Query 024639
Match_columns 265
No_of_seqs 166 out of 399
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 06:16:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024639.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024639hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2998 Uncharacterized conser 100.0 2.4E-66 5.2E-71 468.1 16.4 258 1-265 37-302 (302)
2 PF04727 ELMO_CED12: ELMO/CED- 100.0 3.7E-49 8.1E-54 335.9 13.4 167 68-236 2-170 (170)
3 KOG2999 Regulator of Rac1, req 100.0 4.1E-32 8.9E-37 261.5 11.4 198 58-258 275-487 (713)
4 PHA02819 hypothetical protein; 34.7 58 0.0013 24.1 3.4 32 207-244 2-33 (71)
5 PF08262 Lem_TRP: Leucophaea m 34.4 17 0.00036 16.9 0.3 6 114-119 3-8 (10)
6 KOG4404 Tandem pore domain K+ 33.7 51 0.0011 31.4 3.7 86 62-153 35-143 (350)
7 PHA02650 hypothetical protein; 30.2 71 0.0015 24.2 3.3 33 207-245 2-34 (81)
8 PHA02844 putative transmembran 29.9 73 0.0016 23.8 3.3 33 207-245 2-34 (75)
9 PHA02975 hypothetical protein; 29.8 77 0.0017 23.3 3.3 33 207-245 2-34 (69)
10 PF11588 DUF3243: Protein of u 28.6 23 0.00049 26.9 0.4 28 74-102 40-67 (81)
11 KOG0673 Thymidylate synthase [ 27.7 71 0.0015 29.2 3.5 89 104-200 111-233 (293)
12 PF03735 ENT: ENT domain; Int 26.0 1.1E+02 0.0023 22.7 3.6 31 61-95 26-56 (73)
13 KOG0436 Methionyl-tRNA synthet 24.7 64 0.0014 32.1 2.8 48 54-101 99-150 (578)
14 PHA02692 hypothetical protein; 23.4 1.2E+02 0.0025 22.5 3.3 33 207-245 2-34 (70)
No 1
>KOG2998 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=2.4e-66 Score=468.08 Aligned_cols=258 Identities=51% Similarity=0.821 Sum_probs=241.4
Q ss_pred CCCCCCceeEEe-ecccCCCCCCCCCCCccchhccchhhhcc-----ccccccccccCCCCCCCCCCCHHHHHHHHHHHH
Q 024639 1 MDERGGSFVAVR-RISQGLDRGNTCHSTSAEVVAGSAAWLGR-----GLSCVCAQRRESDPRPSFDLTPAQEECLQRLQL 74 (265)
Q Consensus 1 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~c~~~~~~~~~~~~~~~L~~~Q~~~L~~L~~ 74 (265)
|++..|..++|+ +.|.+..-+..-+.++.+...|+.+|+|+ ++.|.+...+..+...|..+.+.+.++++.+++
T Consensus 37 ~~~~~g~~ra~~~e~sl~~~~~~~~~~ass~~~~~~~~~~~~v~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~l~~~~e~ 116 (302)
T KOG2998|consen 37 TDAYEGASRAVRTETSLGQEKPLLGSTASSEAPPGLISFLGRVMVDKGIKNIVDPNRRIDLAACRHLIPGYRELLQRLEE 116 (302)
T ss_pred hcCCCCCcceeecchhhhhhhhhhhcccccccChhhhhhhHHHHHHhccccCCCcccchhhhhccccccCcHHHHHHHHH
Confidence 467889999999 78888888888888899999999999999 999999999999999999999999999999999
Q ss_pred hhccccCCCCHHHHHHHHHHHHHhCCCcccchhhhhHHhhccCCCCCCCCCCCchhHhHHhhHHHHHhccH-HHHHHHHh
Q 024639 75 RIDVAYDSSIPEHREALRALWNAAFPDEELRDLISEQWKEMGWQGKDPSTDFRGGGFISLENLLYLARNFP-SFQDLLRK 153 (265)
Q Consensus 75 ~~~~~~d~~n~~H~~~L~~Lw~~~~~~~~~~~~~s~~Wk~lGFQg~dP~TDFRg~GiLgL~~LlyF~~~~~-~~~~il~~ 153 (265)
++++|||.+|++|+++|++||+.++|+++++++++++|++|||||+||+|||||+|+|||+||+||+++|| .+++++.+
T Consensus 117 ~~~~~yDs~n~~H~e~L~~lwk~~~p~~~l~~lvs~qW~emGfQG~dPsTDFRG~GfL~LeNLlyFa~~~~~~aq~lL~~ 196 (302)
T KOG2998|consen 117 LRQEPYDSDNPDHEELLLDLWKLLYPDKELPGLVSKQWKEMGFQGADPSTDFRGMGFLGLENLLYFARTYPTSAQRLLLK 196 (302)
T ss_pred HHhccCCCCChhHHHHHHHHHHHhCCCCccchhHHHHHHHhccCCCCCCcccccchHHHHHHHHHHHHhhhHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred hcCCCCCCCccHHHHHHHHHHHHHHHhhhccCCCc-cccccccccccccchhhHHHHHHHHHHHHHHHHhhCCCCcccHH
Q 024639 154 QEGDRSVWEYPFAVAGVNITFMLIQMLDLEAVKPR-TMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAMRASYMDFN 232 (265)
Q Consensus 154 q~~~~~~~~yPFAvagINIT~~L~~~L~l~~~~~~-~~~~~~f~~ll~~~~~aF~eLy~~~F~~f~~~W~~~~at~mdF~ 232 (265)
|. ++.|+|||||||||||+|++++|++++++.. ++....| +++.+|+.|||++|..||++|+++++||||||
T Consensus 197 s~--~~r~eYpfAVvgINIT~m~~qmL~~eal~~~~~~~~~~~-----~~~~~F~~lYc~af~~~d~~Wl~~~~simefn 269 (302)
T KOG2998|consen 197 SR--HPRWEYPFAVVGINITFMAIQMLDLEALKKHFNNIVKVF-----ETEPAFDLLYCYAFLEFDKQWLEQRATIMEFN 269 (302)
T ss_pred cC--CCccCCceEEEeecHHHHHHHHHHhhhcccccccccccc-----ccHHHHHHHHHHHHHHHHHHHHHhhccHHHHH
Confidence 75 4569999999999999999999999998543 3333333 78899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcccCcCCcCCCCCcccccC
Q 024639 233 TVMKSTRRQLERELLLEDVTRLEDLPSYSLLSR 265 (265)
Q Consensus 233 ~Vl~~~r~qL~r~L~~~~v~~i~d~~~~~~~~~ 265 (265)
.|++++|.|++++|++.|+..++|+|+|++|.+
T Consensus 270 ~Vlk~~~~qler~L~~~d~~~~~~lp~~~~L~~ 302 (302)
T KOG2998|consen 270 TVLKSFRRQLERELSLDDVLLITDLPAFNLLLQ 302 (302)
T ss_pred HHHHHHHHHHHHhhhhhhhcccccchhhhhhcC
Confidence 999999999999999999999999999999964
No 2
>PF04727 ELMO_CED12: ELMO/CED-12 family; InterPro: IPR006816 This entry represents the ELMO (EnguLfment and Cell MOtility) domain, which is found in a number of eukaryotic proteins involved in the cytoskeletal rearrangements required for phagocytosis of apoptotic cells and cell motility, including CED-12, ELMO-1 and ELMO-2. ELMO-1 and ELMO-2 are components of signalling pathways that regulate phagocytosis and cell migration and are mammalian orthologues of the Caenorhabditis elegans gene, ced-12 that is required for the engulfment of dying cells and cell migration. ELMO-1/2 act in association with DOCK1 and CRK. ELMO-1/2 interact with the SH3-domain of DOCK1 via an SH3-binding site to enhance the guanine nucleotide exchange factor (GEF) activity of DOCK1. ELMO-1/2 could be part of a complex with DOCK1 and Rac1 that could be required to activate Rac Rho small GTPases. Regulatory GTPases in the Ras superfamily employ a cycle of alternating GTP binding and hydrolysis, controlled by guanine nucleotide exchange factors and GTPase-activating proteins (GAPs), as essential features of their actions in cells. Within the Ras superfamily, the Arf family is composed of 30 members, including 22 Arf-like (Arl) proteins. The ELMO domain has been proposed to be a GAP domain for ARL2 and other members of the Arf family [].; GO: 0006909 phagocytosis, 0005856 cytoskeleton
Probab=100.00 E-value=3.7e-49 Score=335.95 Aligned_cols=167 Identities=43% Similarity=0.771 Sum_probs=151.1
Q ss_pred HHHHHHHhhccccCCCCHHHHHHHHHHHHHhCCCcccchhhhhHHhhccCCCCCCCCCCCchhHhHHhhHHHHHhccH-H
Q 024639 68 CLQRLQLRIDVAYDSSIPEHREALRALWNAAFPDEELRDLISEQWKEMGWQGKDPSTDFRGGGFISLENLLYLARNFP-S 146 (265)
Q Consensus 68 ~L~~L~~~~~~~~d~~n~~H~~~L~~Lw~~~~~~~~~~~~~s~~Wk~lGFQg~dP~TDFRg~GiLgL~~LlyF~~~~~-~ 146 (265)
.|+.|++++++|||++|++|+++|++||++++++.+.+++.+++|++|||||+||+|||||+|+|||+||+||+++|| .
T Consensus 2 ~l~~l~~~~~~~~d~~~~~h~~~L~~Lw~~~~~~~~~~~~~~~~W~~lGFQ~~dP~tDFR~~G~LgL~~L~yf~~~~~~~ 81 (170)
T PF04727_consen 2 TLNLLRALAKTPFDPENPEHEELLQELWNALFPDEPPFSRISEHWKELGFQGEDPATDFRGMGLLGLDCLLYFAENYPDE 81 (170)
T ss_pred hHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCCCccCCcCccHHHHhCCCCCCcHHHHhhhhHHHHHHHHHHHHHChHH
Confidence 578899999999999999999999999999999988888999999999999999999999999999999999999999 9
Q ss_pred HHHHHHhhcCCCCCCCccHHHHHHHHHHHHHHHhhhccCCCccccccccccc-cccchhhHHHHHHHHHHHHHHHHhhCC
Q 024639 147 FQDLLRKQEGDRSVWEYPFAVAGVNITFMLIQMLDLEAVKPRTMVGATFLKF-LSENESAFDLLYCITFKLMDHQWLAMR 225 (265)
Q Consensus 147 ~~~il~~q~~~~~~~~yPFAvagINIT~~L~~~L~l~~~~~~~~~~~~f~~l-l~~~~~aF~eLy~~~F~~f~~~W~~~~ 225 (265)
+++++.++.++.+..+||||+||||||.+|+++|+++...+.... .+... +.+.+.+|++|||++|..|+++|++++
T Consensus 82 ~~~~l~~~~~~~~~~~~Pfa~~~invt~~l~~~l~~~~~~~~~~~--~~~~~~~~~~~~~f~elf~~~f~~f~~~W~~~~ 159 (170)
T PF04727_consen 82 FRRILREQSSRSDENWYPFAVASINVTSLLCELLKLGALDSEFYK--RINFLSFFSSLEAFEELFCACFQLFDRTWKEMN 159 (170)
T ss_pred HHHHHHHccCcccccccHHHHHHHHHHHHHHHHHhhcccCHHHhh--cccccccCccHHHHHHHHHHHHHHHHHHHccCC
Confidence 999999998766678999999999999999999999765433322 22222 567789999999999999999999999
Q ss_pred CCcccHHHHHH
Q 024639 226 ASYMDFNTVMK 236 (265)
Q Consensus 226 at~mdF~~Vl~ 236 (265)
+|+|||++|++
T Consensus 160 at~~dF~~V~~ 170 (170)
T PF04727_consen 160 ATIMDFNKVLK 170 (170)
T ss_pred CCHHHHHhhcC
Confidence 99999999975
No 3
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=99.97 E-value=4.1e-32 Score=261.53 Aligned_cols=198 Identities=28% Similarity=0.515 Sum_probs=181.6
Q ss_pred CCCCCHHHHHHHHHHHHhhccccCCCCHHHHHHHHHHHHHhCCCccc-----------chhhhhHHhhccCCC-CCCCCC
Q 024639 58 SFDLTPAQEECLQRLQLRIDVAYDSSIPEHREALRALWNAAFPDEEL-----------RDLISEQWKEMGWQG-KDPSTD 125 (265)
Q Consensus 58 ~~~L~~~Q~~~L~~L~~~~~~~~d~~n~~H~~~L~~Lw~~~~~~~~~-----------~~~~s~~Wk~lGFQg-~dP~TD 125 (265)
..+|+.+|...+..+..|+.++.|+.+.+..+.++.+-..+|.++.. .....+..|.+||.+ .||+.|
T Consensus 275 ~~~lyvlq~L~~glle~Rm~~~md~~~q~qr~~i~~lr~iaf~~~~~~~~~g~~~e~rk~l~~~~ykklgf~n~~npa~d 354 (713)
T KOG2999|consen 275 PIQLYVLQVLTLGLLEVRMRTKMDPQDQVQRELISELRRIAFDDESEPSRRGGGAEVRKILDIESYKKLGFENRINPAQD 354 (713)
T ss_pred hHHHHHHHHHHHhhhHHhhhcccchhhHHHHHHHHHHHhcCcccccccccCCcchhhhhhhhHHHHHhhcccccCChHHh
Confidence 35899999999999999999999999999999999999999986431 235678999999999 999999
Q ss_pred CC--chhHhHHhhHHHHHhccH-HHHHHHHhhcCCCCCCCccHHHHHHHHHHHHHHHhhhccCCCccccccccccccccc
Q 024639 126 FR--GGGFISLENLLYLARNFP-SFQDLLRKQEGDRSVWEYPFAVAGVNITFMLIQMLDLEAVKPRTMVGATFLKFLSEN 202 (265)
Q Consensus 126 FR--g~GiLgL~~LlyF~~~~~-~~~~il~~q~~~~~~~~yPFAvagINIT~~L~~~L~l~~~~~~~~~~~~f~~ll~~~ 202 (265)
|- ++|+|+|+||+||+++|| .+.+++.+++++.+.++|||+..+|.+|.|||++|+.+. +++.....|.++||.+
T Consensus 355 f~etppG~LAldnMvyFA~~~~~~y~riVlENSsRedkhecpfgr~sieltk~lcEilrVge--~p~E~~~df~pmfFth 432 (713)
T KOG2999|consen 355 FGETPPGRLALDNMVYFARNSPQDYRRIVLENSSREDKHECPFGRMSIELTKILCELLRVGE--PPDELDRDFIPMFFTH 432 (713)
T ss_pred cccCCchHHHHHHHHHHHHhCHHHHHHHHHhcccccccCcCCcCccHHHHHHHHHHHHhcCC--CchhhcCccceeeecC
Confidence 96 999999999999999999 999999999999999999999999999999999999975 4555556799999999
Q ss_pred hhhHHHHHHHHHHHHHHHHhhCCCCcccHHHHHHHHHHHHHHhhcccCcCCcCCCC
Q 024639 203 ESAFDLLYCITFKLMDHQWLAMRASYMDFNTVMKSTRRQLERELLLEDVTRLEDLP 258 (265)
Q Consensus 203 ~~aF~eLy~~~F~~f~~~W~~~~at~mdF~~Vl~~~r~qL~r~L~~~~v~~i~d~~ 258 (265)
+..|+++||+|.++|+++|++|+||-.||++|+.+||+||.|+|..+ +.+++++.
T Consensus 433 d~~Fee~FciciqLlnkTWKEMrAt~edf~KVmqVVrEQl~r~L~~k-p~sld~fk 487 (713)
T KOG2999|consen 433 DTPFEELFCICVQLLNRTWKEMRATAEDFEKVMQVVREQLRRALKRK-PQSLDQFK 487 (713)
T ss_pred CCcHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHHHHhccC-CccHHHHH
Confidence 99999999999999999999999999999999999999999999865 77777654
No 4
>PHA02819 hypothetical protein; Provisional
Probab=34.71 E-value=58 Score=24.09 Aligned_cols=32 Identities=31% Similarity=0.507 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHhhCCCCcccHHHHHHHHHHHHHH
Q 024639 207 DLLYCITFKLMDHQWLAMRASYMDFNTVMKSTRRQLER 244 (265)
Q Consensus 207 ~eLy~~~F~~f~~~W~~~~at~mdF~~Vl~~~r~qL~r 244 (265)
++||+++|=.| |..+-.||+..++.+|+-|..
T Consensus 2 DKLYaaiFGvF------msS~DdDFnnFI~VVksVLtd 33 (71)
T PHA02819 2 DKLYSAIFGVF------MSSSDDDFNNFINVVKSVLNN 33 (71)
T ss_pred hhHHHHHHHhh------hCCchhHHHHHHHHHHHHHcC
Confidence 67999999888 677888999999999887765
No 5
>PF08262 Lem_TRP: Leucophaea maderae tachykinin-related peptide ; InterPro: IPR013206 These peptides are designated Leucophaea maderae (Madeira cockroach) tachykinin-related peptides (Lem TRPs). Some were isolated from the midgut of L. maderae, whereas others appear to be brain specific. The Lem TRPs of the brain are myotropic and induce increases in the amplitude and frequency of spontaneous contractions and tonus of hindgut muscle in L. maderae []. They were also isolated from brain-corpora, cardiaca-corpora, allata-suboesophageal ganglion extracts of Locusta migratoria (Migratory locust). They stimulate visceral muscle contractions of the oviduct and the foregut of L. migratoria [].
Probab=34.36 E-value=17 Score=16.93 Aligned_cols=6 Identities=50% Similarity=1.248 Sum_probs=4.7
Q ss_pred hccCCC
Q 024639 114 EMGWQG 119 (265)
Q Consensus 114 ~lGFQg 119 (265)
.|||||
T Consensus 3 smgf~g 8 (10)
T PF08262_consen 3 SMGFHG 8 (10)
T ss_pred cccccc
Confidence 478987
No 6
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=33.66 E-value=51 Score=31.42 Aligned_cols=86 Identities=23% Similarity=0.327 Sum_probs=56.1
Q ss_pred CHHHHHHHHHHHHhhccccCCCCHHHHHHHHHHHHHhCCCcccchhhhhHHh-------------hccCCCCCCCCCCC-
Q 024639 62 TPAQEECLQRLQLRIDVAYDSSIPEHREALRALWNAAFPDEELRDLISEQWK-------------EMGWQGKDPSTDFR- 127 (265)
Q Consensus 62 ~~~Q~~~L~~L~~~~~~~~d~~n~~H~~~L~~Lw~~~~~~~~~~~~~s~~Wk-------------~lGFQg~dP~TDFR- 127 (265)
...++++++.-++..+.+|+-++++-+.+..-+ ..+.|. ..+.+|| .|||-.+.|+||--
T Consensus 35 E~~~r~~l~~~~~~~~~kyn~s~~d~r~~er~i-~~s~ph-----~ag~qWkF~GaFYFa~TVItTIGyGhstP~T~~GK 108 (350)
T KOG4404|consen 35 EARERERLERRLANLKRKYNLSEEDYRELERVI-LKSEPH-----KAGPQWKFAGAFYFATTVITTIGYGHSTPSTDGGK 108 (350)
T ss_pred hHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHH-HhcCcc-----ccccccccCcceEEEEEEEeeeccCCCCCCCcCce
Confidence 456778888888999999999888776666555 333332 4567887 58999999999954
Q ss_pred ----chhHhHHhh-HHHH---HhccH-HHHHHHHh
Q 024639 128 ----GGGFISLEN-LLYL---ARNFP-SFQDLLRK 153 (265)
Q Consensus 128 ----g~GiLgL~~-LlyF---~~~~~-~~~~il~~ 153 (265)
.-|++|... |+.| -++-. ..+.+++.
T Consensus 109 ~Fcm~Yal~Gipl~lvmFqs~gERlnt~~ayil~~ 143 (350)
T KOG4404|consen 109 AFCMFYALVGIPLTLVMFQSIGERLNTFVAYILRR 143 (350)
T ss_pred ehhhhHHHhcCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 334544432 4443 45544 34444443
No 7
>PHA02650 hypothetical protein; Provisional
Probab=30.18 E-value=71 Score=24.18 Aligned_cols=33 Identities=30% Similarity=0.509 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHhhCCCCcccHHHHHHHHHHHHHHh
Q 024639 207 DLLYCITFKLMDHQWLAMRASYMDFNTVMKSTRRQLERE 245 (265)
Q Consensus 207 ~eLy~~~F~~f~~~W~~~~at~mdF~~Vl~~~r~qL~r~ 245 (265)
++||+++|=.| |..+-.||+..++.+|+-|...
T Consensus 2 DKLYaaiFGVF------msS~DdDFnnFI~VVkSVLtD~ 34 (81)
T PHA02650 2 DKLYAAIFGVF------MSSTDDDFNNFIDVVKSVLSDE 34 (81)
T ss_pred hhHHHHHHhhh------cCCcHHHHHHHHHHHHHHHcCC
Confidence 67999999888 6778889999999998877654
No 8
>PHA02844 putative transmembrane protein; Provisional
Probab=29.94 E-value=73 Score=23.83 Aligned_cols=33 Identities=24% Similarity=0.486 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHhhCCCCcccHHHHHHHHHHHHHHh
Q 024639 207 DLLYCITFKLMDHQWLAMRASYMDFNTVMKSTRRQLERE 245 (265)
Q Consensus 207 ~eLy~~~F~~f~~~W~~~~at~mdF~~Vl~~~r~qL~r~ 245 (265)
++||+++|=.| |..+-.||+..++.+|+-|...
T Consensus 2 DKLYaaiFGVF------msS~DdDFnnFI~vVksVLtd~ 34 (75)
T PHA02844 2 DKLYTAIFGVF------LSSENEDFNNFIDVVKSVLSDD 34 (75)
T ss_pred hhHHHHHHhhh------cCCchHHHHHHHHHHHHHHcCC
Confidence 67999999888 6778889999999998877654
No 9
>PHA02975 hypothetical protein; Provisional
Probab=29.82 E-value=77 Score=23.34 Aligned_cols=33 Identities=15% Similarity=0.342 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHhhCCCCcccHHHHHHHHHHHHHHh
Q 024639 207 DLLYCITFKLMDHQWLAMRASYMDFNTVMKSTRRQLERE 245 (265)
Q Consensus 207 ~eLy~~~F~~f~~~W~~~~at~mdF~~Vl~~~r~qL~r~ 245 (265)
++||+++|=.| |..+-.||+..++.+|+-|...
T Consensus 2 dKLYaaiFGvF------msS~DdDF~nFI~vVksVLtdk 34 (69)
T PHA02975 2 EKLFTGTYGVF------LESNDSDFEDFIDTIMHVLTGK 34 (69)
T ss_pred hhHHHHHHHhh------cCCChHHHHHHHHHHHHHHcCC
Confidence 67999999887 6777889999999998776543
No 10
>PF11588 DUF3243: Protein of unknown function (DUF3243); InterPro: IPR021637 This family of proteins with unknown function includes uncharacterised proteins ymfJ and yflH. The family appears to be restricted to Firmicutes.; PDB: 3D0W_B.
Probab=28.59 E-value=23 Score=26.94 Aligned_cols=28 Identities=29% Similarity=0.450 Sum_probs=15.8
Q ss_pred HhhccccCCCCHHHHHHHHHHHHHhCCCc
Q 024639 74 LRIDVAYDSSIPEHREALRALWNAAFPDE 102 (265)
Q Consensus 74 ~~~~~~~d~~n~~H~~~L~~Lw~~~~~~~ 102 (265)
....-.+||.|++ +++|++||+.+..++
T Consensus 40 dyLA~~vdP~N~E-erlLkELW~va~e~E 67 (81)
T PF11588_consen 40 DYLAKNVDPKNPE-ERLLKELWDVADEEE 67 (81)
T ss_dssp HHHHT-----SHH-HHHHHHHHHC--HHH
T ss_pred HHHHhcCCCCCHH-HHHHHHHHHhCCHHH
Confidence 4456678999985 699999999976544
No 11
>KOG0673 consensus Thymidylate synthase [Nucleotide transport and metabolism]
Probab=27.66 E-value=71 Score=29.22 Aligned_cols=89 Identities=21% Similarity=0.396 Sum_probs=65.2
Q ss_pred cchhhhhHHhhccCCCCCCCCCCCchhHhHHhhHHHHHhccHHHHHHHHhhcC---------------------------
Q 024639 104 LRDLISEQWKEMGWQGKDPSTDFRGGGFISLENLLYLARNFPSFQDLLRKQEG--------------------------- 156 (265)
Q Consensus 104 ~~~~~s~~Wk~lGFQg~dP~TDFRg~GiLgL~~LlyF~~~~~~~~~il~~q~~--------------------------- 156 (265)
+....+=+|+..|=+=.|=.+|+-|-|+=-|...+-=.++.|.=++|++..-.
T Consensus 111 lgpvyGfqWrHfgA~Y~~~~~dy~gqgvdQL~~vI~~ik~NP~drRIimsAwNP~dl~~malpPCH~~~QFyV~~GelSc 190 (293)
T KOG0673|consen 111 LGPVYGFQWRHFGARYEDCDSDYTGQGVDQLADVINKIKNNPDDRRIIMSAWNPLDLGKMALPPCHTFCQFYVANGELSC 190 (293)
T ss_pred cccccceeeeecCccccccccccccccHHHHHHHHHHHhcCCccceeeeeccCccccccccCCccceeeEEEecCCeeee
Confidence 34556789999999999999999999999999999999999866666654321
Q ss_pred ------CCCCCCccHHHHHHH-HHHHHHHHhhhccCCCccccccccccccc
Q 024639 157 ------DRSVWEYPFAVAGVN-ITFMLIQMLDLEAVKPRTMVGATFLKFLS 200 (265)
Q Consensus 157 ------~~~~~~yPFAvagIN-IT~~L~~~L~l~~~~~~~~~~~~f~~ll~ 200 (265)
....-+-||-+|+-. +|.|+..+.++.. ..|...+.
T Consensus 191 q~YQrS~dmglGVPFnIASYsLLT~miAhv~gl~p--------gdfiH~lG 233 (293)
T KOG0673|consen 191 QMYQRSGDMGLGVPFNIASYSLLTCMIAHVCGLKP--------GDFIHVLG 233 (293)
T ss_pred hhhhhccccccCccchhHHHHHHHHHHHHHhCCCC--------CceEEecc
Confidence 123346788888766 4667777766643 35666664
No 12
>PF03735 ENT: ENT domain; InterPro: IPR005491 This entry represents a protein regulator which is able to repress transcription, possibly via its interaction with a multi protein chromatin re-modeling complex that modifies the chromatin. Its interaction with BRCA2 suggests that it may play a central role in the DNA repair function of BRCA2 []. ; PDB: 1UZ3_B 1UTU_B 2FMM_E.
Probab=26.00 E-value=1.1e+02 Score=22.74 Aligned_cols=31 Identities=35% Similarity=0.449 Sum_probs=22.9
Q ss_pred CCHHHHHHHHHHHHhhccccCCCCHHHHHHHHHHH
Q 024639 61 LTPAQEECLQRLQLRIDVAYDSSIPEHREALRALW 95 (265)
Q Consensus 61 L~~~Q~~~L~~L~~~~~~~~d~~n~~H~~~L~~Lw 95 (265)
|+..|+..|..|+...++ +|.+|...|..+-
T Consensus 26 lsweke~lLt~Lr~~L~I----S~e~H~~~l~~~~ 56 (73)
T PF03735_consen 26 LSWEKEKLLTELRKELNI----SDEEHREELRRAV 56 (73)
T ss_dssp --HHHHHHHHHHHHHTT------HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCC----CcHHHHHHHHHHh
Confidence 899999999999877765 5888988888773
No 13
>KOG0436 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=24.72 E-value=64 Score=32.12 Aligned_cols=48 Identities=19% Similarity=0.441 Sum_probs=40.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhccccC----CCCHHHHHHHHHHHHHhCCC
Q 024639 54 DPRPSFDLTPAQEECLQRLQLRIDVAYD----SSIPEHREALRALWNAAFPD 101 (265)
Q Consensus 54 ~~~~~~~L~~~Q~~~L~~L~~~~~~~~d----~~n~~H~~~L~~Lw~~~~~~ 101 (265)
+.....+|...-.+.++.|-+.+++.|+ .+||.|+...+++|..++.+
T Consensus 99 nG~~P~e~cDr~s~~f~qL~k~~gi~yt~FIRTTdpkH~a~Vqefw~~~~kn 150 (578)
T KOG0436|consen 99 NGRNPPELCDRISQSFRQLWKDAGIAYTKFIRTTDPKHEAIVQEFWARVFKN 150 (578)
T ss_pred cCCChHHHHhhhhHHHHHHHHHhCcchhheeecCCchHHHHHHHHHHHHHhC
Confidence 4444577888888899999999999987 58999999999999998764
No 14
>PHA02692 hypothetical protein; Provisional
Probab=23.44 E-value=1.2e+02 Score=22.48 Aligned_cols=33 Identities=24% Similarity=0.377 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHhhCCCCcccHHHHHHHHHHHHHHh
Q 024639 207 DLLYCITFKLMDHQWLAMRASYMDFNTVMKSTRRQLERE 245 (265)
Q Consensus 207 ~eLy~~~F~~f~~~W~~~~at~mdF~~Vl~~~r~qL~r~ 245 (265)
++||+++|=.| |..+-.||+..++.+|+-+...
T Consensus 2 DKLyaaifGVF------mss~DdDF~~Fi~vVksVLtDk 34 (70)
T PHA02692 2 DKLYAGVFGSF------LSNSDEDFEEFLNIVRTVMTEK 34 (70)
T ss_pred hhHHHHHHHhh------cCCCHHHHHHHHHHHHHHHcCC
Confidence 67899999887 5555669999999998887655
Done!