151 s~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g-~~p~~~~~~~~~l~~l~~~~~~~N~~ 207 (265)
++|++++..+..|+.+++|+.|++++|.+++ .+|..+.. ++.++.+++++|..
T Consensus 132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~----l~~L~~L~L~~N~l 185 (635)
T 4g8a_A 132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN----LTNLEHLDLSSNKI 185 (635)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGG----CTTCCEEECCSSCC
T ss_pred CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhcc----chhhhhhcccCccc
Confidence 9999997666678999999999999999975 46777776 77788888888864
No 40
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.72 E-value=3.1e-17 Score=134.39 Aligned_cols=126 Identities=21% Similarity=0.211 Sum_probs=111.5
Q ss_pred CCCCCCCCceeecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCc
Q 024632 57 NGFTSYLPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIP 136 (265)
Q Consensus 57 ~~~~~~~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 136 (265)
|.+....++.+..+++|++|+|++|.+++..|..|.++++|++|+|++|.++...+..|..+++|++|+|++|.+++..|
T Consensus 42 n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~ 121 (220)
T 2v9t_B 42 NTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRV 121 (220)
T ss_dssp SCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCH
Confidence 44444445577788999999999999998889999999999999999999995444557889999999999999998888
Q ss_pred hHhhhCCcCCEEEccCccCcccCChhccCCCCCCEEEcccCCCCCC
Q 024632 137 PQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGP 182 (265)
Q Consensus 137 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ 182 (265)
..+..+++|++|++++|++++..+..+..+++|+.|++++|++...
T Consensus 122 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 167 (220)
T 2v9t_B 122 DAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICD 167 (220)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred HHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCC
Confidence 9999999999999999999977777899999999999999998754
No 41
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.71 E-value=9.3e-18 Score=156.55 Aligned_cols=143 Identities=23% Similarity=0.164 Sum_probs=72.3
Q ss_pred CceeecCCCeEEEEeeCCCccccCCcc-CcCCCCCCEEECcCCCCCCCCCCCcccCcccceecccccc------------
Q 024632 64 PGATCNNGRIYKLSLTNLSLQGSISPY-LSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANR------------ 130 (265)
Q Consensus 64 ~~~~~~~~~l~~L~L~~n~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~------------ 130 (265)
+..+..+++|++|++++|.+.+..+.. +..+++|++|++++|.+++..|..+..+++|++|++++|.
T Consensus 393 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 472 (606)
T 3t6q_A 393 TEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSL 472 (606)
T ss_dssp TTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGG
T ss_pred HHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhh
Confidence 333444455555555555554433322 4445555555555555554444444445555555555554
Q ss_pred ---------------CCCCCchHhhhCCcCCEEEccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCC
Q 024632 131 ---------------LAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLP 195 (265)
Q Consensus 131 ---------------l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~ 195 (265)
+++..|..+..+++|++|++++|++++..|..+..+++| .|++++|++++..|..+.. ++
T Consensus 473 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~----l~ 547 (606)
T 3t6q_A 473 QTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPI----LS 547 (606)
T ss_dssp GGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHH----HH
T ss_pred ccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhccc----CC
Confidence 444444444444555555555555544444445555555 5555555555444444444 45
Q ss_pred CCCCCCCCCCCCCCCC
Q 024632 196 KFNASSFEGNKDLYGY 211 (265)
Q Consensus 196 ~l~~~~~~~N~~~c~~ 211 (265)
.++.+++++|++.|.|
T Consensus 548 ~L~~L~l~~N~~~c~c 563 (606)
T 3t6q_A 548 QQRTINLRQNPLDCTC 563 (606)
T ss_dssp TSSEEECTTCCEECSG
T ss_pred CCCEEeCCCCCccccC
Confidence 5666677777766654
No 42
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.71 E-value=1.7e-17 Score=153.37 Aligned_cols=143 Identities=18% Similarity=0.192 Sum_probs=109.6
Q ss_pred eecCCCeEEEEeeCCCccccCC-ccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCC-CCCchHhhhCCc
Q 024632 67 TCNNGRIYKLSLTNLSLQGSIS-PYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLA-GEIPPQLTLCAY 144 (265)
Q Consensus 67 ~~~~~~l~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~ 144 (265)
+..+++|++|++++|.+.+..| ..+..+++|++|++++|.+.+..|..+..+++|++|++++|.++ +.+|..+..+++
T Consensus 392 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~ 471 (570)
T 2z63_A 392 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN 471 (570)
T ss_dssp EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT
T ss_pred ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccC
Confidence 4455666677777766665444 35677788888888888887777777778888888888888876 467777888888
Q ss_pred CCEEEccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCCCCCCCCC
Q 024632 145 LNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKDLYGYPL 213 (265)
Q Consensus 145 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~~~c~~~~ 213 (265)
|++|++++|++++..|..+..+++|+.|++++|++++..|..+.+ ++.++.+++++|++.|.++.
T Consensus 472 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~----l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 472 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDR----LTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTT----CTTCCEEECCSSCBCCCTTT
T ss_pred CCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhc----ccCCcEEEecCCcccCCCcc
Confidence 888888888888777888888888888888888888766666655 77888888999988887653
No 43
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.70 E-value=4.3e-17 Score=154.09 Aligned_cols=147 Identities=20% Similarity=0.153 Sum_probs=119.6
Q ss_pred CCceeecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCC----C----CCcccCcccceeccccccCCCC
Q 024632 63 LPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSI----P----ADLQYLVNLAVLNLSANRLAGE 134 (265)
Q Consensus 63 ~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~----p----~~l~~l~~L~~L~Ls~N~l~~~ 134 (265)
.|..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++.. | ..+..+++|++|++++|.++..
T Consensus 472 ~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i 551 (680)
T 1ziw_A 472 SPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEI 551 (680)
T ss_dssp SSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCC
T ss_pred CCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCC
Confidence 4555667788999999999988766667888999999999999887431 1 2367889999999999999844
Q ss_pred CchHhhhCCcCCEEEccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhh-ccCCCCCCCCCCCCCCCCCCCCCCC
Q 024632 135 IPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLG-NRSGNLPKFNASSFEGNKDLYGYPL 213 (265)
Q Consensus 135 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~-~~~~~l~~l~~~~~~~N~~~c~~~~ 213 (265)
.+..+..+++|++|++++|++++..+..|..+++|+.|++++|++++..|..+. . ++.++.+++++||+.|+|+.
T Consensus 552 ~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~----~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 552 PVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPA----FRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHH----HTTCSEEECTTCCCCBCCCC
T ss_pred CHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhccc----ccccCEEEccCCCcccCCcc
Confidence 445688999999999999999966666678899999999999999977776665 4 67888999999999999874
No 44
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.70 E-value=2.3e-17 Score=152.89 Aligned_cols=148 Identities=26% Similarity=0.365 Sum_probs=115.3
Q ss_pred CCCCCCCCceeecCCCeEEEEeeCCCccc--cCCccCcCCCCCCEEECcCCCCCCCCCCC-cccCcccceeccccccCCC
Q 024632 57 NGFTSYLPGATCNNGRIYKLSLTNLSLQG--SISPYLSNCTNLQSLDLSSNALTGSIPAD-LQYLVNLAVLNLSANRLAG 133 (265)
Q Consensus 57 ~~~~~~~~~~~~~~~~l~~L~L~~n~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~ 133 (265)
|.+.+..|..+..+++|++|++++|.+++ .+|..+..+++|++|++++|.+++.+|.. +..+++|++|++++|.+++
T Consensus 363 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~ 442 (562)
T 3a79_B 363 NVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTG 442 (562)
T ss_dssp SCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCG
T ss_pred CccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCc
Confidence 34444456666778888888888888875 23456788888888888888888656654 7778888888888888876
Q ss_pred CCchHhhhCCcCCEEEccCccCcccCChhccCCCCCCEEEcccCCCCCCCChh-hhccCCCCCCCCCCCCCCCCCCCCCC
Q 024632 134 EIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPAS-LGNRSGNLPKFNASSFEGNKDLYGYP 212 (265)
Q Consensus 134 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~-~~~~~~~l~~l~~~~~~~N~~~c~~~ 212 (265)
..|..+. ++|++|++++|+++ .+|..+..+++|+.|++++|+++ .+|.. +.. ++.++.+++++|++.|.|+
T Consensus 443 ~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~----l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 443 SVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDR----LTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp GGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTT----CTTCCCEECCSCCBCCCHH
T ss_pred chhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhc----CCCCCEEEecCCCcCCCcc
Confidence 6655443 68999999999998 78887789999999999999998 56765 554 7888899999999988753
No 45
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.70 E-value=1.3e-16 Score=129.17 Aligned_cols=128 Identities=22% Similarity=0.168 Sum_probs=109.1
Q ss_pred CCCCCCCCceeecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCc
Q 024632 57 NGFTSYLPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIP 136 (265)
Q Consensus 57 ~~~~~~~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 136 (265)
|.+....++.+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+
T Consensus 38 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 117 (208)
T 2o6s_A 38 NSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPD 117 (208)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCH
Confidence 34444344556778999999999999996656667899999999999999996656668899999999999999997767
Q ss_pred hHhhhCCcCCEEEccCccCcccCChhccCCCCCCEEEcccCCCCCCCC
Q 024632 137 PQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIP 184 (265)
Q Consensus 137 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p 184 (265)
..+..+++|++|++++|++++..+..+..+++|+.|++++|.+.+..|
T Consensus 118 ~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 165 (208)
T 2o6s_A 118 GVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 165 (208)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCTT
T ss_pred hHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCCC
Confidence 678999999999999999997666668999999999999999887665
No 46
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.70 E-value=1.2e-16 Score=131.73 Aligned_cols=127 Identities=24% Similarity=0.206 Sum_probs=110.9
Q ss_pred CCCCCCCCceeecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCc
Q 024632 57 NGFTSYLPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIP 136 (265)
Q Consensus 57 ~~~~~~~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 136 (265)
|.+.+..++.+..+++|++|+|++|.++...+..+..+++|++|+|++|++++..+..+..+++|++|++++|.++ .+|
T Consensus 50 n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp 128 (229)
T 3e6j_A 50 NQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELP 128 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCC
T ss_pred CccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccC
Confidence 4445545666778899999999999998555566899999999999999999666666889999999999999999 789
Q ss_pred hHhhhCCcCCEEEccCccCcccCChhccCCCCCCEEEcccCCCCCCCC
Q 024632 137 PQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIP 184 (265)
Q Consensus 137 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p 184 (265)
..+..+++|++|++++|++++..+..+..+++|+.|++++|++.+..+
T Consensus 129 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 129 RGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp TTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred cccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 999999999999999999996666778999999999999999987654
No 47
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.70 E-value=2.8e-17 Score=138.79 Aligned_cols=132 Identities=17% Similarity=0.158 Sum_probs=110.8
Q ss_pred CCCCCCCceeecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCch
Q 024632 58 GFTSYLPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPP 137 (265)
Q Consensus 58 ~~~~~~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~ 137 (265)
.+....+..+.++++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+.
T Consensus 39 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 118 (276)
T 2z62_A 39 PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENF 118 (276)
T ss_dssp CCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTC
T ss_pred cccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCch
Confidence 34433344566788999999999999876677889999999999999999977777899999999999999999876666
Q ss_pred HhhhCCcCCEEEccCccCcc-cCChhccCCCCCCEEEcccCCCCCCCChhhhc
Q 024632 138 QLTLCAYLNVIDLHDNLLTG-QIPQQLGLLVRLSAFDVSNNKLSGPIPASLGN 189 (265)
Q Consensus 138 ~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~ 189 (265)
.+..+++|++|++++|.+++ .+|..+..+++|+.|++++|++++..+..+..
T Consensus 119 ~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 171 (276)
T 2z62_A 119 PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV 171 (276)
T ss_dssp CCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHH
T ss_pred hcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhh
Confidence 78899999999999999986 36889999999999999999998766665544
No 48
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.70 E-value=1.8e-17 Score=152.02 Aligned_cols=145 Identities=24% Similarity=0.293 Sum_probs=91.9
Q ss_pred CCCCCCceeecCCCeEEEEeeCCCccc--cCCccCcCCCCCCEEECcCCCCCCCCCCC-cccCcccceeccccccCCCCC
Q 024632 59 FTSYLPGATCNNGRIYKLSLTNLSLQG--SISPYLSNCTNLQSLDLSSNALTGSIPAD-LQYLVNLAVLNLSANRLAGEI 135 (265)
Q Consensus 59 ~~~~~~~~~~~~~~l~~L~L~~n~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~~~ 135 (265)
+.+..|..+..+++|++|++++|.+++ .+|..+..+++|++|++++|.+++.+|.. +..+++|++|++++|.+++..
T Consensus 336 l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~ 415 (520)
T 2z7x_B 336 LTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTI 415 (520)
T ss_dssp CCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGG
T ss_pred cChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcch
Confidence 333344555556666666666666664 34455666666666666666666545543 556666666666666666555
Q ss_pred chHhhhCCcCCEEEccCccCcccCChhccCCCCCCEEEcccCCCCCCCChh-hhccCCCCCCCCCCCCCCCCCCCCC
Q 024632 136 PPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPAS-LGNRSGNLPKFNASSFEGNKDLYGY 211 (265)
Q Consensus 136 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~-~~~~~~~l~~l~~~~~~~N~~~c~~ 211 (265)
|..+. ++|++|++++|+++ .+|..+..+++|+.|++++|+++ .+|.. +.. ++.++.+++++|++.|.|
T Consensus 416 ~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~----l~~L~~L~l~~N~~~c~c 484 (520)
T 2z7x_B 416 FRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDR----LTSLQKIWLHTNPWDCSC 484 (520)
T ss_dssp GGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTT----CTTCCEEECCSSCBCCCH
T ss_pred hhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhcc----CCcccEEECcCCCCcccC
Confidence 54432 56777777777777 66766667777777777777777 45554 433 666777777777777653
No 49
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.70 E-value=1.5e-17 Score=160.93 Aligned_cols=144 Identities=22% Similarity=0.273 Sum_probs=124.4
Q ss_pred CCCCCCCCCCceeecCCCeEEEEeeCCCccc-----------------cCCccCc--CCCCCCEEECcCCCCCCCCCCCc
Q 024632 55 ACNGFTSYLPGATCNNGRIYKLSLTNLSLQG-----------------SISPYLS--NCTNLQSLDLSSNALTGSIPADL 115 (265)
Q Consensus 55 ~c~~~~~~~~~~~~~~~~l~~L~L~~n~l~~-----------------~~p~~l~--~l~~L~~L~Ls~N~l~~~~p~~l 115 (265)
.+|.+++ +|..+.++++|++|+|++|.+++ .+|..++ ++++|++|+|++|.+.+.+|..+
T Consensus 433 ~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l 511 (876)
T 4ecn_A 433 LTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFL 511 (876)
T ss_dssp CSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGG
T ss_pred ccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHH
Confidence 4566666 78888899999999999999998 3899988 99999999999999999999999
Q ss_pred ccCcccceecccccc-CCC-CCchHhhhCC-------cCCEEEccCccCcccCCh--hccCCCCCCEEEcccCCCCCCCC
Q 024632 116 QYLVNLAVLNLSANR-LAG-EIPPQLTLCA-------YLNVIDLHDNLLTGQIPQ--QLGLLVRLSAFDVSNNKLSGPIP 184 (265)
Q Consensus 116 ~~l~~L~~L~Ls~N~-l~~-~~p~~~~~l~-------~L~~L~Ls~N~l~~~~p~--~~~~l~~L~~L~l~~N~l~g~~p 184 (265)
.++++|+.|++++|+ ++| .+|..++.++ +|++|++++|+++ .+|. .++.+++|+.|++++|.++ .+|
T Consensus 512 ~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp 589 (876)
T 4ecn_A 512 YDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE 589 (876)
T ss_dssp GGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC
T ss_pred hCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch
Confidence 999999999999998 998 7898888776 9999999999999 8888 8999999999999999998 788
Q ss_pred hhhhccCCCCCCCCCCCCCCCC
Q 024632 185 ASLGNRSGNLPKFNASSFEGNK 206 (265)
Q Consensus 185 ~~~~~~~~~l~~l~~~~~~~N~ 206 (265)
.+.+ ++.|+.+++++|.
T Consensus 590 -~~~~----L~~L~~L~Ls~N~ 606 (876)
T 4ecn_A 590 -AFGT----NVKLTDLKLDYNQ 606 (876)
T ss_dssp -CCCT----TSEESEEECCSSC
T ss_pred -hhcC----CCcceEEECcCCc
Confidence 5554 5555566666654
No 50
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.69 E-value=7.4e-17 Score=141.70 Aligned_cols=136 Identities=25% Similarity=0.204 Sum_probs=117.0
Q ss_pred CCeEEEEeeCCCccccCCccCc-CCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEEE
Q 024632 71 GRIYKLSLTNLSLQGSISPYLS-NCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVID 149 (265)
Q Consensus 71 ~~l~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 149 (265)
..++.|+|++|.+++..+..+. .+++|+.|+|++|++++..+..|..+++|++|+|++|.+++..+..+..+++|++|+
T Consensus 39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 118 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLL 118 (361)
T ss_dssp TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEE
Confidence 4578999999999977777777 899999999999999976677899999999999999999977777899999999999
Q ss_pred ccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCCC
Q 024632 150 LHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKD 207 (265)
Q Consensus 150 Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~~ 207 (265)
|++|++++..|..|..+++|+.|++++|++++ +|..+......++.|+.+++++|..
T Consensus 119 L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~~~~l~~L~~L~L~~N~l 175 (361)
T 2xot_A 119 LYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR-FPVELIKDGNKLPKLMLLDLSSNKL 175 (361)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCCS-CCGGGTC----CTTCCEEECCSSCC
T ss_pred CCCCcccEECHHHhCCcccCCEEECCCCcCCe-eCHHHhcCcccCCcCCEEECCCCCC
Confidence 99999998888999999999999999999994 6655432123488899999999974
No 51
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.69 E-value=1.2e-16 Score=149.03 Aligned_cols=150 Identities=17% Similarity=0.128 Sum_probs=100.3
Q ss_pred CCCCCCCCceeecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCc
Q 024632 57 NGFTSYLPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIP 136 (265)
Q Consensus 57 ~~~~~~~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 136 (265)
|.+.+..+..+.++++|++|++++|.+++..|..|.++++|++|++++|.+++..|..+..+++|++|++++|.+++..+
T Consensus 42 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~ 121 (606)
T 3vq2_A 42 NPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLES 121 (606)
T ss_dssp SCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSS
T ss_pred CCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccc
Confidence 44444444456667777777777777776666667777777777777777776667777777777777777777775555
Q ss_pred hHhhhCCcCCEEEccCccCcc-cCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCC-CCCCCCCCCCC
Q 024632 137 PQLTLCAYLNVIDLHDNLLTG-QIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPK-FNASSFEGNKD 207 (265)
Q Consensus 137 ~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~-l~~~~~~~N~~ 207 (265)
..++++++|++|++++|.+++ .+|..++.+++|++|++++|++++..|..+..+.. ++. +..+++++|..
T Consensus 122 ~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~-L~~~l~~L~l~~n~l 193 (606)
T 3vq2_A 122 FPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRE-NPQVNLSLDMSLNPI 193 (606)
T ss_dssp SCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHH-CTTCCCEEECTTCCC
T ss_pred cccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhc-cccccceeeccCCCc
Confidence 667777777777777777764 46777777777777777777777666665555211 211 23466666653
No 52
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.68 E-value=6.3e-17 Score=138.61 Aligned_cols=141 Identities=18% Similarity=0.179 Sum_probs=100.8
Q ss_pred ceeecCCCeEEEEeeCCCccccCC-ccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCC-CCchHhhhC
Q 024632 65 GATCNNGRIYKLSLTNLSLQGSIS-PYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAG-EIPPQLTLC 142 (265)
Q Consensus 65 ~~~~~~~~l~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-~~p~~~~~l 142 (265)
..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++ .+|..+..+
T Consensus 95 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l 174 (306)
T 2z66_A 95 SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL 174 (306)
T ss_dssp EEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTC
T ss_pred hhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhC
Confidence 334556667777777776664333 456777777777777777776666667777778888888777765 456677777
Q ss_pred CcCCEEEccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCCCCC
Q 024632 143 AYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKDLY 209 (265)
Q Consensus 143 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~~~c 209 (265)
++|++|++++|++++..|..+..+++|+.|++++|.+++..+..+.. ++.++.+++++|....
T Consensus 175 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~----l~~L~~L~L~~N~l~~ 237 (306)
T 2z66_A 175 RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKC----LNSLQVLDYSLNHIMT 237 (306)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTT----CTTCCEEECTTSCCCB
T ss_pred cCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccC----cccCCEeECCCCCCcc
Confidence 78888888888887766777777888888888888887655555554 7778888888887543
No 53
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.68 E-value=8.1e-17 Score=146.16 Aligned_cols=145 Identities=18% Similarity=0.119 Sum_probs=105.9
Q ss_pred CCCCCCCCceeecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCc
Q 024632 57 NGFTSYLPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIP 136 (265)
Q Consensus 57 ~~~~~~~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 136 (265)
|.+.+..+..+.++++|++|+|++|.+++..|..+.++++|++|++++|.+++..+..|..+++|++|++++|.+++..|
T Consensus 42 n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~ 121 (477)
T 2id5_A 42 NRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLD 121 (477)
T ss_dssp SCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECT
T ss_pred CccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCCh
Confidence 34444445566677888888888888887777788888888888888888884444557788888888888888887777
Q ss_pred hHhhhCCcCCEEEccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCC
Q 024632 137 PQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGN 205 (265)
Q Consensus 137 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N 205 (265)
..+..+++|++|++++|.+++..|..|..+++|+.|++++|.+++..+..+.+ ++.|+.+++++|
T Consensus 122 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~----l~~L~~L~l~~n 186 (477)
T 2id5_A 122 YMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSH----LHGLIVLRLRHL 186 (477)
T ss_dssp TTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTT----CTTCCEEEEESC
T ss_pred hHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcc----cCCCcEEeCCCC
Confidence 77888888888888888888777777888888888888888887544444444 344444444443
No 54
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.67 E-value=1.6e-16 Score=127.85 Aligned_cols=130 Identities=21% Similarity=0.252 Sum_probs=103.5
Q ss_pred eecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCC
Q 024632 67 TCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLN 146 (265)
Q Consensus 67 ~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 146 (265)
+..+++|++|++++|.++ .++.+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|+
T Consensus 62 l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~ 139 (197)
T 4ezg_A 62 IEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVN 139 (197)
T ss_dssp GGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCC
T ss_pred HhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCC
Confidence 556788888888888665 334678888888999988888876777888888899999999888877788888888899
Q ss_pred EEEccCcc-CcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCC
Q 024632 147 VIDLHDNL-LTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNK 206 (265)
Q Consensus 147 ~L~Ls~N~-l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~ 206 (265)
+|++++|. ++ .+| .+..+++|+.|++++|++++ ++ .+.. ++.|+.+++++|+
T Consensus 140 ~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~----l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 140 SIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIED----FPKLNQLYAFSQT 192 (197)
T ss_dssp EEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGG----CSSCCEEEECBC-
T ss_pred EEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-Hhcc----CCCCCEEEeeCcc
Confidence 99998888 55 566 57888888999998888874 44 4555 7788888888886
No 55
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.67 E-value=3.1e-16 Score=123.79 Aligned_cols=114 Identities=21% Similarity=0.193 Sum_probs=101.2
Q ss_pred CCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEEEc
Q 024632 71 GRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDL 150 (265)
Q Consensus 71 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 150 (265)
+++++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 68999999999999666667899999999999999999655666889999999999999999777777899999999999
Q ss_pred cCccCcccCChhccCCCCCCEEEcccCCCCCCCC
Q 024632 151 HDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIP 184 (265)
Q Consensus 151 s~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p 184 (265)
++|++++..+..+..+++|+.|++++|++++..|
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 108 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 9999996555567889999999999999998765
No 56
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.67 E-value=1.3e-16 Score=147.00 Aligned_cols=133 Identities=20% Similarity=0.168 Sum_probs=106.0
Q ss_pred CCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEEEc
Q 024632 71 GRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDL 150 (265)
Q Consensus 71 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 150 (265)
+++++|++++|.+++..|..+.++++|++|++++|++++..|..+..+++|++|++++|.+++..|..++.+++|++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 57888899998888777778888888999999998888777778888888999999999888777777888888999999
Q ss_pred cCccCcc-cCChhccCCCCCCEEEcccCCCCCCCC-hhhhccCCCCCCCCCCCCCCCCC
Q 024632 151 HDNLLTG-QIPQQLGLLVRLSAFDVSNNKLSGPIP-ASLGNRSGNLPKFNASSFEGNKD 207 (265)
Q Consensus 151 s~N~l~~-~~p~~~~~l~~L~~L~l~~N~l~g~~p-~~~~~~~~~l~~l~~~~~~~N~~ 207 (265)
++|.+++ ..|..++.+++|+.|++++|.+.+.+| ..+.+ ++.++.+++++|..
T Consensus 106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~----l~~L~~L~L~~n~l 160 (549)
T 2z81_A 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAG----LTSLNELEIKALSL 160 (549)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTT----CCEEEEEEEEETTC
T ss_pred CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhc----ccccCeeeccCCcc
Confidence 9888885 356778888888888888888555555 35554 66666777766653
No 57
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.67 E-value=3.1e-16 Score=125.89 Aligned_cols=111 Identities=24% Similarity=0.241 Sum_probs=102.2
Q ss_pred CCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEEEc
Q 024632 71 GRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDL 150 (265)
Q Consensus 71 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 150 (265)
+++++|++++|.++ .+|..+..+++|+.|++++|.+++..+..|..+++|++|+|++|.+++..|..+..+++|++|++
T Consensus 31 ~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L 109 (193)
T 2wfh_A 31 RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL 109 (193)
T ss_dssp TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEEC
Confidence 57999999999998 78889999999999999999999777778999999999999999999888888999999999999
Q ss_pred cCccCcccCChhccCCCCCCEEEcccCCCCCC
Q 024632 151 HDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGP 182 (265)
Q Consensus 151 s~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ 182 (265)
++|++++..+..|..+++|+.|++++|++...
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~ 141 (193)
T 2wfh_A 110 HGNDISVVPEGAFNDLSALSHLAIGANPLYCD 141 (193)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred CCCCCCeeChhhhhcCccccEEEeCCCCeecC
Confidence 99999966666789999999999999999754
No 58
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.66 E-value=6e-17 Score=147.03 Aligned_cols=142 Identities=22% Similarity=0.197 Sum_probs=93.1
Q ss_pred eeecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcC------------------------CCCCCCCC-CCcccCcc
Q 024632 66 ATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSS------------------------NALTGSIP-ADLQYLVN 120 (265)
Q Consensus 66 ~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~------------------------N~l~~~~p-~~l~~l~~ 120 (265)
.+..+++|+.|++++|.+.+..+..+..+++|+.|++++ |.++ .+| ..+..+++
T Consensus 171 ~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~ 249 (477)
T 2id5_A 171 ALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVY 249 (477)
T ss_dssp HHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCC-SCCHHHHTTCTT
T ss_pred HhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCccc-ccCHHHhcCccc
Confidence 345566677777777766655555555555555555554 5554 233 34556666
Q ss_pred cceeccccccCCCCCchHhhhCCcCCEEEccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCC
Q 024632 121 LAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNAS 200 (265)
Q Consensus 121 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~ 200 (265)
|+.|++++|.+++..+..+..+++|+.|++++|++++..|..+..+++|+.|++++|++++..+..+.. ++.|+.+
T Consensus 250 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~----l~~L~~L 325 (477)
T 2id5_A 250 LRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHS----VGNLETL 325 (477)
T ss_dssp CCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSC----GGGCCEE
T ss_pred cCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCC----CcccCEE
Confidence 777777777766555555666777777777777777666777777777777777777777544444444 6778888
Q ss_pred CCCCCCCCCCCC
Q 024632 201 SFEGNKDLYGYP 212 (265)
Q Consensus 201 ~~~~N~~~c~~~ 212 (265)
++++|++.|.++
T Consensus 326 ~l~~N~l~c~c~ 337 (477)
T 2id5_A 326 ILDSNPLACDCR 337 (477)
T ss_dssp ECCSSCEECSGG
T ss_pred EccCCCccCccc
Confidence 889998888764
No 59
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.66 E-value=1.5e-16 Score=143.34 Aligned_cols=132 Identities=21% Similarity=0.214 Sum_probs=80.3
Q ss_pred CCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCC-CCCcccCcccceeccccccCCCCCchHhhhCCcCCEEE
Q 024632 71 GRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSI-PADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVID 149 (265)
Q Consensus 71 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 149 (265)
+++++|++++|.+++..|..+.++++|++|++++|.+.+.+ +..+..+++|++|++++|.+++..|..+.++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 45666666666666555666666666666666666665444 34466666666666666666655566666666666666
Q ss_pred ccCccCcccCChh--ccCCCCCCEEEcccCCCCCCCChh-hhccCCCCCCCCCCCCCCCC
Q 024632 150 LHDNLLTGQIPQQ--LGLLVRLSAFDVSNNKLSGPIPAS-LGNRSGNLPKFNASSFEGNK 206 (265)
Q Consensus 150 Ls~N~l~~~~p~~--~~~l~~L~~L~l~~N~l~g~~p~~-~~~~~~~l~~l~~~~~~~N~ 206 (265)
+++|++++..|.. +..+++|+.|++++|.+++..|.. +.+ ++.|+.+++++|.
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~----l~~L~~L~L~~n~ 165 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLN----MRRFHVLDLTFNK 165 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGG----CTTCCEEECTTCC
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCC----CCcccEEeCCCCc
Confidence 6666666544433 566666666666666666555554 334 5555555665554
No 60
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.66 E-value=3.3e-16 Score=123.69 Aligned_cols=130 Identities=19% Similarity=0.219 Sum_probs=109.6
Q ss_pred eecCCCeEEEEeeCCCccccCCccCcCC-CCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcC
Q 024632 67 TCNNGRIYKLSLTNLSLQGSISPYLSNC-TNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYL 145 (265)
Q Consensus 67 ~~~~~~l~~L~L~~n~l~~~~p~~l~~l-~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 145 (265)
+.+..++++|++++|.++ .+|. +..+ ++|++|++++|.+++ + ..+..+++|++|++++|.+++..+..+..+++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~-~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCc-c-cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 445788999999999999 4555 4444 499999999999995 4 678899999999999999996555556999999
Q ss_pred CEEEccCccCcccCCh--hccCCCCCCEEEcccCCCCCCCChh----hhccCCCCCCCCCCCCCCCC
Q 024632 146 NVIDLHDNLLTGQIPQ--QLGLLVRLSAFDVSNNKLSGPIPAS----LGNRSGNLPKFNASSFEGNK 206 (265)
Q Consensus 146 ~~L~Ls~N~l~~~~p~--~~~~l~~L~~L~l~~N~l~g~~p~~----~~~~~~~l~~l~~~~~~~N~ 206 (265)
++|++++|+++ .+|. .+..+++|+.|++++|+++ .+|.. +.. ++.++.+++++|+
T Consensus 91 ~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~----l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 91 TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYK----VPQVRVLDFQKVK 151 (176)
T ss_dssp CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHH----CTTCSEETTEECC
T ss_pred CEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHH----CCccceeCCCcCC
Confidence 99999999997 6676 7889999999999999998 56764 666 8888888888875
No 61
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.66 E-value=2.2e-16 Score=147.31 Aligned_cols=148 Identities=16% Similarity=0.037 Sum_probs=114.8
Q ss_pred CCCCCCCCCceeecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCC
Q 024632 56 CNGFTSYLPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEI 135 (265)
Q Consensus 56 c~~~~~~~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 135 (265)
.|.+.+..+..+.++++|++|++++|.+++..|..|.++++|++|++++|.+.+..|..+..+++|++|++++|.+++..
T Consensus 42 ~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~ 121 (606)
T 3t6q_A 42 FNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSID 121 (606)
T ss_dssp TCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGG
T ss_pred CCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCC
Confidence 34555555667778888888888888888777888888888888888888888777888888888888888888888655
Q ss_pred chHhhhCCcCCEEEccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCC--CCCCCCCCC
Q 024632 136 PPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFN--ASSFEGNKD 207 (265)
Q Consensus 136 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~--~~~~~~N~~ 207 (265)
|..+..+++|++|++++|++++..+..+..+++|+.|++++|.+++..|..+.. ++.++ .+++++|..
T Consensus 122 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~----l~~L~~l~L~l~~n~l 191 (606)
T 3t6q_A 122 FIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSS----LQQATNLSLNLNGNDI 191 (606)
T ss_dssp GSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHT----TTTCCSEEEECTTCCC
T ss_pred cchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhh----hcccceeEEecCCCcc
Confidence 677888888888888888888633333445888888888888888777777776 55666 567777763
No 62
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.65 E-value=2.7e-16 Score=146.86 Aligned_cols=112 Identities=20% Similarity=0.184 Sum_probs=65.2
Q ss_pred CCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEEE
Q 024632 70 NGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVID 149 (265)
Q Consensus 70 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 149 (265)
+++|++|++++|.+++..|..+..+++|++|+|++|.+++..|..++.+++|++|+|++|.+++..+..+..+++|++|+
T Consensus 74 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 153 (597)
T 3oja_B 74 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLS 153 (597)
T ss_dssp CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEE
Confidence 44555666666666554455566666666666666666654455555666666666666666533333345566666666
Q ss_pred ccCccCcccCChhccCCCCCCEEEcccCCCCC
Q 024632 150 LHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSG 181 (265)
Q Consensus 150 Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g 181 (265)
+++|.+++..|..++.+++|+.|++++|.+++
T Consensus 154 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 185 (597)
T 3oja_B 154 MSNNNLERIEDDTFQATTSLQNLQLSSNRLTH 185 (597)
T ss_dssp CCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB
T ss_pred eeCCcCCCCChhhhhcCCcCcEEECcCCCCCC
Confidence 66666665555555666666666666666654
No 63
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.65 E-value=8.9e-17 Score=138.35 Aligned_cols=115 Identities=21% Similarity=0.258 Sum_probs=52.1
Q ss_pred ecCCCeEEEEeeCCCccccCCccCcCC-----CCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCC--CchHh-
Q 024632 68 CNNGRIYKLSLTNLSLQGSISPYLSNC-----TNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGE--IPPQL- 139 (265)
Q Consensus 68 ~~~~~l~~L~L~~n~l~~~~p~~l~~l-----~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~--~p~~~- 139 (265)
..+++|++|++++|.+++. |..+..+ ++|++|++++|++.+..|..+..+++|++|++++|++.+. .|..+
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 196 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC 196 (312)
T ss_dssp CCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred hcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH
Confidence 3445555555555555533 4434333 4555555555555544444455555555555555554432 12222
Q ss_pred -hhCCcCCEEEccCccCcc--cCC-hhccCCCCCCEEEcccCCCCCCC
Q 024632 140 -TLCAYLNVIDLHDNLLTG--QIP-QQLGLLVRLSAFDVSNNKLSGPI 183 (265)
Q Consensus 140 -~~l~~L~~L~Ls~N~l~~--~~p-~~~~~l~~L~~L~l~~N~l~g~~ 183 (265)
..+++|++|++++|++++ .++ ..+..+++|+.|++++|++++..
T Consensus 197 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 244 (312)
T 1wwl_A 197 PLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAA 244 (312)
T ss_dssp TTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSC
T ss_pred hccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCccc
Confidence 444445555555554441 111 11234444555555555554433
No 64
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.64 E-value=1.1e-15 Score=120.13 Aligned_cols=108 Identities=23% Similarity=0.193 Sum_probs=96.1
Q ss_pred EEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEEEccCc
Q 024632 74 YKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDN 153 (265)
Q Consensus 74 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 153 (265)
+++++++|.++ .+|..+. ++|++|++++|.+++..|..|..+++|++|+|++|++++..+..+..+++|++|++++|
T Consensus 12 ~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 57899999998 5787664 89999999999999777888999999999999999999777777899999999999999
Q ss_pred cCcccCChhccCCCCCCEEEcccCCCCCCCC
Q 024632 154 LLTGQIPQQLGLLVRLSAFDVSNNKLSGPIP 184 (265)
Q Consensus 154 ~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p 184 (265)
++++..+..|..+++|+.|++++|+++...+
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 9997666679999999999999999986544
No 65
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.64 E-value=1.1e-15 Score=138.11 Aligned_cols=75 Identities=20% Similarity=0.156 Sum_probs=49.1
Q ss_pred CCCCCCceeecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCC
Q 024632 59 FTSYLPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAG 133 (265)
Q Consensus 59 ~~~~~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 133 (265)
+....+..+.++++|++|+|++|.+++..+..+.++++|++|+|++|.+++..+..+..+++|++|++++|.++.
T Consensus 87 i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 161 (452)
T 3zyi_A 87 IQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIES 161 (452)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCE
T ss_pred CceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcce
Confidence 333334555566777777777777776666667777777777777777774444456666777777777766653
No 66
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.64 E-value=8.1e-17 Score=140.78 Aligned_cols=121 Identities=21% Similarity=0.187 Sum_probs=54.1
Q ss_pred eecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCch--HhhhCCc
Q 024632 67 TCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPP--QLTLCAY 144 (265)
Q Consensus 67 ~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~--~~~~l~~ 144 (265)
+.++++|++|++++|.+++..|..+.++++|++|++++|.+++..+..+..+++|++|++++|.+++ +|. .+..+++
T Consensus 72 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~~l~~ 150 (353)
T 2z80_A 72 LQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKT-LGETSLFSHLTK 150 (353)
T ss_dssp TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSS-SCSSCSCTTCTT
T ss_pred hccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcc-cCchhhhccCCC
Confidence 3344445555555554444334444444455555555554442211224444445555555554442 222 3444444
Q ss_pred CCEEEccCcc-CcccCChhccCCCCCCEEEcccCCCCCCCChhhh
Q 024632 145 LNVIDLHDNL-LTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLG 188 (265)
Q Consensus 145 L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~ 188 (265)
|++|++++|+ +.+..|..+..+++|+.|++++|.+++..|..+.
T Consensus 151 L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~ 195 (353)
T 2z80_A 151 LQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLK 195 (353)
T ss_dssp CCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTT
T ss_pred CcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHh
Confidence 4444444442 3333334444444455555555554444444443
No 67
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.64 E-value=3.7e-16 Score=144.45 Aligned_cols=140 Identities=18% Similarity=0.158 Sum_probs=94.5
Q ss_pred CCceeecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhC
Q 024632 63 LPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLC 142 (265)
Q Consensus 63 ~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l 142 (265)
.+..+.++++|++|++++|.+++..+..+.++++|++|++++|.+++..|..|..+++|++|++++|.+++..+..++.+
T Consensus 44 ~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l 123 (570)
T 2z63_A 44 GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHL 123 (570)
T ss_dssp CTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTC
T ss_pred ChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCcccccc
Confidence 34455566777777777777776556667777777777777777775555667777777777777777775444457777
Q ss_pred CcCCEEEccCccCcc-cCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCC----CCCCCCCCC
Q 024632 143 AYLNVIDLHDNLLTG-QIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKF----NASSFEGNK 206 (265)
Q Consensus 143 ~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l----~~~~~~~N~ 206 (265)
++|++|++++|.+++ .+|..++.+++|+.|++++|.+++..|..+.. ++.+ ..+++++|.
T Consensus 124 ~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~----l~~L~~~~~~L~l~~n~ 188 (570)
T 2z63_A 124 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV----LHQMPLLNLSLDLSLNP 188 (570)
T ss_dssp TTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHH----HHTCTTCCCEEECTTCC
T ss_pred ccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccc----hhccchhhhhcccCCCC
Confidence 777777777777765 45777777777777777777777665665555 2233 345555654
No 68
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.64 E-value=8.5e-16 Score=148.96 Aligned_cols=148 Identities=22% Similarity=0.164 Sum_probs=108.6
Q ss_pred CCCCCCCCceeecCCCeEEEEeeCCCccccC-CccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCC
Q 024632 57 NGFTSYLPGATCNNGRIYKLSLTNLSLQGSI-SPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEI 135 (265)
Q Consensus 57 ~~~~~~~~~~~~~~~~l~~L~L~~n~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 135 (265)
|.+....+..+.++++|++|+|++|...+.+ |..+.++++|++|+|++|.+.+..|..|..+++|++|+|++|.+++.+
T Consensus 34 N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~ 113 (844)
T 3j0a_A 34 NYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAV 113 (844)
T ss_dssp CCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCC
T ss_pred CcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCccc
Confidence 3444445566677888888888888655555 667888888888888888888777888888888888888888888766
Q ss_pred chH--hhhCCcCCEEEccCccCcccCC-hhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCC
Q 024632 136 PPQ--LTLCAYLNVIDLHDNLLTGQIP-QQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNK 206 (265)
Q Consensus 136 p~~--~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~ 206 (265)
|.. +..+++|++|++++|.+++..| ..++++++|+.|++++|.+++..|..+..+.. +.++.+++++|.
T Consensus 114 ~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~--~~L~~L~L~~n~ 185 (844)
T 3j0a_A 114 LKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQG--KTLSFFSLAANS 185 (844)
T ss_dssp STTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHH--CSSCCCEECCSB
T ss_pred ccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccC--CccceEECCCCc
Confidence 655 7788888888888888876544 56788888888888888888777777765210 445555555554
No 69
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.64 E-value=4.6e-16 Score=121.71 Aligned_cols=123 Identities=28% Similarity=0.286 Sum_probs=106.5
Q ss_pred CCCCceeecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCC-chHh
Q 024632 61 SYLPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEI-PPQL 139 (265)
Q Consensus 61 ~~~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~~ 139 (265)
+..|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|++++|.+++.. +..+
T Consensus 39 ~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l 116 (168)
T 2ell_A 39 GKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPL 116 (168)
T ss_dssp TBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGG
T ss_pred hhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHH
Confidence 35777778899999999999999954 77999999999999999999778877778999999999999999532 2788
Q ss_pred hhCCcCCEEEccCccCcccCC---hhccCCCCCCEEEcccCCCCCCCChh
Q 024632 140 TLCAYLNVIDLHDNLLTGQIP---QQLGLLVRLSAFDVSNNKLSGPIPAS 186 (265)
Q Consensus 140 ~~l~~L~~L~Ls~N~l~~~~p---~~~~~l~~L~~L~l~~N~l~g~~p~~ 186 (265)
..+++|++|++++|.+++..+ ..+..+++|+.|++++|.+. .+|.+
T Consensus 117 ~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~ 165 (168)
T 2ell_A 117 KKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPDS 165 (168)
T ss_dssp SSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCSS
T ss_pred hcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hcccc
Confidence 999999999999999995544 47899999999999999987 55643
No 70
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.64 E-value=1.3e-16 Score=137.28 Aligned_cols=137 Identities=20% Similarity=0.224 Sum_probs=113.5
Q ss_pred cCCCeEEEEeeCCCccccCCccC--cCCCCCCEEECcCCCCCCCCCCCcccC-----cccceeccccccCCCCCchHhhh
Q 024632 69 NNGRIYKLSLTNLSLQGSISPYL--SNCTNLQSLDLSSNALTGSIPADLQYL-----VNLAVLNLSANRLAGEIPPQLTL 141 (265)
Q Consensus 69 ~~~~l~~L~L~~n~l~~~~p~~l--~~l~~L~~L~Ls~N~l~~~~p~~l~~l-----~~L~~L~Ls~N~l~~~~p~~~~~ 141 (265)
++++|++|++++|.+++.+|..+ ..+++|++|++++|.+++. |..+..+ ++|++|++++|.+++..|..++.
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~ 171 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence 47899999999999998888876 8999999999999999966 8777777 89999999999999888889999
Q ss_pred CCcCCEEEccCccCccc--CChhc--cCCCCCCEEEcccCCCCC--CCChhhhccCCCCCCCCCCCCCCCCCCC
Q 024632 142 CAYLNVIDLHDNLLTGQ--IPQQL--GLLVRLSAFDVSNNKLSG--PIPASLGNRSGNLPKFNASSFEGNKDLY 209 (265)
Q Consensus 142 l~~L~~L~Ls~N~l~~~--~p~~~--~~l~~L~~L~l~~N~l~g--~~p~~~~~~~~~l~~l~~~~~~~N~~~c 209 (265)
+++|++|++++|++.+. +|..+ ..+++|+.|++++|.+++ .++..+. ..++.++.+++++|....
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~---~~l~~L~~L~Ls~N~l~~ 242 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALA---AARVQLQGLDLSHNSLRD 242 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHH---HTTCCCSEEECTTSCCCS
T ss_pred CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHH---hcCCCCCEEECCCCcCCc
Confidence 99999999999998865 34445 889999999999999983 2232222 126778888888886433
No 71
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.63 E-value=1.1e-15 Score=120.22 Aligned_cols=109 Identities=21% Similarity=0.236 Sum_probs=96.7
Q ss_pred CCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEEEccCccCcccCChhccCCCCCCEEEccc
Q 024632 97 LQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSN 176 (265)
Q Consensus 97 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~ 176 (265)
.+.+++++|.++ .+|..+. ++|++|+|++|.+++..|..+..+++|++|++++|++++..|..|..+++|+.|++++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 578999999999 6887764 8999999999999988888999999999999999999977667789999999999999
Q ss_pred CCCCCCCChhhhccCCCCCCCCCCCCCCCCCCCCCC
Q 024632 177 NKLSGPIPASLGNRSGNLPKFNASSFEGNKDLYGYP 212 (265)
Q Consensus 177 N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~~~c~~~ 212 (265)
|++++..|..+.+ ++.|+.+++++|++.|.++
T Consensus 88 N~l~~~~~~~~~~----l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 88 NQLKSIPRGAFDN----LKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp SCCCCCCTTTTTT----CTTCCEEECCSSCBCTTBG
T ss_pred CccCEeCHHHhcC----CCCCCEEEeCCCCCCCCch
Confidence 9999766656766 8889999999999998763
No 72
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.63 E-value=2e-15 Score=135.90 Aligned_cols=144 Identities=20% Similarity=0.186 Sum_probs=95.4
Q ss_pred CCCCCCceeecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceecccc----------
Q 024632 59 FTSYLPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSA---------- 128 (265)
Q Consensus 59 ~~~~~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~---------- 128 (265)
+...-++.+.++++|++|+|++|.++...+..+..+++|++|++++|.++...+..+..+++|++|++++
T Consensus 100 i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~ 179 (440)
T 3zyj_A 100 IRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEG 179 (440)
T ss_dssp CCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTT
T ss_pred CCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcc
Confidence 3333346677899999999999999966666799999999999999998854444455555555555554
Q ss_pred ---------------ccCCCCCchHhhhCCcCCEEEccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCC
Q 024632 129 ---------------NRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGN 193 (265)
Q Consensus 129 ---------------N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~ 193 (265)
|.++ .+| .+..+++|++|++++|++++..|..|..+++|+.|++++|++++..|..+.+
T Consensus 180 ~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~---- 253 (440)
T 3zyj_A 180 AFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDN---- 253 (440)
T ss_dssp TTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTT----
T ss_pred hhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcC----
Confidence 4444 233 2444555555556666665555556666666666666666666555555544
Q ss_pred CCCCCCCCCCCCCCC
Q 024632 194 LPKFNASSFEGNKDL 208 (265)
Q Consensus 194 l~~l~~~~~~~N~~~ 208 (265)
++.|+.+++++|...
T Consensus 254 l~~L~~L~L~~N~l~ 268 (440)
T 3zyj_A 254 LQSLVEINLAHNNLT 268 (440)
T ss_dssp CTTCCEEECTTSCCC
T ss_pred CCCCCEEECCCCCCC
Confidence 677777888888643
No 73
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.63 E-value=5.9e-16 Score=137.00 Aligned_cols=114 Identities=19% Similarity=0.174 Sum_probs=72.3
Q ss_pred ecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCE
Q 024632 68 CNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNV 147 (265)
Q Consensus 68 ~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 147 (265)
..+++|++|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|++|++++|.++...+..+..+++|++
T Consensus 66 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~ 145 (390)
T 3o6n_A 66 DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTT 145 (390)
T ss_dssp HHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcE
Confidence 34566666666666666555556666666666666666666555555666666666666666666333333466666666
Q ss_pred EEccCccCcccCChhccCCCCCCEEEcccCCCCC
Q 024632 148 IDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSG 181 (265)
Q Consensus 148 L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g 181 (265)
|++++|.+++..|..+..+++|+.|++++|.+++
T Consensus 146 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 179 (390)
T 3o6n_A 146 LSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH 179 (390)
T ss_dssp EECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB
T ss_pred EECCCCccCccChhhccCCCCCCEEECCCCcCCc
Confidence 6666666665555566666666666666666664
No 74
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.63 E-value=8.9e-16 Score=132.85 Aligned_cols=133 Identities=19% Similarity=0.228 Sum_probs=81.5
Q ss_pred eecCCCeEEEEeeCCCcc--ccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCc
Q 024632 67 TCNNGRIYKLSLTNLSLQ--GSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAY 144 (265)
Q Consensus 67 ~~~~~~l~~L~L~~n~l~--~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 144 (265)
+..+++|++|++++|.+. +..+..+..+++|++|++++|.++ .+|..+. ++|++|++++|.+++..|..+..+++
T Consensus 141 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~ 217 (330)
T 1xku_A 141 FNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNN 217 (330)
T ss_dssp HTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTT
T ss_pred hcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCC
Confidence 334555666666666554 234455556666666666666665 3444432 56666666666666555666666677
Q ss_pred CCEEEccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCCC
Q 024632 145 LNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKD 207 (265)
Q Consensus 145 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~~ 207 (265)
|++|++++|.+++..+..+..+++|+.|++++|+++ .+|..+.. ++.++.+++++|+.
T Consensus 218 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~----l~~L~~L~l~~N~i 275 (330)
T 1xku_A 218 LAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLAD----HKYIQVVYLHNNNI 275 (330)
T ss_dssp CCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTT----CSSCCEEECCSSCC
T ss_pred CCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhcc----CCCcCEEECCCCcC
Confidence 777777777776655556666677777777777776 56665544 55666666666653
No 75
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.63 E-value=8.7e-16 Score=145.16 Aligned_cols=149 Identities=17% Similarity=0.121 Sum_probs=111.0
Q ss_pred CCCCCCCCceeecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCc
Q 024632 57 NGFTSYLPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIP 136 (265)
Q Consensus 57 ~~~~~~~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 136 (265)
|.+.+..+..+.++++|++|++++|.+++..|..+.++++|++|++++|.+++..+..|..+++|++|++++|.+++..|
T Consensus 35 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~ 114 (680)
T 1ziw_A 35 NQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKN 114 (680)
T ss_dssp SCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCS
T ss_pred CCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccCh
Confidence 34444444556777888888888888887777778888888888888888884333457888888888888888886666
Q ss_pred hHhhhCCcCCEEEccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCCC
Q 024632 137 PQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKD 207 (265)
Q Consensus 137 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~~ 207 (265)
..++++++|++|++++|.+++..|..++.+++|++|++++|.+++..|..+... ..+.++.+++++|..
T Consensus 115 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~--~~~~L~~L~L~~n~l 183 (680)
T 1ziw_A 115 NPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIF--ANSSLKKLELSSNQI 183 (680)
T ss_dssp CTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGG--TTCEESEEECTTCCC
T ss_pred hHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhcc--ccccccEEECCCCcc
Confidence 778888888888888888887777777888888888888888886666555431 146677778888753
No 76
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.63 E-value=8.6e-16 Score=143.48 Aligned_cols=134 Identities=14% Similarity=0.142 Sum_probs=110.7
Q ss_pred cCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEE
Q 024632 69 NNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVI 148 (265)
Q Consensus 69 ~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 148 (265)
.+.+++.+++++|.+....+..+..+++|+.|++++|.+++..|..+..+++|++|+|++|.+++..|..++.+++|++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 35778899999998885555557888999999999999997777788999999999999999998777788899999999
Q ss_pred EccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCC
Q 024632 149 DLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNK 206 (265)
Q Consensus 149 ~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~ 206 (265)
++++|.+++..+..|+.+++|++|++++|.+++..|..+.+ ++.|+.+++++|.
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~----l~~L~~L~L~~N~ 182 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQA----TTSLQNLQLSSNR 182 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTT----CTTCCEEECTTSC
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhc----CCcCcEEECcCCC
Confidence 99999999555555688999999999999999877777766 6666677777665
No 77
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.63 E-value=1.3e-16 Score=147.09 Aligned_cols=151 Identities=17% Similarity=0.122 Sum_probs=124.7
Q ss_pred CCCCCCCCceeecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCC-CC
Q 024632 57 NGFTSYLPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAG-EI 135 (265)
Q Consensus 57 ~~~~~~~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-~~ 135 (265)
|.+.+..+..+.++++|++|++++|.+++..|..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++ ..
T Consensus 36 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 115 (549)
T 2z81_A 36 NKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGV 115 (549)
T ss_dssp SCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCS
T ss_pred CccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccch
Confidence 44555556677889999999999999998888889999999999999999997666669999999999999999986 35
Q ss_pred chHhhhCCcCCEEEccCccCcccCC-hhccCCCCCCEEEcccCCCCCCCChhhhccC--------------------CCC
Q 024632 136 PPQLTLCAYLNVIDLHDNLLTGQIP-QQLGLLVRLSAFDVSNNKLSGPIPASLGNRS--------------------GNL 194 (265)
Q Consensus 136 p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~--------------------~~l 194 (265)
|..++.+++|++|++++|.+.+.+| ..+..+++|++|++++|.+++.+|..+..+. ..+
T Consensus 116 ~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l 195 (549)
T 2z81_A 116 TSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADIL 195 (549)
T ss_dssp SCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHST
T ss_pred hhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhc
Confidence 6788999999999999999555555 6789999999999999999988888776532 125
Q ss_pred CCCCCCCCCCCCC
Q 024632 195 PKFNASSFEGNKD 207 (265)
Q Consensus 195 ~~l~~~~~~~N~~ 207 (265)
+.++.+++++|..
T Consensus 196 ~~L~~L~L~~n~l 208 (549)
T 2z81_A 196 SSVRYLELRDTNL 208 (549)
T ss_dssp TTBSEEEEESCBC
T ss_pred ccccEEEccCCcc
Confidence 6677777777763
No 78
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.63 E-value=3.1e-16 Score=126.05 Aligned_cols=130 Identities=17% Similarity=0.289 Sum_probs=114.5
Q ss_pred ecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCE
Q 024632 68 CNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNV 147 (265)
Q Consensus 68 ~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 147 (265)
..++++++|++++|.++ .+| .+..+++|++|++++|.++ . +..+..+++|++|++++|.+++..|..+..+++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~-~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-N-YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-C-CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-c-chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 45678999999999999 667 6899999999999999776 3 347889999999999999999777888999999999
Q ss_pred EEccCccCcccCChhccCCCCCCEEEcccCC-CCCCCChhhhccCCCCCCCCCCCCCCCCC
Q 024632 148 IDLHDNLLTGQIPQQLGLLVRLSAFDVSNNK-LSGPIPASLGNRSGNLPKFNASSFEGNKD 207 (265)
Q Consensus 148 L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~-l~g~~p~~~~~~~~~l~~l~~~~~~~N~~ 207 (265)
|++++|++++..|..+..+++|+.|++++|. ++ .+| .+.. ++.|+.+++++|..
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~----l~~L~~L~l~~n~i 171 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKT----LPELKSLNIQFDGV 171 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGG----CSSCCEEECTTBCC
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcC----CCCCCEEECCCCCC
Confidence 9999999998888999999999999999998 65 566 5665 88899999999874
No 79
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.63 E-value=1.7e-15 Score=131.07 Aligned_cols=143 Identities=22% Similarity=0.231 Sum_probs=121.7
Q ss_pred CCceeecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhC
Q 024632 63 LPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLC 142 (265)
Q Consensus 63 ~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l 142 (265)
.+..+..+++|++|++++|.++ .+|..+. ++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+..+
T Consensus 163 ~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 239 (330)
T 1xku_A 163 ENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANT 239 (330)
T ss_dssp CTTGGGGCTTCCEEECCSSCCC-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGS
T ss_pred ChhhccCCCCcCEEECCCCccc-cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCC
Confidence 4556677899999999999998 5676554 899999999999997778889999999999999999998777789999
Q ss_pred CcCCEEEccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccC--CCCCCCCCCCCCCCCCCC
Q 024632 143 AYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRS--GNLPKFNASSFEGNKDLY 209 (265)
Q Consensus 143 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~--~~l~~l~~~~~~~N~~~c 209 (265)
++|++|++++|+++ .+|..+..+++|+.|++++|++++..+..+.... ...+.+..+++.+|+..+
T Consensus 240 ~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~ 307 (330)
T 1xku_A 240 PHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY 307 (330)
T ss_dssp TTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred CCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccc
Confidence 99999999999999 8899999999999999999999966555554321 124567788999998754
No 80
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.62 E-value=3.5e-16 Score=149.29 Aligned_cols=123 Identities=32% Similarity=0.458 Sum_probs=105.3
Q ss_pred CCceeecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhC
Q 024632 63 LPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLC 142 (265)
Q Consensus 63 ~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l 142 (265)
.++.+..++.|+.|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..+..+++|++|+|++|.++ .+|..++.+
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l 292 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSC 292 (727)
T ss_dssp ------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGG
T ss_pred ChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCC
Confidence 3556677888999999999998 78888889999999999999999 88988999999999999999999 788899999
Q ss_pred CcCCEEEccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhc
Q 024632 143 AYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGN 189 (265)
Q Consensus 143 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~ 189 (265)
++|++|+|++|.++ .+|..|+.+++|+.|+|++|.+++.+|..+..
T Consensus 293 ~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 338 (727)
T 4b8c_D 293 FQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTE 338 (727)
T ss_dssp TTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHH
T ss_pred CCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhh
Confidence 99999999999998 88888999999999999999999888877644
No 81
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.62 E-value=1.4e-15 Score=134.54 Aligned_cols=134 Identities=14% Similarity=0.142 Sum_probs=100.4
Q ss_pred cCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEE
Q 024632 69 NNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVI 148 (265)
Q Consensus 69 ~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 148 (265)
.+++++.|++++|.++...+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 35778888888888874333446778888888888888886556678888888888888888887777778888888888
Q ss_pred EccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCC
Q 024632 149 DLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNK 206 (265)
Q Consensus 149 ~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~ 206 (265)
++++|+++...+..+..+++|++|++++|.+++..|..+.+ ++.++.+++++|.
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~----l~~L~~L~l~~n~ 176 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQA----TTSLQNLQLSSNR 176 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSS----CTTCCEEECCSSC
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccC----CCCCCEEECCCCc
Confidence 88888888333334577888888888888888666666655 5666666666665
No 82
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.62 E-value=2.9e-15 Score=118.29 Aligned_cols=106 Identities=25% Similarity=0.255 Sum_probs=94.0
Q ss_pred EEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEEEccCc
Q 024632 74 YKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDN 153 (265)
Q Consensus 74 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 153 (265)
+.+++++|+++ .+|..+. ++|++|++++|.+++..|..|..+++|++|+|++|++++..+..+..+++|++|++++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 67999999997 7887664 89999999999999877888999999999999999999766666789999999999999
Q ss_pred cCcccCChhccCCCCCCEEEcccCCCCCC
Q 024632 154 LLTGQIPQQLGLLVRLSAFDVSNNKLSGP 182 (265)
Q Consensus 154 ~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ 182 (265)
++++..+..+..+++|+.|++++|++...
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcccc
Confidence 99965555689999999999999999854
No 83
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.62 E-value=1.4e-15 Score=147.35 Aligned_cols=135 Identities=20% Similarity=0.186 Sum_probs=121.4
Q ss_pred cCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCC-CCCcccCcccceeccccccCCCCCchHhhhCCcCCE
Q 024632 69 NNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSI-PADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNV 147 (265)
Q Consensus 69 ~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 147 (265)
-.+++++|+|++|.+++..|..+.++++|++|++++|...+.+ |..|..+++|++|+|++|.+++..|..+.++++|++
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 101 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFE 101 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCC
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCE
Confidence 4578999999999999888999999999999999999766666 778999999999999999999888999999999999
Q ss_pred EEccCccCcccCChh--ccCCCCCCEEEcccCCCCCCCC-hhhhccCCCCCCCCCCCCCCCCC
Q 024632 148 IDLHDNLLTGQIPQQ--LGLLVRLSAFDVSNNKLSGPIP-ASLGNRSGNLPKFNASSFEGNKD 207 (265)
Q Consensus 148 L~Ls~N~l~~~~p~~--~~~l~~L~~L~l~~N~l~g~~p-~~~~~~~~~l~~l~~~~~~~N~~ 207 (265)
|++++|.+++.+|.. +..+++|++|++++|.+++..| ..+.+ ++.|+.+++++|..
T Consensus 102 L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~----L~~L~~L~Ls~N~i 160 (844)
T 3j0a_A 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGK----LNSLKSIDFSSNQI 160 (844)
T ss_dssp EECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGT----CSSCCEEEEESSCC
T ss_pred eeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhh----CCCCCEEECCCCcC
Confidence 999999999877765 8999999999999999997655 46666 88899999999864
No 84
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.62 E-value=1.1e-15 Score=133.66 Aligned_cols=132 Identities=20% Similarity=0.231 Sum_probs=113.0
Q ss_pred CCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEEEc
Q 024632 71 GRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDL 150 (265)
Q Consensus 71 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 150 (265)
+++++|++++|.+++..+..+.++++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 131 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL 131 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence 58999999999999766668999999999999999999777788999999999999999999655556899999999999
Q ss_pred cCccCcccCCh--hccCCCCCCEEEcccC-CCCCCCChhhhccCCCCCCCCCCCCCCCCC
Q 024632 151 HDNLLTGQIPQ--QLGLLVRLSAFDVSNN-KLSGPIPASLGNRSGNLPKFNASSFEGNKD 207 (265)
Q Consensus 151 s~N~l~~~~p~--~~~~l~~L~~L~l~~N-~l~g~~p~~~~~~~~~l~~l~~~~~~~N~~ 207 (265)
++|+++ .+|. .+..+++|+.|++++| .+.+..|..+.+ ++.++.+++++|..
T Consensus 132 ~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~----l~~L~~L~l~~n~l 186 (353)
T 2z80_A 132 LGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAG----LTFLEELEIDASDL 186 (353)
T ss_dssp TTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTT----CCEEEEEEEEETTC
T ss_pred CCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccC----CCCCCEEECCCCCc
Confidence 999999 4554 7889999999999999 466555666665 67777777777753
No 85
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.61 E-value=2.1e-15 Score=130.63 Aligned_cols=142 Identities=18% Similarity=0.137 Sum_probs=67.4
Q ss_pred eeecCCCeEEEEeeCCCcc--ccCCccCcCC--------------------CCCCEEECcCCCCCCCCCCCcccCcccce
Q 024632 66 ATCNNGRIYKLSLTNLSLQ--GSISPYLSNC--------------------TNLQSLDLSSNALTGSIPADLQYLVNLAV 123 (265)
Q Consensus 66 ~~~~~~~l~~L~L~~n~l~--~~~p~~l~~l--------------------~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 123 (265)
.+..+++|++|++++|.++ +..+..+..+ ++|++|++++|.+++..+..+..+++|++
T Consensus 142 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~ 221 (332)
T 2ft3_A 142 VFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYR 221 (332)
T ss_dssp GGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSC
T ss_pred HhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCE
Confidence 3445556666666666653 2333333333 23444444444444333344445555555
Q ss_pred eccccccCCCCCchHhhhCCcCCEEEccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccC--CCCCCCCCCC
Q 024632 124 LNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRS--GNLPKFNASS 201 (265)
Q Consensus 124 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~--~~l~~l~~~~ 201 (265)
|++++|.+++..+..+..+++|++|++++|+++ .+|..+..+++|+.|++++|++++..+..+.... ...+.++.++
T Consensus 222 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~ 300 (332)
T 2ft3_A 222 LGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGIS 300 (332)
T ss_dssp CBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEE
T ss_pred EECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceE
Confidence 555555555444444555555555555555555 4455555555555555555555533333333211 1123344455
Q ss_pred CCCCCCC
Q 024632 202 FEGNKDL 208 (265)
Q Consensus 202 ~~~N~~~ 208 (265)
+.+|+..
T Consensus 301 l~~N~~~ 307 (332)
T 2ft3_A 301 LFNNPVP 307 (332)
T ss_dssp CCSSSSC
T ss_pred eecCccc
Confidence 5555543
No 86
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.61 E-value=7.5e-16 Score=146.97 Aligned_cols=115 Identities=29% Similarity=0.353 Sum_probs=101.4
Q ss_pred cCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEEEccCccCcccCChhccC
Q 024632 86 SISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGL 165 (265)
Q Consensus 86 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 165 (265)
..+..+..++.|+.|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..++.+++|++|+|++|.|+ .+|..++.
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 291 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGS 291 (727)
T ss_dssp -------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGG
T ss_pred cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcC
Confidence 34677889999999999999999 88888889999999999999999 89999999999999999999999 88999999
Q ss_pred CCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCCCC
Q 024632 166 LVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKDL 208 (265)
Q Consensus 166 l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~~~ 208 (265)
+++|++|+|++|.++ .+|..+++ ++.|+.+++++|+..
T Consensus 292 l~~L~~L~L~~N~l~-~lp~~~~~----l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 292 CFQLKYFYFFDNMVT-TLPWEFGN----LCNLQFLGVEGNPLE 329 (727)
T ss_dssp GTTCSEEECCSSCCC-CCCSSTTS----CTTCCCEECTTSCCC
T ss_pred CCCCCEEECCCCCCC-ccChhhhc----CCCccEEeCCCCccC
Confidence 999999999999997 88988777 888999999999854
No 87
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.61 E-value=1.7e-16 Score=144.90 Aligned_cols=133 Identities=22% Similarity=0.133 Sum_probs=82.8
Q ss_pred CCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcc-cCcccceeccccccCCCCCchHhhhCCcCCEE
Q 024632 70 NGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQ-YLVNLAVLNLSANRLAGEIPPQLTLCAYLNVI 148 (265)
Q Consensus 70 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 148 (265)
+++|++|++++|.+++..|..+..+++|+.|++++|.+++..|..+. .+++|++|+|++|.+++. |. ...+++|++|
T Consensus 119 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L 196 (487)
T 3oja_A 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTL 196 (487)
T ss_dssp CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEE
T ss_pred cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-cc-cccCCCCCEE
Confidence 34556666666666655555566666666666666666655555554 566666666666666633 22 2246667777
Q ss_pred EccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCCCCCC
Q 024632 149 DLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKDLYG 210 (265)
Q Consensus 149 ~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~~~c~ 210 (265)
++++|.+++ +|..+..+++|+.|++++|.+++ +|..+.. ++.+..+++++|+..|+
T Consensus 197 ~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~----l~~L~~L~l~~N~l~c~ 252 (487)
T 3oja_A 197 DLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRF----SQNLEHFDLRGNGFHCG 252 (487)
T ss_dssp ECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCC----CTTCCEEECTTCCBCHH
T ss_pred ECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc-cchhhcc----CCCCCEEEcCCCCCcCc
Confidence 777777764 33346667777777777777763 5655544 66777777888877764
No 88
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.61 E-value=7.4e-16 Score=143.04 Aligned_cols=108 Identities=27% Similarity=0.263 Sum_probs=89.3
Q ss_pred CeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEEEcc
Q 024632 72 RIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLH 151 (265)
Q Consensus 72 ~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 151 (265)
.++.|++++|.+++ +|. +..+++|+.|+|++|.++ .+|..++.+++|+.|+|++|.+++ +| .++.+++|++|+++
T Consensus 442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls 516 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLC 516 (567)
T ss_dssp TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECC
T ss_pred CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECC
Confidence 47788888888884 665 888888888888888888 788888888888888888888885 66 78888888888888
Q ss_pred CccCcccC-ChhccCCCCCCEEEcccCCCCCCCC
Q 024632 152 DNLLTGQI-PQQLGLLVRLSAFDVSNNKLSGPIP 184 (265)
Q Consensus 152 ~N~l~~~~-p~~~~~l~~L~~L~l~~N~l~g~~p 184 (265)
+|++++.. |..++.+++|+.|++++|++++..|
T Consensus 517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp SSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred CCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 88888665 8888888888888888888886544
No 89
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.61 E-value=9e-16 Score=126.89 Aligned_cols=134 Identities=22% Similarity=0.205 Sum_probs=66.7
Q ss_pred eeecCCCeEEEEeeCCC-ccccCCccCcCCCCCCEEECcC-CCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCC
Q 024632 66 ATCNNGRIYKLSLTNLS-LQGSISPYLSNCTNLQSLDLSS-NALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCA 143 (265)
Q Consensus 66 ~~~~~~~l~~L~L~~n~-l~~~~p~~l~~l~~L~~L~Ls~-N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 143 (265)
.+.++++|++|++++|. ++...+..+.++++|++|++++ |.+++..+..|..+++|++|++++|.+++ +|. +..++
T Consensus 50 ~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~ 127 (239)
T 2xwt_C 50 AFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVY 127 (239)
T ss_dssp TTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCC
T ss_pred HccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-ccccc
Confidence 33444555555555554 4433333455555555555555 55553333445555555555555555553 343 44555
Q ss_pred cCC---EEEccCc-cCcccCChhccCCCCCC-EEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCC
Q 024632 144 YLN---VIDLHDN-LLTGQIPQQLGLLVRLS-AFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNK 206 (265)
Q Consensus 144 ~L~---~L~Ls~N-~l~~~~p~~~~~l~~L~-~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~ 206 (265)
+|+ +|++++| .+++..+..|..+++|+ .|++++|.++ .+|..... .+.++.+++++|+
T Consensus 128 ~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~----~~~L~~L~L~~n~ 190 (239)
T 2xwt_C 128 STDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFN----GTKLDAVYLNKNK 190 (239)
T ss_dssp BCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTT----TCEEEEEECTTCT
T ss_pred ccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcC----CCCCCEEEcCCCC
Confidence 554 5555555 55543334455555555 5555555555 44443322 1344555555553
No 90
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.61 E-value=5.4e-16 Score=128.21 Aligned_cols=107 Identities=17% Similarity=0.208 Sum_probs=49.3
Q ss_pred CeEEEEeeCCCccccCCccCcCCCCCCEEECcCCC-CCCCCCCCcccCcccceecccc-ccCCCCCchHhhhCCcCCEEE
Q 024632 72 RIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNA-LTGSIPADLQYLVNLAVLNLSA-NRLAGEIPPQLTLCAYLNVID 149 (265)
Q Consensus 72 ~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~ 149 (265)
++++|++++|++++..+..+..+++|++|++++|. +++..+..|..+++|++|++++ |.+++..+..+..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 44455555555543333344445555555555553 4422223444445555555554 444433333444444555555
Q ss_pred ccCccCcccCChhccCCCCCC---EEEcccC-CCC
Q 024632 150 LHDNLLTGQIPQQLGLLVRLS---AFDVSNN-KLS 180 (265)
Q Consensus 150 Ls~N~l~~~~p~~~~~l~~L~---~L~l~~N-~l~ 180 (265)
+++|++++ +|. +..+++|+ .|++++| .++
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~ 144 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMT 144 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCC
T ss_pred CCCCCCcc-ccc-cccccccccccEEECCCCcchh
Confidence 55555442 343 44444444 5555555 444
No 91
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.60 E-value=4.4e-15 Score=128.62 Aligned_cols=86 Identities=26% Similarity=0.281 Sum_probs=40.3
Q ss_pred eecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCC
Q 024632 67 TCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLN 146 (265)
Q Consensus 67 ~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 146 (265)
+.++++|++|++++|.+++..|..+..+++|++|++++|.++ .+|..+. ++|++|++++|.+++..+..+..+++|+
T Consensus 74 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~ 150 (332)
T 2ft3_A 74 FKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMN 150 (332)
T ss_dssp TTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCC
T ss_pred hhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCC
Confidence 334444555555555554444444455555555555555544 3443332 3444444444444433333344455555
Q ss_pred EEEccCccC
Q 024632 147 VIDLHDNLL 155 (265)
Q Consensus 147 ~L~Ls~N~l 155 (265)
+|++++|.+
T Consensus 151 ~L~l~~n~l 159 (332)
T 2ft3_A 151 CIEMGGNPL 159 (332)
T ss_dssp EEECCSCCC
T ss_pred EEECCCCcc
Confidence 555555544
No 92
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.60 E-value=4.2e-15 Score=117.31 Aligned_cols=107 Identities=19% Similarity=0.196 Sum_probs=94.5
Q ss_pred CEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEEEccCccCcccCChhccCCCCCCEEEcccC
Q 024632 98 QSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNN 177 (265)
Q Consensus 98 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N 177 (265)
+.+++++|.++ .+|..+. ++|++|+|++|.+++..|..+..+++|++|+|++|++++..+..|..+++|+.|++++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 78999999997 8888765 89999999999999888889999999999999999999665566789999999999999
Q ss_pred CCCCCCChhhhccCCCCCCCCCCCCCCCCCCCCC
Q 024632 178 KLSGPIPASLGNRSGNLPKFNASSFEGNKDLYGY 211 (265)
Q Consensus 178 ~l~g~~p~~~~~~~~~l~~l~~~~~~~N~~~c~~ 211 (265)
++++..+..+.. ++.|+.+++++|++.|.+
T Consensus 92 ~l~~l~~~~~~~----l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 92 HLKSIPRGAFDN----LKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp CCCCCCTTTTTT----CTTCSEEECCSSCBCTTB
T ss_pred ccceeCHHHhcc----ccCCCEEEeCCCCccccc
Confidence 999655555666 889999999999998865
No 93
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.59 E-value=5.4e-16 Score=133.26 Aligned_cols=131 Identities=18% Similarity=0.159 Sum_probs=105.0
Q ss_pred cCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCC--C--CCCcccCcccceeccccccCCCCCch----Hhh
Q 024632 69 NNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGS--I--PADLQYLVNLAVLNLSANRLAGEIPP----QLT 140 (265)
Q Consensus 69 ~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~--~--p~~l~~l~~L~~L~Ls~N~l~~~~p~----~~~ 140 (265)
.+++|++|++++|.+.+..+..+..+++|++|++++|++.+. + +..+..+++|++|++++|.++ .++. .+.
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~ 221 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAA 221 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHH
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHh
Confidence 477899999999999877778888999999999999987642 2 233467889999999999987 4444 257
Q ss_pred hCCcCCEEEccCccCcccCChhccCC---CCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCCC
Q 024632 141 LCAYLNVIDLHDNLLTGQIPQQLGLL---VRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKD 207 (265)
Q Consensus 141 ~l~~L~~L~Ls~N~l~~~~p~~~~~l---~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~~ 207 (265)
.+++|++|++++|++++..|..+..+ ++|++|++++|+++ .+|..+. +.++.+++++|..
T Consensus 222 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~------~~L~~L~Ls~N~l 284 (310)
T 4glp_A 222 AGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP------AKLRVLDLSSNRL 284 (310)
T ss_dssp HTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC------SCCSCEECCSCCC
T ss_pred cCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc------CCCCEEECCCCcC
Confidence 78999999999999998778777776 69999999999998 6777542 5778888988874
No 94
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.59 E-value=2.1e-15 Score=129.59 Aligned_cols=148 Identities=16% Similarity=0.074 Sum_probs=113.3
Q ss_pred CCCCCCcee--ecCCCeEEEEeeCCCccccCC----ccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCC
Q 024632 59 FTSYLPGAT--CNNGRIYKLSLTNLSLQGSIS----PYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLA 132 (265)
Q Consensus 59 ~~~~~~~~~--~~~~~l~~L~L~~n~l~~~~p----~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 132 (265)
+.+..|..+ ..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|++.
T Consensus 103 l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 182 (310)
T 4glp_A 103 ITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGL 182 (310)
T ss_dssp CBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTC
T ss_pred eccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCc
Confidence 333445554 678889999999999986554 33557889999999999998777788889999999999999876
Q ss_pred CC--Cc--hHhhhCCcCCEEEccCccCcccCCh----hccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCC
Q 024632 133 GE--IP--PQLTLCAYLNVIDLHDNLLTGQIPQ----QLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEG 204 (265)
Q Consensus 133 ~~--~p--~~~~~l~~L~~L~Ls~N~l~~~~p~----~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~ 204 (265)
+. ++ ..+..+++|++|++++|+++ .+|. .+..+++|++|++++|++++..|..+..+. .++.|+.+++++
T Consensus 183 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~-~~~~L~~L~Ls~ 260 (310)
T 4glp_A 183 GERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCM-WSSALNSLNLSF 260 (310)
T ss_dssp HHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCC-CCTTCCCEECCS
T ss_pred cchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhcc-CcCcCCEEECCC
Confidence 42 21 22367889999999999997 3443 256788999999999999988788777632 136888888988
Q ss_pred CCCC
Q 024632 205 NKDL 208 (265)
Q Consensus 205 N~~~ 208 (265)
|...
T Consensus 261 N~l~ 264 (310)
T 4glp_A 261 AGLE 264 (310)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 8754
No 95
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.59 E-value=5.5e-16 Score=133.67 Aligned_cols=106 Identities=19% Similarity=0.183 Sum_probs=57.3
Q ss_pred CCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHh-hhCCcCCEEEccCccCcccCChhccCCCCCCEE
Q 024632 94 CTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQL-TLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAF 172 (265)
Q Consensus 94 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 172 (265)
+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+ ..+++|++|++++|.+++. |. ...+++|+.|
T Consensus 119 ~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L 196 (317)
T 3o53_A 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTL 196 (317)
T ss_dssp CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEE
T ss_pred cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEE
Confidence 4556666666666665444455566666666666666665444444 2455666666666665532 22 2235555556
Q ss_pred EcccCCCCCCCChhhhccCCCCCCCCCCCCCCCC
Q 024632 173 DVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNK 206 (265)
Q Consensus 173 ~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~ 206 (265)
++++|++++ +|..+.. ++.++.+++++|.
T Consensus 197 ~Ls~N~l~~-l~~~~~~----l~~L~~L~L~~N~ 225 (317)
T 3o53_A 197 DLSSNKLAF-MGPEFQS----AAGVTWISLRNNK 225 (317)
T ss_dssp ECCSSCCCE-ECGGGGG----GTTCSEEECTTSC
T ss_pred ECCCCcCCc-chhhhcc----cCcccEEECcCCc
Confidence 665555553 3333443 4445555555554
No 96
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.58 E-value=1.9e-15 Score=138.45 Aligned_cols=134 Identities=21% Similarity=0.258 Sum_probs=106.8
Q ss_pred ecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCC--CCCCCcccCcccceeccccccCCCCCchH-hhhCCc
Q 024632 68 CNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTG--SIPADLQYLVNLAVLNLSANRLAGEIPPQ-LTLCAY 144 (265)
Q Consensus 68 ~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~ 144 (265)
..+++|++|++++|.+++..|..+..+++|++|++++|++++ .+|..+..+++|++|++++|.+++.+|.. +..+++
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~ 400 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS 400 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence 356788888888888887778888888888888888888875 44566778888888888888888656654 667788
Q ss_pred CCEEEccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCCCC
Q 024632 145 LNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKDL 208 (265)
Q Consensus 145 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~~~ 208 (265)
|++|++++|++++..|..+. ++|+.|++++|+++ .+|..+.. ++.++.+++++|...
T Consensus 401 L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~----l~~L~~L~L~~N~l~ 457 (520)
T 2z7x_B 401 LLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVK----LEALQELNVASNQLK 457 (520)
T ss_dssp CCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGG----CTTCCEEECCSSCCC
T ss_pred CCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhc----CCCCCEEECCCCcCC
Confidence 88888888888877776554 68889999999988 78887776 888999999999754
No 97
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.58 E-value=5.1e-16 Score=141.69 Aligned_cols=148 Identities=22% Similarity=0.247 Sum_probs=121.1
Q ss_pred CCCCCCCCceeecCCCeEEEEeeCCCccccCCccCc-CCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCC
Q 024632 57 NGFTSYLPGATCNNGRIYKLSLTNLSLQGSISPYLS-NCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEI 135 (265)
Q Consensus 57 ~~~~~~~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 135 (265)
|.+.+..|..+..+++|++|++++|.+++..|..+. .+++|+.|+|++|.+++. |. ...+++|++|+|++|.+++ +
T Consensus 130 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~-~ 206 (487)
T 3oja_A 130 NKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF-M 206 (487)
T ss_dssp SCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE-E
T ss_pred CCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-cc-cccCCCCCEEECCCCCCCC-C
Confidence 445555566677889999999999999988888776 799999999999999954 43 3469999999999999996 4
Q ss_pred chHhhhCCcCCEEEccCccCcccCChhccCCCCCCEEEcccCCCC-CCCChhhhccCCCCCCCCCCCCC-------CCCC
Q 024632 136 PPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLS-GPIPASLGNRSGNLPKFNASSFE-------GNKD 207 (265)
Q Consensus 136 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~-g~~p~~~~~~~~~l~~l~~~~~~-------~N~~ 207 (265)
|..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|.+. +.+|..+.. ++.+..++.. .|+.
T Consensus 207 ~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~----l~~L~~l~~~~~~~~~~~~~~ 281 (487)
T 3oja_A 207 GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK----NQRVQTVAKQTVKKLTGQNEE 281 (487)
T ss_dssp CGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCBCHHHHHHHHTT----CHHHHHHHHHHHHHHTSSSSC
T ss_pred CHhHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCCcCcchHHHHHh----CCCCcEEeccccccccCCCcc
Confidence 555999999999999999999 47888999999999999999998 566666655 5555555554 6777
Q ss_pred CCCCC
Q 024632 208 LYGYP 212 (265)
Q Consensus 208 ~c~~~ 212 (265)
.|.++
T Consensus 282 ~c~~~ 286 (487)
T 3oja_A 282 ECTVP 286 (487)
T ss_dssp CCSST
T ss_pred cccCC
Confidence 77764
No 98
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.58 E-value=1.9e-15 Score=115.88 Aligned_cols=114 Identities=26% Similarity=0.274 Sum_probs=99.7
Q ss_pred CCCCceeecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCC-CchHh
Q 024632 61 SYLPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGE-IPPQL 139 (265)
Q Consensus 61 ~~~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~p~~~ 139 (265)
+..|+.++.++++++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|++++|.+++. .+..+
T Consensus 32 ~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~ 109 (149)
T 2je0_A 32 GKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPL 109 (149)
T ss_dssp TBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGG
T ss_pred hHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHH
Confidence 35677778899999999999999965 7789999999999999999977888788899999999999999953 34789
Q ss_pred hhCCcCCEEEccCccCcccCC---hhccCCCCCCEEEccc
Q 024632 140 TLCAYLNVIDLHDNLLTGQIP---QQLGLLVRLSAFDVSN 176 (265)
Q Consensus 140 ~~l~~L~~L~Ls~N~l~~~~p---~~~~~l~~L~~L~l~~ 176 (265)
..+++|++|++++|.+++..+ ..+..+++|+.|++++
T Consensus 110 ~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 110 KKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp GGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred hhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 999999999999999996655 4789999999999864
No 99
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.56 E-value=1.9e-14 Score=125.03 Aligned_cols=126 Identities=27% Similarity=0.434 Sum_probs=58.6
Q ss_pred cCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEE
Q 024632 69 NNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVI 148 (265)
Q Consensus 69 ~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 148 (265)
.+++|++|++++|.+++ ++. +..+++|++|++++|.+++ + +.+..+++|++|++++|.+++ + +.+..+++|+.|
T Consensus 219 ~~~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L 292 (347)
T 4fmz_A 219 NMTRLNSLKIGNNKITD-LSP-LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISD-I-SVLNNLSQLNSL 292 (347)
T ss_dssp GCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEE
T ss_pred cCCcCCEEEccCCccCC-Ccc-hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCC-C-hhhcCCCCCCEE
Confidence 34444455555554442 222 4444555555555555442 2 234444555555555555542 2 234445555555
Q ss_pred EccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCC
Q 024632 149 DLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNK 206 (265)
Q Consensus 149 ~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~ 206 (265)
++++|.+++..|..+..+++|+.|++++|++++..| +.. ++.++.+++++|+
T Consensus 293 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~----l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 293 FLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LAS----LSKMDSADFANQV 344 (347)
T ss_dssp ECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGG----CTTCSEESSSCC-
T ss_pred ECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhh----hhccceeehhhhc
Confidence 555555554444445555555555555555543333 222 4444555555543
No 100
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.56 E-value=1.6e-14 Score=123.13 Aligned_cols=105 Identities=28% Similarity=0.325 Sum_probs=48.4
Q ss_pred ecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCE
Q 024632 68 CNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNV 147 (265)
Q Consensus 68 ~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 147 (265)
..+++|++|++++|.+++. +. +..+++|++|++++|.+++ +| .+..+++|++|++++|.+++ + +.+..+++|++
T Consensus 65 ~~l~~L~~L~L~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~ 138 (291)
T 1h6t_A 65 QYLPNVTKLFLNGNKLTDI-KP-LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLES 138 (291)
T ss_dssp GGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCE
T ss_pred hcCCCCCEEEccCCccCCC-cc-cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCC-C-hhhcCCCCCCE
Confidence 3445555555555555532 22 4455555555555555542 22 24444555555555555442 2 23444444444
Q ss_pred EEccCccCcccCChhccCCCCCCEEEcccCCCC
Q 024632 148 IDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLS 180 (265)
Q Consensus 148 L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~ 180 (265)
|++++|++++. ..+..+++|+.|++++|.++
T Consensus 139 L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~ 169 (291)
T 1h6t_A 139 LYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS 169 (291)
T ss_dssp EECCSSCCCCC--GGGGGCTTCSEEECCSSCCC
T ss_pred EEccCCcCCcc--hhhccCCCCCEEEccCCccc
Confidence 44444444422 23444444444444444444
No 101
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.56 E-value=1.3e-14 Score=123.68 Aligned_cols=127 Identities=25% Similarity=0.340 Sum_probs=110.0
Q ss_pred eecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCC
Q 024632 67 TCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLN 146 (265)
Q Consensus 67 ~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 146 (265)
+..+++|++|++++|.+++ ++ .+..+++|++|++++|.+++ + +.+..+++|+.|++++|.+++. ..+..+++|+
T Consensus 86 l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~ 159 (291)
T 1h6t_A 86 LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLD 159 (291)
T ss_dssp GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCS
T ss_pred cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCC-C-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCC
Confidence 6778999999999999985 44 48999999999999999995 4 4688999999999999999954 6789999999
Q ss_pred EEEccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCCC
Q 024632 147 VIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKD 207 (265)
Q Consensus 147 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~~ 207 (265)
+|++++|++++..| +..+++|+.|++++|.+++ +|. +.. ++.|+.+++++|+.
T Consensus 160 ~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~~-l~~----l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 160 TLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LRA-LAG----LKNLDVLELFSQEC 212 (291)
T ss_dssp EEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CGG-GTT----CTTCSEEEEEEEEE
T ss_pred EEEccCCccccchh--hcCCCccCEEECCCCcCCC-Chh-hcc----CCCCCEEECcCCcc
Confidence 99999999996544 8999999999999999985 453 544 88899999999874
No 102
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.55 E-value=9.3e-15 Score=122.86 Aligned_cols=129 Identities=25% Similarity=0.350 Sum_probs=105.9
Q ss_pred eeecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcC
Q 024632 66 ATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYL 145 (265)
Q Consensus 66 ~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 145 (265)
.+..+++|++|++++|.+++ ++. +..+++|++|++++|++++ +|... . ++|++|++++|.+++ ++ .+..+++|
T Consensus 58 ~l~~l~~L~~L~L~~N~i~~-~~~-l~~l~~L~~L~L~~N~l~~-l~~~~-~-~~L~~L~L~~N~l~~-~~-~l~~l~~L 130 (263)
T 1xeu_A 58 GMQFFTNLKELHLSHNQISD-LSP-LKDLTKLEELSVNRNRLKN-LNGIP-S-ACLSRLFLDNNELRD-TD-SLIHLKNL 130 (263)
T ss_dssp TGGGCTTCCEEECCSSCCCC-CGG-GTTCSSCCEEECCSSCCSC-CTTCC-C-SSCCEEECCSSCCSB-SG-GGTTCTTC
T ss_pred HHhhCCCCCEEECCCCccCC-Chh-hccCCCCCEEECCCCccCC-cCccc-c-CcccEEEccCCccCC-Ch-hhcCcccc
Confidence 45678999999999999985 444 8899999999999999984 55433 3 899999999999985 44 58899999
Q ss_pred CEEEccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCCCCC
Q 024632 146 NVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKDLY 209 (265)
Q Consensus 146 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~~~c 209 (265)
++|++++|++++ +| .+..+++|+.|++++|++++. ..+.. ++.++.+++++|+..+
T Consensus 131 ~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~~--~~l~~----l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 131 EILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITNT--GGLTR----LKKVNWIDLTGQKCVN 186 (263)
T ss_dssp CEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCBC--TTSTT----CCCCCEEEEEEEEEEC
T ss_pred cEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcch--HHhcc----CCCCCEEeCCCCcccC
Confidence 999999999995 45 688899999999999999865 44444 7888888899887544
No 103
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.55 E-value=9.1e-15 Score=135.44 Aligned_cols=127 Identities=24% Similarity=0.205 Sum_probs=109.0
Q ss_pred CCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEEEc
Q 024632 71 GRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDL 150 (265)
Q Consensus 71 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 150 (265)
+++++|++++|.+++..|..+.++++|++|++++|.+++..|..|..+++|++|++++|.++ .+|.. .+++|++|++
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L 128 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDL 128 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEEC
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEEC
Confidence 78999999999999777788999999999999999999777888999999999999999998 67766 7999999999
Q ss_pred cCccCcc-cCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCC--CCCCCCCCCC
Q 024632 151 HDNLLTG-QIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKF--NASSFEGNKD 207 (265)
Q Consensus 151 s~N~l~~-~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l--~~~~~~~N~~ 207 (265)
++|++++ .+|..++.+++|++|++++|.+++. .+.. ++.+ +.+++++|..
T Consensus 129 s~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~----l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLP----VAHLHLSCILLDLVSY 181 (562)
T ss_dssp CSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGG----GTTSCEEEEEEEESSC
T ss_pred CCCCccccCchHhhcccCcccEEecCCCccccC---chhh----hhhceeeEEEeecccc
Confidence 9999986 4568899999999999999999853 3333 3334 7888888865
No 104
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.55 E-value=4.2e-14 Score=121.48 Aligned_cols=126 Identities=25% Similarity=0.407 Sum_probs=66.1
Q ss_pred eecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCC
Q 024632 67 TCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLN 146 (265)
Q Consensus 67 ~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 146 (265)
+..+++|++|++++|.+++ ++ .+..+++|++|++++|.+++ ++. +..+++|++|++++|.+++. +. +..+++|+
T Consensus 81 ~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~ 154 (308)
T 1h6u_A 81 LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLDLTSTQITD-VTP-LAGLSNLQVLYLDLNQITNI-SP-LAGLTNLQ 154 (308)
T ss_dssp GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEECTTSCCCC-CGG-GTTCTTCCEEECCSSCCCCC-GG-GGGCTTCC
T ss_pred HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEEECCCCCCCC-chh-hcCCCCCCEEECCCCccCcC-cc-ccCCCCcc
Confidence 3445555555555555553 22 35555555666666555553 332 55555666666666655532 22 55555666
Q ss_pred EEEccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCC
Q 024632 147 VIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNK 206 (265)
Q Consensus 147 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~ 206 (265)
+|++++|++++ ++. +..+++|+.|++++|.+++. |. +.. ++.++.+++++|.
T Consensus 155 ~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~-~~-l~~----l~~L~~L~L~~N~ 206 (308)
T 1h6u_A 155 YLSIGNAQVSD-LTP-LANLSKLTTLKADDNKISDI-SP-LAS----LPNLIEVHLKNNQ 206 (308)
T ss_dssp EEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCC-GG-GGG----CTTCCEEECTTSC
T ss_pred EEEccCCcCCC-Chh-hcCCCCCCEEECCCCccCcC-hh-hcC----CCCCCEEEccCCc
Confidence 66666666553 332 55556666666666665532 22 332 4455555555554
No 105
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.54 E-value=7.7e-16 Score=132.75 Aligned_cols=133 Identities=22% Similarity=0.138 Sum_probs=104.8
Q ss_pred CCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCc-ccCcccceeccccccCCCCCchHhhhCCcCCEE
Q 024632 70 NGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADL-QYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVI 148 (265)
Q Consensus 70 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 148 (265)
+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+ ..+++|++|++++|.+++. |. ...+++|++|
T Consensus 119 ~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L 196 (317)
T 3o53_A 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTL 196 (317)
T ss_dssp CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEE
T ss_pred cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEE
Confidence 5778899999998887667778888889999999998886656655 3678899999999988743 33 3347888999
Q ss_pred EccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCCCCCC
Q 024632 149 DLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKDLYG 210 (265)
Q Consensus 149 ~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~~~c~ 210 (265)
++++|++++ +|..+..+++|+.|++++|+++ .+|..+.. ++.++.+++++|+..|+
T Consensus 197 ~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~----l~~L~~L~l~~N~~~~~ 252 (317)
T 3o53_A 197 DLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRF----SQNLEHFDLRGNGFHCG 252 (317)
T ss_dssp ECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCC----CTTCCEEECTTCCCBHH
T ss_pred ECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhc----CCCCCEEEccCCCccCc
Confidence 999998884 5555888888999999999888 56776655 77888888888888764
No 106
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.53 E-value=3.7e-14 Score=121.82 Aligned_cols=127 Identities=25% Similarity=0.387 Sum_probs=108.2
Q ss_pred eecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCC
Q 024632 67 TCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLN 146 (265)
Q Consensus 67 ~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 146 (265)
+..+++|++|++++|.+++ ++. +..+++|++|++++|.+++ ++ .+..+++|++|++++|.+++ ++. +..+++|+
T Consensus 59 ~~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~ 132 (308)
T 1h6u_A 59 VQYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLDLTSTQITD-VTP-LAGLSNLQ 132 (308)
T ss_dssp GGGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEECTTSCCCC-CGG-GTTCTTCC
T ss_pred hhccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEEECCCCCCCC-chh-hcCCCCCC
Confidence 5678999999999999985 444 8999999999999999984 44 68899999999999999985 454 88999999
Q ss_pred EEEccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCCC
Q 024632 147 VIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKD 207 (265)
Q Consensus 147 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~~ 207 (265)
+|++++|.+++. +. +..+++|+.|++++|.+++ ++. +.. ++.|+.+++++|..
T Consensus 133 ~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~----l~~L~~L~l~~n~l 185 (308)
T 1h6u_A 133 VLYLDLNQITNI-SP-LAGLTNLQYLSIGNAQVSD-LTP-LAN----LSKLTTLKADDNKI 185 (308)
T ss_dssp EEECCSSCCCCC-GG-GGGCTTCCEEECCSSCCCC-CGG-GTT----CTTCCEEECCSSCC
T ss_pred EEECCCCccCcC-cc-ccCCCCccEEEccCCcCCC-Chh-hcC----CCCCCEEECCCCcc
Confidence 999999999954 44 8899999999999999985 444 544 88899999999864
No 107
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.51 E-value=6.8e-14 Score=130.74 Aligned_cols=126 Identities=25% Similarity=0.347 Sum_probs=69.7
Q ss_pred eecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCC
Q 024632 67 TCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLN 146 (265)
Q Consensus 67 ~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 146 (265)
++.+++|+.|+|++|.+.+ +| .+..+++|+.|+|++|.+.+ + +.+..+++|+.|+|++|.+++. ..+..+++|+
T Consensus 83 l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~ 156 (605)
T 1m9s_A 83 LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLD 156 (605)
T ss_dssp GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCS
T ss_pred hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCC
Confidence 3344555555555555542 22 35555555555555555552 2 2355555666666666666532 3455666666
Q ss_pred EEEccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCC
Q 024632 147 VIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNK 206 (265)
Q Consensus 147 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~ 206 (265)
.|+|++|.+++..| +..+++|+.|++++|++++ +| .+.. ++.|+.+++++|+
T Consensus 157 ~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~-l~-~l~~----l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 157 TLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAG----LKNLDVLELFSQE 208 (605)
T ss_dssp EEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTT----CTTCSEEECCSEE
T ss_pred EEECcCCcCCCchh--hccCCCCCEEECcCCCCCC-Ch-HHcc----CCCCCEEEccCCc
Confidence 66666666664433 5666666666666666654 22 2333 6667777777765
No 108
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.51 E-value=6.9e-14 Score=130.71 Aligned_cols=128 Identities=26% Similarity=0.299 Sum_probs=109.2
Q ss_pred eeecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcC
Q 024632 66 ATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYL 145 (265)
Q Consensus 66 ~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 145 (265)
.+..+++|+.|+|++|.+.+..| +..+++|+.|+|++|.+++ +| .+..+++|+.|+|++|.+++ + +.+..+++|
T Consensus 60 ~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L 133 (605)
T 1m9s_A 60 GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQL 133 (605)
T ss_dssp TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCC-C-GGGGGCTTC
T ss_pred HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCC-C-ccccCCCcc
Confidence 35678999999999999985443 8899999999999999984 44 68899999999999999985 4 458899999
Q ss_pred CEEEccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCCC
Q 024632 146 NVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKD 207 (265)
Q Consensus 146 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~~ 207 (265)
+.|+|++|.+++. ..+..+++|+.|++++|.+++..| +.. ++.|+.+++++|..
T Consensus 134 ~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~----l~~L~~L~Ls~N~i 187 (605)
T 1m9s_A 134 ESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAG----LTKLQNLYLSKNHI 187 (605)
T ss_dssp SEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTT----CTTCCEEECCSSCC
T ss_pred CEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hcc----CCCCCEEECcCCCC
Confidence 9999999999954 568899999999999999997655 555 78888999998864
No 109
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.51 E-value=5.2e-14 Score=118.25 Aligned_cols=128 Identities=28% Similarity=0.331 Sum_probs=108.0
Q ss_pred eecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCC
Q 024632 67 TCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLN 146 (265)
Q Consensus 67 ~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 146 (265)
+..+++|++|++++|.++ .++ .+..+++|++|++++|.+++ ++. +..+++|++|++++|.+++ +|.. .. ++|+
T Consensus 37 ~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~-~~~-l~~l~~L~~L~L~~N~l~~-l~~~-~~-~~L~ 109 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISD-LSP-LKDLTKLEELSVNRNRLKN-LNGI-PS-ACLS 109 (263)
T ss_dssp HHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCSSCCEEECCSSCCSC-CTTC-CC-SSCC
T ss_pred hhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCC-Chh-hccCCCCCEEECCCCccCC-cCcc-cc-Cccc
Confidence 456789999999999998 566 68899999999999999995 554 8999999999999999995 4543 33 8999
Q ss_pred EEEccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCCCCC
Q 024632 147 VIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKDLY 209 (265)
Q Consensus 147 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~~~c 209 (265)
+|++++|++++ +| .+..+++|+.|++++|++++ +| .+.. ++.|+.+++++|....
T Consensus 110 ~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~-~~-~l~~----l~~L~~L~L~~N~i~~ 164 (263)
T 1xeu_A 110 RLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKS-IV-MLGF----LSKLEVLDLHGNEITN 164 (263)
T ss_dssp EEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCB-CG-GGGG----CTTCCEEECTTSCCCB
T ss_pred EEEccCCccCC-Ch-hhcCcccccEEECCCCcCCC-Ch-HHcc----CCCCCEEECCCCcCcc
Confidence 99999999995 44 58999999999999999985 44 4555 8889999999997543
No 110
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.50 E-value=2e-16 Score=127.27 Aligned_cols=128 Identities=22% Similarity=0.235 Sum_probs=108.8
Q ss_pred ceeecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCc
Q 024632 65 GATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAY 144 (265)
Q Consensus 65 ~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 144 (265)
..++.+++|++|++++|.+++ +| .+..+++|++|++++|.++ .+|..+..+++|++|++++|.+++ +| .+..+++
T Consensus 42 ~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~ 116 (198)
T 1ds9_A 42 ATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVN 116 (198)
T ss_dssp HHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHH
T ss_pred HHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCC
Confidence 377789999999999999995 77 8899999999999999999 788878888999999999999995 55 6889999
Q ss_pred CCEEEccCccCcccCC-hhccCCCCCCEEEcccCCCCCCCChh----------hhccCCCCCCCCCCC
Q 024632 145 LNVIDLHDNLLTGQIP-QQLGLLVRLSAFDVSNNKLSGPIPAS----------LGNRSGNLPKFNASS 201 (265)
Q Consensus 145 L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~l~~N~l~g~~p~~----------~~~~~~~l~~l~~~~ 201 (265)
|++|++++|++++..+ ..+..+++|++|++++|++++.+|.. +.. ++.++.++
T Consensus 117 L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~----l~~L~~Ld 180 (198)
T 1ds9_A 117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKR----LPNLKKLD 180 (198)
T ss_dssp SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHH----CSSCSEEC
T ss_pred CCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHh----CCCcEEEC
Confidence 9999999999994322 47889999999999999998776642 444 66776654
No 111
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.48 E-value=7e-14 Score=121.69 Aligned_cols=104 Identities=24% Similarity=0.201 Sum_probs=89.7
Q ss_pred EEeeCC-CccccCCccCcCCCCCCEEECcC-CCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEEEccCc
Q 024632 76 LSLTNL-SLQGSISPYLSNCTNLQSLDLSS-NALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDN 153 (265)
Q Consensus 76 L~L~~n-~l~~~~p~~l~~l~~L~~L~Ls~-N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 153 (265)
++.+++ +++ .+|. +..+++|++|+|++ |.+++..+..|..+++|+.|+|++|+|++..|..|.++++|+.|+|++|
T Consensus 13 v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 13 LRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp EECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 467777 788 5888 99999999999996 9999666678999999999999999999888889999999999999999
Q ss_pred cCcccCChhccCCCCCCEEEcccCCCCCC
Q 024632 154 LLTGQIPQQLGLLVRLSAFDVSNNKLSGP 182 (265)
Q Consensus 154 ~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ 182 (265)
+|++..+..+..++ |+.|++.+|++...
T Consensus 91 ~l~~~~~~~~~~~~-L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 91 ALESLSWKTVQGLS-LQELVLSGNPLHCS 118 (347)
T ss_dssp CCSCCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred ccceeCHHHcccCC-ceEEEeeCCCccCC
Confidence 99965555555555 99999999999754
No 112
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.48 E-value=6.3e-14 Score=121.98 Aligned_cols=108 Identities=20% Similarity=0.154 Sum_probs=93.8
Q ss_pred CEEECcCC-CCCCCCCCCcccCcccceecccc-ccCCCCCchHhhhCCcCCEEEccCccCcccCChhccCCCCCCEEEcc
Q 024632 98 QSLDLSSN-ALTGSIPADLQYLVNLAVLNLSA-NRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVS 175 (265)
Q Consensus 98 ~~L~Ls~N-~l~~~~p~~l~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~ 175 (265)
..++.+++ .++ .+|. +..+++|+.|+|++ |.+++..+..|.++++|+.|+|++|+|++..|..|..+++|+.|+|+
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 35688888 898 6888 99999999999996 99998777889999999999999999999889999999999999999
Q ss_pred cCCCCCCCChhhhccCCCCCCCCCCCCCCCCCCCCCC
Q 024632 176 NNKLSGPIPASLGNRSGNLPKFNASSFEGNKDLYGYP 212 (265)
Q Consensus 176 ~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~~~c~~~ 212 (265)
+|+|++..|..+.. ++ |+.+++.+|++.|.|.
T Consensus 89 ~N~l~~~~~~~~~~----~~-L~~l~l~~N~~~c~c~ 120 (347)
T 2ifg_A 89 FNALESLSWKTVQG----LS-LQELVLSGNPLHCSCA 120 (347)
T ss_dssp SSCCSCCCSTTTCS----CC-CCEEECCSSCCCCCGG
T ss_pred CCccceeCHHHccc----CC-ceEEEeeCCCccCCCc
Confidence 99999554444443 33 8889999999999764
No 113
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.48 E-value=1.2e-13 Score=125.14 Aligned_cols=124 Identities=23% Similarity=0.325 Sum_probs=65.5
Q ss_pred CCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEEE
Q 024632 70 NGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVID 149 (265)
Q Consensus 70 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 149 (265)
+++|++|++++|.+++. +. +..+++|+.|++++|.+++..+ +..+++|+.|++++|.+++..| +..+++|+.|+
T Consensus 264 l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~ 337 (466)
T 1o6v_A 264 LTKLTELKLGANQISNI-SP-LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLF 337 (466)
T ss_dssp CTTCSEEECCSSCCCCC-GG-GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEE
T ss_pred CCCCCEEECCCCccCcc-cc-ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeE
Confidence 34444444444444422 21 4444555555555555543221 4455555555555555554333 45555666666
Q ss_pred ccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCCC
Q 024632 150 LHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKD 207 (265)
Q Consensus 150 Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~~ 207 (265)
+++|.+++. ..+..+++|+.|++++|++++..| +.. ++.++.+++++|++
T Consensus 338 l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~----l~~L~~L~l~~n~~ 387 (466)
T 1o6v_A 338 FYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LAN----LTRITQLGLNDQAW 387 (466)
T ss_dssp CCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTT----CTTCCEEECCCEEE
T ss_pred CCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhc----CCCCCEEeccCCcc
Confidence 666666533 245666666666666666665554 333 56666666666654
No 114
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.47 E-value=1.8e-13 Score=126.85 Aligned_cols=96 Identities=31% Similarity=0.410 Sum_probs=48.5
Q ss_pred cCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEE
Q 024632 69 NNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVI 148 (265)
Q Consensus 69 ~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 148 (265)
.+++|++|++++|.+++ +|. +.. +|++|++++|.+++ +|. .+++|++|++++|.+++ +|. .+++|++|
T Consensus 98 ~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L 165 (571)
T 3cvr_A 98 LPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVL 165 (571)
T ss_dssp CCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEE
T ss_pred ccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEE
Confidence 35667777777777764 555 443 56666666666653 444 34555555555555553 333 23444444
Q ss_pred EccCccCcccCChhccCCCCCCEEEcccCCCC
Q 024632 149 DLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLS 180 (265)
Q Consensus 149 ~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~ 180 (265)
++++|++++ +|. +. ++|+.|++++|.++
T Consensus 166 ~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~ 193 (571)
T 3cvr_A 166 SVRNNQLTF-LPE-LP--ESLEALDVSTNLLE 193 (571)
T ss_dssp ECCSSCCSC-CCC-CC--TTCCEEECCSSCCS
T ss_pred ECCCCCCCC-cch-hh--CCCCEEECcCCCCC
Confidence 444444442 333 22 34444444444443
No 115
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.47 E-value=7.4e-14 Score=110.06 Aligned_cols=113 Identities=17% Similarity=0.167 Sum_probs=96.2
Q ss_pred CCceeecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCC-cccCcccceeccccccCCCCCch--Hh
Q 024632 63 LPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPAD-LQYLVNLAVLNLSANRLAGEIPP--QL 139 (265)
Q Consensus 63 ~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~~~p~--~~ 139 (265)
.++.....++|++|++++|.+++. ..+..+++|++|++++|.+++ +|.. +..+++|++|++++|.++ .+|. .+
T Consensus 34 i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l 109 (176)
T 1a9n_A 34 IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICR-IGEGLDQALPDLTELILTNNSLV-ELGDLDPL 109 (176)
T ss_dssp CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCE-ECSCHHHHCTTCCEEECCSCCCC-CGGGGGGG
T ss_pred hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccc-cCcchhhcCCCCCEEECCCCcCC-cchhhHhh
Confidence 344332344999999999999964 678999999999999999994 5544 489999999999999997 6776 78
Q ss_pred hhCCcCCEEEccCccCcccCChh----ccCCCCCCEEEcccCCCC
Q 024632 140 TLCAYLNVIDLHDNLLTGQIPQQ----LGLLVRLSAFDVSNNKLS 180 (265)
Q Consensus 140 ~~l~~L~~L~Ls~N~l~~~~p~~----~~~l~~L~~L~l~~N~l~ 180 (265)
..+++|++|++++|.++ .+|.. +..+++|+.||++.|...
T Consensus 110 ~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 110 ASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp GGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred hcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 99999999999999998 66764 889999999999999875
No 116
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.46 E-value=2.3e-13 Score=118.20 Aligned_cols=128 Identities=20% Similarity=0.285 Sum_probs=85.2
Q ss_pred CCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEEE
Q 024632 70 NGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVID 149 (265)
Q Consensus 70 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 149 (265)
++++++|++++|.+.+.. . +..+++|++|++++|.+++ ++. +..+++|++|++++|.+++ + +.+..+++|++|+
T Consensus 198 l~~L~~L~l~~n~l~~~~-~-~~~~~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~ 271 (347)
T 4fmz_A 198 LTSLHYFTAYVNQITDIT-P-VANMTRLNSLKIGNNKITD-LSP-LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLN 271 (347)
T ss_dssp CTTCCEEECCSSCCCCCG-G-GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEE
T ss_pred CCccceeecccCCCCCCc-h-hhcCCcCCEEEccCCccCC-Ccc-hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEE
Confidence 344444444444444221 1 5566677777777777763 333 6677777777777777764 3 3567777788888
Q ss_pred ccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCCCCC
Q 024632 150 LHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKDLY 209 (265)
Q Consensus 150 Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~~~c 209 (265)
+++|.+++ +| .+..+++|+.|++++|++++..|..+.+ ++.++.+++++|+...
T Consensus 272 l~~n~l~~-~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~----l~~L~~L~L~~n~l~~ 325 (347)
T 4fmz_A 272 VGSNQISD-IS-VLNNLSQLNSLFLNNNQLGNEDMEVIGG----LTNLTTLFLSQNHITD 325 (347)
T ss_dssp CCSSCCCC-CG-GGGGCTTCSEEECCSSCCCGGGHHHHHT----CTTCSEEECCSSSCCC
T ss_pred ccCCccCC-Ch-hhcCCCCCCEEECcCCcCCCcChhHhhc----cccCCEEEccCCcccc
Confidence 88887774 33 4677778888888888887777777766 7778888888887543
No 117
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.45 E-value=3.2e-13 Score=122.30 Aligned_cols=125 Identities=29% Similarity=0.316 Sum_probs=69.2
Q ss_pred cCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEE
Q 024632 69 NNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVI 148 (265)
Q Consensus 69 ~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 148 (265)
.+++|++|++++|.+++..+ +..+++|++|++++|.+++ ++. +..+++|+.|++++|.+++..+ +..+++|+.|
T Consensus 241 ~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L 314 (466)
T 1o6v_A 241 SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN-ISP-LAGLTALTNLELNENQLEDISP--ISNLKNLTYL 314 (466)
T ss_dssp GCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCC-CGG-GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEE
T ss_pred cCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCc-ccc-ccCCCccCeEEcCCCcccCchh--hcCCCCCCEE
Confidence 34455555555555553222 4555555555555555553 222 5555666666666666653322 5556666666
Q ss_pred EccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCCC
Q 024632 149 DLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKD 207 (265)
Q Consensus 149 ~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~~ 207 (265)
++++|++++..| +..+++|+.|++++|++++. ..+.+ ++.++.+++++|..
T Consensus 315 ~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~----l~~L~~L~l~~n~l 365 (466)
T 1o6v_A 315 TLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLAN----LTNINWLSAGHNQI 365 (466)
T ss_dssp ECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTT----CTTCCEEECCSSCC
T ss_pred ECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhcc----CCCCCEEeCCCCcc
Confidence 666666664433 45566666666666666643 23333 66667777777764
No 118
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.45 E-value=4.6e-16 Score=125.18 Aligned_cols=130 Identities=25% Similarity=0.295 Sum_probs=106.9
Q ss_pred CCeEEEEeeCCCccccCCc------cCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCc
Q 024632 71 GRIYKLSLTNLSLQGSISP------YLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAY 144 (265)
Q Consensus 71 ~~l~~L~L~~n~l~~~~p~------~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 144 (265)
..++.++++.+.+.|..|. .+..+++|++|++++|.+++ +| .+..+++|++|++++|.++ .+|..+..+++
T Consensus 18 ~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~ 94 (198)
T 1ds9_A 18 KSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADT 94 (198)
T ss_dssp TCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHH
T ss_pred ccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCc
Confidence 4455555555666655554 88999999999999999995 77 8899999999999999999 78888888899
Q ss_pred CCEEEccCccCcccCChhccCCCCCCEEEcccCCCCCCCC-hhhhccCCCCCCCCCCCCCCCCCCC
Q 024632 145 LNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIP-ASLGNRSGNLPKFNASSFEGNKDLY 209 (265)
Q Consensus 145 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p-~~~~~~~~~l~~l~~~~~~~N~~~c 209 (265)
|++|++++|++++ +| .+..+++|+.|++++|++++..+ ..+.. ++.++.+++++|+..+
T Consensus 95 L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~----l~~L~~L~l~~N~l~~ 154 (198)
T 1ds9_A 95 LEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAA----LDKLEDLLLAGNPLYN 154 (198)
T ss_dssp CSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTT----TTTCSEEEECSCHHHH
T ss_pred CCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhc----CCCCCEEEecCCcccc
Confidence 9999999999995 55 58889999999999999984322 35555 8889999999997533
No 119
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.44 E-value=3.4e-13 Score=125.19 Aligned_cols=103 Identities=29% Similarity=0.424 Sum_probs=95.4
Q ss_pred CCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEEEccCccCcccCChhccCCCCCCEEEcc
Q 024632 96 NLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVS 175 (265)
Q Consensus 96 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~ 175 (265)
.|+.|++++|.++ .+|. +..+++|+.|+|++|.++ .+|..++.+++|+.|+|++|++++ +| .++.+++|+.|+++
T Consensus 442 ~L~~L~Ls~n~l~-~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls 516 (567)
T 1dce_A 442 DVRVLHLAHKDLT-VLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLC 516 (567)
T ss_dssp TCSEEECTTSCCS-SCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECC
T ss_pred CceEEEecCCCCC-CCcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECC
Confidence 5789999999999 4776 999999999999999999 889999999999999999999995 78 79999999999999
Q ss_pred cCCCCCCC-ChhhhccCCCCCCCCCCCCCCCCC
Q 024632 176 NNKLSGPI-PASLGNRSGNLPKFNASSFEGNKD 207 (265)
Q Consensus 176 ~N~l~g~~-p~~~~~~~~~l~~l~~~~~~~N~~ 207 (265)
+|++++.. |..+.. ++.|+.+++++|+.
T Consensus 517 ~N~l~~~~~p~~l~~----l~~L~~L~L~~N~l 545 (567)
T 1dce_A 517 NNRLQQSAAIQPLVS----CPRLVLLNLQGNSL 545 (567)
T ss_dssp SSCCCSSSTTGGGGG----CTTCCEEECTTSGG
T ss_pred CCCCCCCCCcHHHhc----CCCCCEEEecCCcC
Confidence 99999876 999888 88999999999984
No 120
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.43 E-value=5.4e-15 Score=127.91 Aligned_cols=133 Identities=20% Similarity=0.198 Sum_probs=66.2
Q ss_pred CCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCC-CCCCC-CCCCcccCcccceeccccc-cCCCC-CchHhhhCC-c
Q 024632 70 NGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSN-ALTGS-IPADLQYLVNLAVLNLSAN-RLAGE-IPPQLTLCA-Y 144 (265)
Q Consensus 70 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~~-~p~~l~~l~~L~~L~Ls~N-~l~~~-~p~~~~~l~-~ 144 (265)
+++|++|++++|.+++..+..+..+++|++|++++| .+++. ++..+..+++|++|++++| .+++. ++..+..++ +
T Consensus 117 ~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~ 196 (336)
T 2ast_B 117 CSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSET 196 (336)
T ss_dssp BCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTT
T ss_pred CCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccC
Confidence 344444444444444333444444444455555444 33321 2333444455555555555 44422 344445555 5
Q ss_pred CCEEEccCc--cCc-ccCChhccCCCCCCEEEcccCC-CCCCCChhhhccCCCCCCCCCCCCCCCC
Q 024632 145 LNVIDLHDN--LLT-GQIPQQLGLLVRLSAFDVSNNK-LSGPIPASLGNRSGNLPKFNASSFEGNK 206 (265)
Q Consensus 145 L~~L~Ls~N--~l~-~~~p~~~~~l~~L~~L~l~~N~-l~g~~p~~~~~~~~~l~~l~~~~~~~N~ 206 (265)
|++|++++| .++ +.+|..+..+++|+.|++++|. +++..+..+.+ ++.|+.+++++|.
T Consensus 197 L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~----l~~L~~L~l~~~~ 258 (336)
T 2ast_B 197 ITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQ----LNYLQHLSLSRCY 258 (336)
T ss_dssp CCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGG----CTTCCEEECTTCT
T ss_pred CCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhC----CCCCCEeeCCCCC
Confidence 555555555 333 2344445556666666666666 55455555544 5666666666664
No 121
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.43 E-value=6.5e-15 Score=127.39 Aligned_cols=136 Identities=21% Similarity=0.295 Sum_probs=114.6
Q ss_pred ecCCCeEEEEeeCCCcccc-CCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccc-cCCC-CCchHhhhCCc
Q 024632 68 CNNGRIYKLSLTNLSLQGS-ISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSAN-RLAG-EIPPQLTLCAY 144 (265)
Q Consensus 68 ~~~~~l~~L~L~~n~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~-~~p~~~~~l~~ 144 (265)
..+++|++|++++|.+++. ++..+..+++|++|++++|.+++..+..+..+++|++|++++| .+++ .++..+..+++
T Consensus 90 ~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~ 169 (336)
T 2ast_B 90 FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR 169 (336)
T ss_dssp CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTT
T ss_pred ccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCC
Confidence 3578999999999998865 7778889999999999999998777888888999999999999 6775 26677889999
Q ss_pred CCEEEccCc-cCccc-CChhccCCC-CCCEEEcccC--CCC-CCCChhhhccCCCCCCCCCCCCCCCCC
Q 024632 145 LNVIDLHDN-LLTGQ-IPQQLGLLV-RLSAFDVSNN--KLS-GPIPASLGNRSGNLPKFNASSFEGNKD 207 (265)
Q Consensus 145 L~~L~Ls~N-~l~~~-~p~~~~~l~-~L~~L~l~~N--~l~-g~~p~~~~~~~~~l~~l~~~~~~~N~~ 207 (265)
|++|++++| .+++. ++..+..++ +|+.|++++| .++ +.+|..+.+ +++|+.+++++|..
T Consensus 170 L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~----~~~L~~L~l~~~~~ 234 (336)
T 2ast_B 170 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRR----CPNLVHLDLSDSVM 234 (336)
T ss_dssp CCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHH----CTTCSEEECTTCTT
T ss_pred CCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhh----CCCCCEEeCCCCCc
Confidence 999999999 88864 677788899 9999999999 565 456666666 78888999998874
No 122
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.42 E-value=1e-12 Score=118.89 Aligned_cols=122 Identities=25% Similarity=0.252 Sum_probs=77.9
Q ss_pred eecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCC
Q 024632 67 TCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLN 146 (265)
Q Consensus 67 ~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 146 (265)
+..+++|++|++++|.+++ +| ++.+++|++|++++|.+++ +| +..+++|++|++++|.+++ +| ++.+++|+
T Consensus 60 l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~-~~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~ 130 (457)
T 3bz5_A 60 IEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTN-LD--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLT 130 (457)
T ss_dssp GGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCC
T ss_pred hcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCce-ee--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCC
Confidence 4556667777777777664 33 6666777777777777664 33 5666777777777777764 33 66666777
Q ss_pred EEEccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCC
Q 024632 147 VIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNK 206 (265)
Q Consensus 147 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~ 206 (265)
+|++++|++++ ++ ++.+++|+.|++++|+..+.++ +.. ++.++.+++++|.
T Consensus 131 ~L~l~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~~--~~~----l~~L~~L~ls~n~ 181 (457)
T 3bz5_A 131 YLNCARNTLTE-ID--VSHNTQLTELDCHLNKKITKLD--VTP----QTQLTTLDCSFNK 181 (457)
T ss_dssp EEECTTSCCSC-CC--CTTCTTCCEEECTTCSCCCCCC--CTT----CTTCCEEECCSSC
T ss_pred EEECCCCccce-ec--cccCCcCCEEECCCCCcccccc--ccc----CCcCCEEECCCCc
Confidence 77777777764 33 5666677777777775544442 222 6667777777775
No 123
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.41 E-value=1.9e-14 Score=126.30 Aligned_cols=140 Identities=21% Similarity=0.231 Sum_probs=89.5
Q ss_pred eecCC-CeEEEEeeCCCccccCCccCcCC-----CCCCEEECcCCCCCCCCCCCccc----C-cccceeccccccCCCCC
Q 024632 67 TCNNG-RIYKLSLTNLSLQGSISPYLSNC-----TNLQSLDLSSNALTGSIPADLQY----L-VNLAVLNLSANRLAGEI 135 (265)
Q Consensus 67 ~~~~~-~l~~L~L~~n~l~~~~p~~l~~l-----~~L~~L~Ls~N~l~~~~p~~l~~----l-~~L~~L~Ls~N~l~~~~ 135 (265)
+..++ +|++|+|++|.+++..+..+..+ ++|++|++++|.+++..+..+.. + ++|++|++++|.+++..
T Consensus 46 l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 125 (362)
T 3goz_A 46 FANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKS 125 (362)
T ss_dssp HHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSC
T ss_pred HHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHH
Confidence 34455 67777777777775555555543 77777777777777554443332 3 67777777777777655
Q ss_pred chHhhh-----CCcCCEEEccCccCcccC----ChhccCCC-CCCEEEcccCCCCCCCChhhhccCCCC-CCCCCCCCCC
Q 024632 136 PPQLTL-----CAYLNVIDLHDNLLTGQI----PQQLGLLV-RLSAFDVSNNKLSGPIPASLGNRSGNL-PKFNASSFEG 204 (265)
Q Consensus 136 p~~~~~-----l~~L~~L~Ls~N~l~~~~----p~~~~~l~-~L~~L~l~~N~l~g~~p~~~~~~~~~l-~~l~~~~~~~ 204 (265)
+..+.. .++|++|++++|.+++.- +..+..++ +|+.|++++|++++..+..+....... +.++.+++++
T Consensus 126 ~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~ 205 (362)
T 3goz_A 126 SSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSA 205 (362)
T ss_dssp HHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTT
T ss_pred HHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCC
Confidence 554433 247788888888777433 33344454 788888888887766665555432334 3677778887
Q ss_pred CC
Q 024632 205 NK 206 (265)
Q Consensus 205 N~ 206 (265)
|.
T Consensus 206 N~ 207 (362)
T 3goz_A 206 NL 207 (362)
T ss_dssp SC
T ss_pred CC
Confidence 76
No 124
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.38 E-value=4.1e-12 Score=114.94 Aligned_cols=85 Identities=29% Similarity=0.278 Sum_probs=49.5
Q ss_pred CcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEEEccCccCcccCChhccCCCCCC
Q 024632 91 LSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLS 170 (265)
Q Consensus 91 l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 170 (265)
+..+++|++|++++|++++ +| +..+++|+.|++++|.+++. .+..+++|++|++++|++++ +| ++.+++|+
T Consensus 166 ~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~ 236 (457)
T 3bz5_A 166 VTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLT 236 (457)
T ss_dssp CTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCS
T ss_pred cccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCC
Confidence 3444555555555555553 33 44555566666666665532 25556666666666666664 45 56666777
Q ss_pred EEEcccCCCCCCCC
Q 024632 171 AFDVSNNKLSGPIP 184 (265)
Q Consensus 171 ~L~l~~N~l~g~~p 184 (265)
.|++++|++++..+
T Consensus 237 ~L~l~~N~l~~~~~ 250 (457)
T 3bz5_A 237 YFDCSVNPLTELDV 250 (457)
T ss_dssp EEECCSSCCSCCCC
T ss_pred EEEeeCCcCCCcCH
Confidence 77777777765443
No 125
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.37 E-value=8.7e-13 Score=122.29 Aligned_cols=115 Identities=25% Similarity=0.359 Sum_probs=74.2
Q ss_pred CeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEEEcc
Q 024632 72 RIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLH 151 (265)
Q Consensus 72 ~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 151 (265)
+|++|++++|.+++ +|. .+++|+.|++++|.+++ +|. .+++|++|++++|.+++ +|. +. ++|+.|+++
T Consensus 121 ~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls 188 (571)
T 3cvr_A 121 SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVS 188 (571)
T ss_dssp TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECC
T ss_pred CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECc
Confidence 78888888888875 555 56777777777777774 555 45677777777777764 555 44 667777777
Q ss_pred CccCcccCChhccCCCCC-------CEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCCC
Q 024632 152 DNLLTGQIPQQLGLLVRL-------SAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKD 207 (265)
Q Consensus 152 ~N~l~~~~p~~~~~l~~L-------~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~~ 207 (265)
+|+++ .+|. +.. +| +.|++++|+++ .+|..+.. ++.++.+++++|+.
T Consensus 189 ~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~----l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 189 TNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILS----LDPTCTIILEDNPL 242 (571)
T ss_dssp SSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGG----SCTTEEEECCSSSC
T ss_pred CCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhc----CCCCCEEEeeCCcC
Confidence 77666 5555 433 45 66666666666 46666555 55566666666654
No 126
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.36 E-value=5.5e-14 Score=124.17 Aligned_cols=132 Identities=17% Similarity=0.300 Sum_probs=68.4
Q ss_pred CCeEEEEeeCCCcc-ccCC---ccCcCCCCCCEEECcCCCCCC-----CCCCCcccCcccceeccccccCC----CCCch
Q 024632 71 GRIYKLSLTNLSLQ-GSIS---PYLSNCTNLQSLDLSSNALTG-----SIPADLQYLVNLAVLNLSANRLA----GEIPP 137 (265)
Q Consensus 71 ~~l~~L~L~~n~l~-~~~p---~~l~~l~~L~~L~Ls~N~l~~-----~~p~~l~~l~~L~~L~Ls~N~l~----~~~p~ 137 (265)
++|++|++++|.++ +.++ ..+..+++|++|++++|.++. ..|..+..+++|++|+|++|.++ +.+|.
T Consensus 159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~ 238 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI 238 (386)
T ss_dssp CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence 34444555544443 2222 234445555555555555541 12224555566666666666653 34455
Q ss_pred HhhhCCcCCEEEccCccCccc----CChhcc--CCCCCCEEEcccCCCCC----CCChhh-hccCCCCCCCCCCCCCCCC
Q 024632 138 QLTLCAYLNVIDLHDNLLTGQ----IPQQLG--LLVRLSAFDVSNNKLSG----PIPASL-GNRSGNLPKFNASSFEGNK 206 (265)
Q Consensus 138 ~~~~l~~L~~L~Ls~N~l~~~----~p~~~~--~l~~L~~L~l~~N~l~g----~~p~~~-~~~~~~l~~l~~~~~~~N~ 206 (265)
.+..+++|++|++++|.+++. +|..+. .+++|+.|++++|.+++ .+|..+ .+ ++.|+.+++++|+
T Consensus 239 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~----l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEK----MPDLLFLELNGNR 314 (386)
T ss_dssp HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHH----CTTCCEEECTTSB
T ss_pred HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhc----CCCceEEEccCCc
Confidence 555566666666666666543 344442 25666666666666654 255544 22 4555566666665
No 127
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.34 E-value=3.9e-14 Score=125.16 Aligned_cols=135 Identities=19% Similarity=0.274 Sum_probs=77.9
Q ss_pred ecCCCeEEEEeeCCCccc----cCCccCcCCCCCCEEECcCCCCCCCCCCCc----ccC---------cccceecccccc
Q 024632 68 CNNGRIYKLSLTNLSLQG----SISPYLSNCTNLQSLDLSSNALTGSIPADL----QYL---------VNLAVLNLSANR 130 (265)
Q Consensus 68 ~~~~~l~~L~L~~n~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l----~~l---------~~L~~L~Ls~N~ 130 (265)
..+++|++|+|++|.+.+ .+|..+..+++|++|+|++|.+++..+..+ ..+ ++|++|++++|.
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~ 170 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 170 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence 345667777777777664 355556666677777777776643222222 222 566666666666
Q ss_pred CC-CCCc---hHhhhCCcCCEEEccCccCcc-----cCChhccCCCCCCEEEcccCCCC----CCCChhhhccCCCCCCC
Q 024632 131 LA-GEIP---PQLTLCAYLNVIDLHDNLLTG-----QIPQQLGLLVRLSAFDVSNNKLS----GPIPASLGNRSGNLPKF 197 (265)
Q Consensus 131 l~-~~~p---~~~~~l~~L~~L~Ls~N~l~~-----~~p~~~~~l~~L~~L~l~~N~l~----g~~p~~~~~~~~~l~~l 197 (265)
++ +.+| ..+..+++|++|++++|+++. ..|..+..+++|+.|++++|.++ +.+|..+.. ++.|
T Consensus 171 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~----~~~L 246 (386)
T 2ca6_A 171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKS----WPNL 246 (386)
T ss_dssp CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGG----CTTC
T ss_pred CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHcc----CCCc
Confidence 65 2333 345556666666666666652 23335556666666666666664 345555544 5556
Q ss_pred CCCCCCCCC
Q 024632 198 NASSFEGNK 206 (265)
Q Consensus 198 ~~~~~~~N~ 206 (265)
+.+++++|.
T Consensus 247 ~~L~L~~n~ 255 (386)
T 2ca6_A 247 RELGLNDCL 255 (386)
T ss_dssp CEEECTTCC
T ss_pred CEEECCCCC
Confidence 666666654
No 128
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.32 E-value=8.7e-12 Score=116.79 Aligned_cols=77 Identities=32% Similarity=0.405 Sum_probs=50.1
Q ss_pred cccceeccccccCCCCCchHhhhCCcCCEEEccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCC
Q 024632 119 VNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFN 198 (265)
Q Consensus 119 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~ 198 (265)
++|+.|++++|.+++ +| ..+++|+.|++++|+++ .+|. .+++|+.|++++|+++ .+|..+.+ ++.++
T Consensus 221 ~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~----l~~L~ 287 (622)
T 3g06_A 221 SGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIH----LSSET 287 (622)
T ss_dssp TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGG----SCTTC
T ss_pred CCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhh----ccccC
Confidence 445566666666653 34 23456666777777666 4554 4567777777777777 66777666 67777
Q ss_pred CCCCCCCCCC
Q 024632 199 ASSFEGNKDL 208 (265)
Q Consensus 199 ~~~~~~N~~~ 208 (265)
.+++++|+..
T Consensus 288 ~L~L~~N~l~ 297 (622)
T 3g06_A 288 TVNLEGNPLS 297 (622)
T ss_dssp EEECCSCCCC
T ss_pred EEEecCCCCC
Confidence 7778777643
No 129
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.32 E-value=7.7e-12 Score=113.05 Aligned_cols=78 Identities=24% Similarity=0.359 Sum_probs=42.0
Q ss_pred CCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEEEc
Q 024632 71 GRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDL 150 (265)
Q Consensus 71 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 150 (265)
++|++|++++|.+++ +| .+..+++|++|++++|++++ +|..+ .+|++|++++|.+++ +| .++.+++|++|++
T Consensus 131 ~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l 202 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYA 202 (454)
T ss_dssp TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEEC
T ss_pred CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEEC
Confidence 355566666666653 44 35666666666666666653 44322 355555555555553 33 3555555555555
Q ss_pred cCccCc
Q 024632 151 HDNLLT 156 (265)
Q Consensus 151 s~N~l~ 156 (265)
++|+++
T Consensus 203 ~~N~l~ 208 (454)
T 1jl5_A 203 DNNSLK 208 (454)
T ss_dssp CSSCCS
T ss_pred CCCcCC
Confidence 555554
No 130
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.32 E-value=3.1e-13 Score=118.47 Aligned_cols=149 Identities=21% Similarity=0.207 Sum_probs=114.6
Q ss_pred CCCCCCceeecCCCeEEEEeeCCCccccCC----ccCcCCC-CCCEEECcCCCCCCCCCCCcccC-----cccceecccc
Q 024632 59 FTSYLPGATCNNGRIYKLSLTNLSLQGSIS----PYLSNCT-NLQSLDLSSNALTGSIPADLQYL-----VNLAVLNLSA 128 (265)
Q Consensus 59 ~~~~~~~~~~~~~~l~~L~L~~n~l~~~~p----~~l~~l~-~L~~L~Ls~N~l~~~~p~~l~~l-----~~L~~L~Ls~ 128 (265)
+.+..|......++|++|++++|.+++..+ ..+..++ +|++|++++|.+++..+..+..+ ++|++|++++
T Consensus 10 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~ 89 (362)
T 3goz_A 10 GSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSG 89 (362)
T ss_dssp TCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCS
T ss_pred chHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcC
Confidence 333345555556679999999999996555 6678888 89999999999997767666665 8999999999
Q ss_pred ccCCCCCchHhhhC-----CcCCEEEccCccCcccCChhc----cC-CCCCCEEEcccCCCCCCCChhhhccCCCCC-CC
Q 024632 129 NRLAGEIPPQLTLC-----AYLNVIDLHDNLLTGQIPQQL----GL-LVRLSAFDVSNNKLSGPIPASLGNRSGNLP-KF 197 (265)
Q Consensus 129 N~l~~~~p~~~~~l-----~~L~~L~Ls~N~l~~~~p~~~----~~-l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~-~l 197 (265)
|.+++..+..+... ++|++|++++|++++..+..+ .. .++|+.|++++|.+++..+..+.......+ .+
T Consensus 90 n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 169 (362)
T 3goz_A 90 NFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANV 169 (362)
T ss_dssp SCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTC
T ss_pred CcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccc
Confidence 99997777755544 899999999999997666544 33 369999999999998655554433222244 78
Q ss_pred CCCCCCCCCC
Q 024632 198 NASSFEGNKD 207 (265)
Q Consensus 198 ~~~~~~~N~~ 207 (265)
+.+++++|..
T Consensus 170 ~~L~Ls~n~l 179 (362)
T 3goz_A 170 NSLNLRGNNL 179 (362)
T ss_dssp CEEECTTSCG
T ss_pred cEeeecCCCC
Confidence 8899999864
No 131
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.26 E-value=3.1e-11 Score=109.07 Aligned_cols=109 Identities=27% Similarity=0.357 Sum_probs=80.7
Q ss_pred CCceeecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhC
Q 024632 63 LPGATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLC 142 (265)
Q Consensus 63 ~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l 142 (265)
.| .+.++++|++|++++|.+++ +|..+ .+|++|++++|.+++ +| .+..+++|++|++++|.+++ +|.. .
T Consensus 146 lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~ 214 (454)
T 1jl5_A 146 LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---P 214 (454)
T ss_dssp CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---C
T ss_pred Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---c
Confidence 45 36778899999999999884 66543 488888999888885 66 57888888888888888874 4432 2
Q ss_pred CcCCEEEccCccCcccCChhccCCCCCCEEEcccCCCCCCCCh
Q 024632 143 AYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPA 185 (265)
Q Consensus 143 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~ 185 (265)
++|++|++++|.++ .+|. ++.+++|+.|++++|++++ +|.
T Consensus 215 ~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~-l~~ 254 (454)
T 1jl5_A 215 LSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKT-LPD 254 (454)
T ss_dssp TTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSS-CCS
T ss_pred CcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCc-ccc
Confidence 46777788887777 6664 7777777777777777764 443
No 132
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.22 E-value=2.7e-11 Score=113.42 Aligned_cols=87 Identities=31% Similarity=0.364 Sum_probs=76.3
Q ss_pred CCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEEEccCccCcccCChhccCCCCCCEEEc
Q 024632 95 TNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDV 174 (265)
Q Consensus 95 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l 174 (265)
++|+.|++++|.++ .+| ..+++|+.|++++|.++ .+|. .+++|+.|++++|+++ .+|..+..+++|+.|++
T Consensus 221 ~~L~~L~Ls~N~L~-~lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L 291 (622)
T 3g06_A 221 SGLKELIVSGNRLT-SLP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNL 291 (622)
T ss_dssp TTCCEEECCSSCCS-CCC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEEC
T ss_pred CCCCEEEccCCccC-cCC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEe
Confidence 67888899998888 466 45689999999999999 5666 6789999999999999 88999999999999999
Q ss_pred ccCCCCCCCChhhhcc
Q 024632 175 SNNKLSGPIPASLGNR 190 (265)
Q Consensus 175 ~~N~l~g~~p~~~~~~ 190 (265)
++|++++.+|..+..+
T Consensus 292 ~~N~l~~~~~~~l~~L 307 (622)
T 3g06_A 292 EGNPLSERTLQALREI 307 (622)
T ss_dssp CSCCCCHHHHHHHHHH
T ss_pred cCCCCCCcCHHHHHhc
Confidence 9999999988877763
No 133
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.22 E-value=3.2e-13 Score=121.61 Aligned_cols=135 Identities=17% Similarity=0.161 Sum_probs=67.7
Q ss_pred ecCCCeEEEEeeCCCccccC-----CccCcCCCCCCEEECcCCCCCCC----CCCCcccCcccceeccccccC-------
Q 024632 68 CNNGRIYKLSLTNLSLQGSI-----SPYLSNCTNLQSLDLSSNALTGS----IPADLQYLVNLAVLNLSANRL------- 131 (265)
Q Consensus 68 ~~~~~l~~L~L~~n~l~~~~-----p~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l------- 131 (265)
..+++|++|++++|.++..- +..+..+++|++|++++|.+++. ++..+..+++|++|++++|.+
T Consensus 224 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~ 303 (461)
T 1z7x_W 224 ASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL 303 (461)
T ss_dssp HHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHH
T ss_pred HhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHH
Confidence 34566666666666654321 11122345555555555555521 333344444555555555544
Q ss_pred ----------------------CCC----CchHhhhCCcCCEEEccCccCcccCChhccC-----CCCCCEEEcccCCCC
Q 024632 132 ----------------------AGE----IPPQLTLCAYLNVIDLHDNLLTGQIPQQLGL-----LVRLSAFDVSNNKLS 180 (265)
Q Consensus 132 ----------------------~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~-----l~~L~~L~l~~N~l~ 180 (265)
++. ++..+..+++|++|++++|.+++..+..+.. .++|+.|++++|.++
T Consensus 304 l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~ 383 (461)
T 1z7x_W 304 LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS 383 (461)
T ss_dssp HHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCC
T ss_pred HHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCC
Confidence 422 2334444556666666666555433332221 445666666666665
Q ss_pred C----CCChhhhccCCCCCCCCCCCCCCCC
Q 024632 181 G----PIPASLGNRSGNLPKFNASSFEGNK 206 (265)
Q Consensus 181 g----~~p~~~~~~~~~l~~l~~~~~~~N~ 206 (265)
+ .+|..+.. ++.++.+++++|+
T Consensus 384 ~~~~~~l~~~l~~----~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 384 DSSCSSLAATLLA----NHSLRELDLSNNC 409 (461)
T ss_dssp HHHHHHHHHHHHH----CCCCCEEECCSSS
T ss_pred hhhHHHHHHHHHh----CCCccEEECCCCC
Confidence 4 45555544 5556666666665
No 134
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.19 E-value=2.1e-11 Score=106.32 Aligned_cols=69 Identities=25% Similarity=0.240 Sum_probs=38.6
Q ss_pred ceeecCCCeEEEEeeCCCccccCCc-cCcCCCCCCE-EECcCCCCCCCCCCCcccCcccceeccccccCCC
Q 024632 65 GATCNNGRIYKLSLTNLSLQGSISP-YLSNCTNLQS-LDLSSNALTGSIPADLQYLVNLAVLNLSANRLAG 133 (265)
Q Consensus 65 ~~~~~~~~l~~L~L~~n~l~~~~p~-~l~~l~~L~~-L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 133 (265)
+.+.++++|++|+|++|.+.+.+|. .|.+++++++ +++++|+++...|..|..+++|++|++++|.++.
T Consensus 48 ~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~ 118 (350)
T 4ay9_X 48 GAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKH 118 (350)
T ss_dssp TSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSS
T ss_pred HHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccccccccccccc
Confidence 4555566666666666665444433 3455555543 3444555654445556666666666666666653
No 135
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.16 E-value=3.3e-11 Score=105.04 Aligned_cols=117 Identities=20% Similarity=0.171 Sum_probs=72.4
Q ss_pred eeecCCCeE-EEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCC-------------------------CCcccC-
Q 024632 66 ATCNNGRIY-KLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIP-------------------------ADLQYL- 118 (265)
Q Consensus 66 ~~~~~~~l~-~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-------------------------~~l~~l- 118 (265)
++.+++++. .+.+.+|+++...|..+..+++|++|++++|.+.+..+ ..+..+
T Consensus 74 ~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~ 153 (350)
T 4ay9_X 74 VFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLS 153 (350)
T ss_dssp SBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSB
T ss_pred HhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcc
Confidence 444454433 34445566654445556666666666666665553222 122233
Q ss_pred cccceeccccccCCCCCchHhhhCCcCCEEEccC-ccCcccCC-hhccCCCCCCEEEcccCCCCCCCCh
Q 024632 119 VNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHD-NLLTGQIP-QQLGLLVRLSAFDVSNNKLSGPIPA 185 (265)
Q Consensus 119 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p-~~~~~l~~L~~L~l~~N~l~g~~p~ 185 (265)
..++.|++++|.++ .+|.......+|+.+++++ |.++ .+| +.|..+++|+.||+++|+++ .+|.
T Consensus 154 ~~l~~L~L~~N~i~-~i~~~~f~~~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~LdLs~N~l~-~lp~ 219 (350)
T 4ay9_X 154 FESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIH-SLPS 219 (350)
T ss_dssp SSCEEEECCSSCCC-EECTTSSTTEEEEEEECTTCTTCC-CCCTTTTTTEECCSEEECTTSCCC-CCCS
T ss_pred hhhhhhcccccccc-CCChhhccccchhHHhhccCCccc-CCCHHHhccCcccchhhcCCCCcC-ccCh
Confidence 34677888888887 4555555566788888875 5555 555 45788889999999999998 4554
No 136
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.08 E-value=6.6e-12 Score=112.93 Aligned_cols=110 Identities=25% Similarity=0.230 Sum_probs=56.9
Q ss_pred CeEEEEeeCCCccc----cCCccCcCCCCCCEEECcCCCCCCCCCCCcc-----cCcccceeccccccCCCC----CchH
Q 024632 72 RIYKLSLTNLSLQG----SISPYLSNCTNLQSLDLSSNALTGSIPADLQ-----YLVNLAVLNLSANRLAGE----IPPQ 138 (265)
Q Consensus 72 ~l~~L~L~~n~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~-----~l~~L~~L~Ls~N~l~~~----~p~~ 138 (265)
+|++|++++|.++. .++..+..+++|++|++++|.+++..+..+. ..++|++|++++|.+++. ++..
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 165 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV 165 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence 46666666666652 3455566666666666666665532222111 133566666666665532 2334
Q ss_pred hhhCCcCCEEEccCccCcccCChhcc-----CCCCCCEEEcccCCCCC
Q 024632 139 LTLCAYLNVIDLHDNLLTGQIPQQLG-----LLVRLSAFDVSNNKLSG 181 (265)
Q Consensus 139 ~~~l~~L~~L~Ls~N~l~~~~p~~~~-----~l~~L~~L~l~~N~l~g 181 (265)
+..+++|++|++++|.+++..+..+. ..++|+.|++++|.+++
T Consensus 166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~ 213 (461)
T 1z7x_W 166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTS 213 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBT
T ss_pred HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcH
Confidence 44555666666666655533222221 23455555555555543
No 137
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.93 E-value=1.5e-11 Score=108.42 Aligned_cols=137 Identities=18% Similarity=0.152 Sum_probs=92.4
Q ss_pred CCeEEEEeeCCCccccCCccC-cCCCCCCEEECcCCCCCCCCCCCc-----ccCcccceeccccccCCC----CCchHhh
Q 024632 71 GRIYKLSLTNLSLQGSISPYL-SNCTNLQSLDLSSNALTGSIPADL-----QYLVNLAVLNLSANRLAG----EIPPQLT 140 (265)
Q Consensus 71 ~~l~~L~L~~n~l~~~~p~~l-~~l~~L~~L~Ls~N~l~~~~p~~l-----~~l~~L~~L~Ls~N~l~~----~~p~~~~ 140 (265)
++|++|+|++|.++..-...+ ..+++|+.|+|++|.++..-...+ ...++|++|+|++|.++. .++..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 688899999998864322222 235678889999998864322222 235779999999998863 2334456
Q ss_pred hCCcCCEEEccCccCccc----CChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCCC
Q 024632 141 LCAYLNVIDLHDNLLTGQ----IPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKD 207 (265)
Q Consensus 141 ~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~~ 207 (265)
..++|++|+|++|.+++. ++..+...++|+.|++++|.++..-...+.......+.|+.+++++|+.
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNEL 251 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSC
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCC
Confidence 778899999999998742 3455677788999999999987532222322111257788888888863
No 138
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.80 E-value=5.1e-11 Score=104.94 Aligned_cols=138 Identities=16% Similarity=0.130 Sum_probs=96.7
Q ss_pred CCCeEEEEeeCCCccccCCcc----Cc-CCCCCCEEECcCCCCCCCCCCC-cccCcccceeccccccCCCCCchHhh---
Q 024632 70 NGRIYKLSLTNLSLQGSISPY----LS-NCTNLQSLDLSSNALTGSIPAD-LQYLVNLAVLNLSANRLAGEIPPQLT--- 140 (265)
Q Consensus 70 ~~~l~~L~L~~n~l~~~~p~~----l~-~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~~~p~~~~--- 140 (265)
.+++++|++++|.++...... +. ..++|++|+|++|.++..-... ...+.+|+.|+|++|.++......+.
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 467999999999987432222 22 2368999999999987432222 23467899999999999743333332
Q ss_pred --hCCcCCEEEccCccCcc----cCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCCC
Q 024632 141 --LCAYLNVIDLHDNLLTG----QIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNKD 207 (265)
Q Consensus 141 --~l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~~ 207 (265)
..++|++|+|++|.++. .++..+...++|++|++++|.+++.-...+.......+.++.+++++|..
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i 223 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGA 223 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCC
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCC
Confidence 35789999999999974 34555678899999999999997532222222112256788889999864
No 139
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.78 E-value=3.1e-10 Score=105.13 Aligned_cols=134 Identities=10% Similarity=0.017 Sum_probs=88.4
Q ss_pred cCCCeEEEEeeCCCccccCCccCcC-CCCCCEEECc----CCCCCCC-----CCCCcccCcccceeccccc--cCCCCCc
Q 024632 69 NNGRIYKLSLTNLSLQGSISPYLSN-CTNLQSLDLS----SNALTGS-----IPADLQYLVNLAVLNLSAN--RLAGEIP 136 (265)
Q Consensus 69 ~~~~l~~L~L~~n~l~~~~p~~l~~-l~~L~~L~Ls----~N~l~~~-----~p~~l~~l~~L~~L~Ls~N--~l~~~~p 136 (265)
.+++|++|++..+.+++..+..+.. +++|+.|+++ .|.+++. ++..+..+++|+.|+++++ .+++..+
T Consensus 376 ~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~ 455 (592)
T 3ogk_B 376 GCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGL 455 (592)
T ss_dssp HCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHH
T ss_pred hCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHH
Confidence 4677788888777777655555544 7788888885 5666642 1222455778888888643 3554444
Q ss_pred hHhhh-CCcCCEEEccCccCcc-cCChhccCCCCCCEEEcccCCCCCCC-ChhhhccCCCCCCCCCCCCCCCC
Q 024632 137 PQLTL-CAYLNVIDLHDNLLTG-QIPQQLGLLVRLSAFDVSNNKLSGPI-PASLGNRSGNLPKFNASSFEGNK 206 (265)
Q Consensus 137 ~~~~~-l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~l~~N~l~g~~-p~~~~~~~~~l~~l~~~~~~~N~ 206 (265)
..+.. +++|++|++++|++++ .++..+..+++|+.|++++|.+++.. +..... ++.|+.+++++|.
T Consensus 456 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~----l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 456 SYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTK----LPSLRYLWVQGYR 524 (592)
T ss_dssp HHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHH----CSSCCEEEEESCB
T ss_pred HHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHh----cCccCeeECcCCc
Confidence 44443 7788888888888875 34555677888888888888876543 333333 6777778888876
No 140
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.72 E-value=2.4e-08 Score=86.06 Aligned_cols=83 Identities=17% Similarity=0.135 Sum_probs=60.4
Q ss_pred CcccceeccccccCCCCCchHhhhCCcCCEEEccCccCcccCChhccCCCCCC-EEEcccCCCCCCCChhhhccCCCCCC
Q 024632 118 LVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLS-AFDVSNNKLSGPIPASLGNRSGNLPK 196 (265)
Q Consensus 118 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~-~L~l~~N~l~g~~p~~~~~~~~~l~~ 196 (265)
+++|+.+++++|.++...+..|.++.+|+.+++++| ++..-+..|.++++|+ .+++.+ .++..-+..|.+ .+.
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~----c~~ 298 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMG----CDN 298 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTT----CTT
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhC----Ccc
Confidence 567888888888888555567888888888888887 6645556788888888 888887 666444556655 566
Q ss_pred CCCCCCCCCC
Q 024632 197 FNASSFEGNK 206 (265)
Q Consensus 197 l~~~~~~~N~ 206 (265)
|+.+++.+|.
T Consensus 299 L~~l~l~~n~ 308 (329)
T 3sb4_A 299 LRYVLATGDK 308 (329)
T ss_dssp EEEEEECSSC
T ss_pred CCEEEeCCCc
Confidence 6666665554
No 141
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.70 E-value=2.5e-08 Score=85.93 Aligned_cols=118 Identities=14% Similarity=0.192 Sum_probs=72.6
Q ss_pred CCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccC-------C----------
Q 024632 70 NGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRL-------A---------- 132 (265)
Q Consensus 70 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-------~---------- 132 (265)
+++|+.|+|.+ .++..-+..|.++++|+.++++.|.+....+..|..+.++..+.+..+.. .
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 77888888887 67644455677788888888888877634444566665565555444211 0
Q ss_pred ---------CCCchH---------------------------h-hhCCcCCEEEccCccCcccCChhccCCCCCCEEEcc
Q 024632 133 ---------GEIPPQ---------------------------L-TLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVS 175 (265)
Q Consensus 133 ---------~~~p~~---------------------------~-~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~ 175 (265)
+.++.. + ..+++|+.+++++|+++..-+..|.++++|+.+++.
T Consensus 179 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~ 258 (329)
T 3sb4_A 179 ETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLP 258 (329)
T ss_dssp EEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECC
T ss_pred ceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECC
Confidence 001110 0 126788888888888874445567788888888888
Q ss_pred cCCCCCCCChhhhc
Q 024632 176 NNKLSGPIPASLGN 189 (265)
Q Consensus 176 ~N~l~g~~p~~~~~ 189 (265)
+| ++..-+..|.+
T Consensus 259 ~n-i~~I~~~aF~~ 271 (329)
T 3sb4_A 259 HN-LKTIGQRVFSN 271 (329)
T ss_dssp TT-CCEECTTTTTT
T ss_pred cc-cceehHHHhhC
Confidence 77 65333344444
No 142
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.65 E-value=5.2e-09 Score=96.92 Aligned_cols=102 Identities=16% Similarity=0.231 Sum_probs=57.7
Q ss_pred eEEEEeeCCC-cc-ccCCccCcCCCCCCEEECcCCCCCCC----CCCCcccCcccceeccccccCCC----CCchHhhhC
Q 024632 73 IYKLSLTNLS-LQ-GSISPYLSNCTNLQSLDLSSNALTGS----IPADLQYLVNLAVLNLSANRLAG----EIPPQLTLC 142 (265)
Q Consensus 73 l~~L~L~~n~-l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~----~~p~~~~~l 142 (265)
|++|+++++. +. ..++.....+++|++|++++|.+++. ++..+..+++|+.|++++|.+++ .++..+.++
T Consensus 140 L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~ 219 (592)
T 3ogk_B 140 LETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNC 219 (592)
T ss_dssp CCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHC
T ss_pred CcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhC
Confidence 7777777665 11 01222233566777777777766543 22233456677777777777652 223334566
Q ss_pred CcCCEEEccCccCcccCChhccCCCCCCEEEcc
Q 024632 143 AYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVS 175 (265)
Q Consensus 143 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~ 175 (265)
++|++|++++|.+.+ +|..+..+++|+.|+++
T Consensus 220 ~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~ 251 (592)
T 3ogk_B 220 RSLVSVKVGDFEILE-LVGFFKAAANLEEFCGG 251 (592)
T ss_dssp TTCCEEECSSCBGGG-GHHHHHHCTTCCEEEEC
T ss_pred CCCcEEeccCccHHH-HHHHHhhhhHHHhhccc
Confidence 677777777766663 45555555555555555
No 143
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.62 E-value=2.8e-08 Score=83.27 Aligned_cols=82 Identities=23% Similarity=0.353 Sum_probs=59.7
Q ss_pred EECcCCCCCCCCCCC----cccCcccceeccccccCCC--CCchHhhhCCcCCEEEccCccCcccCChhccCCC--CCCE
Q 024632 100 LDLSSNALTGSIPAD----LQYLVNLAVLNLSANRLAG--EIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLV--RLSA 171 (265)
Q Consensus 100 L~Ls~N~l~~~~p~~----l~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~--~L~~ 171 (265)
++++.|... .++.. ...+++|+.|+|++|.+++ .+|..+..+++|+.|+|++|++++. ..+..+. +|+.
T Consensus 148 l~l~~N~~~-~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~ 224 (267)
T 3rw6_A 148 IDVVLNRRS-CMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEE 224 (267)
T ss_dssp CCCCTTSHH-HHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSE
T ss_pred ccccCCHHH-HHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcce
Confidence 566666433 22221 2457889999999999986 4456778899999999999999854 3344444 8999
Q ss_pred EEcccCCCCCCCC
Q 024632 172 FDVSNNKLSGPIP 184 (265)
Q Consensus 172 L~l~~N~l~g~~p 184 (265)
|++++|.+++.+|
T Consensus 225 L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 225 LWLDGNSLCDTFR 237 (267)
T ss_dssp EECTTSTTGGGCS
T ss_pred EEccCCcCccccC
Confidence 9999999988776
No 144
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.58 E-value=3.7e-09 Score=83.80 Aligned_cols=111 Identities=16% Similarity=0.205 Sum_probs=56.8
Q ss_pred cCCCeEEEEeeCC-Cccc----cCCccCcCCCCCCEEECcCCCCCCC----CCCCcccCcccceeccccccCCCC----C
Q 024632 69 NNGRIYKLSLTNL-SLQG----SISPYLSNCTNLQSLDLSSNALTGS----IPADLQYLVNLAVLNLSANRLAGE----I 135 (265)
Q Consensus 69 ~~~~l~~L~L~~n-~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~----~ 135 (265)
..++|++|+|++| .+.. .+...+...++|++|+|++|.+... +...+...++|++|+|++|.++.. +
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l 113 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL 113 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHH
Confidence 3556677777776 6542 1233345556666666666666521 122233345566666666665521 1
Q ss_pred chHhhhCCcCCEEEc--cCccCccc----CChhccCCCCCCEEEcccCCC
Q 024632 136 PPQLTLCAYLNVIDL--HDNLLTGQ----IPQQLGLLVRLSAFDVSNNKL 179 (265)
Q Consensus 136 p~~~~~l~~L~~L~L--s~N~l~~~----~p~~~~~l~~L~~L~l~~N~l 179 (265)
...+...++|++|++ ++|.+... +...+...++|+.|++++|.+
T Consensus 114 ~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 114 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 223344455666666 55555532 222333445566666655554
No 145
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.51 E-value=7.4e-09 Score=95.83 Aligned_cols=132 Identities=10% Similarity=0.053 Sum_probs=69.8
Q ss_pred CCCeEEEEeeCCCccccCCccCc-CCCCCCEEECc--C----CCCCCCCCC------CcccCcccceeccccccCCCCCc
Q 024632 70 NGRIYKLSLTNLSLQGSISPYLS-NCTNLQSLDLS--S----NALTGSIPA------DLQYLVNLAVLNLSANRLAGEIP 136 (265)
Q Consensus 70 ~~~l~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls--~----N~l~~~~p~------~l~~l~~L~~L~Ls~N~l~~~~p 136 (265)
+++|++|.+..+.+++.....+. .+++|+.|+++ + |.++ ..|. .+..+++|+.|++++ .+++..+
T Consensus 371 ~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~-~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~ 448 (594)
T 2p1m_B 371 CPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLT-LEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVF 448 (594)
T ss_dssp CTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTT-CCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHH
T ss_pred chhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCccccc-CCchhhHHHHHHhhCCCccEEeecC-cccHHHH
Confidence 45566666665655543333332 35667777776 2 3443 1221 134456677777755 4443333
Q ss_pred hHhhh-CCcCCEEEccCccCcccCChhc-cCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCC
Q 024632 137 PQLTL-CAYLNVIDLHDNLLTGQIPQQL-GLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNK 206 (265)
Q Consensus 137 ~~~~~-l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~ 206 (265)
..+.. +++|+.|++++|.+++..+..+ ..+++|+.|++++|.+++..+..+. ..++.|+.+++++|+
T Consensus 449 ~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~---~~l~~L~~L~l~~~~ 517 (594)
T 2p1m_B 449 EYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANA---SKLETMRSLWMSSCS 517 (594)
T ss_dssp HHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTG---GGGGGSSEEEEESSC
T ss_pred HHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHH---HhCCCCCEEeeeCCC
Confidence 34443 6667777777777654433333 4566777777777776433222221 124556666666654
No 146
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.51 E-value=1.1e-07 Score=79.52 Aligned_cols=62 Identities=23% Similarity=0.297 Sum_probs=33.0
Q ss_pred hCCcCCEEEccCccCcc--cCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCC
Q 024632 141 LCAYLNVIDLHDNLLTG--QIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNK 206 (265)
Q Consensus 141 ~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~ 206 (265)
++++|+.|+|++|++++ .+|..+..+++|+.|+|++|++++. ..+..+.+ + .|+.+++++|+
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~-l-~L~~L~L~~Np 231 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKG-L-KLEELWLDGNS 231 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTT-S-CCSEEECTTST
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhccc-C-CcceEEccCCc
Confidence 45566666666666664 3344455566666666666666543 22333211 2 45555666665
No 147
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.45 E-value=1.2e-08 Score=80.80 Aligned_cols=120 Identities=11% Similarity=0.187 Sum_probs=86.8
Q ss_pred CCccCcCCCCCCEEECcCC-CCCCC----CCCCcccCcccceeccccccCCCC----CchHhhhCCcCCEEEccCccCcc
Q 024632 87 ISPYLSNCTNLQSLDLSSN-ALTGS----IPADLQYLVNLAVLNLSANRLAGE----IPPQLTLCAYLNVIDLHDNLLTG 157 (265)
Q Consensus 87 ~p~~l~~l~~L~~L~Ls~N-~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~ 157 (265)
+...+...+.|++|+|++| .+... +...+...++|++|+|++|.+... +...+...++|++|+|++|.|..
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG 107 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence 3445677889999999999 88632 233455678999999999999732 23445566899999999999985
Q ss_pred c----CChhccCCCCCCEEEc--ccCCCCCCCChhhhccCCCCCCCCCCCCCCCC
Q 024632 158 Q----IPQQLGLLVRLSAFDV--SNNKLSGPIPASLGNRSGNLPKFNASSFEGNK 206 (265)
Q Consensus 158 ~----~p~~~~~l~~L~~L~l--~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~ 206 (265)
. +...+...++|+.|++ ++|.+...--..+.......+.++.+++++|.
T Consensus 108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 108 SGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 3 4556777889999999 88999754333333322225677788887775
No 148
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.28 E-value=1.5e-07 Score=87.01 Aligned_cols=36 Identities=17% Similarity=0.213 Sum_probs=16.6
Q ss_pred CCCeEEEEeeCCCccccCCccCc-CCCCCCEEECcCC
Q 024632 70 NGRIYKLSLTNLSLQGSISPYLS-NCTNLQSLDLSSN 105 (265)
Q Consensus 70 ~~~l~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~N 105 (265)
.++|++|++++|.+++..+..+. .+++|++|++++|
T Consensus 104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~ 140 (594)
T 2p1m_B 104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSC 140 (594)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESC
T ss_pred CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCc
Confidence 45555566655555433322222 2444444444444
No 149
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.16 E-value=1e-07 Score=83.46 Aligned_cols=15 Identities=33% Similarity=0.534 Sum_probs=7.0
Q ss_pred CCCCCEEEcccCCCC
Q 024632 166 LVRLSAFDVSNNKLS 180 (265)
Q Consensus 166 l~~L~~L~l~~N~l~ 180 (265)
+++|+.|+++.|.+.
T Consensus 278 ~~~L~~LdLs~n~L~ 292 (362)
T 2ra8_A 278 LPQLETMDISAGVLT 292 (362)
T ss_dssp GGGCSEEECCSSCCB
T ss_pred CCCCCEEECCCCCCC
Confidence 344444444444444
No 150
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.08 E-value=4.5e-07 Score=79.35 Aligned_cols=112 Identities=16% Similarity=0.186 Sum_probs=69.8
Q ss_pred CCeEEEEeeCCCccccCCccCc--CCCCCCEEECcC--CCCCCC-----CCCCc--ccCcccceeccccccCCCCCchHh
Q 024632 71 GRIYKLSLTNLSLQGSISPYLS--NCTNLQSLDLSS--NALTGS-----IPADL--QYLVNLAVLNLSANRLAGEIPPQL 139 (265)
Q Consensus 71 ~~l~~L~L~~n~l~~~~p~~l~--~l~~L~~L~Ls~--N~l~~~-----~p~~l--~~l~~L~~L~Ls~N~l~~~~p~~~ 139 (265)
++|+.|++..+.+.......+. .+++|+.|+|+. |...+. +...+ ..+++|++|+|.+|.+.+..+..+
T Consensus 193 ~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~l 272 (362)
T 2ra8_A 193 PNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMF 272 (362)
T ss_dssp TTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHH
T ss_pred CCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHH
Confidence 4445555544444321111222 578888888753 221111 11112 246899999999988864333344
Q ss_pred h---hCCcCCEEEccCccCccc----CChhccCCCCCCEEEcccCCCCCC
Q 024632 140 T---LCAYLNVIDLHDNLLTGQ----IPQQLGLLVRLSAFDVSNNKLSGP 182 (265)
Q Consensus 140 ~---~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~l~~N~l~g~ 182 (265)
. .+++|++|+|+.|.+.+. ++..+..+++|+.|+++.|.++..
T Consensus 273 a~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~ 322 (362)
T 2ra8_A 273 LESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDE 322 (362)
T ss_dssp HHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHH
T ss_pred HhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHH
Confidence 3 478999999999999863 344445678999999999988744
No 151
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.97 E-value=1.9e-05 Score=69.90 Aligned_cols=61 Identities=8% Similarity=0.041 Sum_probs=28.5
Q ss_pred eeecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceecccc
Q 024632 66 ATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSA 128 (265)
Q Consensus 66 ~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 128 (265)
.+.++++|+.+++.+|.++ .++.......+|+.+.+..+ +...-...|..+++|+.+++..
T Consensus 175 aF~~c~~L~~l~l~~n~l~-~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~ 235 (401)
T 4fdw_A 175 IFYYCYNLKKADLSKTKIT-KLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPE 235 (401)
T ss_dssp TTTTCTTCCEEECTTSCCS-EECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCT
T ss_pred HhhCcccCCeeecCCCcce-EechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCC
Confidence 3344556666666666555 23322222345555555432 3312223344555555555544
No 152
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.91 E-value=2.7e-05 Score=68.94 Aligned_cols=132 Identities=13% Similarity=0.144 Sum_probs=82.5
Q ss_pred ceeecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCC-----CCCchHh
Q 024632 65 GATCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLA-----GEIPPQL 139 (265)
Q Consensus 65 ~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-----~~~p~~~ 139 (265)
+.+.++++|+.+++.++ ++..-...|.+ .+|+.+++. +.++..-+..|..+++|+.+++.+|.+. ...+..|
T Consensus 220 ~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF 296 (401)
T 4fdw_A 220 QAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCL 296 (401)
T ss_dssp TTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTT
T ss_pred hHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHh
Confidence 34556678888888765 44223334555 678888884 4455233456777888888888777654 2334567
Q ss_pred hhCCcCCEEEccCccCcccCChhccCCCCCCEEEcccCCCCCCCChhhhccCCCCCCCCCCCCCCCC
Q 024632 140 TLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLSGPIPASLGNRSGNLPKFNASSFEGNK 206 (265)
Q Consensus 140 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~~~~~~l~~l~~~~~~~N~ 206 (265)
.++++|+.+++. +.++..-...|.++++|+.+++..| ++..-+..|.+ . .|+.+.+.+|.
T Consensus 297 ~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~----~-~L~~l~l~~n~ 356 (401)
T 4fdw_A 297 EGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNN----T-GIKEVKVEGTT 356 (401)
T ss_dssp TTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSS----S-CCCEEEECCSS
T ss_pred hCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCC----C-CCCEEEEcCCC
Confidence 777888888887 3466444556777788888888554 54333444444 3 45566666654
No 153
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.83 E-value=6e-06 Score=64.52 Aligned_cols=35 Identities=9% Similarity=0.046 Sum_probs=19.7
Q ss_pred CCeEEEEeeCCCccccCCccCcCCCCCCEEECcCC
Q 024632 71 GRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSN 105 (265)
Q Consensus 71 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N 105 (265)
-+|+.||++++.++..--..+..+++|+.|+|+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C 95 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKC 95 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESC
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCC
Confidence 45677777777665322233455556666666555
No 154
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.66 E-value=1.3e-05 Score=62.58 Aligned_cols=86 Identities=10% Similarity=0.059 Sum_probs=64.3
Q ss_pred CCCCEEECcCCCCCCCCCCCcccCcccceecccccc-CCCCCchHhhhC----CcCCEEEccCcc-CcccCChhccCCCC
Q 024632 95 TNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANR-LAGEIPPQLTLC----AYLNVIDLHDNL-LTGQIPQQLGLLVR 168 (265)
Q Consensus 95 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~~~~l----~~L~~L~Ls~N~-l~~~~p~~~~~l~~ 168 (265)
..|+.||++++.++..--..+..+++|+.|+|+++. ++..--..+..+ ++|++|++++|. ++..--..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 479999999999875434457789999999999996 653222334443 479999999985 77533345678999
Q ss_pred CCEEEcccCC-CC
Q 024632 169 LSAFDVSNNK-LS 180 (265)
Q Consensus 169 L~~L~l~~N~-l~ 180 (265)
|+.|+++++. ++
T Consensus 141 L~~L~L~~c~~It 153 (176)
T 3e4g_A 141 LKYLFLSDLPGVK 153 (176)
T ss_dssp CCEEEEESCTTCC
T ss_pred CCEEECCCCCCCC
Confidence 9999999975 44
No 155
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.50 E-value=0.00014 Score=53.88 Aligned_cols=56 Identities=20% Similarity=0.235 Sum_probs=36.4
Q ss_pred eeccccccCC-CCCchHhhhCCcCCEEEccCccCcccCChhccCCCCCCEEEcccCCCC
Q 024632 123 VLNLSANRLA-GEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNNKLS 180 (265)
Q Consensus 123 ~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~ 180 (265)
.++.+++.++ ..+|..+. .+|++|+|++|+|+..-+..|..+++|+.|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5677777775 24454322 35777777777777444455667777777777777764
No 156
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=97.36 E-value=0.00052 Score=40.06 Aligned_cols=35 Identities=14% Similarity=0.070 Sum_probs=19.8
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 024632 222 SVLAIVGIGLGSGFASLVISFTGVCIWLKVTEHKM 256 (265)
Q Consensus 222 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (265)
....|++.++++++++++++..+++++|||++++|
T Consensus 8 ~~~aIA~gVVgGv~~v~ii~~~~~~~~RRRr~~~k 42 (44)
T 2l2t_A 8 RTPLIAAGVIGGLFILVIVGLTFAVYVRRKSIKKK 42 (44)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCC
T ss_pred CcceEEEeehHHHHHHHHHHHHHHHHhhhhhhhhc
Confidence 34556666666666655555555566555554443
No 157
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.20 E-value=0.00079 Score=49.72 Aligned_cols=56 Identities=25% Similarity=0.244 Sum_probs=32.7
Q ss_pred EEEeeCCCcc-ccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCC
Q 024632 75 KLSLTNLSLQ-GSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLA 132 (265)
Q Consensus 75 ~L~L~~n~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 132 (265)
.++-++++++ ..+|..+. ++|++|+|++|+|+...+..|..+++|++|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5666666665 24554332 35677777777776333344556666666666666553
No 158
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=97.10 E-value=0.0012 Score=38.63 Aligned_cols=34 Identities=12% Similarity=0.004 Sum_probs=17.9
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 024632 222 SVLAIVGIGLGSGFASLVISFTGVCIWLKVTEHK 255 (265)
Q Consensus 222 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (265)
....|++.+++++++++++++.++++++||++++
T Consensus 9 ~~~~IA~gVVgGv~~~~ii~~~~~~~~RRr~~~~ 42 (44)
T 2ks1_B 9 KIPSIATGMVGALLLLLVVALGIGLFMRRRHIVR 42 (44)
T ss_dssp CSSSSTHHHHHHHHHHHHHHHHHHHHHHTTTCCS
T ss_pred CcceEEeehhHHHHHHHHHHHHHHHHhhhhHhhc
Confidence 3444566666655555555555555555444433
No 159
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.04 E-value=0.0001 Score=58.52 Aligned_cols=59 Identities=14% Similarity=0.267 Sum_probs=31.7
Q ss_pred cccceeccccccCCC----CCchHhhhCCcCCEEEccCccCccc----CChhccCCCCCCEEEcccC
Q 024632 119 VNLAVLNLSANRLAG----EIPPQLTLCAYLNVIDLHDNLLTGQ----IPQQLGLLVRLSAFDVSNN 177 (265)
Q Consensus 119 ~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~l~~N 177 (265)
..|+.|+|++|.+.. .+...+..-+.|++|+|++|.|... +-+.+..-+.|+.|++++|
T Consensus 70 ~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 70 KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred CCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 445555555555431 1223334445666677777666531 2234445566788888754
No 160
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.96 E-value=9e-05 Score=58.88 Aligned_cols=85 Identities=15% Similarity=0.256 Sum_probs=55.0
Q ss_pred cCCCeEEEEeeCC-Cccc----cCCccCcCCCCCCEEECcCCCCCCC----CCCCcccCcccceeccccccCCCCC----
Q 024632 69 NNGRIYKLSLTNL-SLQG----SISPYLSNCTNLQSLDLSSNALTGS----IPADLQYLVNLAVLNLSANRLAGEI---- 135 (265)
Q Consensus 69 ~~~~l~~L~L~~n-~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~---- 135 (265)
+.+.|++|+|++| .+.. .+-..+..-+.|+.|+|++|.+... +.+.+..-+.|+.|+|++|.+...-
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 4567888888875 6642 1334466667888889988888632 2223334577888899988887321
Q ss_pred chHhhhCCcCCEEEccCc
Q 024632 136 PPQLTLCAYLNVIDLHDN 153 (265)
Q Consensus 136 p~~~~~l~~L~~L~Ls~N 153 (265)
-+.+..-..|+.|+|++|
T Consensus 119 a~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHTTTTCCCSEEECCCC
T ss_pred HHHHhhCCceeEEECCCC
Confidence 112333456888888765
No 161
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.81 E-value=0.0044 Score=54.24 Aligned_cols=84 Identities=17% Similarity=0.271 Sum_probs=34.7
Q ss_pred CcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEEEccCccCcccCChhccCCCCCC
Q 024632 91 LSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLS 170 (265)
Q Consensus 91 l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 170 (265)
+.+++.|+.+.+.. .++..-...|..+.+|+.+++..+ ++..-...|.++.+|+.+.+..+ ++..-...|.++.+|+
T Consensus 284 F~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~ 360 (394)
T 4gt6_A 284 FMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALN 360 (394)
T ss_dssp TTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCC
T ss_pred cccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCC
Confidence 44444444444432 222111223444455555555433 22122234444555555555332 3312223444555555
Q ss_pred EEEcccC
Q 024632 171 AFDVSNN 177 (265)
Q Consensus 171 ~L~l~~N 177 (265)
.+++.+|
T Consensus 361 ~i~~~~~ 367 (394)
T 4gt6_A 361 NIEYSGS 367 (394)
T ss_dssp EEEESSC
T ss_pred EEEECCc
Confidence 5555443
No 162
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=96.76 E-value=0.0036 Score=36.43 Aligned_cols=32 Identities=9% Similarity=0.079 Sum_probs=15.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 024632 223 VLAIVGIGLGSGFASLVISFTGVCIWLKVTEHK 255 (265)
Q Consensus 223 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (265)
...+++.++| +++++++++++++++|||+.++
T Consensus 11 ~~~Ia~~vVG-vll~vi~~l~~~~~~RRR~~~~ 42 (44)
T 2jwa_A 11 LTSIISAVVG-ILLVVVLGVVFGILIKRRQQKI 42 (44)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHHHHHCSCC
T ss_pred ccchHHHHHH-HHHHHHHHHHHHhheehhhhhc
Confidence 4446666666 4444444444444444444443
No 163
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=96.63 E-value=0.0033 Score=35.56 Aligned_cols=33 Identities=21% Similarity=0.103 Sum_probs=22.5
Q ss_pred CCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 024632 218 SKGLSVLAIVGIGLGSGFASLVISFTGVCIWLK 250 (265)
Q Consensus 218 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 250 (265)
.++++...|++++++.++.+++++.+.+++|+|
T Consensus 5 ~~~ls~GaIAGiVvG~v~gv~li~~l~~~~~rr 37 (38)
T 2k1k_A 5 SRGLTGGEIVAVIFGLLLGAALLLGILVFRSRR 37 (38)
T ss_dssp STTCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCCCCCCceeeeehHHHHHHHHHHHHHHHHeec
Confidence 456778888999888877666565555555533
No 164
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.50 E-value=0.0052 Score=53.73 Aligned_cols=105 Identities=12% Similarity=0.217 Sum_probs=68.8
Q ss_pred cCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEE
Q 024632 69 NNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVI 148 (265)
Q Consensus 69 ~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 148 (265)
+.+.|+.+.+.+ .++..-...|.++.+|+.+++..+ ++..-...|..+.+|+.+.+..+ ++..-...|.++.+|+.+
T Consensus 286 ~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i 362 (394)
T 4gt6_A 286 NCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNI 362 (394)
T ss_dssp TCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEE
T ss_pred cccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEE
Confidence 445666666653 344233456888999999999865 55233456889999999999765 553556789999999999
Q ss_pred EccCccCcccCChhccCCCCCCEEEcccCCC
Q 024632 149 DLHDNLLTGQIPQQLGLLVRLSAFDVSNNKL 179 (265)
Q Consensus 149 ~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l 179 (265)
++.++.... ..+....+|+.+.+..|.+
T Consensus 363 ~~~~~~~~~---~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 363 EYSGSRSQW---NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp EESSCHHHH---HTCBCCCCC----------
T ss_pred EECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence 999887552 4566778888888776654
No 165
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.48 E-value=0.013 Score=50.68 Aligned_cols=106 Identities=17% Similarity=0.148 Sum_probs=62.7
Q ss_pred CCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCEEEc
Q 024632 71 GRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDL 150 (265)
Q Consensus 71 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 150 (265)
..++.+.+..+ +...-...+.++..|+.+.+..+ ++..-...+..+.+|+.+.+..+ ++......|.++.+|+.+.+
T Consensus 217 ~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l 293 (379)
T 4h09_A 217 KNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVM 293 (379)
T ss_dssp SSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEE
T ss_pred cccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccc
Confidence 34445554433 22122334566677777777654 33122344666777777777544 33233345677788888888
Q ss_pred cCccCcccCChhccCCCCCCEEEcccCCCC
Q 024632 151 HDNLLTGQIPQQLGLLVRLSAFDVSNNKLS 180 (265)
Q Consensus 151 s~N~l~~~~p~~~~~l~~L~~L~l~~N~l~ 180 (265)
.++.++..-...|.++.+|+.+++..+ ++
T Consensus 294 ~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~ 322 (379)
T 4h09_A 294 DNSAIETLEPRVFMDCVKLSSVTLPTA-LK 322 (379)
T ss_dssp CCTTCCEECTTTTTTCTTCCEEECCTT-CC
T ss_pred cccccceehhhhhcCCCCCCEEEcCcc-cc
Confidence 777776444566777788888887644 44
No 166
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.38 E-value=0.0057 Score=53.04 Aligned_cols=107 Identities=15% Similarity=0.128 Sum_probs=79.5
Q ss_pred ecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCCCCCchHhhhCCcCCE
Q 024632 68 CNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLAGEIPPQLTLCAYLNV 147 (265)
Q Consensus 68 ~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 147 (265)
.+...|+.+.+..+ ++..-...+.++.+|+.+.+..+ +...-...|..+.+|+.+++.++.++..-...|.++.+|+.
T Consensus 237 ~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~ 314 (379)
T 4h09_A 237 YGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSS 314 (379)
T ss_dssp TTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCE
T ss_pred cCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCE
Confidence 34577888888776 55334456788899999998754 44233346788999999999998887555678899999999
Q ss_pred EEccCccCcccCChhccCCCCCCEEEcccC
Q 024632 148 IDLHDNLLTGQIPQQLGLLVRLSAFDVSNN 177 (265)
Q Consensus 148 L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N 177 (265)
+.+..+ ++..-...|.++.+|+.+.+..+
T Consensus 315 i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 315 VTLPTA-LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp EECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred EEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence 999765 55333467888899998877544
No 167
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.15 E-value=0.019 Score=50.11 Aligned_cols=108 Identities=11% Similarity=0.105 Sum_probs=63.3
Q ss_pred eecCCCeEEEEeeCCCccccCCccCcCCCCCCEEECcCCCCCCCCCCCcccCcccceeccccccCC--------------
Q 024632 67 TCNNGRIYKLSLTNLSLQGSISPYLSNCTNLQSLDLSSNALTGSIPADLQYLVNLAVLNLSANRLA-------------- 132 (265)
Q Consensus 67 ~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-------------- 132 (265)
+.+..+|+.+.+.++ ++..-...|.++++|+.+++..+ ++..-...|..+.+|+.+.+..+--.
T Consensus 67 F~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~~ 144 (394)
T 4fs7_A 67 FQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKEI 144 (394)
T ss_dssp TTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSEE
T ss_pred hhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeeccccccc
Confidence 345678899998754 66333456888899999998755 44122334666666766655433110
Q ss_pred -------CCCchHhhhCCcCCEEEccCccCcccCChhccCCCCCCEEEcccC
Q 024632 133 -------GEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNN 177 (265)
Q Consensus 133 -------~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N 177 (265)
..-...|.++.+|+.+.+.++... .-...|..+.+|+.+++..|
T Consensus 145 ~~~~~~~~i~~~aF~~c~~L~~i~l~~~~~~-I~~~~F~~c~~L~~i~l~~~ 195 (394)
T 4fs7_A 145 TIPEGVTVIGDEAFATCESLEYVSLPDSMET-LHNGLFSGCGKLKSIKLPRN 195 (394)
T ss_dssp ECCTTCCEECTTTTTTCTTCCEEECCTTCCE-ECTTTTTTCTTCCBCCCCTT
T ss_pred ccCccccccchhhhcccCCCcEEecCCccce-eccccccCCCCceEEEcCCC
Confidence 001234556677777777654332 33345666667777766554
No 168
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.06 E-value=0.012 Score=51.51 Aligned_cols=59 Identities=15% Similarity=0.028 Sum_probs=24.1
Q ss_pred cCcccceeccccccCCCCCchHhhhCCcCCEEEccCccCcccCChhccCCCCCCEEEcccC
Q 024632 117 YLVNLAVLNLSANRLAGEIPPQLTLCAYLNVIDLHDNLLTGQIPQQLGLLVRLSAFDVSNN 177 (265)
Q Consensus 117 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N 177 (265)
.+.+|+.+.+..+ ++..-...|.++.+|+.+++..+ ++..-...|.++.+|+.+++..|
T Consensus 295 ~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~ 353 (394)
T 4fs7_A 295 GCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS 353 (394)
T ss_dssp TCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT
T ss_pred ccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc
Confidence 3444444444332 22122233444455555554332 33122334444555555554433
No 169
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=91.38 E-value=0.63 Score=28.22 Aligned_cols=36 Identities=8% Similarity=0.006 Sum_probs=14.7
Q ss_pred CcchhhHHHHHHHHHHHHHHH-HHHHHHHhhhccccc
Q 024632 221 LSVLAIVGIGLGSGFASLVIS-FTGVCIWLKVTEHKM 256 (265)
Q Consensus 221 ~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 256 (265)
...+.|++.++++.+++.+++ ..+-+-+++|+++..
T Consensus 10 vp~wiIi~svl~GLllL~li~~~LwK~GFFkR~~~~~ 46 (54)
T 2knc_A 10 IPIWWVLVGVLGGLLLLTILVLAMWKVGFFKRNRPPL 46 (54)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCSC
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHcCcccCCCCCc
Confidence 344444444444433333332 223344444444433
No 170
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=91.18 E-value=0.36 Score=30.32 Aligned_cols=15 Identities=27% Similarity=0.069 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHH
Q 024632 229 IGLGSGFASLVISFT 243 (265)
Q Consensus 229 ~~~~~~~~~~~~~~~ 243 (265)
+++|+++.+++.+..
T Consensus 12 ivlGg~~~lll~~gl 26 (70)
T 2klu_A 12 IVLGGVAGLLLFIGL 26 (70)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHH
Confidence 455555544433333
No 171
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=88.83 E-value=1.3 Score=26.73 Aligned_cols=15 Identities=7% Similarity=0.025 Sum_probs=6.5
Q ss_pred cchhhHHHHHHHHHH
Q 024632 222 SVLAIVGIGLGSGFA 236 (265)
Q Consensus 222 ~~~~i~~~~~~~~~~ 236 (265)
..+.|++.++++.++
T Consensus 8 p~WiIi~svl~GLLL 22 (54)
T 2l8s_A 8 PLWVILLSAFAGLLL 22 (54)
T ss_dssp CTHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHH
Confidence 344444444444333
No 172
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=87.37 E-value=1.5 Score=25.32 Aligned_cols=16 Identities=6% Similarity=-0.409 Sum_probs=9.2
Q ss_pred HHHHHHHHHHhhhccc
Q 024632 239 VISFTGVCIWLKVTEH 254 (265)
Q Consensus 239 ~~~~~~~~~~~~~~~~ 254 (265)
++.++++..+++++||
T Consensus 29 ~~~~~~~RRr~~~~kR 44 (44)
T 2ks1_B 29 LGIGLFMRRRHIVRKR 44 (44)
T ss_dssp HHHHHHHHTTTCCSCC
T ss_pred HHHHHHhhhhHhhccC
Confidence 4555666666665554
No 173
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=85.01 E-value=1.6 Score=25.25 Aligned_cols=33 Identities=12% Similarity=0.083 Sum_probs=18.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Q 024632 226 IVGIGLGSGFASLVISFTGVCIWLKVTEHKMAL 258 (265)
Q Consensus 226 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (265)
+.+|+.+++..+++++++....|...|||+.+.
T Consensus 9 ~~aIA~gVVgGv~~v~ii~~~~~~~~RRRr~~~ 41 (44)
T 2l2t_A 9 TPLIAAGVIGGLFILVIVGLTFAVYVRRKSIKK 41 (44)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSC
T ss_pred cceEEEeehHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 344444444445555555666666666655543
No 174
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=84.90 E-value=0.34 Score=26.56 Aligned_cols=17 Identities=6% Similarity=-0.044 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHhh
Q 024632 234 GFASLVISFTGVCIWLK 250 (265)
Q Consensus 234 ~~~~~~~~~~~~~~~~~ 250 (265)
.+++++++..+.+++||
T Consensus 17 lll~vii~l~~~~~iRR 33 (35)
T 1iij_A 17 VLLFLILVVVVGILIKR 33 (35)
T ss_dssp HHHHHHHTTTTTHHHHH
T ss_pred HHHHHHHHHHhheEEee
Confidence 33333333334444443
No 175
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=84.58 E-value=0.8 Score=28.76 Aligned_cols=29 Identities=14% Similarity=-0.065 Sum_probs=17.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 024632 225 AIVGIGLGSGFASLVISFTGVCIWLKVTE 253 (265)
Q Consensus 225 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (265)
.+++.+++..+...++++..+.+|+|||+
T Consensus 12 ivlGg~~~lll~~glcI~ccvkcrhRrrq 40 (70)
T 2klu_A 12 IVLGGVAGLLLFIGLGIFFSVRSRHRRRQ 40 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCCSSS
T ss_pred HHHhHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 45566666666666666666656544443
No 176
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=79.64 E-value=1.2 Score=29.45 Aligned_cols=12 Identities=17% Similarity=0.379 Sum_probs=4.7
Q ss_pred cchhhHHHHHHH
Q 024632 222 SVLAIVGIGLGS 233 (265)
Q Consensus 222 ~~~~i~~~~~~~ 233 (265)
....|++.++++
T Consensus 9 n~~~Iv~gvi~g 20 (79)
T 2knc_B 9 DILVVLLSVMGA 20 (79)
T ss_dssp CSHHHHHHHHHH
T ss_pred CchhhHHHHHHH
Confidence 344444333333
No 177
>2l34_A TYRO protein tyrosine kinase-binding protein; immunoreceptor, transmembrane assembly, DAP12, protein bindi; NMR {Homo sapiens} PDB: 2l35_B
Probab=76.99 E-value=3.7 Score=22.08 Aligned_cols=24 Identities=21% Similarity=0.293 Sum_probs=15.0
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHH
Q 024632 221 LSVLAIVGIGLGSGFASLVISFTG 244 (265)
Q Consensus 221 ~~~~~i~~~~~~~~~~~~~~~~~~ 244 (265)
++...+++++++-++..++++..+
T Consensus 4 L~~gaIaGIVvgdi~~t~~i~~~v 27 (33)
T 2l34_A 4 VSPGVLAGIVVGDLVLTVLIALAV 27 (33)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcceEEeEeHHHHHHHHHHHHHH
Confidence 456677888887766655443333
No 178
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=76.77 E-value=3 Score=23.41 Aligned_cols=15 Identities=7% Similarity=0.146 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHH
Q 024632 227 VGIGLGSGFASLVIS 241 (265)
Q Consensus 227 ~~~~~~~~~~~~~~~ 241 (265)
.+++.+++..+++++
T Consensus 13 ~~I~~~vv~Gv~ll~ 27 (41)
T 2k9y_A 13 LAVIGGVAVGVVLLL 27 (41)
T ss_dssp THHHHHHHHHHHHHH
T ss_pred EEEEeehhHHHHHHH
Confidence 445555555544433
No 179
>1zza_A Stannin, AG8_1; helix, membrane protein; NMR {Homo sapiens}
Probab=73.33 E-value=7.6 Score=24.79 Aligned_cols=21 Identities=10% Similarity=0.210 Sum_probs=11.0
Q ss_pred HHHHHhhhccccccccccCCC
Q 024632 244 GVCIWLKVTEHKMALDQEGIS 264 (265)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~ 264 (265)
+.-||.+-|-+|..+.|.+-|
T Consensus 31 i~gcwcylrlqri~qsedees 51 (90)
T 1zza_A 31 ILGCWCYLRLQRISQSEDEES 51 (90)
T ss_dssp HHHHHTTTSSCSSCSSCCCTT
T ss_pred HHHHHHHHHHHHHhccccchh
Confidence 344555555555555554444
No 180
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=71.31 E-value=8 Score=22.01 Aligned_cols=13 Identities=15% Similarity=-0.008 Sum_probs=5.2
Q ss_pred cchhhHHHHHHHH
Q 024632 222 SVLAIVGIGLGSG 234 (265)
Q Consensus 222 ~~~~i~~~~~~~~ 234 (265)
..+.|++.++++.
T Consensus 9 p~wiIi~s~l~GL 21 (42)
T 2k1a_A 9 PIWWVLVGVLGGL 21 (42)
T ss_dssp CHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHH
Confidence 3444444334333
No 181
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=67.09 E-value=11 Score=20.30 Aligned_cols=14 Identities=7% Similarity=0.031 Sum_probs=6.8
Q ss_pred HHHHHHHHHHhhhc
Q 024632 239 VISFTGVCIWLKVT 252 (265)
Q Consensus 239 ~~~~~~~~~~~~~~ 252 (265)
.+.-..+..||-||
T Consensus 21 ~~lg~tflywrgrr 34 (40)
T 2l9u_A 21 MMLGGTFLYWRGRR 34 (40)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHhCceeEEEcccc
Confidence 33344556665444
No 182
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=66.70 E-value=7.8 Score=22.30 Aligned_cols=11 Identities=9% Similarity=0.208 Sum_probs=4.2
Q ss_pred HHHHhhhcccc
Q 024632 245 VCIWLKVTEHK 255 (265)
Q Consensus 245 ~~~~~~~~~~~ 255 (265)
.......|||+
T Consensus 29 l~~~~~~RRR~ 39 (44)
T 2jwa_A 29 VVFGILIKRRQ 39 (44)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHhheehhh
Confidence 33333434333
No 183
>3qrx_B Melittin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 1bh1_A 2mlt_A
Probab=56.10 E-value=6.1 Score=19.37 Aligned_cols=16 Identities=13% Similarity=0.443 Sum_probs=9.4
Q ss_pred HHHHHHHHHHhhhccc
Q 024632 239 VISFTGVCIWLKVTEH 254 (265)
Q Consensus 239 ~~~~~~~~~~~~~~~~ 254 (265)
..++-.++.|.+|+|+
T Consensus 10 a~~LP~liSWiK~kr~ 25 (26)
T 3qrx_B 10 TTGLPALISWIKRKRQ 25 (26)
T ss_pred HccchHHHHHHHHHhc
Confidence 3334456777777664
No 184
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=55.99 E-value=18 Score=20.58 Aligned_cols=9 Identities=33% Similarity=0.962 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 024632 240 ISFTGVCIW 248 (265)
Q Consensus 240 ~~~~~~~~~ 248 (265)
++++.++.|
T Consensus 23 iGl~lLliw 31 (43)
T 2k9j_B 23 IGLAALLIW 31 (43)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333444
No 185
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=52.12 E-value=30 Score=20.76 Aligned_cols=25 Identities=16% Similarity=0.186 Sum_probs=14.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHh
Q 024632 225 AIVGIGLGSGFASLVISFTGVCIWL 249 (265)
Q Consensus 225 ~i~~~~~~~~~~~~~~~~~~~~~~~ 249 (265)
.+..|+++++..+++.+++++..|+
T Consensus 8 p~WiIi~svl~GLLLL~Lii~~LwK 32 (54)
T 2l8s_A 8 PLWVILLSAFAGLLLLMLLILALWK 32 (54)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666666666655553
No 186
>1q90_G Cytochrome B6F complex subunit PETG; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.26.1
Probab=45.91 E-value=35 Score=18.54 Aligned_cols=21 Identities=24% Similarity=0.238 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 024632 227 VGIGLGSGFASLVISFTGVCI 247 (265)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~ 247 (265)
.+|++|.+-+.++-.++..+.
T Consensus 7 ~GIVlGlipvtlaGLfv~Ay~ 27 (37)
T 1q90_G 7 CGIVLGLVPVTIAGLFVTAYL 27 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHhhHHHHHHHHHHHHHH
Confidence 455665555443333333333
No 187
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A*
Probab=45.53 E-value=6 Score=38.29 Aligned_cols=14 Identities=21% Similarity=0.119 Sum_probs=0.0
Q ss_pred CCcchhhHHHHHHH
Q 024632 220 GLSVLAIVGIGLGS 233 (265)
Q Consensus 220 ~~~~~~i~~~~~~~ 233 (265)
+++...+++|.+++
T Consensus 701 ~l~~~aii~il~~~ 714 (880)
T 1q55_A 701 GFDLPIILVILGSV 714 (880)
T ss_dssp --------------
T ss_pred CccHHHHHHHHHHH
Confidence 44555555554433
No 188
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=37.90 E-value=65 Score=19.28 Aligned_cols=37 Identities=11% Similarity=0.076 Sum_probs=22.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhh-ccccccccc
Q 024632 224 LAIVGIGLGSGFASLVISFTGVCIWLKV-TEHKMALDQ 260 (265)
Q Consensus 224 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 260 (265)
..+..++++++..+++++++++..|+.- -||+++..+
T Consensus 10 vp~wiIi~svl~GLllL~li~~~LwK~GFFkR~~~~~~ 47 (54)
T 2knc_A 10 IPIWWVLVGVLGGLLLLTILVLAMWKVGFFKRNRPPLE 47 (54)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCSCC
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHcCcccCCCCCcc
Confidence 3445556666666777777777777654 444454443
No 189
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=37.29 E-value=33 Score=21.48 Aligned_cols=9 Identities=22% Similarity=0.490 Sum_probs=3.9
Q ss_pred hhHHHHHHH
Q 024632 225 AIVGIGLGS 233 (265)
Q Consensus 225 ~i~~~~~~~ 233 (265)
.+.+.++++
T Consensus 18 RigGLifA~ 26 (67)
T 2jp3_A 18 QLGGLIFGG 26 (67)
T ss_dssp HHHHHHHHH
T ss_pred eecchhhHH
Confidence 344444433
No 190
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=32.93 E-value=58 Score=20.60 Aligned_cols=9 Identities=22% Similarity=0.383 Sum_probs=3.9
Q ss_pred hhHHHHHHH
Q 024632 225 AIVGIGLGS 233 (265)
Q Consensus 225 ~i~~~~~~~ 233 (265)
.+.+.++++
T Consensus 17 RiGGLifA~ 25 (72)
T 2jo1_A 17 QIGGLVIAG 25 (72)
T ss_dssp HHHHHHHHH
T ss_pred hccchHHHH
Confidence 344444443
No 191
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=32.50 E-value=64 Score=20.94 Aligned_cols=26 Identities=27% Similarity=0.304 Sum_probs=16.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHh
Q 024632 224 LAIVGIGLGSGFASLVISFTGVCIWL 249 (265)
Q Consensus 224 ~~i~~~~~~~~~~~~~~~~~~~~~~~ 249 (265)
.-+.+|+.+++..+++++++.+++|+
T Consensus 8 ~n~~~Iv~gvi~gilliGllllliwk 33 (79)
T 2knc_B 8 PDILVVLLSVMGAILLIGLAALLIWK 33 (79)
T ss_dssp SCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666666666665
No 192
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=31.96 E-value=68 Score=17.72 Aligned_cols=7 Identities=29% Similarity=0.055 Sum_probs=2.8
Q ss_pred hhHHHHH
Q 024632 225 AIVGIGL 231 (265)
Q Consensus 225 ~i~~~~~ 231 (265)
.++.+++
T Consensus 11 ~i~lII~ 17 (40)
T 1afo_A 11 EITLIIF 17 (40)
T ss_dssp HHHHHHH
T ss_pred hhHHHHH
Confidence 3444433
No 193
>1vf5_G Protein PET G; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.26.1 PDB: 2d2c_G* 2e74_G* 2e75_G* 2e76_G* 2zt9_G*
Probab=29.48 E-value=37 Score=18.44 Aligned_cols=12 Identities=50% Similarity=0.648 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q 024632 227 VGIGLGSGFASL 238 (265)
Q Consensus 227 ~~~~~~~~~~~~ 238 (265)
.+|++|.+-+.+
T Consensus 7 ~GIVlGlipvtl 18 (37)
T 1vf5_G 7 DGLVLGLVFATL 18 (37)
T ss_dssp --CHHHHHHHHH
T ss_pred hhHHHhhHHHHH
Confidence 345555544433
No 194
>1zza_A Stannin, AG8_1; helix, membrane protein; NMR {Homo sapiens}
Probab=29.24 E-value=55 Score=20.80 Aligned_cols=28 Identities=7% Similarity=-0.124 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHhhhccccccccc
Q 024632 233 SGFASLVISFTGVCIWLKVTEHKMALDQ 260 (265)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (265)
++..+.+++..++|..+-+|-.+..++|
T Consensus 23 avaalg~li~gcwcylrlqri~qsedee 50 (90)
T 1zza_A 23 AIAALGALILGCWCYLRLQRISQSEDEE 50 (90)
T ss_dssp HHHHHHHHHHHHHTTTSSCSSCSSCCCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccch
Confidence 3333445566666666666655555443
No 195
>2llm_A Amyloid beta A4 protein; alzheimer'S disease, protein fibril; NMR {Homo sapiens} PDB: 2loh_A
Probab=32.12 E-value=14 Score=20.97 Aligned_cols=12 Identities=33% Similarity=0.462 Sum_probs=5.1
Q ss_pred hhhHHHHHHHHH
Q 024632 224 LAIVGIGLGSGF 235 (265)
Q Consensus 224 ~~i~~~~~~~~~ 235 (265)
..+++..++++.
T Consensus 17 ga~iGL~v~gVa 28 (43)
T 2llm_A 17 GAIIGLMVGGVV 28 (43)
Confidence 334444444433
No 196
>1hgv_A PH75 inovirus major coat protein; virus coat protein, helical virus coat protein, ssDNA viruses, filamentous bacteriophage, thermophiles; 2.4A {Bacteriophage PH75} SCOP: h.1.4.1 PDB: 1hgz_A 1hh0_A
Probab=25.41 E-value=92 Score=17.16 Aligned_cols=7 Identities=14% Similarity=0.472 Sum_probs=2.9
Q ss_pred HHHhhhc
Q 024632 246 CIWLKVT 252 (265)
Q Consensus 246 ~~~~~~~ 252 (265)
-.|++.|
T Consensus 35 aaw~ya~ 41 (46)
T 1hgv_A 35 AAWKYAK 41 (46)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3444433
No 197
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=23.13 E-value=61 Score=20.68 Aligned_cols=9 Identities=22% Similarity=0.527 Sum_probs=3.8
Q ss_pred hhHHHHHHH
Q 024632 225 AIVGIGLGS 233 (265)
Q Consensus 225 ~i~~~~~~~ 233 (265)
.+.+.++++
T Consensus 20 RigGLifA~ 28 (74)
T 2zxe_G 20 RVVGLIVAA 28 (74)
T ss_dssp HHHHHHHHH
T ss_pred eeccchhHH
Confidence 344444433
No 198
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=22.19 E-value=1.8e+02 Score=19.37 Aligned_cols=13 Identities=8% Similarity=0.291 Sum_probs=5.3
Q ss_pred CcCCCCCCEEECc
Q 024632 91 LSNCTNLQSLDLS 103 (265)
Q Consensus 91 l~~l~~L~~L~Ls 103 (265)
|.++++|+.+.+.
T Consensus 16 F~~c~~L~~i~iP 28 (100)
T 2lz0_A 16 FAGNTVIREITVQ 28 (100)
T ss_dssp TTTCTTCCCEEEC
T ss_pred hcCCCCCcEEEcC
Confidence 3344444444433
No 199
>2k21_A Potassium voltage-gated channel subfamily E member; KCNE1, membrane protein, potassium channel, MINK, auxilliary subunit, micelles, ION transport; NMR {Homo sapiens}
Probab=22.12 E-value=1.6e+02 Score=20.99 Aligned_cols=16 Identities=13% Similarity=-0.051 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHhhhc
Q 024632 237 SLVISFTGVCIWLKVT 252 (265)
Q Consensus 237 ~~~~~~~~~~~~~~~~ 252 (265)
++++++++-+.+.||+
T Consensus 65 ff~~GImLsYiRSKk~ 80 (138)
T 2k21_A 65 FFTLGIMLSYIRSKKL 80 (138)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHhhhc
Confidence 3344444555555544
No 200
>2k9p_A Pheromone alpha factor receptor; GPCR, micelle, structurral biology, fragment, G-protein COUP receptor, glycoprotein, membrane; NMR {Saccharomyces cerevisiae}
Probab=21.17 E-value=1.2e+02 Score=19.75 Aligned_cols=7 Identities=29% Similarity=0.297 Sum_probs=2.9
Q ss_pred HHHHHHH
Q 024632 227 VGIGLGS 233 (265)
Q Consensus 227 ~~~~~~~ 233 (265)
.+|+.|+
T Consensus 21 ~~I~~G~ 27 (80)
T 2k9p_A 21 QAILFGV 27 (80)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3444443
No 201
>2lp1_A C99; alzheimer'S D membrane protein, transmembrane Pro; NMR {Homo sapiens}
Probab=23.42 E-value=25 Score=24.61 Aligned_cols=10 Identities=30% Similarity=0.620 Sum_probs=4.2
Q ss_pred hHHHHHHHHH
Q 024632 226 IVGIGLGSGF 235 (265)
Q Consensus 226 i~~~~~~~~~ 235 (265)
+++..+++++
T Consensus 32 ~igL~v~~va 41 (122)
T 2lp1_A 32 IIGLMVGGVV 41 (122)
Confidence 4444444433
Done!