Query 024636
Match_columns 265
No_of_seqs 207 out of 1044
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 06:15:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024636.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024636hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00568 alkb DNA alkylation 100.0 1.2E-40 2.5E-45 285.5 9.6 129 91-221 41-169 (169)
2 PRK15401 alpha-ketoglutarate-d 100.0 1.1E-38 2.3E-43 281.8 15.2 150 93-264 64-213 (213)
3 PF13532 2OG-FeII_Oxy_2: 2OG-F 100.0 3.5E-33 7.6E-38 240.1 11.3 152 91-262 42-194 (194)
4 KOG2731 DNA alkylation damage 100.0 5.9E-34 1.3E-38 263.8 5.8 240 3-265 92-351 (378)
5 COG3145 AlkB Alkylated DNA rep 99.9 1.4E-27 3E-32 208.0 12.0 126 96-227 61-187 (194)
6 KOG4176 Uncharacterized conser 99.6 2.6E-15 5.7E-20 140.1 12.0 138 94-264 160-304 (323)
7 KOG3200 Uncharacterized conser 99.6 3.6E-15 7.8E-20 127.5 10.7 149 107-264 51-214 (224)
8 KOG3959 2-Oxoglutarate- and ir 97.6 8.6E-05 1.9E-09 66.9 4.9 133 101-263 109-276 (306)
9 PF03171 2OG-FeII_Oxy: 2OG-Fe( 97.1 0.00034 7.3E-09 53.6 2.9 71 146-224 1-84 (98)
10 KOG2731 DNA alkylation damage 96.9 0.00038 8.1E-09 66.0 1.3 61 145-221 313-377 (378)
11 PF13640 2OG-FeII_Oxy_3: 2OG-F 96.8 0.0021 4.6E-08 49.2 5.0 72 149-224 1-86 (100)
12 PF12933 FTO_NTD: FTO catalyti 96.2 0.0056 1.2E-07 55.5 3.9 78 143-221 135-236 (253)
13 smart00702 P4Hc Prolyl 4-hydro 92.4 1.5 3.2E-05 37.0 9.7 80 144-226 80-167 (178)
14 PRK05467 Fe(II)-dependent oxyg 89.3 3.2 6.9E-05 37.5 9.3 72 148-227 81-167 (226)
15 PF12851 Tet_JBP: Oxygenase do 88.7 3.1 6.6E-05 35.8 8.5 67 158-226 85-154 (171)
16 PF09859 Oxygenase-NA: Oxygena 86.3 3 6.6E-05 36.0 6.9 101 121-227 42-161 (173)
17 TIGR01762 chlorin-enz chlorina 80.6 20 0.00042 33.3 10.5 25 197-224 208-232 (288)
18 PF13759 2OG-FeII_Oxy_5: Putat 76.3 2.1 4.6E-05 33.0 2.3 72 149-225 2-90 (101)
19 TIGR02466 conserved hypothetic 65.6 50 0.0011 29.2 8.8 78 143-225 92-186 (201)
20 COG3826 Uncharacterized protei 64.7 35 0.00077 30.3 7.5 82 144-227 122-223 (236)
21 PRK10572 DNA-binding transcrip 57.0 44 0.00096 30.0 7.2 70 141-218 15-87 (290)
22 TIGR03037 anthran_nbaC 3-hydro 54.7 82 0.0018 27.0 7.9 90 122-221 3-93 (159)
23 COG2850 Uncharacterized conser 52.5 50 0.0011 32.1 6.9 88 123-223 100-202 (383)
24 PF08007 Cupin_4: Cupin superf 50.1 28 0.0006 32.6 4.8 62 147-214 112-192 (319)
25 COG3128 PiuC Uncharacterized i 44.0 49 0.0011 29.5 5.0 72 150-224 85-167 (229)
26 PRK13264 3-hydroxyanthranilate 41.4 1.2E+02 0.0026 26.5 7.0 88 121-218 8-96 (177)
27 COG1917 Uncharacterized conser 37.4 1.1E+02 0.0025 24.1 6.0 62 151-224 47-108 (131)
28 PF12852 Cupin_6: Cupin 34.0 1.9E+02 0.0041 24.3 7.1 71 145-224 11-81 (186)
29 PF10014 2OG-Fe_Oxy_2: 2OG-Fe 33.0 21 0.00046 31.1 1.1 68 158-228 114-181 (195)
30 PF03079 ARD: ARD/ARD' family; 32.0 63 0.0014 27.4 3.8 41 176-218 95-135 (157)
31 PF07883 Cupin_2: Cupin domain 31.3 26 0.00057 24.2 1.2 53 153-217 4-56 (71)
32 TIGR02408 ectoine_ThpD ectoine 25.5 3.1E+02 0.0068 24.9 7.5 26 199-227 212-237 (277)
33 COG1791 Uncharacterized conser 23.2 2E+02 0.0043 25.2 5.2 39 178-218 100-138 (181)
34 PF13621 Cupin_8: Cupin-like d 21.7 49 0.0011 28.5 1.3 70 147-224 131-232 (251)
35 PRK13503 transcriptional activ 21.4 1.9E+02 0.004 25.6 5.0 38 176-220 38-75 (278)
36 PLN02904 oxidoreductase 20.7 3.4E+02 0.0074 25.8 6.9 58 148-214 209-272 (357)
No 1
>TIGR00568 alkb DNA alkylation damage repair protein AlkB. Proteins in this family have an as of yet undetermined function in the repair of alkylation damage to DNA. Alignment and family designation based on phylogenomic analysis of Jonathan A. Eisen (PhD Thesis, Stanford University, 1999).
Probab=100.00 E-value=1.2e-40 Score=285.46 Aligned_cols=129 Identities=43% Similarity=0.676 Sum_probs=119.2
Q ss_pred hhcccceeeeeecceeeeCCccccCCCCCCCchHHHHHHHHHHhhccCCCCCCCCCceEEeeecCCCCCCCcccCCCCcC
Q 024636 91 GVLLRKLRWCTLGLQFDWSKRNYNVSLPHKKIPDALCQLAKRLAAPAMPIGEEFQPEAAIVNYFGLGDTLGGHLDDMEAD 170 (265)
Q Consensus 91 ~~l~~klrW~tlG~~ydw~~~~Y~~~~p~~~~P~~L~~L~~~l~~~~~~~~~~~~p~a~iVN~Y~~g~~lg~H~D~~e~~ 170 (265)
+...+||||++.|++|+|+++.|....++++||++|.+|++++++.+ ++.++.||+||||||++|++||||+|++|.+
T Consensus 41 r~~~~~l~W~~~g~~Y~ys~~~~~~~~~~p~~P~~L~~L~~~v~~~~--g~~~~~~n~~LvN~Y~~Gd~mg~H~D~~e~~ 118 (169)
T TIGR00568 41 MTNLGKLGWTTHGQGYLYSPKDPQTNKPWPAMPQDLGDLCERVATAA--GFPDFQPDACLVNRYAPGATLSLHQDRDEPD 118 (169)
T ss_pred hhhcccceEEcCCCcccCCCcccCCCCCCCCCCHHHHHHHHHHHHHh--CCCCCCCCEEEEEeecCCCcccccccccccc
Confidence 56778999999999999999999766678889999999999998765 4556799999999999999999999988888
Q ss_pred CCCCEEEEecCCceEEEeecCCCCCCCEEEEcCCCcEEEEcccccccccCC
Q 024636 171 WSKPIVSMSLGCKAIFLLGGKSREDPPLAMFLRSGDAVLMAGEARECFHGV 221 (265)
Q Consensus 171 ~~~PIvSlSLG~~aiFl~~~~~~~~~~~~l~L~sGDvlvMsG~sR~~~HgV 221 (265)
++.||+|||||++|+|+|+++++++.+.+|.|+|||+|||+|++|++||||
T Consensus 119 ~~~pI~SvSLG~~r~F~~~~~~~~~~~~~l~L~sGsllvM~G~sR~~~Hgv 169 (169)
T TIGR00568 119 LRAPLLSVSLGLPAIFLIGGLKRNDPPKRLRLHSGDVVIMGGESRLAFHGV 169 (169)
T ss_pred CCCCEEEEeCCCCEEEEecCCcCCCceEEEEeCCCCEEEECCchhccccCC
Confidence 889999999999999999999888889999999999999999999999998
No 2
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional
Probab=100.00 E-value=1.1e-38 Score=281.84 Aligned_cols=150 Identities=33% Similarity=0.510 Sum_probs=128.2
Q ss_pred cccceeeeeecceeeeCCccccCCCCCCCchHHHHHHHHHHhhccCCCCCCCCCceEEeeecCCCCCCCcccCCCCcCCC
Q 024636 93 LLRKLRWCTLGLQFDWSKRNYNVSLPHKKIPDALCQLAKRLAAPAMPIGEEFQPEAAIVNYFGLGDTLGGHLDDMEADWS 172 (265)
Q Consensus 93 l~~klrW~tlG~~ydw~~~~Y~~~~p~~~~P~~L~~L~~~l~~~~~~~~~~~~p~a~iVN~Y~~g~~lg~H~D~~e~~~~ 172 (265)
-+.++.|++-.-.|+|+........||++||++|.+|+++++..+ ++.+|.||+||||+|.+|++||||+|+.|.+++
T Consensus 64 ~~G~~~W~~d~~~YrYs~~~~~~~~pwp~~P~~l~~L~~~~~~~~--~~~~~~p~a~LvN~Y~~G~~mg~H~D~~E~~~~ 141 (213)
T PRK15401 64 NCGALGWVTDRRGYRYSPIDPLTGKPWPAMPASFLALAQRAAAAA--GFPGFQPDACLINRYAPGAKLSLHQDKDERDFR 141 (213)
T ss_pred ccccceEecCCCCcccCCcCCCCCCCCCCchHHHHHHHHHHHHHc--CCCCCCCCEEEEEeccCcCccccccCCCcccCC
Confidence 345789998666777776542223489999999999999997765 456789999999999999999999998787788
Q ss_pred CCEEEEecCCceEEEeecCCCCCCCEEEEcCCCcEEEEcccccccccCCCceecCCcchhhhhhhcccCCCCchhhhhcc
Q 024636 173 KPIVSMSLGCKAIFLLGGKSREDPPLAMFLRSGDAVLMAGEARECFHGVPRIFTDRENAEIASLDLQFSHEDDPFFLEYI 252 (265)
Q Consensus 173 ~PIvSlSLG~~aiFl~~~~~~~~~~~~l~L~sGDvlvMsG~sR~~~HgVpri~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 252 (265)
.||+|||||++|+|.|++.++++.+.+|.|+|||+|||+|++|++|||||++++.+.+ .+
T Consensus 142 ~pI~SvSLG~~~~F~~~~~~~~~~~~~l~L~~Gdllvm~G~sr~~~HgVp~~~~~~~p--------------------~~ 201 (213)
T PRK15401 142 APIVSVSLGLPAVFQFGGLKRSDPLQRILLEHGDVVVWGGPSRLRYHGILPLKAGEHP--------------------LT 201 (213)
T ss_pred CCEEEEeCCCCeEEEecccCCCCceEEEEeCCCCEEEECchHhheeccCCcCCCCcCC--------------------CC
Confidence 9999999999999999988777778999999999999999999999999999877543 12
Q ss_pred CCceeEEEeecc
Q 024636 253 RNSRININIRQV 264 (265)
Q Consensus 253 ~~~RINit~RqV 264 (265)
...|||||||+|
T Consensus 202 g~~RINLTFR~~ 213 (213)
T PRK15401 202 GECRINLTFRKA 213 (213)
T ss_pred CCCeEEEEeEcC
Confidence 468999999986
No 3
>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A ....
Probab=100.00 E-value=3.5e-33 Score=240.13 Aligned_cols=152 Identities=32% Similarity=0.590 Sum_probs=115.7
Q ss_pred hhcccceeeeeecceeeeCCc-cccCCCCCCCchHHHHHHHHHHhhccCCCCCCCCCceEEeeecCCCCCCCcccCCCCc
Q 024636 91 GVLLRKLRWCTLGLQFDWSKR-NYNVSLPHKKIPDALCQLAKRLAAPAMPIGEEFQPEAAIVNYFGLGDTLGGHLDDMEA 169 (265)
Q Consensus 91 ~~l~~klrW~tlG~~ydw~~~-~Y~~~~p~~~~P~~L~~L~~~l~~~~~~~~~~~~p~a~iVN~Y~~g~~lg~H~D~~e~ 169 (265)
+.+.++++|.+.|..|+|+.+ .+.. .++.++|++|.++++++..... ...++.||+||||+|.+|++|++|+|+.+.
T Consensus 42 ~~~~~~~~~~~~~~~y~y~~~~~~~~-~~~~~~p~~l~~~~~~~~~~~~-~~~~~~~n~~liN~Y~~g~~i~~H~D~~~~ 119 (194)
T PF13532_consen 42 RKLCGGLSWVGDGPSYRYSGKRPVRS-KPWPPFPEWLSRLLERLVEATG-IPPGWRPNQCLINYYRDGSGIGPHSDDEEY 119 (194)
T ss_dssp CE-SSEEEEEECT--CCCTCC-EECC-CEBSCCHHHHHHHHHHHHHHHT--SHSS--SEEEEEEESSTT-EEEE---TTC
T ss_pred eecceeeEEECCCCCeEcCCccccCC-CCCCCccHHHHHHHHHHHHHhc-cccCCCCCEEEEEecCCCCCcCCCCCcccc
Confidence 346688999999999999987 6655 4789999999999999976542 134689999999999999999999999977
Q ss_pred CCCCCEEEEecCCceEEEeecCCCCCCCEEEEcCCCcEEEEcccccccccCCCceecCCcchhhhhhhcccCCCCchhhh
Q 024636 170 DWSKPIVSMSLGCKAIFLLGGKSREDPPLAMFLRSGDAVLMAGEARECFHGVPRIFTDRENAEIASLDLQFSHEDDPFFL 249 (265)
Q Consensus 170 ~~~~PIvSlSLG~~aiFl~~~~~~~~~~~~l~L~sGDvlvMsG~sR~~~HgVpri~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (265)
+++.||+|||||++|+|.|++.+..+....+.|++||++||+|++|+.|||||++..++.+.
T Consensus 120 ~~~~~I~slSLG~~~~~~f~~~~~~~~~~~~~L~~gsl~vm~g~~r~~~H~I~~~~~~~~~~------------------ 181 (194)
T PF13532_consen 120 GFGPPIASLSLGSSRVFRFRNKSDDDEPIEVPLPPGSLLVMSGEARYDWHGIPPVKKDTHPS------------------ 181 (194)
T ss_dssp -CCSEEEEEEEES-EEEEEEECGGTS-EEEEEE-TTEEEEEETTHHHHEEEE-S-SCEEEES------------------
T ss_pred cCCCcEEEEEEccCceEEEeeccCCCccEEEEcCCCCEEEeChHHhhheeEcccccCCcccc------------------
Confidence 68899999999999999999887677889999999999999999998889999998764321
Q ss_pred hccCCceeEEEee
Q 024636 250 EYIRNSRININIR 262 (265)
Q Consensus 250 ~y~~~~RINit~R 262 (265)
.++++.|||||||
T Consensus 182 ~~~~~~RislTfR 194 (194)
T PF13532_consen 182 HYVRGRRISLTFR 194 (194)
T ss_dssp TEE-S-EEEEEEE
T ss_pred ccCCCCEEEEEeC
Confidence 1568999999999
No 4
>KOG2731 consensus DNA alkylation damage repair protein [RNA processing and modification]
Probab=100.00 E-value=5.9e-34 Score=263.80 Aligned_cols=240 Identities=35% Similarity=0.416 Sum_probs=177.4
Q ss_pred HHHHHHHHHHhhCCCCCCCCCCccccCCcchhHHHhhhhhhhhhhhcccCccCCCCCCCCCccccccceeecchh-hhcc
Q 024636 3 EQSQWIRESLTSFPQPPNRTNHNAFYGPIDDLFNAVKEKKVLLEEESSIGSLDLGASSCTSNEDAHRWKFYEEDI-ATLR 81 (265)
Q Consensus 3 ~q~~wi~~~l~~~~~~pn~tn~~~~~~~~~~lw~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~-~~~~ 81 (265)
+|..||.+| |+.|+.++|..+++|+.+ +..+.-..++ ..+-....|.+..+.+ +.+.
T Consensus 92 g~~k~~lqs----~~~~~s~~~~v~qe~e~~--~~~a~~~c~l----------------~~~~sd~t~~~~~s~ss~~~~ 149 (378)
T KOG2731|consen 92 GDNKLILQS----PQLPRSGGHFVIQEPENK--KSGAPNYCLL----------------VNRMSDVTLQDLESVSSESDQ 149 (378)
T ss_pred ccccccccC----CCcCcccceeeeeccccc--cccCcccccc----------------cccccccccccccccchhhhc
Confidence 455666663 899999999999998743 1111111100 0111112233332222 3456
Q ss_pred cccccccchhhcccceeeeeecceeeeCCcccc--CCCCCCCchHHHHHHHHHHhhccCCCCCCCCCceE-EeeecCCCC
Q 024636 82 GKTCKSVKAGVLLRKLRWCTLGLQFDWSKRNYN--VSLPHKKIPDALCQLAKRLAAPAMPIGEEFQPEAA-IVNYFGLGD 158 (265)
Q Consensus 82 ~~~~~~~~~~~l~~klrW~tlG~~ydw~~~~Y~--~~~p~~~~P~~L~~L~~~l~~~~~~~~~~~~p~a~-iVN~Y~~g~ 158 (265)
..+++++.++.+++||||+|+|++|||+++.|- -..++.-+|++|..+.+.-++++. ++.++...++ |+|||..++
T Consensus 150 ~~e~~sv~~~r~~~KlRw~T~G~~~dw~s~~~~~~~s~k~~~~~~~ll~~~~~~~~~a~-~~~~~~~~~Gli~nYlsi~~ 228 (378)
T KOG2731|consen 150 NVELKSVRNHRLLPKLRWVTLGNQYDWSSKDIFIFLSKKHYNIKPSLLGLLREKVKAAK-GFSHIVIRPGLIKNYLSIDD 228 (378)
T ss_pred cccceeccchhhhhhhcccccccccCCccccccccccccCCCCChHHhhhhhhhhhhhc-CccceeccCcceeeecccCc
Confidence 678889999889999999999999999999932 222455666777666666544443 5556655555 999999999
Q ss_pred CCCcccCCCCcCCCCCEEEEecCCceEEEeecCCCCCCCEEEEcCCCcEEEEcccccccccCCC--ceecCCcch-----
Q 024636 159 TLGGHLDDMEADWSKPIVSMSLGCKAIFLLGGKSREDPPLAMFLRSGDAVLMAGEARECFHGVP--RIFTDRENA----- 231 (265)
Q Consensus 159 ~lg~H~D~~e~~~~~PIvSlSLG~~aiFl~~~~~~~~~~~~l~L~sGDvlvMsG~sR~~~HgVp--ri~~~~~~~----- 231 (265)
+|+.|.|..|++...|++|+|||+.|||++|+..+++.+.+++|++||+++|+|.+|.++|||| +.+.+....
T Consensus 229 tl~ih~d~reld~~~pf~s~s~g~~ai~lLg~m~l~e~p~p~~lrsGdv~im~Gfsrlv~haIp~s~sl~~~e~~~~~~~ 308 (378)
T KOG2731|consen 229 TLGIHLDCRELDLSKPFYSPSLGQGAILLLGMMCLGENPDPMTLRSGDVVIMDGFSRLVEHAIPESRSLPARESNGTKAG 308 (378)
T ss_pred EEEEEeehhhcccCCccccccccccceeeecccccCCCCCccccccCceEeecchHHHHhhccchhceecccccCCCccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999 666654331
Q ss_pred -hhh-------h-hhcccCCCCchhhhhccCCceeEEEeeccC
Q 024636 232 -EIA-------S-LDLQFSHEDDPFFLEYIRNSRININIRQVF 265 (265)
Q Consensus 232 -~~~-------~-~~~~~~~~~~~~~~~y~~~~RINit~RqV~ 265 (265)
+++ + .....+.+.++.+++|+++.|+|||||||+
T Consensus 309 ~e~plp~i~~~~f~~~~g~~~~~Q~~~ey~ks~r~nl~Irqv~ 351 (378)
T KOG2731|consen 309 DEAPLPDICIVNFYSETGSLGLHQDKAEYLKSSRVNLPIRQVS 351 (378)
T ss_pred ccCCCcccccccccCCCcccccchhHHHHHHhhhcCceeEEec
Confidence 111 1 112355667889999999999999999985
No 5
>COG3145 AlkB Alkylated DNA repair protein [DNA replication, recombination, and repair]
Probab=99.95 E-value=1.4e-27 Score=207.98 Aligned_cols=126 Identities=31% Similarity=0.423 Sum_probs=109.3
Q ss_pred ceeeeeecceeeeCCccccCCCCCCCchHHHHHHHHHHhhccCCCCCCCCCceEEeeecCCCCCCCcccCCCCcCCCCCE
Q 024636 96 KLRWCTLGLQFDWSKRNYNVSLPHKKIPDALCQLAKRLAAPAMPIGEEFQPEAAIVNYFGLGDTLGGHLDDMEADWSKPI 175 (265)
Q Consensus 96 klrW~tlG~~ydw~~~~Y~~~~p~~~~P~~L~~L~~~l~~~~~~~~~~~~p~a~iVN~Y~~g~~lg~H~D~~e~~~~~PI 175 (265)
.+.|.+.-..|.+..+.+....+|+++|....+++... ++..+.|||||||+|.+|++||||+|.+|.+...||
T Consensus 61 ~~~W~~d~~gy~y~~~~p~~~~p~p~l~~~~~~~~~~~------g~~~~~~ea~Lvn~Y~pGd~ig~HqD~~e~~~~~~v 134 (194)
T COG3145 61 LLGWVTDRRGYRYSLRSPLTGKPWPPLLALFHDLFGAA------GYPFEGPEAVLVNRYRPGASIGWHQDKDEEDDRPPV 134 (194)
T ss_pred ccceecccccccccccccCCCCCCCccHHHHHHHHHHh------cCCCCChhheeEEeccCCCccccccccccccCCCce
Confidence 78899985557778888877767777778777777643 566789999999999999999999999998777799
Q ss_pred EEEecCCceEEEeecCCCCCCCEEEEcCCCcEEEEcccccccc-cCCCceecC
Q 024636 176 VSMSLGCKAIFLLGGKSREDPPLAMFLRSGDAVLMAGEARECF-HGVPRIFTD 227 (265)
Q Consensus 176 vSlSLG~~aiFl~~~~~~~~~~~~l~L~sGDvlvMsG~sR~~~-HgVpri~~~ 227 (265)
+|||||.+|+|.|++..+.+....+.|++||+|||+|++|+.| |.||+....
T Consensus 135 ~slSLg~~~~F~~~~~~r~~~~~~~~L~~Gdvvvm~G~~r~~~~h~~p~~~~~ 187 (194)
T COG3145 135 ASLSLGAPCIFRLRGRRRRGPGLRLRLEHGDVVVMGGPSRLAWHHIIPKTSRL 187 (194)
T ss_pred EEEecCCCeEEEeccccCCCCceeEEecCCCEEEecCCccccccccccccccC
Confidence 9999999999999999887889999999999999999999988 688887654
No 6
>KOG4176 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.62 E-value=2.6e-15 Score=140.13 Aligned_cols=138 Identities=26% Similarity=0.438 Sum_probs=104.5
Q ss_pred ccceeeeeecceeeeCCccccCCCCCCCchHHHHHHHHHHhhccCCCCCCCCCceEEeeecCCCCCCCcccCCCCcCCCC
Q 024636 94 LRKLRWCTLGLQFDWSKRNYNVSLPHKKIPDALCQLAKRLAAPAMPIGEEFQPEAAIVNYFGLGDTLGGHLDDMEADWSK 173 (265)
Q Consensus 94 ~~klrW~tlG~~ydw~~~~Y~~~~p~~~~P~~L~~L~~~l~~~~~~~~~~~~p~a~iVN~Y~~g~~lg~H~D~~e~~~~~ 173 (265)
.++.+-.+||+-|+|.+..-+...+..|+|..+..+.++|...- ..+. .||+|+||+|.+|++|.+|.|++. |..
T Consensus 160 gk~R~~iq~G~~f~y~~~~~d~~~~~~piPs~~~~ii~rlv~~~--~ip~-~pd~~~iN~Ye~G~~i~ph~~~~~--F~~ 234 (323)
T KOG4176|consen 160 GKHREVIQLGYPFDYRTNNVDESKPVDPIPSLFKSIIDRLVSWR--VIPE-RPDQCTINFYEPGDGIPPHIDHSA--FLD 234 (323)
T ss_pred ccceeeeecCceeccCCCcccccCccCCCchHHHHHHHHhhhhc--cCCC-CCCeeEEEeeCCCCCCCCCCChHH--hcC
Confidence 56666778999999999888875456899999999999997654 2334 799999999999999999997655 789
Q ss_pred CEEEEecCCceEEEeecCCCCCC------CEEEEcCCCcEEEEccccc-ccccCCCceecCCcchhhhhhhcccCCCCch
Q 024636 174 PIVSMSLGCKAIFLLGGKSREDP------PLAMFLRSGDAVLMAGEAR-ECFHGVPRIFTDRENAEIASLDLQFSHEDDP 246 (265)
Q Consensus 174 PIvSlSLG~~aiFl~~~~~~~~~------~~~l~L~sGDvlvMsG~sR-~~~HgVpri~~~~~~~~~~~~~~~~~~~~~~ 246 (265)
||+|+||=++|+|.||+.-.... .+.+.++-|++++|.|.+- ..-|.+..
T Consensus 235 Pi~slS~lSe~~m~Fg~~~~~~~~~~~~g~~s~p~~~g~~lvi~~~~ad~~~~~~~~----------------------- 291 (323)
T KOG4176|consen 235 PISSLSFLSECTMEFGHGLLSDNIGNFRGSLSLPLRYGSVLVIRGRSADVAPHCIRP----------------------- 291 (323)
T ss_pred ceEEEEeecceeEEecccccccCccccccccccccccCeEEEeCCCcccccccccCC-----------------------
Confidence 99999999999999998532211 2445555555555555542 22344332
Q ss_pred hhhhccCCceeEEEeecc
Q 024636 247 FFLEYIRNSRININIRQV 264 (265)
Q Consensus 247 ~~~~y~~~~RINit~RqV 264 (265)
.++.||+||||.+
T Consensus 292 -----~~~kRisitfrki 304 (323)
T KOG4176|consen 292 -----SRNKRISITFRKI 304 (323)
T ss_pred -----CCCceEEEEEEEe
Confidence 3799999999986
No 7
>KOG3200 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.61 E-value=3.6e-15 Score=127.54 Aligned_cols=149 Identities=18% Similarity=0.267 Sum_probs=106.7
Q ss_pred eeCCccccCCCCCCCchHHHHHHHHHHhhccCCCCCCCCCceEEeeecCCCCCCCcccCCCCcCCCCCEE-EEecCCceE
Q 024636 107 DWSKRNYNVSLPHKKIPDALCQLAKRLAAPAMPIGEEFQPEAAIVNYFGLGDTLGGHLDDMEADWSKPIV-SMSLGCKAI 185 (265)
Q Consensus 107 dw~~~~Y~~~~p~~~~P~~L~~L~~~l~~~~~~~~~~~~p~a~iVN~Y~~g~~lg~H~D~~e~~~~~PIv-SlSLG~~ai 185 (265)
||+.-.....+-...+|+||..+..++.... .|.+ .+|.++||.|.+|++|++|.|-... .||| +||||+.++
T Consensus 51 NyGGvvh~~glipeelP~wLq~~v~kinnlg--lF~s-~~NHVLVNeY~pgqGImPHtDGPaf---~piVstiSlGsh~v 124 (224)
T KOG3200|consen 51 NYGGVVHKTGLIPEELPPWLQYYVDKINNLG--LFKS-PANHVLVNEYLPGQGIMPHTDGPAF---HPIVSTISLGSHTV 124 (224)
T ss_pred hcCCccccCCcCccccCHHHHHHHHHhhccc--ccCC-CcceeEeecccCCCCcCcCCCCCcc---cceEEEEecCCceE
Confidence 4555555444444789999999999997654 3545 8999999999999999999999885 4655 789999999
Q ss_pred EEeecCCC----------C---CCCEEEEcCCCcEEEEccccc-ccccCCCceecCCcchhhhhhhcccCCCCchhhhhc
Q 024636 186 FLLGGKSR----------E---DPPLAMFLRSGDAVLMAGEAR-ECFHGVPRIFTDRENAEIASLDLQFSHEDDPFFLEY 251 (265)
Q Consensus 186 Fl~~~~~~----------~---~~~~~l~L~sGDvlvMsG~sR-~~~HgVpri~~~~~~~~~~~~~~~~~~~~~~~~~~y 251 (265)
+.|...-+ + ...+.+.|++.+++|+.+++- ...|||...-.+.....+.+ ...+. ..+.....
T Consensus 125 ldf~~p~r~e~~d~te~~dqp~R~~fsllleprslLilkd~aYtd~LHgIs~s~~d~l~~~~sn--a~ac~-s~k~Gd~l 201 (224)
T KOG3200|consen 125 LDFYDPVRQEVNDGTESKDQPLRYLFSLLLEPRSLLILKDDAYTDFLHGISDSPTDCLNQVVSN--ALACS-SRKDGDKL 201 (224)
T ss_pred EecccccccccCCccccCCCCccceeeeeeccceEEEEcCcHHHHHHhhcccChHHHHHHHhhh--hhhcc-ccCCccee
Confidence 99975211 1 124689999999999999994 45599987655533222211 11111 12223455
Q ss_pred cCCceeEEEeecc
Q 024636 252 IRNSRININIRQV 264 (265)
Q Consensus 252 ~~~~RINit~RqV 264 (265)
.++.|||+|+|.|
T Consensus 202 vr~tRvSLTiR~V 214 (224)
T KOG3200|consen 202 VRQTRVSLTIRLV 214 (224)
T ss_pred eecceeEEEEecc
Confidence 6799999999987
No 8
>KOG3959 consensus 2-Oxoglutarate- and iron-dependent dioxygenase-related proteins [General function prediction only]
Probab=97.59 E-value=8.6e-05 Score=66.94 Aligned_cols=133 Identities=23% Similarity=0.370 Sum_probs=91.3
Q ss_pred eecceeeeCCccccCCCCCCCchHHHHHHHHHHhhccCCCCCCC-CCceEEeeecCCC-CCCCcccCCCCcCCCCCEEEE
Q 024636 101 TLGLQFDWSKRNYNVSLPHKKIPDALCQLAKRLAAPAMPIGEEF-QPEAAIVNYFGLG-DTLGGHLDDMEADWSKPIVSM 178 (265)
Q Consensus 101 tlG~~ydw~~~~Y~~~~p~~~~P~~L~~L~~~l~~~~~~~~~~~-~p~a~iVN~Y~~g-~~lg~H~D~~e~~~~~PIvSl 178 (265)
.+|-.-|+..+..... .+..||+.-..+.+++.. .|.-.+| ..++|=+.|=+.. +.|-+|+||.=. ++.-+|++
T Consensus 109 dyGPKvNFkk~Klkt~-~F~G~P~~~~~v~rrm~~--yp~l~gfqp~EqCnLeYep~kgsaIdpH~DD~Wi-WGeRlv~~ 184 (306)
T KOG3959|consen 109 DYGPKVNFKKKKLKTD-TFVGMPEYADMVLRRMSE--YPVLKGFQPFEQCNLEYEPVKGSAIDPHQDDMWI-WGERLVRS 184 (306)
T ss_pred ccCCccchhhhhhccC-cccCCchHHHHHHHHhhc--cchhhccCcHHHcCcccccccCCccCccccchhh-hhhheeeh
Confidence 5787788887777654 477899998888888753 2333445 4578888776654 999999999754 55555554
Q ss_pred e-cC------------CceEEEeecC-------------------CCCCCCEEEEcCCCcEEEEcccccccc-cCCCcee
Q 024636 179 S-LG------------CKAIFLLGGK-------------------SREDPPLAMFLRSGDAVLMAGEARECF-HGVPRIF 225 (265)
Q Consensus 179 S-LG------------~~aiFl~~~~-------------------~~~~~~~~l~L~sGDvlvMsG~sR~~~-HgVpri~ 225 (265)
. || ++.++.+... ...+....|.+.+.|++||.|++|+-| |||=+.
T Consensus 185 n~l~d~vl~lc~~e~~~sg~~nL~~~~s~~~e~l~~~li~~s~~~l~~~~~~~ipmP~rSLlvl~g~aRyqwkH~vlr~- 263 (306)
T KOG3959|consen 185 NRLFDFVLKLCSKECLASGIINLNTNFSESNEFLSINLINGSVMTLNKSFLCYIPMPHRSLLVLAGEARYQWKHGVLRH- 263 (306)
T ss_pred hhccHHHHHhhhhhhhccceeeeccCccccccccchhhcccchhhhccceEEEeecCcceeEEeechhHhhHHHHHHHH-
Confidence 3 22 2234433321 012335688999999999999999966 999542
Q ss_pred cCCcchhhhhhhcccCCCCchhhhhccCCceeEEEeec
Q 024636 226 TDRENAEIASLDLQFSHEDDPFFLEYIRNSRININIRQ 263 (265)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~RINit~Rq 263 (265)
-++++||-+|+|.
T Consensus 264 -------------------------hi~~RRvcvt~RE 276 (306)
T KOG3959|consen 264 -------------------------HIRGRRVCVTMRE 276 (306)
T ss_pred -------------------------hhhhceeeeeHHh
Confidence 2578888888885
No 9
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit. The holoenzyme has the activity (1.14.11.2 from EC) catalysing the reaction: Procollagen L-proline + 2-oxoglutarate + O2 = procollagen trans-4-hydroxy-L-proline + succinate + CO2. The full enzyme consists of a alpha2 beta2 complex with the alpha subunit contributing most of the parts of the active site []. The family also includes lysyl hydrolases, isopenicillin synthases and AlkB. ; GO: 0016491 oxidoreductase activity, 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process; PDB: 3ON7_D 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A ....
Probab=97.14 E-value=0.00034 Score=53.62 Aligned_cols=71 Identities=15% Similarity=0.185 Sum_probs=35.0
Q ss_pred CceEEeeecC---CCCCCCcccCCCCcCCCCCEEEEecC-CceEEEeecCCCCCCCEEEEcCCCcEEEEccc--------
Q 024636 146 PEAAIVNYFG---LGDTLGGHLDDMEADWSKPIVSMSLG-CKAIFLLGGKSREDPPLAMFLRSGDAVLMAGE-------- 213 (265)
Q Consensus 146 p~a~iVN~Y~---~g~~lg~H~D~~e~~~~~PIvSlSLG-~~aiFl~~~~~~~~~~~~l~L~sGDvlvMsG~-------- 213 (265)
++.+.+|+|+ .+.++++|.|.. ..+++|-+- ...-+.|.... .-..+...++.++|+-|.
T Consensus 1 ~~~~~~~~Y~~~~~~~~~~~H~D~~-----~~~~Til~~~~~~gL~~~~~~---~~~~v~~~~~~~~v~~G~~l~~~t~g 72 (98)
T PF03171_consen 1 PSQLRLNRYPPPENGVGIGPHTDDE-----DGLLTILFQDEVGGLQVRDDG---EWVDVPPPPGGFIVNFGDALEILTNG 72 (98)
T ss_dssp --EEEEEEE-SCCGCEEEEEEEES-------SSEEEEEETSTS-EEEEETT---EEEE----TTCEEEEEBHHHHHHTTT
T ss_pred CCEEEEEECCCcccCCceeCCCcCC-----CCeEEEEecccchheeccccc---cccCccCccceeeeeceeeeecccCC
Confidence 4789999999 789999999985 345555443 44555555432 223333444455555554
Q ss_pred c-cccccCCCce
Q 024636 214 A-RECFHGVPRI 224 (265)
Q Consensus 214 s-R~~~HgVpri 224 (265)
. +.+.|+|...
T Consensus 73 ~~~~~~HrV~~~ 84 (98)
T PF03171_consen 73 RYPATLHRVVPP 84 (98)
T ss_dssp SS----EEEE--
T ss_pred ccCCceeeeEcC
Confidence 5 4456888554
No 10
>KOG2731 consensus DNA alkylation damage repair protein [RNA processing and modification]
Probab=96.89 E-value=0.00038 Score=65.98 Aligned_cols=61 Identities=38% Similarity=0.618 Sum_probs=51.7
Q ss_pred CCceEEeeecCCCCCCCcccCCCCcC----CCCCEEEEecCCceEEEeecCCCCCCCEEEEcCCCcEEEEcccccccccC
Q 024636 145 QPEAAIVNYFGLGDTLGGHLDDMEAD----WSKPIVSMSLGCKAIFLLGGKSREDPPLAMFLRSGDAVLMAGEARECFHG 220 (265)
Q Consensus 145 ~p~a~iVN~Y~~g~~lg~H~D~~e~~----~~~PIvSlSLG~~aiFl~~~~~~~~~~~~l~L~sGDvlvMsG~sR~~~Hg 220 (265)
.|+.||||+|..-..++.|.|..|.. -+-||++||.|. |.|++|... ++.. |.+|..+||
T Consensus 313 lp~i~~~~f~~~~g~~~~~Q~~~ey~ks~r~nl~Irqv~~~d-~~f~~~~~~-d~~~--------------~~sr~~f~~ 376 (378)
T KOG2731|consen 313 LPDICIVNFYSETGSLGLHQDKAEYLKSSRVNLPIRQVSIGD-AEFLYGDQR-DEDK--------------GRSRMVFHG 376 (378)
T ss_pred CcccccccccCCCcccccchhHHHHHHhhhcCceeEEeccCc-cccccCchh-hhhh--------------hhheecccC
Confidence 79999999999999999999988753 245999999999 999998754 3332 888999999
Q ss_pred C
Q 024636 221 V 221 (265)
Q Consensus 221 V 221 (265)
|
T Consensus 377 ~ 377 (378)
T KOG2731|consen 377 V 377 (378)
T ss_pred C
Confidence 7
No 11
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A ....
Probab=96.84 E-value=0.0021 Score=49.24 Aligned_cols=72 Identities=18% Similarity=0.256 Sum_probs=45.9
Q ss_pred EEeeecCCCCCCCcccCCCCcCCCCCEEEEe--cC-C-----ceEEEeecCC-CCCCCEEEE-----cCCCcEEEEcccc
Q 024636 149 AIVNYFGLGDTLGGHLDDMEADWSKPIVSMS--LG-C-----KAIFLLGGKS-REDPPLAMF-----LRSGDAVLMAGEA 214 (265)
Q Consensus 149 ~iVN~Y~~g~~lg~H~D~~e~~~~~PIvSlS--LG-~-----~aiFl~~~~~-~~~~~~~l~-----L~sGDvlvMsG~s 214 (265)
|-+|.|.+|+.+++|.|.... ..-++++- |. . ...+.|-... .+.....+. .+.|+++++.+
T Consensus 1 ~~~~~y~~G~~~~~H~D~~~~--~~~~~t~llyL~~~~~~~~GG~l~~~~~~~~~~~~~~~~~~~~~p~~g~~v~F~~-- 76 (100)
T PF13640_consen 1 MQLNRYPPGGFFGPHTDNSYD--PHRRVTLLLYLNDPEWEFEGGELEFYPSKDSDDVSREVEDFDIVPKPGRLVIFPS-- 76 (100)
T ss_dssp -EEEEEETTEEEEEEESSSCC--CSEEEEEEEESS-CS-HCEE--EEETTTS-TSSTCEEEGGGSEE-BTTEEEEEES--
T ss_pred CEEEEECcCCEEeeeECCCCC--CcceEEEEEEECCCCcccCCCEEEEeccccCCCcceEEEeccccCCCCEEEEEeC--
Confidence 457999999999999999531 12233222 33 1 1345554332 233444555 99999999999
Q ss_pred cccccCCCce
Q 024636 215 RECFHGVPRI 224 (265)
Q Consensus 215 R~~~HgVpri 224 (265)
...+|+|.++
T Consensus 77 ~~~~H~v~~v 86 (100)
T PF13640_consen 77 DNSLHGVTPV 86 (100)
T ss_dssp CTCEEEEEEE
T ss_pred CCCeecCccc
Confidence 7789999998
No 12
>PF12933 FTO_NTD: FTO catalytic domain; InterPro: IPR024367 Alpha-ketoglutarate-dependent dioxygenase FTO, also known as Fat mass and obesity-associated protein, is a nucleus protein which belongs to the FTO family. This enzyme is a dioxygenase that repairs alkylated DNA and RNA by oxidative demethylation []. FTO activity is highest towards single-stranded RNA containing 3-methyluracil, followed by single-stranded DNA containing 3-methylthymine. FTO has low demethylase activity towards single-stranded DNA containing 1-methyladenine or 3-methylcytosine []. FTO has no activity towards 1-methylguanine. It has no detectable activity towards double-stranded DNA. FTO requires molecular oxygen, alpha-ketoglutarate and iron. FTO contributes to the regulation of the global metabolic rate, energy expenditure and energy homeostasis. It contributes to the regulation of body size and body fat accumulation as well []. This domain is the catalytic AlkB-like domain from the FTO protein []. This domain catalyses a demethylase activity with a preference for 3-methylthymidine.; PDB: 3LFM_A.
Probab=96.15 E-value=0.0056 Score=55.52 Aligned_cols=78 Identities=28% Similarity=0.379 Sum_probs=43.6
Q ss_pred CCCCceEEeeecCC----------------C-CCCCcccCCCCcCCCCCEEEEecCC----ceEEEeecCC--CCCCCEE
Q 024636 143 EFQPEAAIVNYFGL----------------G-DTLGGHLDDMEADWSKPIVSMSLGC----KAIFLLGGKS--REDPPLA 199 (265)
Q Consensus 143 ~~~p~a~iVN~Y~~----------------g-~~lg~H~D~~e~~~~~PIvSlSLG~----~aiFl~~~~~--~~~~~~~ 199 (265)
...+|.++|||+.+ | -.+|||.|..-.+. .+|+..|.-+ ++.+.++=+. ..-+.+.
T Consensus 135 ~~~fNvTLlN~MdP~~~~~~~LK~Ep~fgmGKmaVsWH~DenL~~~-StVAVY~~s~~~~~~~~W~VgLka~D~~tP~L~ 213 (253)
T PF12933_consen 135 SCEFNVTLLNYMDPSSQAMPDLKEEPYFGMGKMAVSWHHDENLVER-STVAVYSYSCEEPEPADWHVGLKAWDIETPGLA 213 (253)
T ss_dssp -----EEEEEEE-S--S-SSS--B-SSS---BEEEEEE---SB-TT---EEEEEEE-----TTSEEEEEETT--SS-EEE
T ss_pred ceeeehhhhhccCcccccccccccccccCCcceeeeeccccccccc-cceEEEEecCCCCCCCceEEEEeecCCCCCeeE
Confidence 45789999999998 2 36899999876544 4666555433 4455554332 2235689
Q ss_pred EEcCCCcEEEEcccc-cccccCC
Q 024636 200 MFLRSGDAVLMAGEA-RECFHGV 221 (265)
Q Consensus 200 l~L~sGDvlvMsG~s-R~~~HgV 221 (265)
+.|++||++.|-+.. ..+.|+|
T Consensus 214 vPL~sgd~Y~Mldd~N~tHqH~V 236 (253)
T PF12933_consen 214 VPLRSGDCYYMLDDFNATHQHCV 236 (253)
T ss_dssp EEE-TT-EEEE-TTHHHHEEEEE
T ss_pred EeccCCCeEEEccccchhhHHHH
Confidence 999999999999998 7788987
No 13
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues. Mammalian enzymes catalyse hydroxylation of collagen, for example. Prokaryotic enzymes might catalyse hydroxylation of antibiotic peptides. These are 2-oxoglutarate-dependent dioxygenases, requiring 2-oxoglutarate and dioxygen as cosubstrates and ferrous iron as a cofactor.
Probab=92.35 E-value=1.5 Score=37.02 Aligned_cols=80 Identities=24% Similarity=0.336 Sum_probs=50.6
Q ss_pred CCCceEEeeecCCCCCCCcccCCCCcCC-CCCEEEE----e---cCCceEEEeecCCCCCCCEEEEcCCCcEEEEccccc
Q 024636 144 FQPEAAIVNYFGLGDTLGGHLDDMEADW-SKPIVSM----S---LGCKAIFLLGGKSREDPPLAMFLRSGDAVLMAGEAR 215 (265)
Q Consensus 144 ~~p~a~iVN~Y~~g~~lg~H~D~~e~~~-~~PIvSl----S---LG~~aiFl~~~~~~~~~~~~l~L~sGDvlvMsG~sR 215 (265)
...+.+.|..|.+|+...+|.|...... ..-++|+ | -|..-.|.-.+ ......+....|++|++...-.
T Consensus 80 ~~~~~~~~~~Y~~g~~~~~H~D~~~~~~~~~r~~T~~~yLn~~~~GG~~~f~~~~---~~~~~~v~P~~G~~v~f~~~~~ 156 (178)
T smart00702 80 LSAEDAQVARYGPGGHYGPHVDNFEDDENGDRIATFLLYLNDVEEGGELVFPGLG---LMVCATVKPKKGDLLFFPSGRG 156 (178)
T ss_pred ccCcceEEEEECCCCcccCcCCCCCCCCCCCeEEEEEEEeccCCcCceEEecCCC---CccceEEeCCCCcEEEEeCCCC
Confidence 4667889999999999999999865321 1223333 2 12211221111 1234578899999999986544
Q ss_pred ccccCCCceec
Q 024636 216 ECFHGVPRIFT 226 (265)
Q Consensus 216 ~~~HgVpri~~ 226 (265)
..+|++-.+..
T Consensus 157 ~~~H~v~pv~~ 167 (178)
T smart00702 157 RSLHGVCPVTR 167 (178)
T ss_pred CccccCCccee
Confidence 67799977653
No 14
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional
Probab=89.28 E-value=3.2 Score=37.47 Aligned_cols=72 Identities=21% Similarity=0.264 Sum_probs=45.9
Q ss_pred eEEeeecCCCCCCCcccCCCCcCC---C---CCEEEEe--c-------CCceEEEeecCCCCCCCEEEEcCCCcEEEEcc
Q 024636 148 AAIVNYFGLGDTLGGHLDDMEADW---S---KPIVSMS--L-------GCKAIFLLGGKSREDPPLAMFLRSGDAVLMAG 212 (265)
Q Consensus 148 a~iVN~Y~~g~~lg~H~D~~e~~~---~---~PIvSlS--L-------G~~aiFl~~~~~~~~~~~~l~L~sGDvlvMsG 212 (265)
-..+|.|..|..-++|+|..-... . .-.+|+. | |..-+|.- ......+.++.||+|++..
T Consensus 81 ~~~f~rY~~G~~y~~H~D~~~~~~~~~~~~~rs~lS~~lyLnd~~~yeGGEl~~~~-----~~g~~~Vkp~aG~~vlfps 155 (226)
T PRK05467 81 PPLFNRYEGGMSYGFHVDNAVRSLPGTGGRVRTDLSATLFLSDPDDYDGGELVIED-----TYGEHRVKLPAGDLVLYPS 155 (226)
T ss_pred cceEEEECCCCccCccccCCcccCCCCCcceeEEEEEEEEeCCCCCCcCCceEEec-----CCCcEEEecCCCeEEEECC
Confidence 457899999999999999974311 1 1123322 2 22222211 1123578899999999997
Q ss_pred cccccccCCCceecC
Q 024636 213 EARECFHGVPRIFTD 227 (265)
Q Consensus 213 ~sR~~~HgVpri~~~ 227 (265)
. ..|.|-.+...
T Consensus 156 ~---~lH~v~pVt~G 167 (226)
T PRK05467 156 T---SLHRVTPVTRG 167 (226)
T ss_pred C---CceeeeeccCc
Confidence 4 56988876654
No 15
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro []. Interestingly TET2 is considered as an oncogene, as it is found mutated in some types of cancer []. This entry represents the double-stranded beta helix (DSBH) fold of the 2-oxoglutarate (2OG) - Fe(II) oxygenases. DSBH comprises a part of the catalytic domain in TETS. It is found in many organisms including fruit fly, African malaria mosquito, zebrafish, mouse and human.
Probab=88.65 E-value=3.1 Score=35.77 Aligned_cols=67 Identities=15% Similarity=0.206 Sum_probs=43.9
Q ss_pred CCCCcccCCCCcCCC-CCEEEEecC--CceEEEeecCCCCCCCEEEEcCCCcEEEEcccccccccCCCceec
Q 024636 158 DTLGGHLDDMEADWS-KPIVSMSLG--CKAIFLLGGKSREDPPLAMFLRSGDAVLMAGEARECFHGVPRIFT 226 (265)
Q Consensus 158 ~~lg~H~D~~e~~~~-~PIvSlSLG--~~aiFl~~~~~~~~~~~~l~L~sGDvlvMsG~sR~~~HgVpri~~ 226 (265)
-....|.|......+ ..++.+-.| ....|.+-.....---+++.+.+||||++-| +...|||..+..
T Consensus 85 r~t~~HrD~~~~~~~~~~~~t~~~gd~~~g~l~lp~~~~~~~g~~~~~~~GtVl~~~~--~~~~Hgvtpv~~ 154 (171)
T PF12851_consen 85 RCTHSHRDTHNMPNGYDVLCTLGRGDYDGGRLELPGLDPNILGVAFAYQPGTVLIFCA--KRELHGVTPVES 154 (171)
T ss_pred cCccceecCCCCCCCeEEEEecCCccccCceEeccccccccCCEEEecCCCcEEEEcc--cceeeecCcccC
Confidence 377899998665322 245555554 3455555442222245789999999999976 455699999875
No 16
>PF09859 Oxygenase-NA: Oxygenase, catalysing oxidative methylation of damaged DNA; InterPro: IPR018655 This family of various hypothetical prokaryotic proteins, has no known function.
Probab=86.34 E-value=3 Score=36.02 Aligned_cols=101 Identities=26% Similarity=0.385 Sum_probs=58.4
Q ss_pred CchHHHHHHHHHHhhccCCCCCCCCCceEEeeecCCCCCCCcccCCC-CcCCCCC-EEEEec-CC---ceEEEeec--CC
Q 024636 121 KIPDALCQLAKRLAAPAMPIGEEFQPEAAIVNYFGLGDTLGGHLDDM-EADWSKP-IVSMSL-GC---KAIFLLGG--KS 192 (265)
Q Consensus 121 ~~P~~L~~L~~~l~~~~~~~~~~~~p~a~iVN~Y~~g~~lg~H~D~~-e~~~~~P-IvSlSL-G~---~aiFl~~~--~~ 192 (265)
.+|+.+.++.++..+.. ..+| ..++..|..|+....|.|-- |..|.-- ++-+|= |. -..|.+.. ..
T Consensus 42 ~yP~~~~~fl~~ch~aG-----Q~rp-tplllrY~~gdyn~LHqdlyGe~vFPlQvv~lLs~Pg~DftGGEFVltEQrPR 115 (173)
T PF09859_consen 42 RYPATLAEFLARCHAAG-----QTRP-TPLLLRYGPGDYNCLHQDLYGEHVFPLQVVILLSEPGEDFTGGEFVLTEQRPR 115 (173)
T ss_pred CCCccHHHHHHHHHhcc-----CCCC-chhhheeCCCCccccccCCCCCcccCeEEEEEcCCCCCcccCceEEEEEecCC
Confidence 34555555555543321 2233 46778899999999999974 3323221 233441 11 12455532 12
Q ss_pred CCCCCEEEEcCCCcEEEEcccc----------ccc-ccCCCceecC
Q 024636 193 REDPPLAMFLRSGDAVLMAGEA----------REC-FHGVPRIFTD 227 (265)
Q Consensus 193 ~~~~~~~l~L~sGDvlvMsG~s----------R~~-~HgVpri~~~ 227 (265)
....+..+.|+-||.+|+.-.- |-. .|||.++...
T Consensus 116 ~QSR~~V~~L~qGda~if~t~~RPv~G~rG~yRv~~RHgVS~vrsG 161 (173)
T PF09859_consen 116 MQSRAMVLPLRQGDALIFATNHRPVRGARGYYRVNMRHGVSRVRSG 161 (173)
T ss_pred ccCccccCCcCCCCEEEEecCCCCcCCCccceeccccccccccccc
Confidence 2345778999999999997632 222 3888777643
No 17
>TIGR01762 chlorin-enz chlorinating enzymes. This model represents a a group of highly homologous enzymes related to dioxygenases which chlorinate amino acid methyl groups. BarB1 and BarB2 are proposed to trichlorinate one of the methyl groups of a leucine residue in the biosynthesis of barbamide in the cyanobacterium Lyngbya majuscula. SyrB2 is proposed to chlorinate the methyl group of threonine in the biosynthesis of syringomycin in Pseudomonas syringae. CmaB is proposed to chlorinate the beta-methyl group of alloisoleucine in the process of ring closure in the biosynthesis of coronamic acid, a component of coronatine also in Pseudomonas syringae.
Probab=80.61 E-value=20 Score=33.27 Aligned_cols=25 Identities=12% Similarity=0.254 Sum_probs=17.8
Q ss_pred CEEEEcCCCcEEEEcccccccccCCCce
Q 024636 197 PLAMFLRSGDAVLMAGEARECFHGVPRI 224 (265)
Q Consensus 197 ~~~l~L~sGDvlvMsG~sR~~~HgVpri 224 (265)
.+.+.++.||+++|++- .+||--..
T Consensus 208 ~v~~~lkaGd~~~f~~~---t~HgS~~N 232 (288)
T TIGR01762 208 AVPMQMKAGQFIIFWST---LMHASYPN 232 (288)
T ss_pred eeeeeeCCceEEEECCC---ceecCCCC
Confidence 35788899999999884 35665443
No 18
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A.
Probab=76.26 E-value=2.1 Score=33.01 Aligned_cols=72 Identities=17% Similarity=0.135 Sum_probs=30.0
Q ss_pred EEeeecCCCCCCCcccCCCCcCCCCCEEEEecCCce-EEEee-c---------------CCCCCCCEEEEcCCCcEEEEc
Q 024636 149 AIVNYFGLGDTLGGHLDDMEADWSKPIVSMSLGCKA-IFLLG-G---------------KSREDPPLAMFLRSGDAVLMA 211 (265)
Q Consensus 149 ~iVN~Y~~g~~lg~H~D~~e~~~~~PIvSlSLG~~a-iFl~~-~---------------~~~~~~~~~l~L~sGDvlvMs 211 (265)
|-+|.|..|+....|.-.... . ..|.=|.++... .+.|. + .........+..+.||+||+.
T Consensus 2 ~W~ni~~~g~~~~~H~H~~s~-~-SgVyYv~~p~~~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~G~lvlFP 79 (101)
T PF13759_consen 2 SWANIYRKGGYNEPHNHPNSW-L-SGVYYVQVPEGSGPLRFHDPRGSFSFGAPFDNYDQNDLNSPYYIVEPEEGDLVLFP 79 (101)
T ss_dssp EEEEEE-TT--EEEE--TT-S-E-EEEEECE--TTS-SEEEE-TTCCCGTTS----TTTTCCC-SEEEE---TTEEEEEE
T ss_pred eeEEEeCCCCccCceECCCcC-E-EEEEEEECCCCCCceeeeCCCccceecccccccccCcccCceEEeCCCCCEEEEeC
Confidence 457888888888888754321 1 123333322211 11111 0 011233567889999999999
Q ss_pred ccccccccCCCcee
Q 024636 212 GEARECFHGVPRIF 225 (265)
Q Consensus 212 G~sR~~~HgVpri~ 225 (265)
+- .+|+|+...
T Consensus 80 s~---l~H~v~p~~ 90 (101)
T PF13759_consen 80 SW---LWHGVPPNN 90 (101)
T ss_dssp TT---SEEEE----
T ss_pred CC---CEEeccCcC
Confidence 73 458886654
No 19
>TIGR02466 conserved hypothetical protein. This family consists of uncharacterized proteins in Caulobacter crescentus CB15, Bdellovibrio bacteriovorus HD100, Synechococcus sp. WH 8102 (2), Silicibacter pomeroyi DSS-3 (2), and Hyphomonas neptunium ATCC 15444. The context of nearby genes differs substantially between members and does point to any specific biological role.
Probab=65.63 E-value=50 Score=29.15 Aligned_cols=78 Identities=17% Similarity=0.081 Sum_probs=43.7
Q ss_pred CCCCceEEeeecCCCCCCCcccCCCCcCCCCCEEEEecCC-ceEEEeecC-------------C-C--CCCCEEEEcCCC
Q 024636 143 EFQPEAAIVNYFGLGDTLGGHLDDMEADWSKPIVSMSLGC-KAIFLLGGK-------------S-R--EDPPLAMFLRSG 205 (265)
Q Consensus 143 ~~~p~a~iVN~Y~~g~~lg~H~D~~e~~~~~PIvSlSLG~-~aiFl~~~~-------------~-~--~~~~~~l~L~sG 205 (265)
.+....+-+|.+..|+..+.|.-.... . ..++=|+... ..-+.|... . + ...-+.+..+.|
T Consensus 92 ~l~i~~~W~ni~~~Gg~h~~H~Hp~~~-l-SgvyYl~~p~~~g~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~v~P~~G 169 (201)
T TIGR02466 92 ELRIQKAWVNILPQGGTHSPHLHPGSV-I-SGTYYVQTPENCGAIKFEDPRLDDMMAAPMRIPNAKRAVQRFVYVPPQEG 169 (201)
T ss_pred ceEEeeEeEEEcCCCCccCceECCCce-E-EEEEEEeCCCCCCceeEecCcchhhhccccccCccccccCccEEECCCCC
Confidence 345577999999999999999865431 1 1222222111 111222110 0 0 011234667999
Q ss_pred cEEEEcccccccccCCCcee
Q 024636 206 DAVLMAGEARECFHGVPRIF 225 (265)
Q Consensus 206 DvlvMsG~sR~~~HgVpri~ 225 (265)
++|++.+- -+|+|+.-.
T Consensus 170 ~lvlFPS~---L~H~v~p~~ 186 (201)
T TIGR02466 170 RVLLFESW---LRHEVPPNE 186 (201)
T ss_pred eEEEECCC---CceecCCCC
Confidence 99999873 358887644
No 20
>COG3826 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.70 E-value=35 Score=30.26 Aligned_cols=82 Identities=28% Similarity=0.325 Sum_probs=48.4
Q ss_pred CCCceEEeeecCCCCCCCcccCCC-CcCCCCCEEEEecCCc------eEEEeecC--CCCCCCEEEEcCCCcEEEEcc--
Q 024636 144 FQPEAAIVNYFGLGDTLGGHLDDM-EADWSKPIVSMSLGCK------AIFLLGGK--SREDPPLAMFLRSGDAVLMAG-- 212 (265)
Q Consensus 144 ~~p~a~iVN~Y~~g~~lg~H~D~~-e~~~~~PIvSlSLG~~------aiFl~~~~--~~~~~~~~l~L~sGDvlvMsG-- 212 (265)
.+|...+ =-|.+||.--.|.|-- |.-|.-- |.|-|-.+ ..|.+-.. .-...+..+.|+.||-+|+.-
T Consensus 122 ~RpTpLl-LqYgpgD~NcLHQDLYGelvFPLQ-vailLsePg~DfTGGEF~lvEQRPR~QSr~~vvpLrqG~g~vFavr~ 199 (236)
T COG3826 122 VRPTPLL-LQYGPGDYNCLHQDLYGELVFPLQ-VAILLSEPGTDFTGGEFVLVEQRPRMQSRPTVVPLRQGDGVVFAVRD 199 (236)
T ss_pred ccCCcee-EEecCCccchhhhhhhhceeeeee-EEEeccCCCCcccCceEEEEecccccccCCceeeccCCceEEEEeec
Confidence 4555544 5689999999999963 4323221 22333222 24555321 123457889999999999963
Q ss_pred --------cccc-cccCCCceecC
Q 024636 213 --------EARE-CFHGVPRIFTD 227 (265)
Q Consensus 213 --------~sR~-~~HgVpri~~~ 227 (265)
..|. ..|||.++.+.
T Consensus 200 RPv~gtrG~~r~~lRHGvS~lRSG 223 (236)
T COG3826 200 RPVQGTRGWYRVPLRHGVSRLRSG 223 (236)
T ss_pred CcccCccCccccchhcchhhhhcc
Confidence 3332 23777776554
No 21
>PRK10572 DNA-binding transcriptional regulator AraC; Provisional
Probab=57.03 E-value=44 Score=30.05 Aligned_cols=70 Identities=19% Similarity=0.276 Sum_probs=47.0
Q ss_pred CCCCCCceEEeeecC---CCCCCCcccCCCCcCCCCCEEEEecCCceEEEeecCCCCCCCEEEEcCCCcEEEEccccccc
Q 024636 141 GEEFQPEAAIVNYFG---LGDTLGGHLDDMEADWSKPIVSMSLGCKAIFLLGGKSREDPPLAMFLRSGDAVLMAGEAREC 217 (265)
Q Consensus 141 ~~~~~p~a~iVN~Y~---~g~~lg~H~D~~e~~~~~PIvSlSLG~~aiFl~~~~~~~~~~~~l~L~sGDvlvMsG~sR~~ 217 (265)
..++.+|+.+|.--. +|..+.+|.|+... ...-++.+-+.+...|.+++. .+.+++||++++....-+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~r~~~-~~~~~i~~~~~G~~~~~~~~~-------~~~~~~g~~i~i~p~~~h~ 86 (290)
T PRK10572 15 LPGYSFNAHLVAGLTPIEAGGYLDFFIDRPLG-MKGYILNLTIRGQGVIFNGGR-------AFVCRPGDLLLFPPGEIHH 86 (290)
T ss_pred CCCCCcceeeeecccccccCCccceeeecCCC-ccceEEEEEEeccEEEecCCe-------eEecCCCCEEEECCCCcee
Confidence 346777776664432 45677778887653 445577777777777777653 3788999999888766443
Q ss_pred c
Q 024636 218 F 218 (265)
Q Consensus 218 ~ 218 (265)
+
T Consensus 87 ~ 87 (290)
T PRK10572 87 Y 87 (290)
T ss_pred e
Confidence 3
No 22
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=54.67 E-value=82 Score=26.99 Aligned_cols=90 Identities=14% Similarity=0.076 Sum_probs=52.4
Q ss_pred chHHHHHHHHHHhhccCCCCCCCCCceEEeeec-CCCCCCCcccCCCCcCCCCCEEEEecCCceEEEeecCCCCCCCEEE
Q 024636 122 IPDALCQLAKRLAAPAMPIGEEFQPEAAIVNYF-GLGDTLGGHLDDMEADWSKPIVSMSLGCKAIFLLGGKSREDPPLAM 200 (265)
Q Consensus 122 ~P~~L~~L~~~l~~~~~~~~~~~~p~a~iVN~Y-~~g~~lg~H~D~~e~~~~~PIvSlSLG~~aiFl~~~~~~~~~~~~l 200 (265)
|++||.+=...|.-... ...-|.-...+|=.+ .+|.+--||.+..+. ++-+==|. ..+.+... +....+
T Consensus 3 ~~~Wi~en~~~l~pPv~-n~~l~~~~~~~v~~vgGpn~R~d~H~~~tdE-----~FyqleG~-~~l~v~d~---g~~~~v 72 (159)
T TIGR03037 3 FKKWIDEHKHLLKPPVG-NQQIWQDSEFMVTVVGGPNARTDFHDDPGEE-----FFYQLKGE-MYLKVTEE---GKREDV 72 (159)
T ss_pred HHHHHHhhHHHhCCCCC-ceEeecCCcEEEEEeCCCCCCcccccCCCce-----EEEEEcce-EEEEEEcC---CcEEEE
Confidence 57788777766633221 001112224555556 778889999965432 22222233 45545432 233469
Q ss_pred EcCCCcEEEEcccccccccCC
Q 024636 201 FLRSGDAVLMAGEARECFHGV 221 (265)
Q Consensus 201 ~L~sGDvlvMsG~sR~~~HgV 221 (265)
.|+.||++++.+...+...+.
T Consensus 73 ~L~eGd~flvP~gvpHsP~r~ 93 (159)
T TIGR03037 73 PIREGDIFLLPPHVPHSPQRP 93 (159)
T ss_pred EECCCCEEEeCCCCCcccccC
Confidence 999999999999887665553
No 23
>COG2850 Uncharacterized conserved protein [Function unknown]
Probab=52.48 E-value=50 Score=32.13 Aligned_cols=88 Identities=15% Similarity=0.295 Sum_probs=56.9
Q ss_pred hHHHHHHHHHHhhccCCCCCCCCCceEEeeecCCCCCCCcccCCCCcCCCCCEEEEecCCceEEEeecCCC---------
Q 024636 123 PDALCQLAKRLAAPAMPIGEEFQPEAAIVNYFGLGDTLGGHLDDMEADWSKPIVSMSLGCKAIFLLGGKSR--------- 193 (265)
Q Consensus 123 P~~L~~L~~~l~~~~~~~~~~~~p~a~iVN~Y~~g~~lg~H~D~~e~~~~~PIvSlSLG~~aiFl~~~~~~--------- 193 (265)
-+.+..|.+.+- ..+.++-|-.+|-|=.+|.+.|.|.|.-. ++-|=.-..+...++....
T Consensus 100 ~p~v~~l~~~Fr-----flP~wr~ddiMIS~a~~GGgvg~H~D~YD------VfliQg~G~RRW~v~~~~~~~~~~~~~d 168 (383)
T COG2850 100 HPEVAALMEPFR-----FLPDWRIDDIMISFAAPGGGVGPHFDQYD------VFLIQGQGRRRWRVGKKCNMSTLCPHPD 168 (383)
T ss_pred CHHHHHHHHHhc-----cCccccccceEEEEecCCCccCccccchh------eeEEeecccceeecCCcccccCcCCCcc
Confidence 445666766552 12467788899998899999999999633 3344322336666654311
Q ss_pred ------CCCCEEEEcCCCcEEEEcccccccccCCCc
Q 024636 194 ------EDPPLAMFLRSGDAVLMAGEARECFHGVPR 223 (265)
Q Consensus 194 ------~~~~~~l~L~sGDvlvMsG~sR~~~HgVpr 223 (265)
........|++||++.+.. |++-|||+-
T Consensus 169 ~~~~~~f~~~~d~vlepGDiLYiPp--~~~H~gvae 202 (383)
T COG2850 169 LLILAPFEPDIDEVLEPGDILYIPP--GFPHYGVAE 202 (383)
T ss_pred hhhcCCCCchhhhhcCCCceeecCC--CCCcCCccc
Confidence 1123467899999998854 555578876
No 24
>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors. The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.
Probab=50.10 E-value=28 Score=32.64 Aligned_cols=62 Identities=18% Similarity=0.221 Sum_probs=37.0
Q ss_pred ceEEeeecCCC---CCCCcccCCCCcCCCCCEEEEecCCceEEEeecCCC----------------CCCCEEEEcCCCcE
Q 024636 147 EAAIVNYFGLG---DTLGGHLDDMEADWSKPIVSMSLGCKAIFLLGGKSR----------------EDPPLAMFLRSGDA 207 (265)
Q Consensus 147 ~a~iVN~Y~~g---~~lg~H~D~~e~~~~~PIvSlSLG~~aiFl~~~~~~----------------~~~~~~l~L~sGDv 207 (265)
-.|-+|.|-.. .++++|.|+.+ ++.|=+.....+.+..... ..+...+.|++||+
T Consensus 112 ~~~~~n~Y~tp~g~~g~~~H~D~~d------vfvlQ~~G~K~W~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~pGD~ 185 (319)
T PF08007_consen 112 CPVGANAYLTPPGSQGFGPHYDDHD------VFVLQLEGRKRWRLYPPPDEPAPLYSDQPFKQLEEFEPVEEVVLEPGDV 185 (319)
T ss_dssp S-EEEEEEEETSSBEESECEE-SSE------EEEEEEES-EEEEEE-SCCCTTTSSCE--TTTCG--STSEEEEE-TT-E
T ss_pred cccceEEEecCCCCCCccCEECCcc------cEEEECCceeEEEECCCCcccccccCCCCccccccCceeEEEEECCCCE
Confidence 56788999643 49999999854 5556665666677765210 12356899999999
Q ss_pred EEEcccc
Q 024636 208 VLMAGEA 214 (265)
Q Consensus 208 lvMsG~s 214 (265)
|.|.-..
T Consensus 186 LYlPrG~ 192 (319)
T PF08007_consen 186 LYLPRGW 192 (319)
T ss_dssp EEE-TT-
T ss_pred EEECCCc
Confidence 9998643
No 25
>COG3128 PiuC Uncharacterized iron-regulated protein [Function unknown]
Probab=44.04 E-value=49 Score=29.49 Aligned_cols=72 Identities=19% Similarity=0.267 Sum_probs=43.4
Q ss_pred EeeecCCCCCCCcccCCCCcC-CCCCEEEEecCCceEEEeecC-CCCC---------CCEEEEcCCCcEEEEcccccccc
Q 024636 150 IVNYFGLGDTLGGHLDDMEAD-WSKPIVSMSLGCKAIFLLGGK-SRED---------PPLAMFLRSGDAVLMAGEARECF 218 (265)
Q Consensus 150 iVN~Y~~g~~lg~H~D~~e~~-~~~PIvSlSLG~~aiFl~~~~-~~~~---------~~~~l~L~sGDvlvMsG~sR~~~ 218 (265)
+.|.|..|+..++|+|..-.. .+.-=.+++---+|...+... +-++ ....+.|..||+|+..+++=
T Consensus 85 ~Fn~Y~eg~~f~fHvDgavr~~hp~~~~~lrtdls~tlfl~DPedYdGGeLVv~dtYg~h~VklPAGdLVlypStSl--- 161 (229)
T COG3128 85 LFNRYQEGDFFGFHVDGAVRSIHPGSGFRLRTDLSCTLFLSDPEDYDGGELVVNDTYGNHRVKLPAGDLVLYPSTSL--- 161 (229)
T ss_pred hhhhccCCCcccccccCcccccCCCCCceeEeeeeeeeecCCccccCCceEEEeccccceEEeccCCCEEEcccccc---
Confidence 459999999999999986532 111111454333444444322 1111 13567889999999999863
Q ss_pred cCCCce
Q 024636 219 HGVPRI 224 (265)
Q Consensus 219 HgVpri 224 (265)
|.|..+
T Consensus 162 H~VtPV 167 (229)
T COG3128 162 HEVTPV 167 (229)
T ss_pred eecccc
Confidence 444443
No 26
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=41.44 E-value=1.2e+02 Score=26.46 Aligned_cols=88 Identities=15% Similarity=0.110 Sum_probs=52.4
Q ss_pred CchHHHHHHHHHHhhccCCCCCCCCCceEEeeec-CCCCCCCcccCCCCcCCCCCEEEEecCCceEEEeecCCCCCCCEE
Q 024636 121 KIPDALCQLAKRLAAPAMPIGEEFQPEAAIVNYF-GLGDTLGGHLDDMEADWSKPIVSMSLGCKAIFLLGGKSREDPPLA 199 (265)
Q Consensus 121 ~~P~~L~~L~~~l~~~~~~~~~~~~p~a~iVN~Y-~~g~~lg~H~D~~e~~~~~PIvSlSLG~~aiFl~~~~~~~~~~~~ 199 (265)
.|+.||.+=...|--... ...-|.-...+|-.+ .+|.+..+|.+..+. + .+-|=....+.+.. ++....
T Consensus 8 n~~~Wieen~~~l~pPv~-n~~l~~~~d~~VmvvgGpn~r~d~H~~~tdE-----~-FyqleG~~~l~v~d---~g~~~~ 77 (177)
T PRK13264 8 NLHKWIEEHRHLLKPPVG-NKQIWQDSDFIVMVVGGPNARTDFHYDPGEE-----F-FYQLEGDMYLKVQE---DGKRRD 77 (177)
T ss_pred cHHHHHHhhHHHhCCCCC-CeeeEcCCCEEEEEEccCCcccccccCCCce-----E-EEEECCeEEEEEEc---CCceee
Confidence 578999888777733221 111122234566667 778899999976543 1 12222224445532 122346
Q ss_pred EEcCCCcEEEEcccccccc
Q 024636 200 MFLRSGDAVLMAGEARECF 218 (265)
Q Consensus 200 l~L~sGDvlvMsG~sR~~~ 218 (265)
+.|+.||++++.+..++..
T Consensus 78 v~L~eGd~fllP~gvpHsP 96 (177)
T PRK13264 78 VPIREGEMFLLPPHVPHSP 96 (177)
T ss_pred EEECCCCEEEeCCCCCcCC
Confidence 8999999999999876544
No 27
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=37.43 E-value=1.1e+02 Score=24.11 Aligned_cols=62 Identities=16% Similarity=0.170 Sum_probs=42.7
Q ss_pred eeecCCCCCCCcccCCCCcCCCCCEEEEecCCceEEEeecCCCCCCCEEEEcCCCcEEEEcccccccccCCCce
Q 024636 151 VNYFGLGDTLGGHLDDMEADWSKPIVSMSLGCKAIFLLGGKSREDPPLAMFLRSGDAVLMAGEARECFHGVPRI 224 (265)
Q Consensus 151 VN~Y~~g~~lg~H~D~~e~~~~~PIvSlSLG~~aiFl~~~~~~~~~~~~l~L~sGDvlvMsG~sR~~~HgVpri 224 (265)
.=.+.+|..+++|.-. . .....+=|-....|.+.+. ...|+.||++++....++++-+++.-
T Consensus 47 ~v~~~~G~~~~~H~hp-~----~~~~~~Vl~G~~~~~~~g~-------~~~l~~Gd~i~ip~g~~H~~~a~~~~ 108 (131)
T COG1917 47 LVTFEPGAVIPWHTHP-L----GEQTIYVLEGEGTVQLEGE-------KKELKAGDVIIIPPGVVHGLKAVEDE 108 (131)
T ss_pred EEEECCCcccccccCC-C----cceEEEEEecEEEEEecCC-------ceEecCCCEEEECCCCeeeeccCCCC
Confidence 3457899999999875 1 2333344445577777632 37799999999999887766555543
No 28
>PF12852 Cupin_6: Cupin
Probab=34.01 E-value=1.9e+02 Score=24.25 Aligned_cols=71 Identities=14% Similarity=0.167 Sum_probs=42.2
Q ss_pred CCceEEeeecCCCCCCCcccCCCCcCCCCCEEEEecCCceEEEeecCCCCCCCEEEEcCCCcEEEEcccccccccCCCce
Q 024636 145 QPEAAIVNYFGLGDTLGGHLDDMEADWSKPIVSMSLGCKAIFLLGGKSREDPPLAMFLRSGDAVLMAGEARECFHGVPRI 224 (265)
Q Consensus 145 ~p~a~iVN~Y~~g~~lg~H~D~~e~~~~~PIvSlSLG~~aiFl~~~~~~~~~~~~l~L~sGDvlvMsG~sR~~~HgVpri 224 (265)
++...+.-....+..=+.|.+..+ ...+.-|.=|+ |.+.+.+.. ..+.|+.||++++.....+....-+..
T Consensus 11 ~l~~~~~~~~~~~~~W~~~~~~~~---~~~fh~V~~G~-~~l~~~~~~-----~~~~L~~GDivllp~g~~H~l~~~~~~ 81 (186)
T PF12852_consen 11 RLRGSLFFRCELCGPWGLRFPGSP---GASFHVVLRGS-CWLRVPGGG-----EPIRLEAGDIVLLPRGTAHVLSSDPDS 81 (186)
T ss_pred CCceEEEEEEEEeCCcEEeccCCC---ceEEEEEECCe-EEEEEcCCC-----CeEEecCCCEEEEcCCCCeEeCCCCCC
Confidence 444444444444444444444332 23455666666 888876522 248899999999999886665444443
No 29
>PF10014 2OG-Fe_Oxy_2: 2OG-Fe dioxygenase; InterPro: IPR018724 Members of this family of hypothetical bacterial proteins have no known function. Some are described as putative biofilm formation or putative agglutination proteins. ; PDB: 3PL0_B.
Probab=32.96 E-value=21 Score=31.13 Aligned_cols=68 Identities=19% Similarity=0.175 Sum_probs=32.0
Q ss_pred CCCCcccCCCCcCCCCCEEEEecCCceEEEeecCCCCCCCEEEEcCCCcEEEEcccccccccCCCceecCC
Q 024636 158 DTLGGHLDDMEADWSKPIVSMSLGCKAIFLLGGKSREDPPLAMFLRSGDAVLMAGEARECFHGVPRIFTDR 228 (265)
Q Consensus 158 ~~lg~H~D~~e~~~~~PIvSlSLG~~aiFl~~~~~~~~~~~~l~L~sGDvlvMsG~sR~~~HgVpri~~~~ 228 (265)
+.-|.|+|.....+..-|-.-..- .+...+....+...-....+++||.+++.. +..||+|..|.+..
T Consensus 114 tPEGiH~DG~d~v~~~li~r~Ni~-GG~s~i~~~~~~~~~~~~l~~p~d~l~~~D--~~~~H~vtpI~~~~ 181 (195)
T PF10014_consen 114 TPEGIHRDGVDFVFIHLINRHNIE-GGESQIYDNDKEILFFFTLLEPGDTLLVDD--RRVWHYVTPIRPVD 181 (195)
T ss_dssp STTSSB--SSSEEEEEEEEEESEE-E--EEEEETTSSEEEEE---STTEEEEEET--TTEEEEE--EEES-
T ss_pred CCCCccCCCCCEEEEEEEcCCCcc-CceEEEEeCCCCcceEEEecCCCCEEEEeC--CcceECCCceecCC
Confidence 567899998775211111111110 112222222221222356779999999987 67899999998763
No 30
>PF03079 ARD: ARD/ARD' family; InterPro: IPR004313 The two acireductone dioxygenase enzymes (ARD and ARD', previously known as E-2 and E-2') from Klebsiella pneumoniae share the same amino acid sequence Q9ZFE7 from SWISSPROT, but bind different metal ions: ARD binds Ni2+, ARD' binds Fe2+ []. ARD and ARD' can be experimentally interconverted by removal of the bound metal ion and reconstitution with the appropriate metal ion. The two enzymes share the same substrate, 1,2-dihydroxy-3-keto-5-(methylthio)pentene, but yield different products. ARD' yields the alpha-keto precursor of methionine (and formate), thus forming part of the ubiquitous methionine salvage pathway that converts 5'-methylthioadenosine (MTA) to methionine. This pathway is responsible for the tight control of the concentration of MTA, which is a powerful inhibitor of polyamine biosynthesis and transmethylation reactions []. ARD yields methylthiopropanoate, carbon monoxide and formate, and thus prevents the conversion of MTA to methionine. The role of the ARD catalysed reaction is unclear: methylthiopropanoate is cytotoxic, and carbon monoxide can activate guanylyl cyclase, leading to increased intracellular cGMP levels [, ]. This family also contains other proteins, whose functions are not well characterised.; GO: 0010309 acireductone dioxygenase [iron(II)-requiring] activity, 0055114 oxidation-reduction process; PDB: 1VR3_A 1ZRR_A 2HJI_A.
Probab=32.01 E-value=63 Score=27.45 Aligned_cols=41 Identities=15% Similarity=0.251 Sum_probs=27.6
Q ss_pred EEEecCCceEEEeecCCCCCCCEEEEcCCCcEEEEcccccccc
Q 024636 176 VSMSLGCKAIFLLGGKSREDPPLAMFLRSGDAVLMAGEARECF 218 (265)
Q Consensus 176 vSlSLG~~aiFl~~~~~~~~~~~~l~L~sGDvlvMsG~sR~~~ 218 (265)
+.+=+..++.|.++.. ++.-+.+.+++||+|++....++++
T Consensus 95 vR~i~~G~g~Fdvr~~--~~~wiri~~e~GDli~vP~g~~HrF 135 (157)
T PF03079_consen 95 VRYIVDGSGYFDVRDG--DDVWIRILCEKGDLIVVPAGTYHRF 135 (157)
T ss_dssp EEEEEECEEEEEEE-T--TCEEEEEEEETTCEEEE-TT--EEE
T ss_pred EEEEeCcEEEEEEEcC--CCEEEEEEEcCCCEEecCCCCceeE
Confidence 3444556699999853 3445679999999999998887665
No 31
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=31.32 E-value=26 Score=24.15 Aligned_cols=53 Identities=17% Similarity=0.208 Sum_probs=34.5
Q ss_pred ecCCCCCCCcccCCCCcCCCCCEEEEecCCceEEEeecCCCCCCCEEEEcCCCcEEEEccccccc
Q 024636 153 YFGLGDTLGGHLDDMEADWSKPIVSMSLGCKAIFLLGGKSREDPPLAMFLRSGDAVLMAGEAREC 217 (265)
Q Consensus 153 ~Y~~g~~lg~H~D~~e~~~~~PIvSlSLG~~aiFl~~~~~~~~~~~~l~L~sGDvlvMsG~sR~~ 217 (265)
.+++|..+++|..... .-+.+=+-.+..+.+++. .+.|+.||++++.....+.
T Consensus 4 ~~~pG~~~~~h~H~~~-----~e~~~vl~G~~~~~~~~~-------~~~l~~Gd~~~i~~~~~H~ 56 (71)
T PF07883_consen 4 TLPPGGSIPPHRHPGE-----DEFFYVLSGEGTLTVDGE-------RVELKPGDAIYIPPGVPHQ 56 (71)
T ss_dssp EEETTEEEEEEEESSE-----EEEEEEEESEEEEEETTE-------EEEEETTEEEEEETTSEEE
T ss_pred EECCCCCCCCEECCCC-----CEEEEEEECCEEEEEccE-------EeEccCCEEEEECCCCeEE
Confidence 3577888899985433 123333334466665432 5889999999999886443
No 32
>TIGR02408 ectoine_ThpD ectoine hydroxylase. Both ectoine and hydroxyectoine are compatible solvents that serve as protectants against osmotic and thermal stresses. A number of genomes synthesize ectoine. This enzyme allows conversion of ectoine to hydroxyectoine, which may be more effective for some purposes, and is found in a subset of ectoine-producing organisms.
Probab=25.51 E-value=3.1e+02 Score=24.86 Aligned_cols=26 Identities=23% Similarity=0.293 Sum_probs=18.2
Q ss_pred EEEcCCCcEEEEcccccccccCCCceecC
Q 024636 199 AMFLRSGDAVLMAGEARECFHGVPRIFTD 227 (265)
Q Consensus 199 ~l~L~sGDvlvMsG~sR~~~HgVpri~~~ 227 (265)
.+.++.||+++|++- .+||--....+
T Consensus 212 ~~~~~aGDvl~f~~~---~~H~S~~N~s~ 237 (277)
T TIGR02408 212 TFTGKAGSAVWFDCN---TMHGSGSNITP 237 (277)
T ss_pred eeccCCceEEEEccc---cccCCCCCCCC
Confidence 467899999999884 35666554443
No 33
>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=23.19 E-value=2e+02 Score=25.23 Aligned_cols=39 Identities=13% Similarity=0.165 Sum_probs=30.4
Q ss_pred EecCCceEEEeecCCCCCCCEEEEcCCCcEEEEcccccccc
Q 024636 178 MSLGCKAIFLLGGKSREDPPLAMFLRSGDAVLMAGEARECF 218 (265)
Q Consensus 178 lSLG~~aiFl~~~~~~~~~~~~l~L~sGDvlvMsG~sR~~~ 218 (265)
+=+-...+|.+... ++....|.+.+||+|.+....++|+
T Consensus 100 y~vaG~GiF~v~~~--d~~~~~i~c~~gDLI~vP~gi~HwF 138 (181)
T COG1791 100 YFVAGEGIFDVHSP--DGKVYQIRCEKGDLISVPPGIYHWF 138 (181)
T ss_pred EEEecceEEEEECC--CCcEEEEEEccCCEEecCCCceEEE
Confidence 33444588888764 5577899999999999999887765
No 34
>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A ....
Probab=21.65 E-value=49 Score=28.53 Aligned_cols=70 Identities=20% Similarity=0.299 Sum_probs=42.7
Q ss_pred ceEEeeecCCCCCCCcccCCCCcCCCCCEEEEecCCceEEEeecCC--------------------------------CC
Q 024636 147 EAAIVNYFGLGDTLGGHLDDMEADWSKPIVSMSLGCKAIFLLGGKS--------------------------------RE 194 (265)
Q Consensus 147 ~a~iVN~Y~~g~~lg~H~D~~e~~~~~PIvSlSLG~~aiFl~~~~~--------------------------------~~ 194 (265)
...-+-.-..|+.-..|.|... -++.+=-|..+..+|-+.. +.
T Consensus 131 ~~~~l~ig~~gs~t~lH~D~~~-----n~~~~i~G~K~~~L~pP~~~~~l~~~~~~~~~~~~~~~d~~~~d~~~~p~~~~ 205 (251)
T PF13621_consen 131 QSSNLWIGPPGSFTPLHYDPSH-----NLLAQIRGRKRWILFPPDDSPNLYPRPDSHGGTVFSWVDPDNPDLERFPKFRK 205 (251)
T ss_dssp CEEEEEEE-TTEEEEEEE-SSE-----EEEEEEESEEEEEEE-GGGGGGCTBETTTST-TCBBSS-TTS--TTT-CGGGG
T ss_pred cccEEEEeCCCceeeeeECchh-----hhhhccCCCEEEEEECCccccccccceecccccceeeeeccChhhhhhhhhcc
Confidence 4444455566789999999833 4666667887777775320 00
Q ss_pred CCCEEEEcCCCcEEEEcccccccccCCCce
Q 024636 195 DPPLAMFLRSGDAVLMAGEARECFHGVPRI 224 (265)
Q Consensus 195 ~~~~~l~L~sGDvlvMsG~sR~~~HgVpri 224 (265)
..+..+.|++||+|.+.. .|||.|-..
T Consensus 206 ~~~~~~~l~pGD~LfiP~---gWwH~V~~~ 232 (251)
T PF13621_consen 206 APPYEVVLEPGDVLFIPP---GWWHQVENL 232 (251)
T ss_dssp --EEEEEEETT-EEEE-T---T-EEEEEES
T ss_pred CceeEEEECCCeEEEECC---CCeEEEEEc
Confidence 135789999999999985 578998554
No 35
>PRK13503 transcriptional activator RhaS; Provisional
Probab=21.38 E-value=1.9e+02 Score=25.56 Aligned_cols=38 Identities=13% Similarity=0.300 Sum_probs=26.4
Q ss_pred EEEecCCceEEEeecCCCCCCCEEEEcCCCcEEEEcccccccccC
Q 024636 176 VSMSLGCKAIFLLGGKSREDPPLAMFLRSGDAVLMAGEARECFHG 220 (265)
Q Consensus 176 vSlSLG~~aiFl~~~~~~~~~~~~l~L~sGDvlvMsG~sR~~~Hg 220 (265)
+.+-+.+.+.+.+++.. ..|++||++++.......+++
T Consensus 38 i~~v~~G~~~~~i~~~~-------~~l~~g~~~~i~~~~~h~~~~ 75 (278)
T PRK13503 38 IVIVEHGTGIHVFNGQP-------YTLSGGTVCFVRDHDRHLYEH 75 (278)
T ss_pred EEEEecCceeeEecCCc-------ccccCCcEEEECCCccchhhh
Confidence 45555566888887642 678999999998766554433
No 36
>PLN02904 oxidoreductase
Probab=20.71 E-value=3.4e+02 Score=25.84 Aligned_cols=58 Identities=14% Similarity=0.048 Sum_probs=34.6
Q ss_pred eEEeeecCCC------CCCCcccCCCCcCCCCCEEEEecCCceEEEeecCCCCCCCEEEEcCCCcEEEEcccc
Q 024636 148 AAIVNYFGLG------DTLGGHLDDMEADWSKPIVSMSLGCKAIFLLGGKSREDPPLAMFLRSGDAVLMAGEA 214 (265)
Q Consensus 148 a~iVN~Y~~g------~~lg~H~D~~e~~~~~PIvSlSLG~~aiFl~~~~~~~~~~~~l~L~sGDvlvMsG~s 214 (265)
..-+|+|++- -+++.|+|-.-. .|+.=. . .=+.+.. +++.-+.+...+|.+||.-|+.
T Consensus 209 ~lrl~~YPp~p~~~~~~g~~~HtD~g~l----TlL~qd--~-~GLQV~~--~~g~Wi~V~p~pgalVVNiGD~ 272 (357)
T PLN02904 209 VMAVNCYPACPEPEIALGMPPHSDFGSL----TILLQS--S-QGLQIMD--CNKNWVCVPYIEGALIVQLGDQ 272 (357)
T ss_pred EEEeeecCCCCCcccccCCcCccCCCce----EEEecC--C-CeeeEEe--CCCCEEECCCCCCeEEEEccHH
Confidence 5678999872 478899997553 111111 1 1233332 2345566777788888887764
Done!