BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 024641
         (265 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P47344|Y098_MYCGE Uncharacterized protein MG098 OS=Mycoplasma genitalium (strain ATCC
           33530 / G-37 / NCTC 10195) GN=MG098 PE=3 SV=1
          Length = 477

 Score = 33.5 bits (75), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 30/69 (43%), Gaps = 14/69 (20%)

Query: 122 IIGPII----AAGWDFFEAIYYGGTITEGFIRGTGTLFGAYAG---------GFLGEERL 168
           + GPII    AA  DF   I+ GG    G++ G   L G  AG          FL  + L
Sbjct: 108 LFGPIIGIFSAATIDFLTVIFSGGVFNIGYVLG-AILTGMIAGILREVLISTSFLNNKTL 166

Query: 169 GRFGYLVGS 177
             F YLV S
Sbjct: 167 SDFAYLVLS 175


>sp|A9A135|DNAK_NITMS Chaperone protein DnaK OS=Nitrosopumilus maritimus (strain SCM1)
           GN=dnaK PE=3 SV=1
          Length = 636

 Score = 33.5 bits (75), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 59/145 (40%), Gaps = 11/145 (7%)

Query: 75  VERARNVAIEKAVVDALSQGLSSNDAAKQAQKEGAKAAKLAKRQAKRIIGPIIAAGWDFF 134
           V+R +  +I+KA+ DA    LS++D  K     G     L K+    +IG  + +G D  
Sbjct: 290 VDRCKP-SIQKALEDA---KLSNSDINKIVMIGGPTRIPLVKKFVSEVIGKEVESGVDPM 345

Query: 135 EAIYYGGTITEGFIRGTGT---LFGAYAGGFLGEERLG--RFGYLVGSHLGSWAGGRIGL 189
           EA+  G  I  G I G  T   +        LG E LG  R   +  +     + G++  
Sbjct: 346 EAVAMGAAIQAGIIAGDVTSDIVLLDVTPLTLGIETLGGVREPLIERNTTIPTSKGKVFT 405

Query: 190 MIYDVVNGVHFLLQFVQSEESEAHD 214
              D  N     +  VQ E   A D
Sbjct: 406 TAAD--NQTAVTIHVVQGERPMATD 428


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.317    0.134    0.385 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,109,909
Number of Sequences: 539616
Number of extensions: 4192818
Number of successful extensions: 13847
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 13768
Number of HSP's gapped (non-prelim): 84
length of query: 265
length of database: 191,569,459
effective HSP length: 115
effective length of query: 150
effective length of database: 129,513,619
effective search space: 19427042850
effective search space used: 19427042850
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)