Query 024637
Match_columns 265
No_of_seqs 384 out of 1556
Neff 11.1
Searched_HMMs 29240
Date Mon Mar 25 11:47:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024637.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024637hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 99.9 6.1E-21 2.1E-25 161.4 19.3 180 71-261 286-476 (491)
2 1pw4_A Glycerol-3-phosphate tr 99.9 4.1E-21 1.4E-25 160.6 15.1 181 60-252 26-211 (451)
3 3o7q_A L-fucose-proton symport 99.9 1E-19 3.5E-24 151.6 20.5 182 60-252 24-235 (438)
4 4aps_A DI-OR tripeptide H+ sym 99.8 1.3E-19 4.4E-24 153.3 18.3 181 62-247 13-196 (491)
5 1pw4_A Glycerol-3-phosphate tr 99.8 1.2E-18 4.3E-23 145.5 19.7 177 62-248 252-434 (451)
6 2gfp_A EMRD, multidrug resista 99.8 2.6E-19 9E-24 146.3 12.6 176 67-253 5-180 (375)
7 2xut_A Proton/peptide symporte 99.8 2.4E-18 8.2E-23 146.7 18.5 182 63-248 13-199 (524)
8 2cfq_A Lactose permease; trans 99.8 1.3E-17 4.5E-22 138.2 14.7 148 108-255 259-407 (417)
9 3o7q_A L-fucose-proton symport 99.8 2.8E-17 9.4E-22 136.9 16.6 178 51-244 250-429 (438)
10 4gc0_A D-xylose-proton symport 99.7 3.1E-16 1.1E-20 132.5 15.6 144 108-252 55-224 (491)
11 4aps_A DI-OR tripeptide H+ sym 99.6 2.1E-15 7.2E-20 127.4 10.8 146 108-254 319-478 (491)
12 2cfq_A Lactose permease; trans 99.4 2.1E-14 7.2E-19 119.0 2.4 167 74-251 19-191 (417)
13 2gfp_A EMRD, multidrug resista 99.4 6.4E-14 2.2E-18 114.2 1.4 166 51-232 191-361 (375)
14 2xut_A Proton/peptide symporte 99.2 2.3E-11 7.9E-16 103.5 6.7 117 139-255 374-510 (524)
15 2g9p_A Antimicrobial peptide l 74.5 2.4 8.1E-05 18.3 1.8 14 127-140 2-15 (26)
16 4f4c_A Multidrug resistance pr 46.5 1.4E+02 0.0048 28.6 10.1 10 48-57 58-67 (1321)
17 2dw3_A Intrinsic membrane prot 29.2 91 0.0031 18.3 4.9 29 225-253 31-59 (77)
18 4dve_A Biotin transporter BIOY 23.0 1.7E+02 0.0059 20.9 5.2 21 118-138 103-123 (198)
19 4f4c_A Multidrug resistance pr 21.4 5.5E+02 0.019 24.7 11.8 9 60-68 750-758 (1321)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.87 E-value=6.1e-21 Score=161.37 Aligned_cols=180 Identities=16% Similarity=0.176 Sum_probs=132.2
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHH
Q 024637 71 FFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACI 150 (265)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~ 150 (265)
.+......+.+..|.|.+....+ .+.........+.++..+++.++.+++.||+|||+.++.+...+.+
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~ 354 (491)
T 4gc0_A 286 IFQQFVGINVVLYYAPEVFKTLG-----------ASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAI 354 (491)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSS-----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHhcchHHHHhcC-----------CCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHH
Confidence 33344445566667777664433 4445556666777788899999999999999999999988888887
Q ss_pred HHHHHhh----cchhHHHHHHHHHHHHHH-hhhhhhhhhhcccccCCCcchhhHHHHHhhhhHHHHHHHHHHHHHHhh--
Q 024637 151 FLLPLVF----HQSAVVTTLLLFGVRMCV-TGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVTS-- 223 (265)
Q Consensus 151 ~~~~~~~----~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~~~-- 223 (265)
+++.+.. ....+..++..++...+. .+..++.+.+.+|++|++.|+++.|+.+..+++++++++.+.+.+.+.
T Consensus 355 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~ 434 (491)
T 4gc0_A 355 GMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSW 434 (491)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHH
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7766543 222222233333322222 233467889999999999999999999999999999999988876543
Q ss_pred ----cchhHHHHHHHHHHHHHHHHHhcCCccccccchhhhhh
Q 024637 224 ----CHLRLAVILFEVVFVLAIASSLLFPFETMGRELKDTVD 261 (265)
Q Consensus 224 ----~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 261 (265)
.+....+++++++++++.++.+++.||||+++++|.++
T Consensus 435 ~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~ 476 (491)
T 4gc0_A 435 LVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEA 476 (491)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGG
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHH
Confidence 34556788889999999888888889999999988764
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.86 E-value=4.1e-21 Score=160.58 Aligned_cols=181 Identities=14% Similarity=0.033 Sum_probs=154.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHH
Q 024637 60 LIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKL 139 (265)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~ 139 (265)
.++.+...++..+......+.+..++|.+.++ . .+..+.++..++..++..++.+++|+++||+|||+
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~ 93 (451)
T 1pw4_A 26 RWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-----------G-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRV 93 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSS-----------T-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------h-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchH
Confidence 34555566666666666666677778877632 2 45677899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhh----cchhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhhHHHHHHHH
Q 024637 140 SMVLMFVSACIFLLPLVF----HQSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPL 215 (265)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~ 215 (265)
++.++.++.+++.++..+ .++.+.+++.+++.|++.+...+...++++|.+|+++|+.++++.+....+|.+++|.
T Consensus 94 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~ 173 (451)
T 1pw4_A 94 FLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPL 173 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988 8888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcc-hhHHHHHHHHHHHHHHHHHhcCCcccc
Q 024637 216 VAVGLVTSCH-LRLAVILFEVVFVLAIASSLLFPFETM 252 (265)
Q Consensus 216 i~~~l~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~ 252 (265)
+++++.+..+ |+..+++.+++.++..++.++..||++
T Consensus 174 ~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~ 211 (451)
T 1pw4_A 174 LFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTP 211 (451)
T ss_dssp HHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSS
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCH
Confidence 9999989888 999998888887776666555555543
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.85 E-value=1e-19 Score=151.56 Aligned_cols=182 Identities=12% Similarity=0.065 Sum_probs=151.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHH
Q 024637 60 LIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKL 139 (265)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~ 139 (265)
.++.++..++..+......+......|.+.++. +.+..+.++..+...++..++.++.|+++||+|||+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~ 92 (438)
T 3o7q_A 24 YIIPFALLCSLFFLWAVANNLNDILLPQFQQAF-----------TLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKA 92 (438)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-----------CCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHc-----------CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchH
Confidence 445555666666666666677777788877544 478889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH---hhcchhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhhHHHHHHHHH
Q 024637 140 SMVLMFVSACIFLLPL---VFHQSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLV 216 (265)
Q Consensus 140 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i 216 (265)
++.++.++.+++.++. .+.++.+.+++.+++.|++.+...+...++++|.+|+++|+.++++.+....+|..++|.+
T Consensus 93 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~ 172 (438)
T 3o7q_A 93 GIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVF 172 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999888 6788999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHH-hhcc-------------------------hhHHHHHHHHHHHHHHHHHhcC-Ccccc
Q 024637 217 AVGLV-TSCH-------------------------LRLAVILFEVVFVLAIASSLLF-PFETM 252 (265)
Q Consensus 217 ~~~l~-~~~~-------------------------~~~~~~~~~~~~~i~~~~~~~~-~~~~~ 252 (265)
.+.+. +..+ |++.+++.+++.++..++.++. .||++
T Consensus 173 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~ 235 (438)
T 3o7q_A 173 GQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQ 235 (438)
T ss_dssp TTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCT
T ss_pred HHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccc
Confidence 99998 5544 7778777766665555444433 34443
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.84 E-value=1.3e-19 Score=153.27 Aligned_cols=181 Identities=12% Similarity=0.033 Sum_probs=150.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhh-hchHHH
Q 024637 62 RTTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDK-IGRKLS 140 (265)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~grr~~ 140 (265)
+..+..+...+.....+++...+++.+..+.. ..++.+.+..+.++..++..++..++.++.|+++|| +|||++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~ 87 (491)
T 4aps_A 13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLI-----STGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPA 87 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----chhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHH
Confidence 34455555666667777777777777764420 000125788889999999999999999999999999 899999
Q ss_pred HHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCc--chhhHHHHHhhhhHHHHHHHHHHH
Q 024637 141 MVLMFVSACIFLLPLVFHQSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPA--RTTGFGVASSLGKVGGMVCPLVAV 218 (265)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~--r~~~~g~~~~~~~~g~~~~~~i~~ 218 (265)
+.++.++.+++.+++.+.++.+.+++.+++.|++.+...+...++++|.+|++. |+.++++.+...++|..++|.+.+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 167 (491)
T 4aps_A 88 VFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVG 167 (491)
T ss_dssp HHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHH
Confidence 999999999999999889899999999999999999999999999999999988 777888888999999999999999
Q ss_pred HHHhhcchhHHHHHHHHHHHHHHHHHhcC
Q 024637 219 GLVTSCHLRLAVILFEVVFVLAIASSLLF 247 (265)
Q Consensus 219 ~l~~~~~~~~~~~~~~~~~~i~~~~~~~~ 247 (265)
++.+..||++.+.+.++..+++.+..++.
T Consensus 168 ~l~~~~g~~~~f~~~~~~~~~~~~~~~~~ 196 (491)
T 4aps_A 168 AAQEAAGYHVAFSLAAIGMFIGLLVYYFG 196 (491)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999988777666665555443
No 5
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.82 E-value=1.2e-18 Score=145.49 Aligned_cols=177 Identities=14% Similarity=0.170 Sum_probs=144.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhhh--chHH
Q 024637 62 RTTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKI--GRKL 139 (265)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--grr~ 139 (265)
+.++...+..+......+++..+.|.+.++.. +.+..+.++......++.+++.++.|++.||+ |||+
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~ 321 (451)
T 1pw4_A 252 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVK----------HFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRG 321 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBS----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch
Confidence 34445555555666777778888999986643 47777888888999999999999999999999 9999
Q ss_pred HHHHHHHHHH-HHHHHHhhc--chhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhhH-HHHHHHH
Q 024637 140 SMVLMFVSAC-IFLLPLVFH--QSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKV-GGMVCPL 215 (265)
Q Consensus 140 ~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~-g~~~~~~ 215 (265)
.+.++.++.. ++.+++.+. .+.+...+..++.|++.+...+....++.|.+|++.|+++.|+.+...++ |..++|.
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~ 401 (451)
T 1pw4_A 322 ATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASA 401 (451)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 9888877766 566555554 35666777777888888888888899999999999999999999999999 9999999
Q ss_pred HHHHHHhhcchhHHHHHHHHHHHHHHHHHhcCC
Q 024637 216 VAVGLVTSCHLRLAVILFEVVFVLAIASSLLFP 248 (265)
Q Consensus 216 i~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 248 (265)
+.|++.+..|+...+.+.+++.+++.++.++..
T Consensus 402 ~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 434 (451)
T 1pw4_A 402 IVGYTVDFFGWDGGFMVMIGGSILAVILLIVVM 434 (451)
T ss_dssp HHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988888888888777776666554
No 6
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.80 E-value=2.6e-19 Score=146.27 Aligned_cols=176 Identities=14% Similarity=0.021 Sum_probs=149.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHH
Q 024637 67 LWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFV 146 (265)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~ 146 (265)
.++..+.............|.+.++. +.+..+.++..+...++..++.++.|+++||+|||+++.++.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----------g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~ 73 (375)
T 2gfp_A 5 LVLLVAVGQMAQTIYIPAIADMARDL-----------NVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMS 73 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTS-----------SSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHc-----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHH
Confidence 34444555555555666677776444 4778889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhhHHHHHHHHHHHHHHhhcch
Q 024637 147 SACIFLLPLVFHQSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHL 226 (265)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~~~~~~ 226 (265)
+..++.+...+.++.+.+++.+++.|++.+...+....++.|.+|+++|+++.++.+....+|..++|.+.+++.+..+|
T Consensus 74 ~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 153 (375)
T 2gfp_A 74 IFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNW 153 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccH
Confidence 99999998888889999999999999999999999999999999999999999999999999999999999999988899
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCccccc
Q 024637 227 RLAVILFEVVFVLAIASSLLFPFETMG 253 (265)
Q Consensus 227 ~~~~~~~~~~~~i~~~~~~~~~~~~~~ 253 (265)
+..+.+.++..++..+...+..||+++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (375)
T 2gfp_A 154 RACYLFLLVLCAGVTFSMARWMPETRP 180 (375)
T ss_dssp HHHHHHHHHHHHHHHCCCCCSSCCCST
T ss_pred HHHHHHHHHHHHHHHHHHHHHCcccCC
Confidence 988888877777666655555566543
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.80 E-value=2.4e-18 Score=146.67 Aligned_cols=182 Identities=12% Similarity=0.043 Sum_probs=147.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhhh-chHHHH
Q 024637 63 TTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKI-GRKLSM 141 (265)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-grr~~~ 141 (265)
.++..++..+.....+++...+++.+..+..+.+ ...+.+..+.++..++..++..++.+++|+++||+ |||+++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~----~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~ 88 (524)
T 2xut_A 13 QIPYIIASEACERFSFYGMRNILTPFLMTALLLS----IPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTI 88 (524)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSC----CSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----cccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 3344555566666777777777777764432000 00116778889999999999999999999999999 999999
Q ss_pred HHHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHH---HHhhhhHHHHHHHHHH
Q 024637 142 VLMFVSACIFLLPLVFHQ-SAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGV---ASSLGKVGGMVCPLVA 217 (265)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~---~~~~~~~g~~~~~~i~ 217 (265)
.++.++.+++.++..+.+ +.+.+++.+++.|++.+...+...++++|.+|++.|+++.+. .+...++|.+++|.+.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~ 168 (524)
T 2xut_A 89 LWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSM 168 (524)
T ss_dssp HHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998888887 888888999999999999999999999999999999876666 8888899999999999
Q ss_pred HHHHhhcchhHHHHHHHHHHHHHHHHHhcCC
Q 024637 218 VGLVTSCHLRLAVILFEVVFVLAIASSLLFP 248 (265)
Q Consensus 218 ~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 248 (265)
+++.+..+|+..+.+.+++.++..+..++..
T Consensus 169 ~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~ 199 (524)
T 2xut_A 169 PLLLKNFGAAVAFGIPGVLMFVATVFFWLGR 199 (524)
T ss_dssp THHHHTSCHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHhccccHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999988999998888777766666555443
No 8
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.76 E-value=1.3e-17 Score=138.25 Aligned_cols=148 Identities=13% Similarity=0.068 Sum_probs=119.5
Q ss_pred chHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhhhhhhhhcc
Q 024637 108 NSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTLLLFGVRMCVTGTITVATIYAP 187 (265)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 187 (265)
...+....+..++.+++.++.|+++||+|||+++.++.++.+++.+.+.+.++.+..++..++.+++.+...+..+.+++
T Consensus 259 ~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 338 (417)
T 2cfq_A 259 RVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYIT 338 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666767788889999999999999999999888888887777666666666666666666666666677788999
Q ss_pred cccCCCcchhhHHHH-HhhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhcCCccccccc
Q 024637 188 EIYPTPARTTGFGVA-SSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMGRE 255 (265)
Q Consensus 188 e~~p~~~r~~~~g~~-~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 255 (265)
|.+|++.|+++.++. +...++|++++|.+.|++.+..|+...+.+.+++.+++.++.++..||+++.+
T Consensus 339 ~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~ 407 (417)
T 2cfq_A 339 SQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLS 407 (417)
T ss_dssp HHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCTTC
T ss_pred HHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCchH
Confidence 999999999999995 77778999999999999999888877888888888888777777666665544
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.76 E-value=2.8e-17 Score=136.86 Aligned_cols=178 Identities=10% Similarity=-0.030 Sum_probs=135.0
Q ss_pred cccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHH
Q 024637 51 SFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKL-SSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSA 129 (265)
Q Consensus 51 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 129 (265)
+++++++++..+ ...+..+......+....+.|.+ .++.. +.+..+.+....+..++.+++.++.|
T Consensus 250 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------g~~~~~~~~~~~~~~~~~~~~~~~~g 316 (438)
T 3o7q_A 250 SLSRLARIRHWR---WAVLAQFCYVGAQTACWSYLIRYAVEEIP----------GMTAGFAANYLTGTMVCFFIGRFTGT 316 (438)
T ss_dssp HHHHHTTCSHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHST----------TCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHhChHHH---HHHHHHHHHHHHHHHHHHHHHHHhhhccC----------CcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 455666543333 33333344455566667778888 65543 46777888888888999999999999
Q ss_pred HHHhhhchHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhhHH
Q 024637 130 IIVDKIGRKLSMVLMFVSACIFLLPLVFHQSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVG 209 (265)
Q Consensus 130 ~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g 209 (265)
+++||+|||+++.++.++..++.+++.+.++.+..+ ..++.+++.+..++..+++..|.+|++ |+.+.++.. ...+|
T Consensus 317 ~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g 393 (438)
T 3o7q_A 317 WLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLI-ALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIG 393 (438)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHH-HHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHH
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHH-HHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHH
Confidence 999999999999999999988888877777665443 446778888888899999999999977 888888877 66799
Q ss_pred HHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHHHHH
Q 024637 210 GMVCPLVAVGLVTSCH-LRLAVILFEVVFVLAIASS 244 (265)
Q Consensus 210 ~~~~~~i~~~l~~~~~-~~~~~~~~~~~~~i~~~~~ 244 (265)
+.++|.+.|++.+..| +...+.+.++..++..++.
T Consensus 394 ~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 429 (438)
T 3o7q_A 394 GGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIFA 429 (438)
T ss_dssp HHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988 7777766555444444333
No 10
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.70 E-value=3.1e-16 Score=132.45 Aligned_cols=144 Identities=16% Similarity=0.030 Sum_probs=115.2
Q ss_pred chHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHhh------------------cchhHHHHHHHH
Q 024637 108 NSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLLPLVF------------------HQSAVVTTLLLF 169 (265)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~ 169 (265)
...++..+...++.++|++++|+++||+|||+++.++.++..++.++.++ +++.+.+++.++
T Consensus 55 ~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~ 134 (491)
T 4gc0_A 55 SLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRI 134 (491)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHH
Confidence 44567777788999999999999999999999999999999998887763 678889999999
Q ss_pred HHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhhHHHHHHHHHHHHHHhhc--------chhHHHHHHHHHHHHHH
Q 024637 170 GVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVTSC--------HLRLAVILFEVVFVLAI 241 (265)
Q Consensus 170 ~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~~~~--------~~~~~~~~~~~~~~i~~ 241 (265)
+.|++.|+..+....+++|..|++.|+...++.+....+|..+++.+...+.... +|+..+ ....+..+..
T Consensus 135 l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 213 (491)
T 4gc0_A 135 IGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMF-ASECIPALLF 213 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHH-HTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHh-hhhhhhhhhh
Confidence 9999999999999999999999999999999999999999988888887765432 233233 3333333334
Q ss_pred HHHhcCCcccc
Q 024637 242 ASSLLFPFETM 252 (265)
Q Consensus 242 ~~~~~~~~~~~ 252 (265)
++..+..||+.
T Consensus 214 ~~~~~~~peSp 224 (491)
T 4gc0_A 214 LMLLYTVPESP 224 (491)
T ss_dssp HHHGGGSCCCH
T ss_pred hhhhhcCCCCh
Confidence 44445556764
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.62 E-value=2.1e-15 Score=127.42 Aligned_cols=146 Identities=9% Similarity=-0.093 Sum_probs=108.6
Q ss_pred chHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHH-----HHHHHHHHHHHHHhhc---------chhHHHHHHHHHHHH
Q 024637 108 NSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMV-----LMFVSACIFLLPLVFH---------QSAVVTTLLLFGVRM 173 (265)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~-----~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~g~ 173 (265)
...+.......++.+++.++.+++.||+|||+... ++.++.+++.+++... .+.+..++..++.++
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ 398 (491)
T 4aps_A 319 FPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVIL 398 (491)
T ss_dssp SCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHH
T ss_pred cCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHH
Confidence 34455566667778888999999999999986544 6666666666655542 255666777788888
Q ss_pred HHhhhhhhhhhhcccccCCCcchhhHHHHHhhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhcCCccccc
Q 024637 174 CVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLRLAVILFEVVFVLAIASSLLFPFETMG 253 (265)
Q Consensus 174 ~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 253 (265)
+.+...+....++.|.+|++.|+++.|+.+...++|..++|.+.+++.+. +....+...+++.+++.++.+++.++.++
T Consensus 399 ~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (491)
T 4aps_A 399 GEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK-SEVAYFSYFGLGSVVLGIVLVFLSKRIQG 477 (491)
T ss_dssp HHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS-STTHHHHHTHHHHHHHHHHHHHC------
T ss_pred HHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888899999999999999999999999999999999999999887654 56677777777777777777766655544
Q ss_pred c
Q 024637 254 R 254 (265)
Q Consensus 254 ~ 254 (265)
+
T Consensus 478 ~ 478 (491)
T 4aps_A 478 L 478 (491)
T ss_dssp -
T ss_pred H
Confidence 3
No 12
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.44 E-value=2.1e-14 Score=118.98 Aligned_cols=167 Identities=11% Similarity=0.021 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHH
Q 024637 74 NVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAIIVDKIGRKLSMVLMFVSACIFLL 153 (265)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~ 153 (265)
....+.....++|.+.++.. +.+..+.++..+...++..++++++|+++||+|||+++.++..+..++..
T Consensus 19 ~~~~~~~~~~~~~~~l~~~~----------g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~ 88 (417)
T 2cfq_A 19 YFFIMGAYFPFFPIWLHDIN----------HISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFA 88 (417)
T ss_dssp HHHHHHHHTTTHHHHHHTTT----------CCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHh----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 33344444556777765433 57778889999999999999999999999999999999888776654221
Q ss_pred HH---hhcchhH-HHHHHHHHHHHHHhhhhhhhhhhcccccCC--CcchhhHHHHHhhhhHHHHHHHHHHHHHHhhcchh
Q 024637 154 PL---VFHQSAV-VTTLLLFGVRMCVTGTITVATIYAPEIYPT--PARTTGFGVASSLGKVGGMVCPLVAVGLVTSCHLR 227 (265)
Q Consensus 154 ~~---~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~--~~r~~~~g~~~~~~~~g~~~~~~i~~~l~~~~~~~ 227 (265)
.. .+..... .......+.+++.+..++.......+..+. +.|+.+.|.....+.+|..++|.+.+++.+. +|+
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~-~~~ 167 (417)
T 2cfq_A 89 PFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI-NNQ 167 (417)
T ss_dssp HHHHHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHH-CSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHh-chh
Confidence 11 1111100 011122222222222222222223333322 3567777888888889999999999998874 677
Q ss_pred HHHHHHHHHHHHHHHHHhcCCccc
Q 024637 228 LAVILFEVVFVLAIASSLLFPFET 251 (265)
Q Consensus 228 ~~~~~~~~~~~i~~~~~~~~~~~~ 251 (265)
..+++.++..++..+..++.+||+
T Consensus 168 ~~f~~~~~~~~~~~~~~~~~~~~~ 191 (417)
T 2cfq_A 168 FVFWLGSGCALILAVLLFFAKTDA 191 (417)
T ss_dssp HHHTTTTTTTTTHHHHSCSSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHcCccc
Confidence 777655554444333333444443
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.38 E-value=6.4e-14 Score=114.25 Aligned_cols=166 Identities=11% Similarity=0.010 Sum_probs=115.8
Q ss_pred cccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccCCCCCchHHHHHHHHHhhhhHHHHHHHH
Q 024637 51 SFFMLFSRKLIRTTLLLWVLFFANVFSYYGAVLLTSKLSSGDSKCGSKVLHVDKSKDNSLYVDVFIASLAELPGLILSAI 130 (265)
Q Consensus 51 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 130 (265)
++++++++ +.++...+..+......+.+..+.|.+.++.. +.+..+.+.......++.+++.++.++
T Consensus 191 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------g~~~~~~g~~~~~~~~~~~~~~~~~~~ 257 (375)
T 2gfp_A 191 SYKTLFGN---SGFNCYLLMLIGGLAGIAAFEACSGVLMGAVL----------GLSSMTVSILFILPIPAAFFGAWFAGR 257 (375)
T ss_dssp CSTHHHHH---HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHH----------HHHHHHHHHHHHTHHHHHHHHHHHHHT
T ss_pred HHHHHhcC---cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------CCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555543 23334444444555666667777787764422 456667788888888899999999999
Q ss_pred HHhhhchHHHHHHHHHH-HHHHHH--HHhh--cchhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhh
Q 024637 131 IVDKIGRKLSMVLMFVS-ACIFLL--PLVF--HQSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSL 205 (265)
Q Consensus 131 l~dr~grr~~~~~~~~~-~~~~~~--~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~ 205 (265)
+.||++++. ..+..+ ...+.. .... .++.+..++..++.+++.+...+....+..|.+| +.|+++.|+.+..
T Consensus 258 l~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~ 334 (375)
T 2gfp_A 258 PNKRFSTLM--WQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGL 334 (375)
T ss_dssp TTTHHHHHH--HHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHH
Confidence 999998832 223222 222222 1111 2355556677778888888889999999999999 8899999999999
Q ss_pred hhHHHHHHHHHHHHHHhhcchhHHHHH
Q 024637 206 GKVGGMVCPLVAVGLVTSCHLRLAVIL 232 (265)
Q Consensus 206 ~~~g~~~~~~i~~~l~~~~~~~~~~~~ 232 (265)
.++|..++|.+.+.+.+..++...+..
T Consensus 335 ~~~g~~~~~~~~g~l~~~~~~~~~~~~ 361 (375)
T 2gfp_A 335 QNIGSGVLASLSAMLPQTGQGSLGLLM 361 (375)
T ss_dssp HHHHHHCCSTTCTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCcccHHHHH
Confidence 999999999999998877665544433
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.18 E-value=2.3e-11 Score=103.52 Aligned_cols=117 Identities=12% Similarity=0.008 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHHHHHHhhc---------chhHHHHHHHHHHHHHHhhhhhhhhhhcccccCCCcchhhHHHHHhhhhHH
Q 024637 139 LSMVLMFVSACIFLLPLVFH---------QSAVVTTLLLFGVRMCVTGTITVATIYAPEIYPTPARTTGFGVASSLGKVG 209 (265)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g 209 (265)
+.+.++.++.+++.+++.+. .+.+..++..++.+++.+...+....++.|.+|++.|++++|+.+...++|
T Consensus 374 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g 453 (524)
T 2xut_A 374 RKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVG 453 (524)
T ss_dssp HHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHH
Confidence 45667777777777666552 355666777788888888889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhc----------ch-hHHHHHHHHHHHHHHHHHhcCCccccccc
Q 024637 210 GMVCPLVAVGLVTSC----------HL-RLAVILFEVVFVLAIASSLLFPFETMGRE 255 (265)
Q Consensus 210 ~~~~~~i~~~l~~~~----------~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 255 (265)
+.++|.+.+.+.+.. +. ...+++.+++.+++.++.+++.++.++++
T Consensus 454 ~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (524)
T 2xut_A 454 NLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILAAIVFALYARSYQMQD 510 (524)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHC----------
T ss_pred HHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 999999999887632 11 12255666666676666666665555443
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=74.46 E-value=2.4 Score=18.34 Aligned_cols=14 Identities=36% Similarity=0.517 Sum_probs=11.4
Q ss_pred HHHHHHhhhchHHH
Q 024637 127 LSAIIVDKIGRKLS 140 (265)
Q Consensus 127 ~~g~l~dr~grr~~ 140 (265)
++|.+..++||+.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 46889999999965
No 16
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=46.51 E-value=1.4e+02 Score=28.61 Aligned_cols=10 Identities=20% Similarity=0.115 Sum_probs=7.0
Q ss_pred cccccccccc
Q 024637 48 GFSSFFMLFS 57 (265)
Q Consensus 48 ~~~~~~~l~~ 57 (265)
.+.+++++|+
T Consensus 58 ~~v~~~~Lfr 67 (1321)
T 4f4c_A 58 NKVSIPQLYR 67 (1321)
T ss_dssp SCCCHHHHTT
T ss_pred CCCCHHHHhh
Confidence 3457888885
No 17
>2dw3_A Intrinsic membrane protein PUFX; quinone exchange, photosynthesis, light- harvesting, GXXXG motif, dimerization; NMR {Rhodobacter sphaeroides} PDB: 2ita_A
Probab=29.21 E-value=91 Score=18.35 Aligned_cols=29 Identities=3% Similarity=-0.232 Sum_probs=11.8
Q ss_pred chhHHHHHHHHHHHHHHHHHhcCCccccc
Q 024637 225 HLRLAVILFEVVFVLAIASSLLFPFETMG 253 (265)
Q Consensus 225 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 253 (265)
||...+++...+.+++.-++-.+.||..+
T Consensus 31 g~AAv~f~~~~~~lv~l~~iG~~LPE~Sr 59 (77)
T 2dw3_A 31 GWAGGVFFGTLLLIGFFRVVGRMLPIQEN 59 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTTTTCS
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhCchhcc
Confidence 34334433333333333333344455443
No 18
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=22.96 E-value=1.7e+02 Score=20.94 Aligned_cols=21 Identities=19% Similarity=0.131 Sum_probs=15.6
Q ss_pred HhhhhHHHHHHHHHHhhhchH
Q 024637 118 SLAELPGLILSAIIVDKIGRK 138 (265)
Q Consensus 118 ~~~~~~~~~~~g~l~dr~grr 138 (265)
-++..++.++.|++.||..++
T Consensus 103 LiGF~~aA~v~G~l~~~~~~~ 123 (198)
T 4dve_A 103 RIAWLFTPFLIGFFLKKLKIT 123 (198)
T ss_dssp HHHHHHHHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHHHHHHHHHcccc
Confidence 355567888999999987543
No 19
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=21.38 E-value=5.5e+02 Score=24.65 Aligned_cols=9 Identities=0% Similarity=-0.193 Sum_probs=3.4
Q ss_pred hHHHHHHHH
Q 024637 60 LIRTTLLLW 68 (265)
Q Consensus 60 ~~~~~~~~~ 68 (265)
.+..+++.+
T Consensus 750 ~~~~l~~~~ 758 (1321)
T 4f4c_A 750 HALSLFIGM 758 (1321)
T ss_dssp GHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
Done!