Query 024639
Match_columns 265
No_of_seqs 166 out of 399
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 11:49:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024639.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024639hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1uz3_A EMSY protein; chromatin 29.7 58 0.002 24.7 4.0 30 61-94 43-72 (102)
2 3d0w_A YFLH protein; GRAM-posi 27.3 24 0.00082 26.9 1.5 28 74-102 62-89 (104)
3 2k19_A Putative piscicolin 126 24.9 50 0.0017 24.9 2.9 22 59-80 75-96 (98)
4 2fmm_E Protein EMSY; ENT domai 22.6 88 0.003 24.8 4.0 32 61-96 35-66 (133)
5 3o39_A Periplasmic protein rel 22.5 1.4E+02 0.0049 22.4 5.2 38 59-96 16-53 (108)
6 2zrr_A Mundticin KS immunity p 21.9 47 0.0016 25.8 2.3 22 59-80 95-116 (118)
7 3itf_A Periplasmic adaptor pro 17.5 1.4E+02 0.0047 23.8 4.2 46 56-101 41-86 (145)
8 1g2y_A Hepatocyte nuclear fact 13.4 61 0.0021 19.4 0.8 15 59-73 3-17 (32)
9 3oeo_A Spheroplast protein Y; 12.6 1.6E+02 0.0054 23.0 3.3 40 58-97 31-70 (138)
10 2xoa_A Ryanodine receptor 1; m 10.5 5.2E+02 0.018 24.8 6.8 96 131-245 442-554 (559)
No 1
>1uz3_A EMSY protein; chromatin regulator, chromatin regulators, royal family domain; 1.1A {Homo sapiens} SCOP: a.283.1.1 PDB: 1utu_A
Probab=29.68 E-value=58 Score=24.70 Aligned_cols=30 Identities=27% Similarity=0.354 Sum_probs=25.1
Q ss_pred CCHHHHHHHHHHHHhhccccCCCCHHHHHHHHHH
Q 024639 61 LTPAQEECLQRLQLRIDVAYDSSIPEHREALRAL 94 (265)
Q Consensus 61 L~~~Q~~~L~~L~~~~~~~~d~~n~~H~~~L~~L 94 (265)
||..|+..|..|++..+ .+|.+|...|..+
T Consensus 43 Lsweke~LLt~LR~~L~----IS~eeH~~elrr~ 72 (102)
T 1uz3_A 43 LTKEKKDLLGELSKVLS----ISTERHRAEVRRA 72 (102)
T ss_dssp CCHHHHHHHHHHHHHTT----CCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC----CCcHHHHHHHHHh
Confidence 89999999999987665 4688998888766
No 2
>3d0w_A YFLH protein; GRAM-positive bacterium, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Bacillus subtilis}
Probab=27.31 E-value=24 Score=26.95 Aligned_cols=28 Identities=25% Similarity=0.259 Sum_probs=22.0
Q ss_pred HhhccccCCCCHHHHHHHHHHHHHhCCCc
Q 024639 74 LRIDVAYDSSIPEHREALRALWNAAFPDE 102 (265)
Q Consensus 74 ~~~~~~~d~~n~~H~~~L~~Lw~~~~~~~ 102 (265)
....-.+||.|++ +++|++||+.+..++
T Consensus 62 dyLA~~vdP~N~E-erlLkELW~Va~eeE 89 (104)
T 3d0w_A 62 DYLAKHEEPQNGE-EMLLQELWSVADEDE 89 (104)
T ss_dssp HHHHTCCCCCSHH-HHHHHHHHHHCCHHH
T ss_pred HHHHHcCCCCCHH-HHHHHHHHHhCCHHH
Confidence 4456679999975 699999999976544
No 3
>2k19_A Putative piscicolin 126 immunity protein; PISI, bacteriocin, immune system, antimicrobial protein; NMR {Carnobacterium maltaromaticum}
Probab=24.95 E-value=50 Score=24.87 Aligned_cols=22 Identities=23% Similarity=0.306 Sum_probs=19.5
Q ss_pred CCCCHHHHHHHHHHHHhhcccc
Q 024639 59 FDLTPAQEECLQRLQLRIDVAY 80 (265)
Q Consensus 59 ~~L~~~Q~~~L~~L~~~~~~~~ 80 (265)
..||+.|++.|+.|++..++.|
T Consensus 75 i~Ls~~qs~~lK~Lr~Ls~IRY 96 (98)
T 2k19_A 75 VTLSDYQSKKLKELTSISNIRY 96 (98)
T ss_dssp CCCCHHHHHHHHHHHHHCSCCT
T ss_pred cccCHHHHHHHHHHHHHHhhhc
Confidence 4599999999999999988876
No 4
>2fmm_E Protein EMSY; ENT domain, chromo shadow domain, EMSY protein, heterochroma protein 1, transcription; 1.80A {Homo sapiens} SCOP: a.283.1.1
Probab=22.62 E-value=88 Score=24.80 Aligned_cols=32 Identities=28% Similarity=0.395 Sum_probs=26.0
Q ss_pred CCHHHHHHHHHHHHhhccccCCCCHHHHHHHHHHHH
Q 024639 61 LTPAQEECLQRLQLRIDVAYDSSIPEHREALRALWN 96 (265)
Q Consensus 61 L~~~Q~~~L~~L~~~~~~~~d~~n~~H~~~L~~Lw~ 96 (265)
||..|+..|..|++..++ ++.+|...|+.+-+
T Consensus 35 LSweke~LLt~LR~~L~I----S~eeH~~elrr~~s 66 (133)
T 2fmm_E 35 LTKEKKDLLGELSKVLSI----STERHRAEVRRAVN 66 (133)
T ss_dssp CCHHHHHHHHHHHHHTTC----CHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCC----CcHHHHHHHHHhhh
Confidence 899999999999876655 58899888877643
No 5
>3o39_A Periplasmic protein related to spheroblast format; alpha-helical, structural genomics, montreal-kingston bacter structural genomics initiative; HET: MSE; 2.60A {Escherichia coli}
Probab=22.47 E-value=1.4e+02 Score=22.45 Aligned_cols=38 Identities=18% Similarity=0.218 Sum_probs=28.1
Q ss_pred CCCCHHHHHHHHHHHHhhccccCCCCHHHHHHHHHHHH
Q 024639 59 FDLTPAQEECLQRLQLRIDVAYDSSIPEHREALRALWN 96 (265)
Q Consensus 59 ~~L~~~Q~~~L~~L~~~~~~~~d~~n~~H~~~L~~Lw~ 96 (265)
++||..|...++.|.+......+....+-.+.|..|-.
T Consensus 16 L~LTd~Qk~qir~L~~~~r~~~~~~~~~~r~~m~~Li~ 53 (108)
T 3o39_A 16 LNLTDAQKQQIREIMKGQRDQMKRPPLEERRAMHDIIA 53 (108)
T ss_dssp SCCCHHHHHHHHHHHHTTTTSCCCCCHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHhc
Confidence 78999999999999987777766655554555555433
No 6
>2zrr_A Mundticin KS immunity protein; antiparallel four-helix bundle, antimicrobial protein; 1.80A {Enterococcus mundtii}
Probab=21.89 E-value=47 Score=25.84 Aligned_cols=22 Identities=23% Similarity=0.315 Sum_probs=16.4
Q ss_pred CCCCHHHHHHHHHHHHhhcccc
Q 024639 59 FDLTPAQEECLQRLQLRIDVAY 80 (265)
Q Consensus 59 ~~L~~~Q~~~L~~L~~~~~~~~ 80 (265)
..||+.|++.|+.|++..++.|
T Consensus 95 I~LS~~qs~~LK~Lr~LSnIRY 116 (118)
T 2zrr_A 95 VSLNENQSKKLKELMSISNIRY 116 (118)
T ss_dssp CCCCHHHHHHHHHHHTTC----
T ss_pred cccCHHHHHHHHHHHHHHhhhc
Confidence 4599999999999999888765
No 7
>3itf_A Periplasmic adaptor protein CPXP; CPXR, CPXA, cpxrap, CPX-pathway, envelope stress, transduction; HET: MSE; 1.45A {Escherichia coli str} PDB: 3qzc_A
Probab=17.52 E-value=1.4e+02 Score=23.81 Aligned_cols=46 Identities=17% Similarity=0.070 Sum_probs=31.0
Q ss_pred CCCCCCCHHHHHHHHHHHHhhccccCCCCHHHHHHHHHHHHHhCCC
Q 024639 56 RPSFDLTPAQEECLQRLQLRIDVAYDSSIPEHREALRALWNAAFPD 101 (265)
Q Consensus 56 ~~~~~L~~~Q~~~L~~L~~~~~~~~d~~n~~H~~~L~~Lw~~~~~~ 101 (265)
...++||+.|...|+.|.+........-+.+..+.|..|...-..+
T Consensus 41 ~~~L~LTdeQkqqir~L~~~~r~~~~~~~~~~r~~l~~Li~ad~fD 86 (145)
T 3itf_A 41 FDGISLTEHQRQQMRDLMQQARHEQPPVNVSELETMHRLVTAENFD 86 (145)
T ss_dssp TTTCCCCHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHTCSSCC
T ss_pred cccCCCCHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHccCCCC
Confidence 3458899999999999987665555554555556666665443333
No 8
>1g2y_A Hepatocyte nuclear factor 1-alpha; dimerization domain, four-helix bundle, transcription factor, selenomethionine; 1.00A {Synthetic} SCOP: a.34.2.1 PDB: 1g39_A 1f93_E 1g2z_A 1jb6_A 2gyp_A
Probab=13.38 E-value=61 Score=19.38 Aligned_cols=15 Identities=33% Similarity=0.284 Sum_probs=12.0
Q ss_pred CCCCHHHHHHHHHHH
Q 024639 59 FDLTPAQEECLQRLQ 73 (265)
Q Consensus 59 ~~L~~~Q~~~L~~L~ 73 (265)
.+||++|++.|..|-
T Consensus 3 skLs~LQ~eLL~aLL 17 (32)
T 1g2y_A 3 SKLSQLQTEMLAALL 17 (32)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHH
Confidence 468899999988764
No 9
>3oeo_A Spheroplast protein Y; LTXXQ, extracytoplasmic stress response-related, signaling P; 2.70A {Escherichia coli}
Probab=12.61 E-value=1.6e+02 Score=22.99 Aligned_cols=40 Identities=18% Similarity=0.227 Sum_probs=28.5
Q ss_pred CCCCCHHHHHHHHHHHHhhccccCCCCHHHHHHHHHHHHH
Q 024639 58 SFDLTPAQEECLQRLQLRIDVAYDSSIPEHREALRALWNA 97 (265)
Q Consensus 58 ~~~L~~~Q~~~L~~L~~~~~~~~d~~n~~H~~~L~~Lw~~ 97 (265)
.++||+.|+..|+.|.+...........+-.+.|..|...
T Consensus 31 ~L~LT~eQ~~qir~i~~~~r~~~~~~~~~~r~~l~~Li~a 70 (138)
T 3oeo_A 31 DLNLTDAQKQQIREIMKGQRDQMKRPPLEERRAMHDIITS 70 (138)
T ss_dssp CSCCCTTHHHHHHHHHHHHSSSSCCCCTTHHHHHHHHHTC
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4889999999999998877666554444444566666444
No 10
>2xoa_A Ryanodine receptor 1; metal transport, calcium channel, ION channel, membrane PROT malignant hyperthermia, cardiac arrhythmia; 2.50A {Oryctolagus cuniculus}
Probab=10.48 E-value=5.2e+02 Score=24.83 Aligned_cols=96 Identities=19% Similarity=0.282 Sum_probs=43.2
Q ss_pred HhHHhhHHHHHhcc--------------H--HHHHHHHhhcCCCCCCCccHHHHHHHHHHHHHHHhhhccCCCccccccc
Q 024639 131 FISLENLLYLARNF--------------P--SFQDLLRKQEGDRSVWEYPFAVAGVNITFMLIQMLDLEAVKPRTMVGAT 194 (265)
Q Consensus 131 iLgL~~LlyF~~~~--------------~--~~~~il~~q~~~~~~~~yPFAvagINIT~~L~~~L~l~~~~~~~~~~~~ 194 (265)
+..|+.|++|+..- | .=|++++++ +|-.+|+++|+.-.. .. ....
T Consensus 442 ~~~L~dLi~F~~~~~~~~~~~~~q~~~~~~r~RQkLlrEq----------------~il~ll~~il~~l~~--~~-~~~~ 502 (559)
T 2xoa_A 442 ILSLQDLIGYFEPPSEELQHEEKQSKLRSLRNRQSLFQEE----------------GMLSLVLNCIDRLNV--YT-TAAH 502 (559)
T ss_dssp HHHHHHHHHHTCCC---------CCHHHHHHHHHHHHHHT----------------THHHHHHHHHHHHTT--SC-C---
T ss_pred HHHHHHHHHHhcCccccccchhccccccccHHHHHHHhhh----------------chHHHHHHHHHHhhc--cC-chhh
Confidence 34678899998532 2 245566664 456667777752111 11 1133
Q ss_pred cccccccch-hhHHHHHHHHHHHHHHHHhhCCCCcccHHHHHHHHHHHHHHh
Q 024639 195 FLKFLSENE-SAFDLLYCITFKLMDHQWLAMRASYMDFNTVMKSTRRQLERE 245 (265)
Q Consensus 195 f~~ll~~~~-~aF~eLy~~~F~~f~~~W~~~~at~mdF~~Vl~~~r~qL~r~ 245 (265)
+..+..++. ..+.++...+++++..+=+..+.+-..|.+-+..+-+||.+.
T Consensus 503 ~~~~~~~~~~~~~~~i~~~~Y~LL~~~i~~N~~N~~y~~~~l~~l~~~l~~~ 554 (559)
T 2xoa_A 503 FAEYAGEEAAESWKEIVNLLYELLASLIRGNRANCALFSTNLDWVVSKLDRL 554 (559)
T ss_dssp ---CCCSTGGGTHHHHHHHHHHHHHHHHCC----------------------
T ss_pred HHHhhcchhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhccc
Confidence 333333333 568889999999999999998888888888898888888753
Done!