Query 024639
Match_columns 265
No_of_seqs 166 out of 399
Neff 6.3
Searched_HMMs 13730
Date Mon Mar 25 11:49:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024639.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/024639hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1uz3a1 a.283.1.1 (A:13-102) E 22.5 47 0.0034 22.9 4.0 30 61-94 31-60 (90)
2 d2ifta1 c.66.1.46 (A:11-193) P 21.6 8 0.00058 29.6 -0.4 29 126-154 51-85 (183)
3 d1ya0a1 a.118.8.1 (A:1-497) SM 18.1 1.4E+02 0.01 25.2 7.5 71 163-249 217-287 (497)
4 d2c1wa1 d.294.1.1 (A:6-289) En 14.1 89 0.0065 25.7 4.6 58 81-143 124-181 (284)
5 d1w36b1 c.37.1.19 (B:1-485) Ex 9.8 40 0.0029 28.0 1.0 42 80-123 386-428 (485)
6 d1myta_ a.1.1.2 (A:) Myoglobin 9.0 2.8E+02 0.02 19.1 5.6 14 106-119 133-146 (146)
7 d1olma1 a.5.3.1 (A:1-75) Super 7.7 1.2E+02 0.0086 19.1 2.5 20 59-78 6-25 (75)
8 d1dxea_ c.1.12.5 (A:) 2-dehydr 7.3 2E+02 0.015 22.5 4.4 54 72-125 177-236 (253)
9 d2a61a1 a.4.5.28 (A:5-143) Tra 7.1 2.7E+02 0.019 18.8 4.6 77 169-245 58-138 (139)
10 d1i39a_ c.55.3.1 (A:) Class II 6.9 1.2E+02 0.0087 22.6 2.6 41 33-73 8-53 (200)
No 1
>d1uz3a1 a.283.1.1 (A:13-102) Emsy {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.47 E-value=47 Score=22.89 Aligned_cols=30 Identities=27% Similarity=0.354 Sum_probs=24.7
Q ss_pred CCHHHHHHHHHHHHhhccccCCCCHHHHHHHHHH
Q 024639 61 LTPAQEECLQRLQLRIDVAYDSSIPEHREALRAL 94 (265)
Q Consensus 61 L~~~Q~~~L~~L~~~~~~~~d~~n~~H~~~L~~L 94 (265)
|+..|+..|..|++.. ..+|.+|...|..+
T Consensus 31 lsweke~lLt~LR~~L----~IS~eeHr~elrr~ 60 (90)
T d1uz3a1 31 LTKEKKDLLGELSKVL----SISTERHRAEVRRA 60 (90)
T ss_dssp CCHHHHHHHHHHHHHT----TCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh----CCCcHHHHHHHHHh
Confidence 8999999999988665 45688998888766
No 2
>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}
Probab=21.60 E-value=8 Score=29.62 Aligned_cols=29 Identities=24% Similarity=0.407 Sum_probs=22.3
Q ss_pred CCchhHhHHhhH------HHHHhccHHHHHHHHhh
Q 024639 126 FRGGGFISLENL------LYLARNFPSFQDLLRKQ 154 (265)
Q Consensus 126 FRg~GiLgL~~L------lyF~~~~~~~~~il~~q 154 (265)
|-|+|.+||++| ++|+++.+...+.+.++
T Consensus 51 FaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik~N 85 (183)
T d2ifta1 51 FAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKN 85 (183)
T ss_dssp TCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHH
T ss_pred ccCccceeeeeeeecceeeEEeecccchhhhHhhH
Confidence 679999999999 45888888555666554
No 3
>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.14 E-value=1.4e+02 Score=25.16 Aligned_cols=71 Identities=17% Similarity=0.199 Sum_probs=40.7
Q ss_pred ccHHHHHHHHHHHHHHHhhhccCCCccccccccccccccchhhHHHHHHHHHHHHHHHHhhCCCCcccHHHHHHHHHHHH
Q 024639 163 YPFAVAGVNITFMLIQMLDLEAVKPRTMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAMRASYMDFNTVMKSTRRQL 242 (265)
Q Consensus 163 yPFAvagINIT~~L~~~L~l~~~~~~~~~~~~f~~ll~~~~~aF~eLy~~~F~~f~~~W~~~~at~mdF~~Vl~~~r~qL 242 (265)
=||+.|--|+..++-...+.....+.......| ...|-.+++..|. +.+..+|..+.+.+.+++
T Consensus 217 ~~~~~a~~nL~~~~~~~~~~~~~~~~~~~~~~~-------~~~f~~~~~~l~~---------~~~~~~~~~~~~~~~~~l 280 (497)
T d1ya0a1 217 FPFPAASTNLQKALSKALESRDEVKTKWGVSDF-------IKAFIKFHGHVYL---------SKSLEKLSPLREKLEEQF 280 (497)
T ss_dssp BCCHHHHHHHHHHHHHHTTSCCCCCSSCCHHHH-------HHHHHHHHHHHHH---------TCCGGGHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhhhhhhhccccccchH-------HHHHHHHHHHHHh---------CCchhhHHHHHHHHHHHH
Confidence 377778888877766555432211111110111 1234444444332 567788999999999999
Q ss_pred HHhhccc
Q 024639 243 ERELLLE 249 (265)
Q Consensus 243 ~r~L~~~ 249 (265)
...++.+
T Consensus 281 ~~~l~~~ 287 (497)
T d1ya0a1 281 KELLFQK 287 (497)
T ss_dssp HHHHHTT
T ss_pred HHHHhcC
Confidence 8888654
No 4
>d2c1wa1 d.294.1.1 (A:6-289) EndoU {African clawed frog (Xenopus laevis) [TaxId: 8355]}
Probab=14.10 E-value=89 Score=25.69 Aligned_cols=58 Identities=14% Similarity=0.245 Sum_probs=40.3
Q ss_pred CCCCHHHHHHHHHHHHHhCCCcccchhhhhHHhhccCCCCCCCCCCCchhHhHHhhHHHHHhc
Q 024639 81 DSSIPEHREALRALWNAAFPDEELRDLISEQWKEMGWQGKDPSTDFRGGGFISLENLLYLARN 143 (265)
Q Consensus 81 d~~n~~H~~~L~~Lw~~~~~~~~~~~~~s~~Wk~lGFQg~dP~TDFRg~GiLgL~~LlyF~~~ 143 (265)
..+..+..+.|+.||=..+....-....+.-++.+ |-|+- -+|.++.|+.|-++|...
T Consensus 124 ~~s~~~Fk~~L~~lWF~~Y~R~~g~~~dSSgFEHV-FvGE~----k~g~~V~G~HNWi~fy~~ 181 (284)
T d2c1wa1 124 KPTRNDFKVQLYNIWFQLYSRAPGSRPDSCGFEHV-FVGES----KRGQEMMGLHNWVQFYLQ 181 (284)
T ss_dssp CSSHHHHHHHHHHHHHSCBCC--CCCCCBCHHHHH-TTSCS----SSSCSCCCCCCHHHHHHH
T ss_pred CCCHHHHHHHHHHhcccCcccCCCCCCCCCCcceE-eeccc----cCCCcccceehHHHHHHH
Confidence 34557789999999999886532222345677777 77751 256789999999888643
No 5
>d1w36b1 c.37.1.19 (B:1-485) Exodeoxyribonuclease V beta chain (RecB), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=9.80 E-value=40 Score=27.98 Aligned_cols=42 Identities=21% Similarity=0.544 Sum_probs=28.8
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCcccchhhhhHHhhc-cCCCCCCC
Q 024639 80 YDSSIPEHREALRALWNAAFPDEELRDLISEQWKEM-GWQGKDPS 123 (265)
Q Consensus 80 ~d~~n~~H~~~L~~Lw~~~~~~~~~~~~~s~~Wk~l-GFQg~dP~ 123 (265)
|=.+|+.+.++|+.||... +...+ -.+|+.|..| ||.|.||.
T Consensus 386 fQDts~~Q~~ll~~L~~~~-~~~~l-~~VGD~kQSIY~FRgad~~ 428 (485)
T d1w36b1 386 FQDTDPQQYRIFRRIWHHQ-PETAL-LLIGDPKQAIYAFRGADIF 428 (485)
T ss_dssp GGGCCHHHHHHHHHHHTTC-TTCEE-EEEECGGGCCCGGGTCCHH
T ss_pred cccCCHHHHHHHHHHHhCC-CCCeE-EEEecCcchhccccCCCHH
Confidence 3346888899999998642 11112 2368899977 89998874
No 6
>d1myta_ a.1.1.2 (A:) Myoglobin {Yellowfin tuna (Thunnus albacares) [TaxId: 8236]}
Probab=8.98 E-value=2.8e+02 Score=19.12 Aligned_cols=14 Identities=29% Similarity=0.717 Sum_probs=10.4
Q ss_pred hhhhhHHhhccCCC
Q 024639 106 DLISEQWKEMGWQG 119 (265)
Q Consensus 106 ~~~s~~Wk~lGFQg 119 (265)
....+.+++.||+|
T Consensus 133 ~~l~~~y~e~g~~~ 146 (146)
T d1myta_ 133 ADLEANYKELGFSG 146 (146)
T ss_dssp HHHHHHHHHHTCC-
T ss_pred HHHHHHHHHcCCCC
Confidence 44578899999986
No 7
>d1olma1 a.5.3.1 (A:1-75) Supernatant protein factor (SPF), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.67 E-value=1.2e+02 Score=19.12 Aligned_cols=20 Identities=30% Similarity=0.478 Sum_probs=16.1
Q ss_pred CCCCHHHHHHHHHHHHhhcc
Q 024639 59 FDLTPAQEECLQRLQLRIDV 78 (265)
Q Consensus 59 ~~L~~~Q~~~L~~L~~~~~~ 78 (265)
-+||+.|+..|..+++...-
T Consensus 6 gelt~~q~~~l~elr~~l~~ 25 (75)
T d1olma1 6 GDLSPRQKEALAKFRENVQD 25 (75)
T ss_dssp TBCCHHHHHHHHHHHHHHGG
T ss_pred ccCCHHHHHHHHHHHHHHHh
Confidence 35899999999999877653
No 8
>d1dxea_ c.1.12.5 (A:) 2-dehydro-3-deoxy-galactarate aldolase {Escherichia coli [TaxId: 562]}
Probab=7.30 E-value=2e+02 Score=22.49 Aligned_cols=54 Identities=17% Similarity=0.177 Sum_probs=37.2
Q ss_pred HHHhhccccCCCCHHHHHHHHHHHHHhCCCc-cc-----chhhhhHHhhccCCCCCCCCC
Q 024639 72 LQLRIDVAYDSSIPEHREALRALWNAAFPDE-EL-----RDLISEQWKEMGWQGKDPSTD 125 (265)
Q Consensus 72 L~~~~~~~~d~~n~~H~~~L~~Lw~~~~~~~-~~-----~~~~s~~Wk~lGFQg~dP~TD 125 (265)
|..-++.+-+.++|++++++.++-+.+.... +. .....++|.+.||+=-.-.+|
T Consensus 177 Ls~slG~~g~~~~p~v~~ai~~v~~~~~~~gk~~g~~~~~~~~~~~~~~~G~~~i~~g~D 236 (253)
T d1dxea_ 177 LAAALGHLGNASHPDVQKAIQHIFNRASAHGKPSGILAPVEADARRYLEWGATFVAVGSD 236 (253)
T ss_dssp HHHHTTCTTCTTSHHHHHHHHHHHHHHHHTTCCEEEECCSHHHHHHHHHTTCCEEEEEEH
T ss_pred HHhhccCCCCCCChhHHHHHHHHHHHHHHcCCCeEEecCCHHHHHHHHHcCCCEEEehHH
Confidence 3346677788999999999999988875322 11 123457999999986434444
No 9
>d2a61a1 a.4.5.28 (A:5-143) Transcriptional regulator TM0710 {Thermotoga maritima [TaxId: 2336]}
Probab=7.14 E-value=2.7e+02 Score=18.82 Aligned_cols=77 Identities=10% Similarity=0.055 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHhhhccCCC---ccccccccccccccchhhHHHHHHHHHHHHHHHHhhCC-CCcccHHHHHHHHHHHHHH
Q 024639 169 GVNITFMLIQMLDLEAVKP---RTMVGATFLKFLSENESAFDLLYCITFKLMDHQWLAMR-ASYMDFNTVMKSTRRQLER 244 (265)
Q Consensus 169 gINIT~~L~~~L~l~~~~~---~~~~~~~f~~ll~~~~~aF~eLy~~~F~~f~~~W~~~~-at~mdF~~Vl~~~r~qL~r 244 (265)
.=+||.++-.+.+.+-... ....+...+.+-......+.++....-......+.... .....|..++..+...+++
T Consensus 58 ~~tvs~~l~~L~~~gli~r~~~~~D~R~~~i~LT~~G~~~~~~~~~~~~~~~~~~~~~l~~~e~~~l~~~l~~l~~~le~ 137 (139)
T d2a61a1 58 KSTVTGLVKRLEADGYLTRTPDPADRRAYFLVITRKGEEVIEKVIERRENFIEKITSDLGKEKSSKILDYLKELKGVMER 137 (139)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHhcCeeeeeeccCCCCeEEEEECHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhc
Confidence 3478888888877653211 11112333333322334566666666666666666644 5677888899998888876
Q ss_pred h
Q 024639 245 E 245 (265)
Q Consensus 245 ~ 245 (265)
-
T Consensus 138 ~ 138 (139)
T d2a61a1 138 N 138 (139)
T ss_dssp H
T ss_pred c
Confidence 4
No 10
>d1i39a_ c.55.3.1 (A:) Class II ribonuclease H (RNase HII) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=6.94 E-value=1.2e+02 Score=22.62 Aligned_cols=41 Identities=22% Similarity=0.170 Sum_probs=29.4
Q ss_pred ccchhhhccccccccccc-----cCCCCCCCCCCCHHHHHHHHHHH
Q 024639 33 AGSAAWLGRGLSCVCAQR-----RESDPRPSFDLTPAQEECLQRLQ 73 (265)
Q Consensus 33 ~~~~~~~~~~~~c~~~~~-----~~~~~~~~~~L~~~Q~~~L~~L~ 73 (265)
+|.|+|+|-...|.|.-. +..+...+-.||+.|++.|....
T Consensus 8 aGrG~~~GPvvvaav~~~~~~~~~~~gv~DSK~Ls~~kr~~l~~~I 53 (200)
T d1i39a_ 8 AGKGCVIGPLVVAGVACSDEDRLRKLGVKDSKKLSQGRREELAEEI 53 (200)
T ss_dssp ECTTCSBSCEEEEEEEESCHHHHHHTTCTTCTTCCHHHHHHHHHHH
T ss_pred cCCCCcccceEEEEEEECchhccccccchhhhcCCHHHHHHHHHHH
Confidence 589999997776655432 23456778899999999886644
Done!