Query 024640
Match_columns 265
No_of_seqs 264 out of 1688
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 11:50:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024640.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024640hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1egw_A MADS box transcription 100.0 1.3E-38 4.3E-43 235.5 1.4 73 2-75 1-73 (77)
2 3p57_A Myocyte-specific enhanc 100.0 6.9E-38 2.4E-42 237.2 1.6 74 2-76 1-74 (90)
3 1mnm_A Protein (MCM1 transcrip 100.0 5.2E-37 1.8E-41 236.2 -2.0 73 1-74 16-88 (100)
4 1hbx_A SRF, serum response fac 100.0 4E-36 1.4E-40 228.4 -1.6 70 1-71 10-79 (92)
5 1k6o_B SRF, serum response fac 100.0 6.4E-36 2.2E-40 231.5 -0.8 77 1-78 9-90 (103)
6 2w6a_A ARF GTPase-activating p 83.8 5 0.00017 27.3 6.8 53 117-169 8-62 (63)
7 2jee_A YIIU; FTSZ, septum, coi 78.8 7.8 0.00027 28.1 6.8 46 119-169 3-48 (81)
8 1dip_A Delta-sleep-inducing pe 71.8 5.3 0.00018 28.4 4.2 28 143-170 17-44 (78)
9 1j1d_C Troponin I, TNI; THIN f 69.2 30 0.001 27.2 8.7 31 115-145 54-84 (133)
10 3hnw_A Uncharacterized protein 68.5 41 0.0014 26.4 9.5 68 89-170 65-132 (138)
11 3nmd_A CGMP dependent protein 65.9 20 0.00069 25.3 6.3 49 115-170 14-62 (72)
12 1go4_E MAD1 (mitotic arrest de 63.4 38 0.0013 25.4 7.8 71 90-170 10-90 (100)
13 2v71_A Nuclear distribution pr 62.9 36 0.0012 28.4 8.4 21 150-170 90-110 (189)
14 2l16_A SEC-independent protein 60.1 0.67 2.3E-05 33.5 -2.4 30 43-75 16-45 (78)
15 2yy0_A C-MYC-binding protein; 58.2 14 0.00047 24.5 4.1 26 145-170 23-48 (53)
16 3s9g_A Protein hexim1; cyclin 55.9 21 0.0007 26.8 5.1 55 88-170 33-87 (104)
17 1j1e_C Troponin I, TNI; THIN f 54.0 50 0.0017 27.3 7.7 46 115-160 54-105 (180)
18 2dgc_A Protein (GCN4); basic d 53.7 20 0.00067 24.5 4.4 32 135-170 21-52 (63)
19 2dfs_A Myosin-5A; myosin-V, in 52.4 53 0.0018 34.4 9.4 80 89-170 957-1038(1080)
20 2oqq_A Transcription factor HY 50.6 32 0.0011 21.6 4.6 26 145-170 14-39 (42)
21 1fxk_A Prefoldin; archaeal pro 50.5 69 0.0024 23.2 7.9 26 145-170 76-101 (107)
22 2xus_A Breast cancer metastasi 48.5 43 0.0015 21.8 5.2 34 121-161 12-45 (49)
23 1a93_B MAX protein, coiled coi 48.3 22 0.00077 21.4 3.4 26 141-166 7-32 (34)
24 1dh3_A Transcription factor CR 45.7 33 0.0011 22.6 4.4 30 137-170 15-44 (55)
25 3nrf_A APAG protein; structura 42.6 4.3 0.00015 30.9 -0.5 44 11-59 21-64 (106)
26 1ytz_T Troponin T; muscle, THI 42.0 32 0.0011 26.0 4.4 31 115-145 38-68 (107)
27 1deq_A Fibrinogen (alpha chain 40.8 1.9E+02 0.0065 26.6 10.1 9 63-71 54-62 (390)
28 1ci6_A Transcription factor AT 39.6 45 0.0015 22.5 4.5 24 147-170 22-45 (63)
29 3m9b_A Proteasome-associated A 39.4 51 0.0017 28.7 5.8 44 122-170 54-97 (251)
30 3hnw_A Uncharacterized protein 38.3 1E+02 0.0034 24.1 7.0 48 123-170 76-125 (138)
31 1m2d_A [2Fe-2S] ferredoxin; th 38.1 18 0.00063 26.8 2.5 34 38-72 58-91 (110)
32 2wt7_A Proto-oncogene protein 38.0 48 0.0017 22.3 4.4 30 137-170 16-45 (63)
33 2zqm_A Prefoldin beta subunit 37.7 78 0.0027 23.2 6.1 25 146-170 82-106 (117)
34 3oja_B Anopheles plasmodium-re 37.2 2.6E+02 0.009 26.1 12.1 26 145-170 548-573 (597)
35 1t2k_D Cyclic-AMP-dependent tr 36.7 57 0.0019 21.6 4.6 30 137-170 15-44 (61)
36 4gfh_A DNA topoisomerase 2; to 36.6 2.4E+02 0.0083 29.8 11.5 43 26-73 958-1000(1177)
37 3gp4_A Transcriptional regulat 35.3 1.5E+02 0.0051 22.9 7.6 52 118-170 59-110 (142)
38 1jnm_A Proto-oncogene C-JUN; B 35.1 62 0.0021 21.5 4.6 31 136-170 14-44 (62)
39 1gd2_E Transcription factor PA 35.1 50 0.0017 23.0 4.1 35 136-170 21-58 (70)
40 2aze_A Transcription factor DP 34.9 1.1E+02 0.0037 24.7 6.7 49 120-170 3-51 (155)
41 3twe_A Alpha4H; unknown functi 31.6 64 0.0022 17.8 3.3 21 89-109 5-25 (27)
42 1p9i_A Cortexillin I/GCN4 hybr 31.3 34 0.0012 19.5 2.2 14 157-170 8-21 (31)
43 2rpa_A Katanin P60 ATPase-cont 30.7 6 0.00021 28.4 -1.3 34 29-74 16-49 (78)
44 3hvz_A Uncharacterized protein 30.6 25 0.00087 24.8 2.0 26 44-69 7-32 (78)
45 2l5g_B Putative uncharacterize 30.6 77 0.0026 19.9 4.0 17 147-163 22-38 (42)
46 3na7_A HP0958; flagellar bioge 29.6 2.2E+02 0.0074 24.1 8.4 39 120-158 88-128 (256)
47 2w6b_A RHO guanine nucleotide 29.3 82 0.0028 20.9 4.2 27 144-170 6-32 (56)
48 1g6u_A Domain swapped dimer; d 29.0 1.1E+02 0.0036 19.0 5.7 17 117-133 15-31 (48)
49 1gk7_A Vimentin; intermediate 28.3 1.1E+02 0.0036 18.8 4.4 27 144-170 9-35 (39)
50 2oxj_A Hybrid alpha/beta pepti 27.7 58 0.002 19.5 2.9 21 150-170 3-23 (34)
51 3a7p_A Autophagy protein 16; c 27.5 2.4E+02 0.0081 22.6 9.8 22 149-170 111-132 (152)
52 2jee_A YIIU; FTSZ, septum, coi 27.0 96 0.0033 22.2 4.6 29 142-170 14-42 (81)
53 3q4f_C DNA repair protein XRCC 25.6 68 0.0023 26.6 4.0 25 146-170 159-183 (186)
54 3na7_A HP0958; flagellar bioge 25.5 3E+02 0.01 23.2 8.8 27 85-111 90-116 (256)
55 1j1d_B Troponin T, TNT; THIN f 25.3 1.5E+02 0.005 22.3 5.6 31 115-145 38-68 (106)
56 3gpv_A Transcriptional regulat 25.0 2.4E+02 0.0081 21.8 7.6 52 118-170 73-124 (148)
57 1q08_A Zn(II)-responsive regul 24.4 1.9E+02 0.0063 20.3 7.2 52 118-170 16-68 (99)
58 1kaf_A Transcription regulator 24.1 18 0.0006 27.5 0.2 53 6-74 23-76 (108)
59 3v86_A De novo design helix; c 23.7 96 0.0033 17.1 3.1 22 146-167 5-26 (27)
60 2l5g_A GPS2 protein, G protein 23.1 1.1E+02 0.0037 18.7 3.5 22 147-168 14-35 (38)
61 2lw9_A Unconventionnal myosin- 21.7 82 0.0028 20.4 3.0 37 92-129 6-42 (51)
62 2ky6_A Mediator of RNA polymer 21.5 64 0.0022 26.3 3.1 38 36-73 116-160 (166)
63 2v66_B Nuclear distribution pr 21.4 2.7E+02 0.0091 21.0 8.7 29 142-170 71-99 (111)
64 3vem_A Helicase protein MOM1; 20.7 2.8E+02 0.0097 21.1 9.9 69 89-170 36-106 (115)
65 3m48_A General control protein 20.4 81 0.0028 18.7 2.5 20 151-170 3-22 (33)
No 1
>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*
Probab=100.00 E-value=1.3e-38 Score=235.45 Aligned_cols=73 Identities=51% Similarity=0.864 Sum_probs=69.4
Q ss_pred CcccceeeeeccCCCcceehhhhccchhhhhhhhhcccCcceeeeeeccCCCcccccCchhHHHHHHHHhhcCC
Q 024640 2 GRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSPSIMKTLERYHRCSF 75 (265)
Q Consensus 2 gR~Kv~ikrIen~~~RqvTfsKRr~GL~KKA~ELSvLCdaeValIiFS~~Gkl~ef~S~~sm~~iLeRY~~~~~ 75 (265)
||+||+|++|||+++|||||+|||+||||||+||||||||||||||||++||+|+|+|+ +|.+||+||++++.
T Consensus 1 GR~Ki~ik~I~n~~~R~vTfsKRr~GL~KKA~ELsvLCdaeV~livfs~~gk~~~~~s~-~~~~il~ry~~~~~ 73 (77)
T 1egw_A 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAST-DMDKVLLKYTEYNE 73 (77)
T ss_dssp CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEESS-CHHHHHHHHHHC--
T ss_pred CCceeeeEEecCchHHHHHHHHhHHHHHHHHHHHhcccCCeEEEEEECCCCCEeeCCCC-CHHHHHHHHHhccC
Confidence 89999999999999999999999999999999999999999999999999999999975 79999999998764
No 2
>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A
Probab=100.00 E-value=6.9e-38 Score=237.18 Aligned_cols=74 Identities=50% Similarity=0.845 Sum_probs=71.2
Q ss_pred CcccceeeeeccCCCcceehhhhccchhhhhhhhhcccCcceeeeeeccCCCcccccCchhHHHHHHHHhhcCCC
Q 024640 2 GRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSPSIMKTLERYHRCSFG 76 (265)
Q Consensus 2 gR~Kv~ikrIen~~~RqvTfsKRr~GL~KKA~ELSvLCdaeValIiFS~~Gkl~ef~S~~sm~~iLeRY~~~~~~ 76 (265)
||+||+|++|||+++|||||+|||+||||||+|||||||||||||||||+||+|+|+|+ +|.+||+||++++..
T Consensus 1 GR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valiifs~~gk~~~f~s~-~~~~il~rY~~~~~~ 74 (90)
T 3p57_A 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAST-DMDKVLLKYTEYNEP 74 (90)
T ss_dssp CCSCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEESS-CHHHHHHHHHHCCSC
T ss_pred CCCcceeEEecCchHHHHHHHHhhhhHHHHHHHHHhccCCceEEEEECCCCCEEEeCCC-CHHHHHHHHHhcCcc
Confidence 89999999999999999999999999999999999999999999999999999999984 899999999998654
No 3
>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1
Probab=100.00 E-value=5.2e-37 Score=236.21 Aligned_cols=73 Identities=38% Similarity=0.642 Sum_probs=69.9
Q ss_pred CCcccceeeeeccCCCcceehhhhccchhhhhhhhhcccCcceeeeeeccCCCcccccCchhHHHHHHHHhhcC
Q 024640 1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSPSIMKTLERYHRCS 74 (265)
Q Consensus 1 MgR~Kv~ikrIen~~~RqvTfsKRr~GL~KKA~ELSvLCdaeValIiFS~~Gkl~ef~S~~sm~~iLeRY~~~~ 74 (265)
|||+||+|++|||+++|||||+|||+||||||+||||||||||||||||++||+|+|+|+ +|..||+||....
T Consensus 16 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~sp-s~~~il~r~~G~~ 88 (100)
T 1mnm_A 16 KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTP-KFEPIVTQQEGRN 88 (100)
T ss_dssp CCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEECT-TTTHHHHSHHHHH
T ss_pred CCccceeeEEecCcchhhhhhhHhhhhHHHHHHHHHHhcCCcEEEEEecCCCCcceecCC-CHHHHHHHhhCCc
Confidence 899999999999999999999999999999999999999999999999999999999986 7999999997653
No 4
>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A*
Probab=100.00 E-value=4e-36 Score=228.37 Aligned_cols=70 Identities=36% Similarity=0.660 Sum_probs=67.4
Q ss_pred CCcccceeeeeccCCCcceehhhhccchhhhhhhhhcccCcceeeeeeccCCCcccccCchhHHHHHHHHh
Q 024640 1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSPSIMKTLERYH 71 (265)
Q Consensus 1 MgR~Kv~ikrIen~~~RqvTfsKRr~GL~KKA~ELSvLCdaeValIiFS~~Gkl~ef~S~~sm~~iLeRY~ 71 (265)
|||+||+|++|||+++|||||+|||+||||||+||||||||||||||||++|++|+|+|+ +|..+|++|.
T Consensus 10 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~V~livfs~~gk~~~f~s~-~~~~~i~~~~ 79 (92)
T 1hbx_A 10 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATR-KLQPMITSET 79 (92)
T ss_dssp CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTSCEEEEECG-GGGGGTSSHH
T ss_pred CCcceEEEEEecChhHHHHHHHHhhhhHHHHHHHHHhhcCCceEEEEECCCCCEEEecCC-CHHHHHhhhc
Confidence 999999999999999999999999999999999999999999999999999999999975 8999998774
No 5
>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1
Probab=100.00 E-value=6.4e-36 Score=231.51 Aligned_cols=77 Identities=32% Similarity=0.619 Sum_probs=70.9
Q ss_pred CCcccceeeeeccCCCcceehhhhccchhhhhhhhhcccCcceeeeeeccCCCcccccCchhHHHHHHH-----HhhcCC
Q 024640 1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSPSIMKTLER-----YHRCSF 75 (265)
Q Consensus 1 MgR~Kv~ikrIen~~~RqvTfsKRr~GL~KKA~ELSvLCdaeValIiFS~~Gkl~ef~S~~sm~~iLeR-----Y~~~~~ 75 (265)
|||+||+|++|||+++|||||+|||+||||||+||||||||||||||||++|++|+|+|+ +|..+|++ |.+++.
T Consensus 9 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~s~-~~~~vi~~~~Gk~l~~~c~ 87 (103)
T 1k6o_B 9 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATR-KLQPMITSETGKALIQTCL 87 (103)
T ss_dssp CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSCEEEEECG-GGGGGTSSHHHHHHHHHTT
T ss_pred CCcceeEEEEecCchHHHHhHhHhhHhHHHHHHHHHhhhCCceEEEEEeCCCCeeeecCc-cHHHHHHhhhhhHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999975 89999997 666665
Q ss_pred Ccc
Q 024640 76 GAH 78 (265)
Q Consensus 76 ~~~ 78 (265)
...
T Consensus 88 ~~~ 90 (103)
T 1k6o_B 88 NSP 90 (103)
T ss_dssp CC-
T ss_pred cCC
Confidence 443
No 6
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=83.84 E-value=5 Score=27.30 Aligned_cols=53 Identities=26% Similarity=0.328 Sum_probs=36.8
Q ss_pred CCCCHHHHHHHHHHHHhchhhhhh--hhhhhHHHHHHHHHHHHHHHHHHhHHHHH
Q 024640 117 DPLSTKELEQLEHQLETSLKHVRS--TKTQCMVDQLSDLQKREQVLLELNKGLRK 169 (265)
Q Consensus 117 ~~Ls~~EL~qLE~qLe~sL~~IRs--rK~qlm~~qi~~LqkKe~~L~eeN~~L~~ 169 (265)
++.++.|-.++.+.|-.+=.+|.. +-+.-+.+++.-||++.+.|+.+|..||.
T Consensus 8 gpit~qeylevK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr~ 62 (63)
T 2w6a_A 8 GAVTLQEYLELKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLRQ 62 (63)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CcchHHHHHHHHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhcc
Confidence 345566666666655555444431 23445788999999999999999999985
No 7
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=78.76 E-value=7.8 Score=28.07 Aligned_cols=46 Identities=13% Similarity=0.324 Sum_probs=34.1
Q ss_pred CCHHHHHHHHHHHHhchhhhhhhhhhhHHHHHHHHHHHHHHHHHHhHHHHH
Q 024640 119 LSTKELEQLEHQLETSLKHVRSTKTQCMVDQLSDLQKREQVLLELNKGLRK 169 (265)
Q Consensus 119 Ls~~EL~qLE~qLe~sL~~IRsrK~qlm~~qi~~LqkKe~~L~eeN~~L~~ 169 (265)
+|++=|.+||..++.++..|- ++.-+|++|+.|-..|.++|..++.
T Consensus 3 MS~ElleqLE~KIq~avdtI~-----lLqmEieELKekN~~L~~e~~e~~~ 48 (81)
T 2jee_A 3 MSLEVFEKLEAKVQQAIDTIT-----LLQMEIEELKEKNNSLSQEVQNAQH 48 (81)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 678889999998888888765 5566677777777776666666444
No 8
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=71.82 E-value=5.3 Score=28.40 Aligned_cols=28 Identities=18% Similarity=0.257 Sum_probs=24.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhHHHHHh
Q 024640 143 TQCMVDQLSDLQKREQVLLELNKGLRKK 170 (265)
Q Consensus 143 ~qlm~~qi~~LqkKe~~L~eeN~~L~~k 170 (265)
-..+.++|.+|..|...|+.||..|+.-
T Consensus 17 VevLKe~I~EL~e~~~qLE~EN~~Lk~~ 44 (78)
T 1dip_A 17 VEILKEQIRELVEKNSQLERENTLLKTL 44 (78)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4577899999999999999999999886
No 9
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=69.18 E-value=30 Score=27.25 Aligned_cols=31 Identities=26% Similarity=0.384 Sum_probs=27.2
Q ss_pred CCCCCCHHHHHHHHHHHHhchhhhhhhhhhh
Q 024640 115 DLDPLSTKELEQLEHQLETSLKHVRSTKTQC 145 (265)
Q Consensus 115 dL~~Ls~~EL~qLE~qLe~sL~~IRsrK~ql 145 (265)
++++||.++|+.+=+.|...+..+-+-|..+
T Consensus 54 ~id~ls~~~L~e~~keLh~~I~~LEeEKYDl 84 (133)
T 1j1d_C 54 ELAGLGFAELQDLARQLHARVDKVDEERYDI 84 (133)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 7999999999999999999888887777655
No 10
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=68.54 E-value=41 Score=26.45 Aligned_cols=68 Identities=16% Similarity=0.232 Sum_probs=39.5
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCHHHHHHHHHHHHhchhhhhhhhhhhHHHHHHHHHHHHHHHHHHhHHHH
Q 024640 89 STYQEYLRLKTAVELLQRSQRNLLGEDLDPLSTKELEQLEHQLETSLKHVRSTKTQCMVDQLSDLQKREQVLLELNKGLR 168 (265)
Q Consensus 89 ~~~~E~~kLk~kie~Lq~~~R~llGedL~~Ls~~EL~qLE~qLe~sL~~IRsrK~qlm~~qi~~LqkKe~~L~eeN~~L~ 168 (265)
+...|+.+++.+++.|+.....+ -+|+..|-..|...-.++ .-...++++|+++...|++++..|.
T Consensus 65 NiadEl~k~~~~~~~L~~~l~~~---------~kE~~~lK~el~~~~~k~-----e~~~~e~~~l~~~~~~l~~~~~~le 130 (138)
T 3hnw_A 65 NIADDYFKAKKMADSLSLDIENK---------DKEIYDLKHELIAAQIKA-----ESSAKEIKELKSEINKYQKNIVKLE 130 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888888888877654433 345555544443332222 2334555666666666666666665
Q ss_pred Hh
Q 024640 169 KK 170 (265)
Q Consensus 169 ~k 170 (265)
..
T Consensus 131 ~~ 132 (138)
T 3hnw_A 131 TE 132 (138)
T ss_dssp HH
T ss_pred HH
Confidence 55
No 11
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=65.86 E-value=20 Score=25.29 Aligned_cols=49 Identities=16% Similarity=0.265 Sum_probs=31.8
Q ss_pred CCCCCCHHHHHHHHHHHHhchhhhhhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHh
Q 024640 115 DLDPLSTKELEQLEHQLETSLKHVRSTKTQCMVDQLSDLQKREQVLLELNKGLRKK 170 (265)
Q Consensus 115 dL~~Ls~~EL~qLE~qLe~sL~~IRsrK~qlm~~qi~~LqkKe~~L~eeN~~L~~k 170 (265)
.+++++. +.+|+..|......||.+. +.|.+|.+......++.+.|+.+
T Consensus 14 ~~~~mgt--i~eLq~~L~~K~eELr~kd-----~~I~eLEk~L~ekd~eI~~Lqse 62 (72)
T 3nmd_A 14 SIEGRGS--LRDLQYALQEKIEELRQRD-----ALIDELELELDQKDELIQMLQNE 62 (72)
T ss_dssp -----CH--HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCCc--HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455554 8888899999999998663 33566666666666677777776
No 12
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=63.39 E-value=38 Score=25.39 Aligned_cols=71 Identities=25% Similarity=0.191 Sum_probs=43.0
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCHHHHHHHHHHHHh-ch---------hhhhhhhhhhHHHHHHHHHHHHHH
Q 024640 90 TYQEYLRLKTAVELLQRSQRNLLGEDLDPLSTKELEQLEHQLET-SL---------KHVRSTKTQCMVDQLSDLQKREQV 159 (265)
Q Consensus 90 ~~~E~~kLk~kie~Lq~~~R~llGedL~~Ls~~EL~qLE~qLe~-sL---------~~IRsrK~qlm~~qi~~LqkKe~~ 159 (265)
...++.+|+.+++.|++....|. ++...||-+|+. .| +.++- .+.....-....++....
T Consensus 10 ~~e~~~~lr~ei~~Le~E~~rLr---------~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~-~~NPa~~a~~~~~~~~e~ 79 (100)
T 1go4_E 10 SREEADTLRLKVEELEGERSRLE---------EEKRMLEAQLERRALQGDYDQSRTKVLHM-SLNPTSVARQRLREDHSQ 79 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHSSCCSCCCTTTEEEEEE-SSCHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHhhccccCCccCeeeee-cCChHHHHHHHHHHHHHH
Confidence 45577777777777777655443 466667777766 11 12221 122233334455666777
Q ss_pred HHHHhHHHHHh
Q 024640 160 LLELNKGLRKK 170 (265)
Q Consensus 160 L~eeN~~L~~k 170 (265)
|++++..|+.+
T Consensus 80 Lq~E~erLr~~ 90 (100)
T 1go4_E 80 LQAECERLRGL 90 (100)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88889888888
No 13
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=62.85 E-value=36 Score=28.42 Aligned_cols=21 Identities=19% Similarity=0.143 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHh
Q 024640 150 LSDLQKREQVLLELNKGLRKK 170 (265)
Q Consensus 150 i~~LqkKe~~L~eeN~~L~~k 170 (265)
+..|++....|.+.+..|+.+
T Consensus 90 ~~~Lq~el~~l~~~~~~l~~~ 110 (189)
T 2v71_A 90 VSVLEDDLSQTRAIKEQLHKY 110 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555
No 14
>2l16_A SEC-independent protein translocase protein tatad; membrane protein, protein transport; NMR {Bacillus subtilis}
Probab=60.05 E-value=0.67 Score=33.48 Aligned_cols=30 Identities=33% Similarity=0.423 Sum_probs=24.7
Q ss_pred eeeeeeccCCCcccccCchhHHHHHHHHhhcCC
Q 024640 43 VALIIFSNRGKLYEFCSSPSIMKTLERYHRCSF 75 (265)
Q Consensus 43 ValIiFS~~Gkl~ef~S~~sm~~iLeRY~~~~~ 75 (265)
||||||+| +||++.. .++.+.+..|++...
T Consensus 16 VaLlvfGp-kkLP~l~--r~lGk~ir~fK~~~~ 45 (78)
T 2l16_A 16 IALIIFGP-SKLPEIG--RAAGRTLLEFKSATK 45 (78)
T ss_dssp HHHHHSCT-TTHHHHH--HHHHHHHHHHHHHHH
T ss_pred HHhheeCc-cHhHHHH--HHHHHHHHHHHHHHH
Confidence 78999997 5999998 368888888888654
No 15
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=58.23 E-value=14 Score=24.47 Aligned_cols=26 Identities=23% Similarity=0.423 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHh
Q 024640 145 CMVDQLSDLQKREQVLLELNKGLRKK 170 (265)
Q Consensus 145 lm~~qi~~LqkKe~~L~eeN~~L~~k 170 (265)
.|..++++|+.|...|.+++..|+.+
T Consensus 23 aLk~E~~eLk~k~~~L~~~~~el~~~ 48 (53)
T 2yy0_A 23 LLRLELAEMKEKYEAIVEENKKLKAK 48 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567789999999999999999988
No 16
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=55.94 E-value=21 Score=26.77 Aligned_cols=55 Identities=18% Similarity=0.226 Sum_probs=34.5
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCHHHHHHHHHHHHhchhhhhhhhhhhHHHHHHHHHHHHHHHHHHhHHH
Q 024640 88 QSTYQEYLRLKTAVELLQRSQRNLLGEDLDPLSTKELEQLEHQLETSLKHVRSTKTQCMVDQLSDLQKREQVLLELNKGL 167 (265)
Q Consensus 88 q~~~~E~~kLk~kie~Lq~~~R~llGedL~~Ls~~EL~qLE~qLe~sL~~IRsrK~qlm~~qi~~LqkKe~~L~eeN~~L 167 (265)
+.+-+||..|.++++.++...+.+ +++.. -.-.+|.+|..+...|..+|..|
T Consensus 33 qELIqEYl~LE~~~s~le~e~~rl-------------r~~~~---------------~~~~~v~eLe~everL~~ENq~L 84 (104)
T 3s9g_A 33 QELIKEYLELEKSLSRMEDENNRL-------------RLESK---------------RLDARVRELELELDRLRAENLQL 84 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHH---------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------------HHHhc---------------cchhhHHHHHHHHHHHHHHHHHH
Confidence 356677777777777776554321 11111 11456677788888888888888
Q ss_pred HHh
Q 024640 168 RKK 170 (265)
Q Consensus 168 ~~k 170 (265)
+..
T Consensus 85 ~~e 87 (104)
T 3s9g_A 85 LTE 87 (104)
T ss_dssp HHH
T ss_pred HHH
Confidence 766
No 17
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=53.95 E-value=50 Score=27.31 Aligned_cols=46 Identities=24% Similarity=0.349 Sum_probs=33.7
Q ss_pred CCCCCCHHHHHHHHHHHHhchhhhhhhhhhhHH------HHHHHHHHHHHHH
Q 024640 115 DLDPLSTKELEQLEHQLETSLKHVRSTKTQCMV------DQLSDLQKREQVL 160 (265)
Q Consensus 115 dL~~Ls~~EL~qLE~qLe~sL~~IRsrK~qlm~------~qi~~LqkKe~~L 160 (265)
+|++||.++|+.+=++|...+..+-+-|..+-. -+|.+|..++..|
T Consensus 54 nid~Lse~~L~e~ckELh~~I~~LEeEKYDlE~kvkkqdyEI~dL~~rV~DL 105 (180)
T 1j1e_C 54 ELAGLGFAELQDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDL 105 (180)
T ss_dssp CGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchhHHHHHHHHHHH
Confidence 889999999999999999988888877766532 2344554444444
No 18
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=53.70 E-value=20 Score=24.45 Aligned_cols=32 Identities=22% Similarity=0.392 Sum_probs=25.1
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHh
Q 024640 135 LKHVRSTKTQCMVDQLSDLQKREQVLLELNKGLRKK 170 (265)
Q Consensus 135 L~~IRsrK~qlm~~qi~~LqkKe~~L~eeN~~L~~k 170 (265)
-.+.|.|| .+.+.+|..+...|..+|..|...
T Consensus 21 ArrsR~RK----~~~~~~Le~~v~~L~~eN~~L~~e 52 (63)
T 2dgc_A 21 ARRSRARK----LQRMKQLEDKVEELLSKNYHLENE 52 (63)
T ss_dssp HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666 456688899999999999999887
No 19
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=52.43 E-value=53 Score=34.39 Aligned_cols=80 Identities=18% Similarity=0.189 Sum_probs=41.1
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhcC--CCCCCCCHHHHHHHHHHHHhchhhhhhhhhhhHHHHHHHHHHHHHHHHHHhHH
Q 024640 89 STYQEYLRLKTAVELLQRSQRNLLG--EDLDPLSTKELEQLEHQLETSLKHVRSTKTQCMVDQLSDLQKREQVLLELNKG 166 (265)
Q Consensus 89 ~~~~E~~kLk~kie~Lq~~~R~llG--edL~~Ls~~EL~qLE~qLe~sL~~IRsrK~qlm~~qi~~LqkKe~~L~eeN~~ 166 (265)
.+..|+.+|+++++.|+.......- ..+..| -+|+..|+.+++...+.-...+.. ..+..++|+.|...|.++|..
T Consensus 957 ~~~~e~~~L~~~l~~le~~~~e~~~~~~~v~~L-~~e~~~l~~~~~~~~ke~~~lee~-~~~~~~~L~~kv~~L~~e~~~ 1034 (1080)
T 2dfs_A 957 TYSTETEKLRSDVERLRMSEEEAKNATNRVLSL-QEEIAKLRKELHQTQTEKKTIEEW-ADKYKHETEQLVSELKEQNTL 1034 (1080)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 3456677776666665553221110 000000 123444444444444433322222 222336788889999999999
Q ss_pred HHHh
Q 024640 167 LRKK 170 (265)
Q Consensus 167 L~~k 170 (265)
|+.+
T Consensus 1035 L~qq 1038 (1080)
T 2dfs_A 1035 LKTE 1038 (1080)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9998
No 20
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=50.65 E-value=32 Score=21.62 Aligned_cols=26 Identities=27% Similarity=0.281 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHh
Q 024640 145 CMVDQLSDLQKREQVLLELNKGLRKK 170 (265)
Q Consensus 145 lm~~qi~~LqkKe~~L~eeN~~L~~k 170 (265)
-|.....+|..+.-.|+.||..||+.
T Consensus 14 ~le~~naeLEervstLq~EN~mLRqv 39 (42)
T 2oqq_A 14 DLENKNSELEERLSTLQNENQMLRHI 39 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 45566778888888999999999886
No 21
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=50.47 E-value=69 Score=23.17 Aligned_cols=26 Identities=4% Similarity=0.161 Sum_probs=18.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHh
Q 024640 145 CMVDQLSDLQKREQVLLELNKGLRKK 170 (265)
Q Consensus 145 lm~~qi~~LqkKe~~L~eeN~~L~~k 170 (265)
.+...|..|.++...+.++-..|+.+
T Consensus 76 ~i~~~i~~le~~~~~~~~~l~~lk~~ 101 (107)
T 1fxk_A 76 TLQLREKTIERQEERVMKKLQEMQVN 101 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777777777777777666
No 22
>2xus_A Breast cancer metastasis-suppressor 1; protein binding; 1.912A {Homo sapiens}
Probab=48.55 E-value=43 Score=21.79 Aligned_cols=34 Identities=26% Similarity=0.322 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHhchhhhhhhhhhhHHHHHHHHHHHHHHHH
Q 024640 121 TKELEQLEHQLETSLKHVRSTKTQCMVDQLSDLQKREQVLL 161 (265)
Q Consensus 121 ~~EL~qLE~qLe~sL~~IRsrK~qlm~~qi~~LqkKe~~L~ 161 (265)
+++|..||++. -.-|.|+..+.|..++++..++.
T Consensus 12 ld~l~~LEkqF-------~~LkEqlY~ERl~ql~~~Leel~ 45 (49)
T 2xus_A 12 VSEMLDLEKQF-------SELKEKLFRERLSQLRLRLEEVG 45 (49)
T ss_dssp HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777777553 33578888888888888766553
No 23
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=48.30 E-value=22 Score=21.38 Aligned_cols=26 Identities=15% Similarity=0.327 Sum_probs=19.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhHH
Q 024640 141 TKTQCMVDQLSDLQKREQVLLELNKG 166 (265)
Q Consensus 141 rK~qlm~~qi~~LqkKe~~L~eeN~~ 166 (265)
||++-....|++|+++-..|.++-+.
T Consensus 7 rKn~a~qqDIddlkrQN~~Le~Qir~ 32 (34)
T 1a93_B 7 RKNDTHQQDIDDLKRQNALLEQQVRA 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhHhhHHHHHHHHHHHHHHHHh
Confidence 67888888888888777766665443
No 24
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=45.69 E-value=33 Score=22.61 Aligned_cols=30 Identities=30% Similarity=0.375 Sum_probs=23.6
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHh
Q 024640 137 HVRSTKTQCMVDQLSDLQKREQVLLELNKGLRKK 170 (265)
Q Consensus 137 ~IRsrK~qlm~~qi~~LqkKe~~L~eeN~~L~~k 170 (265)
.-|.||. ..+++|..+...|..+|..|+.+
T Consensus 15 rSR~RKk----~~~~~LE~~v~~L~~eN~~L~~~ 44 (55)
T 1dh3_A 15 ESRRKKK----EYVKSLENRVAVLENQNKTLIEE 44 (55)
T ss_dssp HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456664 44678888999999999999988
No 25
>3nrf_A APAG protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; 1.50A {Pseudomonas aeruginosa} PDB: 3sb3_A
Probab=42.60 E-value=4.3 Score=30.87 Aligned_cols=44 Identities=23% Similarity=0.307 Sum_probs=35.7
Q ss_pred eccCCCcceehhhhccchhhhhhhhhcccCcceeeeeeccCCCcccccC
Q 024640 11 IENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 59 (265)
Q Consensus 11 Ien~~~RqvTfsKRr~GL~KKA~ELSvLCdaeValIiFS~~Gkl~ef~S 59 (265)
|+++.-...||-=.-..|.+|.-+||.+| ++.|++.||-|..-+
T Consensus 21 ~~~k~~ytktFdV~vaNl~~~~idLsk~C-----~~a~~~~gkef~ldT 64 (106)
T 3nrf_A 21 VGDKHFRTQAFKVRLVNAAKSEISLKNSC-----LVAQSAAGQSFRLDT 64 (106)
T ss_dssp ETTEEEEEEEEEEEEECCSSSCEECTTCE-----EEEEETTSCEEEEEE
T ss_pred eCCeeEEEEEEEEEEecCCCCccccchhh-----heeeCcCCCEEEecc
Confidence 45566667788888899999999999776 999999999776643
No 26
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=41.99 E-value=32 Score=26.01 Aligned_cols=31 Identities=19% Similarity=0.283 Sum_probs=26.5
Q ss_pred CCCCCCHHHHHHHHHHHHhchhhhhhhhhhh
Q 024640 115 DLDPLSTKELEQLEHQLETSLKHVRSTKTQC 145 (265)
Q Consensus 115 dL~~Ls~~EL~qLE~qLe~sL~~IRsrK~ql 145 (265)
++++||.++|+.+=++|...+..+-+-|..+
T Consensus 38 ~id~l~~~~L~e~~keLh~~I~~lEeEKYDl 68 (107)
T 1ytz_T 38 NIDHLNEDKLRDKAKELWDWLYQLQTEKYDF 68 (107)
T ss_dssp CCSSSCSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 8899999999999999999888877776554
No 27
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=40.79 E-value=1.9e+02 Score=26.64 Aligned_cols=9 Identities=0% Similarity=0.146 Sum_probs=6.2
Q ss_pred HHHHHHHHh
Q 024640 63 IMKTLERYH 71 (265)
Q Consensus 63 m~~iLeRY~ 71 (265)
|+.+|++..
T Consensus 54 Lqg~Ldk~e 62 (390)
T 1deq_A 54 MKGLIDEVD 62 (390)
T ss_pred HHHHHHHhh
Confidence 777776664
No 28
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=39.61 E-value=45 Score=22.49 Aligned_cols=24 Identities=17% Similarity=0.196 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHh
Q 024640 147 VDQLSDLQKREQVLLELNKGLRKK 170 (265)
Q Consensus 147 ~~qi~~LqkKe~~L~eeN~~L~~k 170 (265)
.+.+++|..+...|..+|..|+.+
T Consensus 22 k~~~~~le~~~~~L~~~N~~L~~~ 45 (63)
T 1ci6_A 22 RAEQEALTGECKELEKKNEALKER 45 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677888888888888888887
No 29
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=39.43 E-value=51 Score=28.72 Aligned_cols=44 Identities=16% Similarity=0.330 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHhchhhhhhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHh
Q 024640 122 KELEQLEHQLETSLKHVRSTKTQCMVDQLSDLQKREQVLLELNKGLRKK 170 (265)
Q Consensus 122 ~EL~qLE~qLe~sL~~IRsrK~qlm~~qi~~LqkKe~~L~eeN~~L~~k 170 (265)
+.+.+|+.+++. -..|++.+.+.+.+++++...|.+++..|+.=
T Consensus 54 ~~l~eL~~ql~~-----L~arNe~L~~~Lk~ar~El~~LkeElerL~sP 97 (251)
T 3m9b_A 54 RDIHQLEARIDS-----LAARNSKLMETLKEARQQLLALREEVDRLGQP 97 (251)
T ss_dssp HHHHHHHHHHHH-----HTTTHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 346666666543 23456677888999999999999999998663
No 30
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=38.32 E-value=1e+02 Score=24.15 Aligned_cols=48 Identities=15% Similarity=0.080 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhchhhhhhhhhhhH--HHHHHHHHHHHHHHHHHhHHHHHh
Q 024640 123 ELEQLEHQLETSLKHVRSTKTQCM--VDQLSDLQKREQVLLELNKGLRKK 170 (265)
Q Consensus 123 EL~qLE~qLe~sL~~IRsrK~qlm--~~qi~~LqkKe~~L~eeN~~L~~k 170 (265)
+...|+.+++.--+.|-+-|.++. ...++.++++...|.+++..|.++
T Consensus 76 ~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~ 125 (138)
T 3hnw_A 76 MADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKN 125 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666665555555565543 334455555566666666666666
No 31
>1m2d_A [2Fe-2S] ferredoxin; thioredoxin-like fold, [2Fe-2S] cluster, Cys59Ser variant, electron transport; 1.05A {Aquifex aeolicus} SCOP: c.47.1.11 PDB: 1m2a_A 1f37_A 1m2b_A
Probab=38.11 E-value=18 Score=26.83 Aligned_cols=34 Identities=9% Similarity=0.209 Sum_probs=25.8
Q ss_pred ccCcceeeeeeccCCCcccccCchhHHHHHHHHhh
Q 024640 38 LCDAEVALIIFSNRGKLYEFCSSPSIMKTLERYHR 72 (265)
Q Consensus 38 LCdaeValIiFS~~Gkl~ef~S~~sm~~iLeRY~~ 72 (265)
.|+-.-.|+|+ |+|.+|...++..+.+||+.|..
T Consensus 58 ~C~~gP~v~V~-P~~~~y~~vt~e~v~~il~~~l~ 91 (110)
T 1m2d_A 58 ASMMGPVVVVY-PDGVWYGQVKPEDVDEIVEKHLK 91 (110)
T ss_dssp CGGGCSCEEEE-TTTEEECSCCGGGHHHHHHHTTT
T ss_pred ccCCCCEEEEE-eCCEEEecCCHHHHHHHHHHHHH
Confidence 36555556666 88988988888889999999753
No 32
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=38.01 E-value=48 Score=22.25 Aligned_cols=30 Identities=17% Similarity=0.250 Sum_probs=23.5
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHh
Q 024640 137 HVRSTKTQCMVDQLSDLQKREQVLLELNKGLRKK 170 (265)
Q Consensus 137 ~IRsrK~qlm~~qi~~LqkKe~~L~eeN~~L~~k 170 (265)
+-|.|| .+.+.+|+.+...|..+|..|+..
T Consensus 16 rcR~rK----k~~~~~Le~~v~~L~~~n~~L~~e 45 (63)
T 2wt7_A 16 KCRNRR----RELTDTLQAETDQLEDEKSALQTE 45 (63)
T ss_dssp HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566 455678899999999999999988
No 33
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=37.69 E-value=78 Score=23.23 Aligned_cols=25 Identities=28% Similarity=0.324 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHh
Q 024640 146 MVDQLSDLQKREQVLLELNKGLRKK 170 (265)
Q Consensus 146 m~~qi~~LqkKe~~L~eeN~~L~~k 170 (265)
+...|..|.++...+.++-..|+.+
T Consensus 82 ie~~i~~le~~~~~l~~~l~~lk~~ 106 (117)
T 2zqm_A 82 LEVRLNALERQEKKLNEKLKELTAQ 106 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677778888877777777777777
No 34
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=37.22 E-value=2.6e+02 Score=26.10 Aligned_cols=26 Identities=19% Similarity=0.217 Sum_probs=15.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHh
Q 024640 145 CMVDQLSDLQKREQVLLELNKGLRKK 170 (265)
Q Consensus 145 lm~~qi~~LqkKe~~L~eeN~~L~~k 170 (265)
-+..+++..+++...+.+++..++.+
T Consensus 548 ~le~~~~~~~~~~~~l~~e~~~~~~~ 573 (597)
T 3oja_B 548 ALEKQLDNKRAKQAELRQETSLKRQK 573 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 34445555555566666666666666
No 35
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=36.70 E-value=57 Score=21.64 Aligned_cols=30 Identities=23% Similarity=0.327 Sum_probs=22.3
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHh
Q 024640 137 HVRSTKTQCMVDQLSDLQKREQVLLELNKGLRKK 170 (265)
Q Consensus 137 ~IRsrK~qlm~~qi~~LqkKe~~L~eeN~~L~~k 170 (265)
+-|.||. +.+++|+.+...|..+|..|+.+
T Consensus 15 k~R~rKk----~~~~~Le~~~~~L~~~n~~L~~~ 44 (61)
T 1t2k_D 15 RSRQKRK----VWVQSLEKKAEDLSSLNGQLQSE 44 (61)
T ss_dssp HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455663 45578888888888888888887
No 36
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}
Probab=36.55 E-value=2.4e+02 Score=29.78 Aligned_cols=43 Identities=16% Similarity=0.315 Sum_probs=28.5
Q ss_pred cchhhhhhhhhcccCcceeeeeeccCCCcccccCchhHHHHHHHHhhc
Q 024640 26 NGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSPSIMKTLERYHRC 73 (265)
Q Consensus 26 ~GL~KKA~ELSvLCdaeValIiFS~~Gkl~ef~S~~sm~~iLeRY~~~ 73 (265)
++|+|+-. |..-..+ .-+++|.+.|++..|. ++.+||+-|-.+
T Consensus 958 ~~L~k~t~-L~~s~~~-~Nm~~~d~~g~i~k~~---~l~eiL~~f~~~ 1000 (1177)
T 4gfh_A 958 IGFYERFK-LISPISL-MNMVAFDPHGKIKKYN---SVNEILSEFYYV 1000 (1177)
T ss_dssp HCHHHHTT-CEEEECC-SCCEEECTTSCEEECS---SHHHHHHHHHHH
T ss_pred HhHHHhcc-Ccceecc-eEEEEEcCCCCccCcC---CHHHHHHHHHHH
Confidence 45655533 4333322 1578999999999997 478888877654
No 37
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=35.33 E-value=1.5e+02 Score=22.90 Aligned_cols=52 Identities=19% Similarity=0.166 Sum_probs=37.6
Q ss_pred CCCHHHHHHHHHHHHhchhhhhhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHh
Q 024640 118 PLSTKELEQLEHQLETSLKHVRSTKTQCMVDQLSDLQKREQVLLELNKGLRKK 170 (265)
Q Consensus 118 ~Ls~~EL~qLE~qLe~sL~~IRsrK~qlm~~qi~~LqkKe~~L~eeN~~L~~k 170 (265)
++|++|+..+-...+.+-..+..+ .+++.+++..+..+...|++.-..|..+
T Consensus 59 G~sL~eIk~~l~~~~~~~~~~~~~-~~~L~~~~~~l~~~i~~L~~~~~~L~~~ 110 (142)
T 3gp4_A 59 GLSIEALIDYLALFREGEHTLEAR-AELLKKQRIELKNRIDVMQEALDRLDFK 110 (142)
T ss_dssp TCCHHHHHHHHHHHHHCGGGHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhccCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 489999988876655443333332 4577888888888888888888888877
No 38
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=35.08 E-value=62 Score=21.55 Aligned_cols=31 Identities=19% Similarity=0.359 Sum_probs=24.3
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHh
Q 024640 136 KHVRSTKTQCMVDQLSDLQKREQVLLELNKGLRKK 170 (265)
Q Consensus 136 ~~IRsrK~qlm~~qi~~LqkKe~~L~eeN~~L~~k 170 (265)
.+-|.|| .+.+.+|..+...|..+|..|...
T Consensus 14 ~k~R~rK----k~~~~~Le~~v~~L~~~n~~L~~~ 44 (62)
T 1jnm_A 14 SKSRKRK----LERIARLEEKVKTLKAQNSELAST 44 (62)
T ss_dssp HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666 455688999999999999999988
No 39
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=35.07 E-value=50 Score=23.01 Aligned_cols=35 Identities=23% Similarity=0.252 Sum_probs=17.6
Q ss_pred hhhhhhhhhh---HHHHHHHHHHHHHHHHHHhHHHHHh
Q 024640 136 KHVRSTKTQC---MVDQLSDLQKREQVLLELNKGLRKK 170 (265)
Q Consensus 136 ~~IRsrK~ql---m~~qi~~LqkKe~~L~eeN~~L~~k 170 (265)
...|.||.+- +..++.+|......|..+|..|+..
T Consensus 21 RafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~ 58 (70)
T 1gd2_E 21 RAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQK 58 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666543 2334444444444455566666555
No 40
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=34.89 E-value=1.1e+02 Score=24.65 Aligned_cols=49 Identities=18% Similarity=0.230 Sum_probs=34.9
Q ss_pred CHHHHHHHHHHHHhchhhhhhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHh
Q 024640 120 STKELEQLEHQLETSLKHVRSTKTQCMVDQLSDLQKREQVLLELNKGLRKK 170 (265)
Q Consensus 120 s~~EL~qLE~qLe~sL~~IRsrK~qlm~~qi~~LqkKe~~L~eeN~~L~~k 170 (265)
|..|.+.||..-...+.+|+.++.+| .++...+.=-+.|.+-|+.+..+
T Consensus 3 s~qe~~~Le~Ek~~~~~rI~~K~~~L--qeL~~Q~vafknLv~RN~~~e~~ 51 (155)
T 2aze_A 3 FAQECQNLEVERQRRLERIKQKQSQL--QELILQQIAFKNLVQRNRHAEQQ 51 (155)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhc
Confidence 67888999988888888888665543 33333344456788889888765
No 41
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=31.55 E-value=64 Score=17.78 Aligned_cols=21 Identities=24% Similarity=0.398 Sum_probs=13.2
Q ss_pred hhHHHHHHHHHHHHHHHHhhh
Q 024640 89 STYQEYLRLKTAVELLQRSQR 109 (265)
Q Consensus 89 ~~~~E~~kLk~kie~Lq~~~R 109 (265)
.++.|+..|++++.+|++..|
T Consensus 5 elykeledlqerlrklrkklr 25 (27)
T 3twe_A 5 ELYKELEDLQERLRKLRKKLR 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 456666667766666665544
No 42
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=31.26 E-value=34 Score=19.50 Aligned_cols=14 Identities=36% Similarity=0.237 Sum_probs=11.5
Q ss_pred HHHHHHHhHHHHHh
Q 024640 157 EQVLLELNKGLRKK 170 (265)
Q Consensus 157 e~~L~eeN~~L~~k 170 (265)
...|+.+|++|+.|
T Consensus 8 lasleaenkqlkak 21 (31)
T 1p9i_A 8 LASLEAENKQLKAK 21 (31)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45678899999998
No 43
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=30.71 E-value=6 Score=28.39 Aligned_cols=34 Identities=18% Similarity=0.423 Sum_probs=28.1
Q ss_pred hhhhhhhhcccCcceeeeeeccCCCcccccCchhHHHHHHHHhhcC
Q 024640 29 LKKAYELSVLCDAEVALIIFSNRGKLYEFCSSPSIMKTLERYHRCS 74 (265)
Q Consensus 29 ~KKA~ELSvLCdaeValIiFS~~Gkl~ef~S~~sm~~iLeRY~~~~ 74 (265)
+|+|+|.+.+++=|.|++.|. ++..-|+||....
T Consensus 16 ~k~ARe~Al~GnYdta~~yY~------------g~~~qI~k~l~~~ 49 (78)
T 2rpa_A 16 VKLAREYALLGNYDSAMVYYQ------------GVLDQMNKYLYSV 49 (78)
T ss_dssp HHHHHHHHHHTCCHHHHHHHH------------HHHHHHHHHHHTC
T ss_pred HHHHHHHHHhcChHHHHHHHH------------HHHHHHHHHHHhc
Confidence 689999999999888877653 5788889998764
No 44
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=30.56 E-value=25 Score=24.84 Aligned_cols=26 Identities=8% Similarity=0.301 Sum_probs=21.2
Q ss_pred eeeeeccCCCcccccCchhHHHHHHH
Q 024640 44 ALIIFSNRGKLYEFCSSPSIMKTLER 69 (265)
Q Consensus 44 alIiFS~~Gkl~ef~S~~sm~~iLeR 69 (265)
-+.||.|+|.+++|+..+++.++..+
T Consensus 7 ~i~v~tP~G~~~~lp~GaT~~D~A~~ 32 (78)
T 3hvz_A 7 EVFVFTPKGDVISLPIGSTVIDFAYA 32 (78)
T ss_dssp EEEEECTTSCEEEEETTCBHHHHHHH
T ss_pred eEEEECCCCCEEEecCCCCHHHHHHH
Confidence 37899999999999987777777644
No 45
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=30.56 E-value=77 Score=19.90 Aligned_cols=17 Identities=41% Similarity=0.462 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 024640 147 VDQLSDLQKREQVLLEL 163 (265)
Q Consensus 147 ~~qi~~LqkKe~~L~ee 163 (265)
.++|.+||+|.+.|++.
T Consensus 22 e~kI~~lqkKlkeLee~ 38 (42)
T 2l5g_B 22 EQQISKLKKKQQQLEEE 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 35678888888888775
No 46
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=29.56 E-value=2.2e+02 Score=24.12 Aligned_cols=39 Identities=10% Similarity=0.275 Sum_probs=24.6
Q ss_pred CHHHHHHHHHHHHhchhhhhhhhhhh--HHHHHHHHHHHHH
Q 024640 120 STKELEQLEHQLETSLKHVRSTKTQC--MVDQLSDLQKREQ 158 (265)
Q Consensus 120 s~~EL~qLE~qLe~sL~~IRsrK~ql--m~~qi~~LqkKe~ 158 (265)
+.+|+..|.+.++..-.+|...-.++ ++++++.++....
T Consensus 88 ~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~ 128 (256)
T 3na7_A 88 SERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQE 128 (256)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77899999888887776665554443 3445544444433
No 47
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=29.29 E-value=82 Score=20.91 Aligned_cols=27 Identities=30% Similarity=0.391 Sum_probs=20.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHhHHHHHh
Q 024640 144 QCMVDQLSDLQKREQVLLELNKGLRKK 170 (265)
Q Consensus 144 qlm~~qi~~LqkKe~~L~eeN~~L~~k 170 (265)
..+.+-+-.|+.....|..+|+.|++-
T Consensus 6 KSlVDtVYaLkDqV~eL~qe~k~m~k~ 32 (56)
T 2w6b_A 6 KSLVDTVYALKDEVQELRQDNKKMKKS 32 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777788888888888888877
No 48
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=28.97 E-value=1.1e+02 Score=19.05 Aligned_cols=17 Identities=35% Similarity=0.577 Sum_probs=13.8
Q ss_pred CCCCHHHHHHHHHHHHh
Q 024640 117 DPLSTKELEQLEHQLET 133 (265)
Q Consensus 117 ~~Ls~~EL~qLE~qLe~ 133 (265)
++.|.+||..||..|..
T Consensus 15 egfspeelaaleselqa 31 (48)
T 1g6u_A 15 EGFSPEELAALESELQA 31 (48)
T ss_dssp TTCSHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHH
Confidence 46899999999987654
No 49
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=28.34 E-value=1.1e+02 Score=18.79 Aligned_cols=27 Identities=22% Similarity=0.239 Sum_probs=21.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHhHHHHHh
Q 024640 144 QCMVDQLSDLQKREQVLLELNKGLRKK 170 (265)
Q Consensus 144 qlm~~qi~~LqkKe~~L~eeN~~L~~k 170 (265)
+-+.+.+...=.|++.|+.+|+.|..+
T Consensus 9 q~LNdrlAsyidkVR~LE~~N~~Le~~ 35 (39)
T 1gk7_A 9 QELNDRFANYIDKVRFLEQQNKILLAE 35 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666678899999999999888
No 50
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=27.66 E-value=58 Score=19.47 Aligned_cols=21 Identities=24% Similarity=0.338 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHh
Q 024640 150 LSDLQKREQVLLELNKGLRKK 170 (265)
Q Consensus 150 i~~LqkKe~~L~eeN~~L~~k 170 (265)
+.+|..|...|..+|..|...
T Consensus 3 MnQLE~kVEeLl~~n~~Le~e 23 (34)
T 2oxj_A 3 MXQLEXKVXELLXKNXHLEXE 23 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHH
Confidence 345555666666666666554
No 51
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=27.50 E-value=2.4e+02 Score=22.57 Aligned_cols=22 Identities=18% Similarity=0.108 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHh
Q 024640 149 QLSDLQKREQVLLELNKGLRKK 170 (265)
Q Consensus 149 qi~~LqkKe~~L~eeN~~L~~k 170 (265)
+...+..|.+.|++||..|-.+
T Consensus 111 q~n~lE~kl~kLq~EN~~LV~R 132 (152)
T 3a7p_A 111 ENNVLQQKLSDLKKEHSQLVAR 132 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667788888988777655
No 52
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=27.05 E-value=96 Score=22.25 Aligned_cols=29 Identities=31% Similarity=0.330 Sum_probs=23.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhHHHHHh
Q 024640 142 KTQCMVDQLSDLQKREQVLLELNKGLRKK 170 (265)
Q Consensus 142 K~qlm~~qi~~LqkKe~~L~eeN~~L~~k 170 (265)
|.+-..+.|.-||.....|.++|..|...
T Consensus 14 KIq~avdtI~lLqmEieELKekN~~L~~e 42 (81)
T 2jee_A 14 KVQQAIDTITLLQMEIEELKEKNNSLSQE 42 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677888888888888888888888887
No 53
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=25.58 E-value=68 Score=26.57 Aligned_cols=25 Identities=20% Similarity=0.329 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHh
Q 024640 146 MVDQLSDLQKREQVLLELNKGLRKK 170 (265)
Q Consensus 146 m~~qi~~LqkKe~~L~eeN~~L~~k 170 (265)
-.++|.+|+.+...|++||..|.+.
T Consensus 159 ~L~~i~~L~a~N~hLqkENeRL~~e 183 (186)
T 3q4f_C 159 CLDTIAENQAKNEHLQKENERLLRD 183 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3577889999999999999999875
No 54
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=25.47 E-value=3e+02 Score=23.16 Aligned_cols=27 Identities=26% Similarity=0.049 Sum_probs=15.6
Q ss_pred cchhhhHHHHHHHHHHHHHHHHhhhhh
Q 024640 85 IETQSTYQEYLRLKTAVELLQRSQRNL 111 (265)
Q Consensus 85 ~e~q~~~~E~~kLk~kie~Lq~~~R~l 111 (265)
.+.+.+..|+..++.++..+......+
T Consensus 90 kE~~aL~kEie~~~~~i~~lE~eile~ 116 (256)
T 3na7_A 90 RELRSLNIEEDIAKERSNQANREIENL 116 (256)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556666666666666665554443
No 55
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=25.29 E-value=1.5e+02 Score=22.28 Aligned_cols=31 Identities=16% Similarity=0.282 Sum_probs=26.6
Q ss_pred CCCCCCHHHHHHHHHHHHhchhhhhhhhhhh
Q 024640 115 DLDPLSTKELEQLEHQLETSLKHVRSTKTQC 145 (265)
Q Consensus 115 dL~~Ls~~EL~qLE~qLe~sL~~IRsrK~ql 145 (265)
++++||.++|+.+=++|...+..+-+-|..+
T Consensus 38 ~id~l~~~~L~e~~keLh~~I~~LEeEKYDl 68 (106)
T 1j1d_B 38 AIDHLNEDQLREKAKELWQTIYNLEAEKFDL 68 (106)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 7899999999999999999888887777554
No 56
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=25.03 E-value=2.4e+02 Score=21.77 Aligned_cols=52 Identities=12% Similarity=0.047 Sum_probs=37.1
Q ss_pred CCCHHHHHHHHHHHHhchhhhhhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHh
Q 024640 118 PLSTKELEQLEHQLETSLKHVRSTKTQCMVDQLSDLQKREQVLLELNKGLRKK 170 (265)
Q Consensus 118 ~Ls~~EL~qLE~qLe~sL~~IRsrK~qlm~~qi~~LqkKe~~L~eeN~~L~~k 170 (265)
++|++|+..+-...+..-..+.. ..+++.+++..+.++...|++.-..|..+
T Consensus 73 G~sL~eIk~~l~~~~~~~~~~~~-~~~~l~~~~~~l~~~i~~L~~~~~~L~~~ 124 (148)
T 3gpv_A 73 GMPIQKIKQFIDWSMEGDSTILH-RLKLMKQQEANVLQLIQDTEKNLKKIQQK 124 (148)
T ss_dssp TCCHHHHHHHHHHHHHCGGGHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhhhcCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48999998887655443222322 23577888888888888888888888777
No 57
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=24.41 E-value=1.9e+02 Score=20.30 Aligned_cols=52 Identities=12% Similarity=0.178 Sum_probs=34.0
Q ss_pred CCCHHHHHHHHHHHHhchh-hhhhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHh
Q 024640 118 PLSTKELEQLEHQLETSLK-HVRSTKTQCMVDQLSDLQKREQVLLELNKGLRKK 170 (265)
Q Consensus 118 ~Ls~~EL~qLE~qLe~sL~-~IRsrK~qlm~~qi~~LqkKe~~L~eeN~~L~~k 170 (265)
++|++|+..+-...+..-. .+ ..-..++.+++..+.++...|...-..|..+
T Consensus 16 GfsL~eIk~~l~~~~~~~~~~~-~~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~ 68 (99)
T 1q08_A 16 GFSLESIRELLSIRIDPEHHTC-QESKGIVQERLQEVEARIAELQSMQRSLQRL 68 (99)
T ss_dssp TCCHHHHHHHHHHHHCGGGCBH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCcccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4999999988654432111 11 1224577778888888888887777777766
No 58
>1kaf_A Transcription regulatory protein MOTA; escherichia coli, X-RAY crystallography, protein-DNA interactions, structural genomics; 1.60A {Enterobacteria phage T4} SCOP: d.199.1.1
Probab=24.14 E-value=18 Score=27.54 Aligned_cols=53 Identities=19% Similarity=0.335 Sum_probs=37.2
Q ss_pred ceeeee-ccCCCcceehhhhccchhhhhhhhhcccCcceeeeeeccCCCcccccCchhHHHHHHHHhhcC
Q 024640 6 VELKRI-ENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSPSIMKTLERYHRCS 74 (265)
Q Consensus 6 v~ikrI-en~~~RqvTfsKRr~GL~KKA~ELSvLCdaeValIiFS~~Gkl~ef~S~~sm~~iLeRY~~~~ 74 (265)
+++|.+ +|.+|=.|+|+||-.|+-+ +=...+|.+-.|+-. -.+++++.|...-
T Consensus 23 ie~K~~~~~RSN~~i~f~KRt~GiRq---------------fEi~n~G~fRI~gYk-~se~~~~~f~slG 76 (108)
T 1kaf_A 23 FVLKKVEIYRSNYLAILEKRTNGIRN---------------FEINNNGNMRIFGYK-MMEHHIQKFTDIG 76 (108)
T ss_dssp CCEEEEEEETTEEEEEEEEEETTEEE---------------EEECTTSEEEEEEES-CCHHHHHHHHTTT
T ss_pred ceeeeeEeeccceEEeeecccCceeE---------------EEEecCCcEEEEEec-CCHHHHHHHHhcC
Confidence 777776 7889999999999999622 223577866555522 3577888887653
No 59
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=23.71 E-value=96 Score=17.06 Aligned_cols=22 Identities=23% Similarity=0.362 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHH
Q 024640 146 MVDQLSDLQKREQVLLELNKGL 167 (265)
Q Consensus 146 m~~qi~~LqkKe~~L~eeN~~L 167 (265)
+.+++.+|+-..+.|.++-+.|
T Consensus 5 lkdevgelkgevralkdevkdl 26 (27)
T 3v86_A 5 LKDEVGELKGEVRALKDEVKDL 26 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHhHHHHHHHHHhcc
Confidence 4567777887777777776655
No 60
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=23.08 E-value=1.1e+02 Score=18.71 Aligned_cols=22 Identities=23% Similarity=0.223 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHH
Q 024640 147 VDQLSDLQKREQVLLELNKGLR 168 (265)
Q Consensus 147 ~~qi~~LqkKe~~L~eeN~~L~ 168 (265)
.+||..|+.|...|.++.-.|-
T Consensus 14 keQi~~l~~kl~~LkeEKHQLF 35 (38)
T 2l5g_A 14 KEQILKLEEKLLALQEEKHQLF 35 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788888888888866653
No 61
>2lw9_A Unconventionnal myosin-X; MYO10 anti-CC, motor protein; NMR {Homo sapiens}
Probab=21.70 E-value=82 Score=20.43 Aligned_cols=37 Identities=30% Similarity=0.354 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhcCCCCCCCCHHHHHHHHH
Q 024640 92 QEYLRLKTAVELLQRSQRNLLGEDLDPLSTKELEQLEH 129 (265)
Q Consensus 92 ~E~~kLk~kie~Lq~~~R~llGedL~~Ls~~EL~qLE~ 129 (265)
.|+.+|..+|+.||+....-+ -.|..-|..+|+++-.
T Consensus 6 EEILRLErEIE~Lqrqke~~~-~~L~e~s~~eL~~~RD 42 (51)
T 2lw9_A 6 EEILRLEKEIEDLQRMKEQQE-LSLTEASLQKLQERRD 42 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHHCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHhHhHHHHHHHHHH
Confidence 578889999999987543211 1234456666666543
No 62
>2ky6_A Mediator of RNA polymerase II transcription subun; ARC, VP16 binding domain, acid, transcription REGU; NMR {Homo sapiens} PDB: 2l23_A 2l6u_A 2xnf_A
Probab=21.51 E-value=64 Score=26.25 Aligned_cols=38 Identities=13% Similarity=0.459 Sum_probs=27.9
Q ss_pred hcccCcceeeeeeccCCCccc-ccC-ch-----hHHHHHHHHhhc
Q 024640 36 SVLCDAEVALIIFSNRGKLYE-FCS-SP-----SIMKTLERYHRC 73 (265)
Q Consensus 36 SvLCdaeValIiFS~~Gkl~e-f~S-~~-----sm~~iLeRY~~~ 73 (265)
+.-|++.|-+++||++-+.|- |.- +. .+.+||+.|++.
T Consensus 116 ~~~ceiKvLiLlYs~~k~aflGfIPnDQ~~Fv~rlr~Viq~~k~~ 160 (166)
T 2ky6_A 116 TAPCEVRVLMLLYSSKKKIFMGLIPYDQSGFVNGIRQVITNHKQV 160 (166)
T ss_dssp TCCCSCCEEEEEECTTTCSEEEEEESSHHHHHHHHHHHHHHHHTT
T ss_pred CCCcceEEEEEEEcCCcceeeeeccCCHHHHHHHHHHHHHHHHHH
Confidence 456999999999999998876 542 22 367777777653
No 63
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=21.44 E-value=2.7e+02 Score=21.03 Aligned_cols=29 Identities=21% Similarity=0.273 Sum_probs=22.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhHHHHHh
Q 024640 142 KTQCMVDQLSDLQKREQVLLELNKGLRKK 170 (265)
Q Consensus 142 K~qlm~~qi~~LqkKe~~L~eeN~~L~~k 170 (265)
.......+++++..|-....|.|..|...
T Consensus 71 ~~R~t~~SLeD~E~k~n~aiErnalLE~E 99 (111)
T 2v66_B 71 AKRATIVSLEDFEQRLNQAIERNAFLESE 99 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 44456777888888888888888888877
No 64
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=20.74 E-value=2.8e+02 Score=21.07 Aligned_cols=69 Identities=13% Similarity=0.157 Sum_probs=43.1
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCHHHHHHHHHHHHhchhhhhhhhhhhHHHHHH--HHHHHHHHHHHHhHH
Q 024640 89 STYQEYLRLKTAVELLQRSQRNLLGEDLDPLSTKELEQLEHQLETSLKHVRSTKTQCMVDQLS--DLQKREQVLLELNKG 166 (265)
Q Consensus 89 ~~~~E~~kLk~kie~Lq~~~R~llGedL~~Ls~~EL~qLE~qLe~sL~~IRsrK~qlm~~qi~--~LqkKe~~L~eeN~~ 166 (265)
-+..|+.+|+...+.+-+..-.. -.+|--..+.-+..|| +|..+++..++ .++++...--..+++
T Consensus 36 PL~~ELeRLr~~~d~~~K~HE~k------------klqLkse~e~E~ae~k-~KYD~~lqe~ese~~~kkK~le~~~~kV 102 (115)
T 3vem_A 36 PFLHELEKLRRESENSKKTFEEK------------KSILKAELERKMAEVQ-AEFRRKFHEVEAEHNTRTTKIEKDKNLV 102 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788888888777765543321 3445555666677888 56666666665 555554444445666
Q ss_pred HHHh
Q 024640 167 LRKK 170 (265)
Q Consensus 167 L~~k 170 (265)
+..+
T Consensus 103 ~mNk 106 (115)
T 3vem_A 103 IMNK 106 (115)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6666
No 65
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=20.42 E-value=81 Score=18.74 Aligned_cols=20 Identities=25% Similarity=0.353 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHhHHHHHh
Q 024640 151 SDLQKREQVLLELNKGLRKK 170 (265)
Q Consensus 151 ~~LqkKe~~L~eeN~~L~~k 170 (265)
.+|..|...|..+|..|...
T Consensus 3 ~QLE~kVEeLl~~n~~Le~E 22 (33)
T 3m48_A 3 AQLEAKVEELLSKNWNLENE 22 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhHHHHHH
Confidence 34555666666666666554
Done!