Query 024641
Match_columns 265
No_of_seqs 20 out of 22
Neff 1.9
Searched_HMMs 46136
Date Fri Mar 29 06:17:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024641.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024641hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01641 phageSPP1_gp7 phage 82.0 2.1 4.7E-05 32.3 3.8 54 83-136 1-55 (108)
2 cd01170 THZ_kinase 4-methyl-5- 76.7 5.1 0.00011 34.8 4.9 54 81-138 189-242 (242)
3 PF04233 Phage_Mu_F: Phage Mu 76.5 5.8 0.00013 29.3 4.5 53 82-134 2-56 (112)
4 PRK12412 pyridoxal kinase; Rev 69.2 11 0.00023 32.7 5.1 54 80-134 212-265 (268)
5 PRK00377 cbiT cobalt-precorrin 66.9 9.8 0.00021 31.3 4.2 60 21-84 22-87 (198)
6 PRK13699 putative methylase; P 64.6 5.1 0.00011 34.8 2.3 47 34-82 158-205 (227)
7 PRK10974 glycerol-3-phosphate 64.3 17 0.00037 32.7 5.6 37 81-117 399-435 (438)
8 PF03032 Brevenin: Brevenin/es 62.8 5.2 0.00011 28.6 1.6 22 6-27 4-25 (46)
9 PRK09355 hydroxyethylthiazole 61.1 23 0.00051 31.0 5.7 55 81-138 193-247 (263)
10 TIGR00097 HMP-P_kinase phospho 59.1 20 0.00043 30.5 4.8 45 81-126 207-251 (254)
11 TIGR02529 EutJ ethanolamine ut 58.2 31 0.00068 29.9 6.0 46 46-99 111-157 (239)
12 PRK06427 bifunctional hydroxy- 54.6 28 0.0006 29.5 4.9 40 80-119 214-253 (266)
13 PF12637 TSCPD: TSCPD domain; 54.5 41 0.00088 26.0 5.5 55 50-105 5-65 (95)
14 PF13356 DUF4102: Domain of un 52.5 16 0.00035 27.0 2.9 52 49-103 20-86 (89)
15 cd01171 YXKO-related B.subtili 51.7 46 0.001 28.1 5.8 67 50-118 172-239 (254)
16 TIGR03851 chitin_NgcE carbohyd 50.0 27 0.00058 31.5 4.4 34 80-113 410-443 (450)
17 PF08704 GCD14: tRNA methyltra 49.5 7.3 0.00016 35.0 0.7 34 50-83 49-86 (247)
18 PF14450 FtsA: Cell division p 47.8 45 0.00098 25.8 4.8 18 47-64 3-20 (120)
19 PRK12616 pyridoxal kinase; Rev 47.5 43 0.00093 29.1 5.1 46 80-126 215-260 (270)
20 TIGR00694 thiM hydroxyethylthi 47.0 57 0.0012 28.4 5.8 53 82-138 189-241 (249)
21 PF05433 Rick_17kDa_Anti: Glyc 46.9 1.4 3E-05 30.6 -3.3 37 151-187 1-41 (42)
22 PF05225 HTH_psq: helix-turn-h 45.1 34 0.00074 23.4 3.3 24 80-103 2-25 (45)
23 KOG1503 Phosphoribosylpyrophos 44.5 15 0.00032 35.3 2.0 22 182-203 244-265 (354)
24 PRK15080 ethanolamine utilizat 43.6 64 0.0014 28.4 5.7 47 46-100 138-185 (267)
25 PF12847 Methyltransf_18: Meth 43.3 9.6 0.00021 27.3 0.4 36 47-82 5-45 (112)
26 TIGR03126 one_C_fae formaldehy 43.0 68 0.0015 28.4 5.7 42 78-119 80-139 (160)
27 PHA03190 UL14 tegument protein 41.8 87 0.0019 28.6 6.3 43 67-109 8-58 (196)
28 PF08543 Phos_pyr_kin: Phospho 41.3 70 0.0015 27.5 5.4 45 81-126 201-245 (246)
29 PRK05808 3-hydroxybutyryl-CoA 39.7 30 0.00065 29.9 3.0 53 41-94 5-57 (282)
30 PF11104 PilM_2: Type IV pilus 37.1 1.6E+02 0.0034 26.5 7.1 103 44-155 181-287 (340)
31 PF07172 GRP: Glycine rich pro 36.6 47 0.001 26.3 3.4 26 5-30 3-28 (95)
32 PRK11524 putative methyltransf 36.0 23 0.0005 31.3 1.7 46 35-82 204-250 (284)
33 cd07579 nitrilase_1_R2 Second 35.9 21 0.00045 31.3 1.4 30 39-68 128-158 (279)
34 PTZ00247 adenosine kinase; Pro 35.5 75 0.0016 28.1 4.8 46 81-134 298-343 (345)
35 TIGR01174 ftsA cell division p 34.9 81 0.0018 28.5 5.0 26 45-70 198-224 (371)
36 TIGR01748 rhaA L-rhamnose isom 33.6 69 0.0015 31.9 4.7 56 72-134 332-387 (414)
37 PF01404 Ephrin_lbd: Ephrin re 33.5 26 0.00056 30.6 1.6 27 41-69 72-98 (178)
38 KOG2779 N-myristoyl transferas 33.4 21 0.00046 35.4 1.2 42 24-73 353-409 (421)
39 PRK07580 Mg-protoporphyrin IX 33.0 30 0.00066 28.0 1.9 39 45-83 65-106 (230)
40 COG5269 ZUO1 Ribosome-associat 33.0 78 0.0017 31.0 4.8 44 77-120 269-312 (379)
41 TIGR01231 lacC tagatose-6-phos 32.5 92 0.002 26.8 4.8 33 81-113 253-285 (309)
42 PF00288 GHMP_kinases_N: GHMP 32.3 96 0.0021 21.5 4.1 46 81-141 22-67 (67)
43 PRK01076 L-rhamnose isomerase; 31.8 76 0.0017 31.7 4.7 56 72-134 336-391 (419)
44 PRK08287 cobalt-precorrin-6Y C 31.3 55 0.0012 26.4 3.1 57 22-82 14-75 (187)
45 PF08714 Fae: Formaldehyde-act 31.0 90 0.0019 27.6 4.5 41 79-119 79-137 (159)
46 PF05298 Bombinin: Bombinin; 31.0 16 0.00035 31.4 0.0 72 54-129 56-131 (141)
47 PF11991 Trp_DMAT: Tryptophan 30.9 2.4E+02 0.0051 26.0 7.4 70 19-94 128-199 (361)
48 TIGR02707 butyr_kinase butyrat 30.8 1.2E+02 0.0027 28.3 5.7 117 24-146 160-306 (351)
49 TIGR01175 pilM type IV pilus a 30.5 3.1E+02 0.0066 24.2 7.8 113 29-151 174-291 (348)
50 TIGR00537 hemK_rel_arch HemK-r 30.2 38 0.00082 27.1 2.0 37 46-82 22-61 (179)
51 PF08241 Methyltransf_11: Meth 30.1 32 0.00068 23.2 1.3 36 48-83 1-40 (95)
52 TIGR02021 BchM-ChlM magnesium 29.5 37 0.00081 28.0 1.9 40 45-84 57-99 (219)
53 COG4598 HisP ABC-type histidin 29.2 11 0.00023 35.2 -1.5 24 34-57 38-65 (256)
54 PRK12413 phosphomethylpyrimidi 29.2 1.5E+02 0.0033 24.9 5.4 36 81-116 209-244 (253)
55 cd07581 nitrilase_3 Uncharacte 28.9 47 0.001 27.6 2.4 31 39-69 139-170 (255)
56 PF13679 Methyltransf_32: Meth 28.6 93 0.002 24.5 3.9 42 42-83 24-74 (141)
57 PF01555 N6_N4_Mtase: DNA meth 28.6 14 0.0003 29.1 -0.7 48 27-78 181-229 (231)
58 PLN03132 NADH dehydrogenase (u 28.4 61 0.0013 32.2 3.4 74 130-208 291-375 (461)
59 PRK01558 V-type ATP synthase s 28.3 1.5E+02 0.0033 25.4 5.4 15 69-83 11-25 (198)
60 cd00225 API3 Ascaris pepsin in 28.3 2E+02 0.0043 25.7 6.1 58 49-111 5-63 (159)
61 TIGR02279 PaaC-3OHAcCoADH 3-hy 28.2 54 0.0012 32.0 3.0 53 42-95 8-60 (503)
62 PHA02357 hypothetical protein 27.5 1E+02 0.0022 24.9 3.8 30 65-95 24-53 (81)
63 TIGR03850 bind_CPR_0540 carboh 27.5 1.1E+02 0.0024 27.2 4.5 32 80-111 404-435 (437)
64 PF03701 UPF0181: Uncharacteri 27.3 1.2E+02 0.0026 22.7 3.9 26 80-106 14-39 (51)
65 PRK09474 malE maltose ABC tran 26.9 89 0.0019 27.4 3.8 29 81-109 367-395 (396)
66 COG2519 GCD14 tRNA(1-methylade 26.9 23 0.00049 33.0 0.2 41 50-90 103-147 (256)
67 COG2937 PlsB Glycerol-3-phosph 26.7 1.3E+02 0.0029 32.3 5.6 53 80-132 222-275 (810)
68 PF14613 DUF4449: Protein of u 26.4 88 0.0019 27.2 3.7 28 77-104 29-56 (164)
69 PLN02798 nitrilase 26.4 54 0.0012 28.4 2.4 30 39-68 155-186 (286)
70 PF09429 Wbp11: WW domain bind 25.9 1.2E+02 0.0027 23.0 4.0 49 94-143 3-58 (78)
71 PRK12654 putative monovalent c 25.7 57 0.0012 28.1 2.4 53 40-92 49-109 (151)
72 PF13659 Methyltransf_26: Meth 25.5 49 0.0011 23.9 1.7 38 47-84 4-45 (117)
73 PRK09260 3-hydroxybutyryl-CoA 25.5 67 0.0014 28.0 2.8 50 44-94 6-55 (288)
74 cd07564 nitrilases_CHs Nitrila 25.3 49 0.0011 28.9 1.9 33 37-69 147-180 (297)
75 PF14014 DUF4230: Protein of u 25.0 1.1E+02 0.0024 24.1 3.7 34 98-131 109-149 (157)
76 PLN02545 3-hydroxybutyryl-CoA 24.7 92 0.002 27.1 3.5 53 42-95 7-59 (295)
77 PF06754 PhnG: Phosphonate met 24.5 2.5E+02 0.0054 23.7 5.9 53 77-134 84-139 (146)
78 PF08136 Ribosomal_S22: 30S ri 24.5 32 0.0007 25.1 0.6 11 115-125 3-13 (45)
79 TIGR03293 PhnG_redo phosphonat 24.4 2.6E+02 0.0055 23.7 5.9 57 76-134 82-138 (144)
80 TIGR00607 rad52 recombination 24.1 1E+02 0.0023 27.2 3.7 14 79-92 98-111 (161)
81 cd01169 HMPP_kinase 4-amino-5- 24.0 1.4E+02 0.0031 24.6 4.3 34 80-113 207-240 (242)
82 PRK13307 bifunctional formalde 23.5 1.8E+02 0.0038 28.3 5.4 42 78-119 81-140 (391)
83 PRK09472 ftsA cell division pr 23.2 1.5E+02 0.0032 27.8 4.7 41 45-91 206-247 (420)
84 PF06325 PrmA: Ribosomal prote 23.1 41 0.00089 31.0 1.1 51 37-91 159-213 (295)
85 PRK11730 fadB multifunctional 22.9 82 0.0018 32.0 3.2 57 41-98 315-371 (715)
86 PRK05114 hypothetical protein; 22.6 1.6E+02 0.0034 22.6 3.9 25 80-105 14-38 (59)
87 cd07573 CPA N-carbamoylputresc 22.5 66 0.0014 27.3 2.1 29 40-68 144-173 (284)
88 PRK07105 pyridoxamine kinase; 22.5 2.2E+02 0.0047 24.7 5.4 39 80-118 221-259 (284)
89 PRK03011 butyrate kinase; Prov 22.5 2.1E+02 0.0046 27.0 5.6 115 23-145 161-307 (358)
90 COG2064 TadC Flp pilus assembl 22.3 3.6E+02 0.0078 23.0 6.5 76 67-142 155-258 (320)
91 cd07197 nitrilase Nitrilase su 22.3 81 0.0018 25.6 2.5 29 40-68 136-165 (253)
92 PRK00302 lnt apolipoprotein N- 22.1 88 0.0019 29.7 3.1 49 39-87 372-431 (505)
93 PTZ00493 phosphomethylpyrimidi 22.0 2.3E+02 0.0051 26.6 5.8 58 81-144 252-309 (321)
94 TIGR03207 cyc_hxne_CoA_dh cycl 21.9 5.3E+02 0.012 22.9 7.7 47 91-138 301-347 (372)
95 PF06134 RhaA: L-rhamnose isom 21.7 1E+02 0.0022 30.8 3.6 55 72-134 335-390 (417)
96 cd07571 ALP_N-acyl_transferase 21.6 1E+02 0.0022 26.7 3.1 29 40-68 153-182 (270)
97 COG1126 GlnQ ABC-type polar am 21.6 1.5E+02 0.0032 27.8 4.3 67 36-109 36-122 (240)
98 PRK08573 phosphomethylpyrimidi 21.3 1.8E+02 0.0039 27.7 4.9 65 80-145 210-282 (448)
99 COG3134 Predicted outer membra 21.3 32 0.00069 30.8 0.0 34 152-185 73-106 (179)
100 PF15459 RRP14: 60S ribosome b 21.2 1E+02 0.0022 23.1 2.7 20 102-121 39-58 (64)
101 PF00176 SNF2_N: SNF2 family N 21.1 93 0.002 25.7 2.7 25 30-54 14-38 (299)
102 cd01941 YeiC_kinase_like YeiC- 21.0 2E+02 0.0043 23.9 4.7 31 81-111 255-285 (288)
103 COG3140 Uncharacterized protei 21.0 1.5E+02 0.0033 22.7 3.6 24 80-104 14-37 (60)
104 PRK00517 prmA ribosomal protei 20.9 62 0.0013 27.8 1.7 41 46-86 122-166 (250)
105 PF08989 DUF1896: Domain of un 20.9 1.7E+02 0.0037 25.5 4.3 30 78-107 35-64 (144)
106 PRK10294 6-phosphofructokinase 20.9 2E+02 0.0044 24.7 4.8 32 81-112 256-287 (309)
107 PRK08176 pdxK pyridoxal-pyrido 20.8 2.4E+02 0.0053 24.7 5.4 38 81-118 233-270 (281)
108 PF02737 3HCDH_N: 3-hydroxyacy 20.8 98 0.0021 25.7 2.8 49 50-99 10-58 (180)
109 PTZ00347 phosphomethylpyrimidi 20.7 1.3E+02 0.0029 28.8 4.0 36 81-116 445-480 (504)
110 PRK07819 3-hydroxybutyryl-CoA 20.6 99 0.0021 27.5 3.0 57 41-98 7-63 (286)
111 PRK06129 3-hydroxyacyl-CoA deh 20.5 82 0.0018 27.8 2.4 45 50-95 13-57 (308)
112 PRK09813 fructoselysine 6-kina 20.5 2.2E+02 0.0048 23.8 4.9 32 81-112 223-254 (260)
No 1
>TIGR01641 phageSPP1_gp7 phage putative head morphogenesis protein, SPP1 gp7 family. This model describes a region of about 110 amino acids found exclusively in phage-related proteins, internally or toward the C-terminus. One member, gp7 of phage SPP1, appears involved in head morphogenesis.
Probab=82.03 E-value=2.1 Score=32.28 Aligned_cols=54 Identities=24% Similarity=0.353 Sum_probs=38.6
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhc-chhhhhh
Q 024641 83 IEKAVVDALSQGLSSNDAAKQAQKEGAKAAKLAKRQAKRIIGPIIAA-GWDFFEA 136 (265)
Q Consensus 83 ~e~AL~da~~qGls~~eaAk~Aqk~g~kAAKlA~rQAkRI~GPiiss-gWDfFEa 136 (265)
+|.+|.+++.+|.++++-||.-++........|.+-|+-=+.-+.+. .|+.++.
T Consensus 1 ~~~~l~~gi~~G~~~~~iak~i~~~~~~~~~~A~~iarTe~~~a~~~~~~~~~~~ 55 (108)
T TIGR01641 1 VEDILADGVQRGLGPNELAKRLRKELGVQKHYAQRLARTETARIYNQTKLERYKK 55 (108)
T ss_pred ChHHHHHHHHcCCCHHHHHHHHHHHHCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999998887666555555555545544443 3555554
No 2
>cd01170 THZ_kinase 4-methyl-5-beta-hydroxyethylthiazole (Thz) kinase catalyzes the phosphorylation of the hydroxylgroup of Thz. A reaction that allows cells to recycle Thz into the thiamine biosynthesis pathway, as an alternative to its synthesis from cysteine, tyrosine and 1-deoxy-D-xylulose-5-phosphate.
Probab=76.74 E-value=5.1 Score=34.79 Aligned_cols=54 Identities=24% Similarity=0.261 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhcchhhhhhhh
Q 024641 81 VAIEKAVVDALSQGLSSNDAAKQAQKEGAKAAKLAKRQAKRIIGPIIAAGWDFFEAIY 138 (265)
Q Consensus 81 ~A~e~AL~da~~qGls~~eaAk~Aqk~g~kAAKlA~rQAkRI~GPiissgWDfFEalY 138 (265)
..+-.++.-.+.+|+++.+|++.|+.--.+|++.|.++.. ||= |-.-|+++.||
T Consensus 189 dtLa~aiAa~LA~g~~~~~A~~~A~~~~~~a~~~a~~~~~---~~~-~~~~~l~d~l~ 242 (242)
T cd01170 189 CLLGAVIAAFLAVGDDPLEAAVSAVLVYGIAGELAAERAK---GPG-SFRVALLDELY 242 (242)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhcCC---CCC-hHHHHHHHhhC
Confidence 3566788889999999999999999999999988865543 332 44568888887
No 3
>PF04233 Phage_Mu_F: Phage Mu protein F like protein; InterPro: IPR006528 This domain is found exclusively in phage-related proteins, internally or toward the C terminus. Some of these proteins have been identified as being involved in phage head morphogenesis [, ].
Probab=76.53 E-value=5.8 Score=29.35 Aligned_cols=53 Identities=26% Similarity=0.404 Sum_probs=35.0
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHH-HHHHHHHHhhhhhcchh-hcchhhh
Q 024641 82 AIEKAVVDALSQGLSSNDAAKQAQKEGAK-AAKLAKRQAKRIIGPII-AAGWDFF 134 (265)
Q Consensus 82 A~e~AL~da~~qGls~~eaAk~Aqk~g~k-AAKlA~rQAkRI~GPii-ssgWDfF 134 (265)
.|+++|.+++.+|.++++-++.-++.... ....|.+-|+-=+.-+. ++-|+.+
T Consensus 2 ~i~~~v~~~i~~G~~~~~~~~~l~~~~~~~~~~ra~~iarTe~~~a~~~a~~~~~ 56 (112)
T PF04233_consen 2 RIRQAVTQGIERGKSPQEIAKRLRDRGGVTSRYRAERIARTETARAYNAARWQQY 56 (112)
T ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47889999999999999999999888644 33344444443333332 2344443
No 4
>PRK12412 pyridoxal kinase; Reviewed
Probab=69.25 E-value=11 Score=32.68 Aligned_cols=54 Identities=19% Similarity=0.293 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhcchhhh
Q 024641 80 NVAIEKAVVDALSQGLSSNDAAKQAQKEGAKAAKLAKRQAKRIIGPIIAAGWDFF 134 (265)
Q Consensus 80 ~~A~e~AL~da~~qGls~~eaAk~Aqk~g~kAAKlA~rQAkRI~GPiissgWDfF 134 (265)
=.++-.|+..++.+|+++.||.+.|+.-..++-+.+.+.-+ =.||+-..+|--|
T Consensus 212 GD~f~aa~aa~l~~g~~l~eA~~~A~~~~~~~i~~~~~~g~-g~~~~~~~~~~~~ 265 (268)
T PRK12412 212 GCTYSAAITAELAKGKPVKEAVKTAKEFITAAIRYSFKINE-YVGPTHHGAYRKF 265 (268)
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHhccCC-CCCCcCccchhhc
Confidence 46788899999999999999999999988887776654333 3788877788654
No 5
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=66.94 E-value=9.8 Score=31.26 Aligned_cols=60 Identities=27% Similarity=0.308 Sum_probs=40.0
Q ss_pred hccHHHHHHHhccccccccCceeeeeeeccCCce--eeee----eecceEEEEeechhHHHHHHHHHHHH
Q 024641 21 SLTAEKCRQLVGEDASSQSGKFTILNCFDMGSGT--VACG----VKEGVKLYFYNIRAAHVERARNVAIE 84 (265)
Q Consensus 21 S~tAEK~R~LVGee~sSkSGkFT~~nCFDmgsGt--lACa----vKEGVKLY~ynIRs~hvE~~R~~A~e 84 (265)
.||.++-|.+.=....-+.| ..+.|+|||| +++. ...+-++|..-+....++.+|+.+-+
T Consensus 22 ~~t~~~~r~~~l~~l~~~~~----~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~ 87 (198)
T PRK00377 22 PMTKEEIRALALSKLRLRKG----DMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEK 87 (198)
T ss_pred CCCHHHHHHHHHHHcCCCCc----CEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH
Confidence 47888888775222222223 3689999977 4442 23456899999999988888877644
No 6
>PRK13699 putative methylase; Provisional
Probab=64.63 E-value=5.1 Score=34.79 Aligned_cols=47 Identities=13% Similarity=0.234 Sum_probs=37.5
Q ss_pred ccccccCceeeeeeeccCCceeeeee-ecceEEEEeechhHHHHHHHHHH
Q 024641 34 DASSQSGKFTILNCFDMGSGTVACGV-KEGVKLYFYNIRAAHVERARNVA 82 (265)
Q Consensus 34 e~sSkSGkFT~~nCFDmgsGtlACav-KEGVKLY~ynIRs~hvE~~R~~A 82 (265)
+.+|+.|. +++++| |||||.+-++ +.|-+-+-..|-...++.+++|.
T Consensus 158 ~~~s~~g~-~vlDpf-~Gsgtt~~aa~~~~r~~~g~e~~~~y~~~~~~r~ 205 (227)
T PRK13699 158 ESFTHPNA-IVLDPF-AGSGSTCVAALQSGRRYIGIELLEQYHRAGQQRL 205 (227)
T ss_pred HHhCCCCC-EEEeCC-CCCCHHHHHHHHcCCCEEEEecCHHHHHHHHHHH
Confidence 35666665 799999 8999877664 45888889999999999888884
No 7
>PRK10974 glycerol-3-phosphate transporter periplasmic binding protein; Provisional
Probab=64.30 E-value=17 Score=32.74 Aligned_cols=37 Identities=8% Similarity=0.171 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHH
Q 024641 81 VAIEKAVVDALSQGLSSNDAAKQAQKEGAKAAKLAKR 117 (265)
Q Consensus 81 ~A~e~AL~da~~qGls~~eaAk~Aqk~g~kAAKlA~r 117 (265)
.++..+|.+++....+++||.++|+++.....+...|
T Consensus 399 ~~~~~~~~~~~~g~~t~~eal~~a~~~~~~~l~~~~~ 435 (438)
T PRK10974 399 TIVDEELESVWTGKKTPQQALDSAVERGNQLLRRFEK 435 (438)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 4778888888888899999999999998888775443
No 8
>PF03032 Brevenin: Brevenin/esculentin/gaegurin/rugosin family; InterPro: IPR004275 In addition to the highly specific cell-mediated immune system, vertebrates possess an efficient host-defence mechanism against invading microorganisms which involves the synthesis of highly potent antimicrobial peptides with a large spectrum of activity. This entry represents a number of these defence peptides secreted from the skin of amphibians, including the opiate-like dermorphins and deltorphins, and the antimicrobial dermoseptins and temporins.; GO: 0006952 defense response, 0042742 defense response to bacterium, 0005576 extracellular region
Probab=62.76 E-value=5.2 Score=28.59 Aligned_cols=22 Identities=45% Similarity=0.706 Sum_probs=18.3
Q ss_pred hhHHHHHHHHHHHHhhccHHHH
Q 024641 6 KRVQFLLFVIGIIALSLTAEKC 27 (265)
Q Consensus 6 rrvq~llfi~~iiaLS~tAEK~ 27 (265)
+...+|+|.+|+|-||+--++=
T Consensus 4 KKsllLlfflG~ISlSlCeeEr 25 (46)
T PF03032_consen 4 KKSLLLLFFLGTISLSLCEEER 25 (46)
T ss_pred hHHHHHHHHHHHcccchHHHhc
Confidence 5678999999999999986643
No 9
>PRK09355 hydroxyethylthiazole kinase; Validated
Probab=61.11 E-value=23 Score=31.02 Aligned_cols=55 Identities=22% Similarity=0.222 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhcchhhhhhhh
Q 024641 81 VAIEKAVVDALSQGLSSNDAAKQAQKEGAKAAKLAKRQAKRIIGPIIAAGWDFFEAIY 138 (265)
Q Consensus 81 ~A~e~AL~da~~qGls~~eaAk~Aqk~g~kAAKlA~rQAkRI~GPiissgWDfFEalY 138 (265)
-.+-.++.-.+.+|.++.+|+..|+.--..|+.+|.++... || -|---+++..||
T Consensus 193 c~L~~~iaa~lA~g~~~~~A~~~A~~~~~~a~~~a~~~~~~--g~-gsf~~~l~d~l~ 247 (263)
T PRK09355 193 CLLSAVVAAFAAVEKDYLEAAAAACAVYGIAGELAAERSEK--GP-GSFQPAFLDALY 247 (263)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcCCC--CC-hHHHHHHHHHHh
Confidence 35667888889999999999999999999999998876432 77 355567787777
No 10
>TIGR00097 HMP-P_kinase phosphomethylpyrimidine kinase. This model represents phosphomethylpyrimidine kinase, the ThiD protein of thiamine biosynthesis. The protein is commonly observed within operons containing other thiamine biosynthesis genes. Numerous examples are fusion proteins with other thiamine-biosynthetic domains. Saccaromyces has three recent paralogs, two of which are isofunctional and score above the trusted cutoff. The third shows a longer branch length in a phylogenetic tree and scores below the trusted cutoff, as do putative second copies in a number of species.
Probab=59.13 E-value=20 Score=30.54 Aligned_cols=45 Identities=24% Similarity=0.370 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhhhhcch
Q 024641 81 VAIEKAVVDALSQGLSSNDAAKQAQKEGAKAAKLAKRQAKRIIGPI 126 (265)
Q Consensus 81 ~A~e~AL~da~~qGls~~eaAk~Aqk~g~kAAKlA~rQAkRI~GPi 126 (265)
.+.-.|+..++.+|+++.||.+.|+.-..++-+.+.+.-+. .||+
T Consensus 207 D~f~aalaa~la~g~~l~eA~~~A~~~~~~~i~~~~~~~~~-~~~~ 251 (254)
T TIGR00097 207 CTLSAAIAANLAKGLSLKEAVKEAKEFVTGAIRYGLNIGHG-HGPL 251 (254)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHhhcCCCC-CCCC
Confidence 67888999999999999999999999888887766543222 4554
No 11
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=58.22 E-value=31 Score=29.90 Aligned_cols=46 Identities=20% Similarity=0.356 Sum_probs=31.9
Q ss_pred eeeccCCceeeeee-ecceEEEEeechhHHHHHHHHHHHHHHHHHHHhcCCChHH
Q 024641 46 NCFDMGSGTVACGV-KEGVKLYFYNIRAAHVERARNVAIEKAVVDALSQGLSSND 99 (265)
Q Consensus 46 nCFDmgsGtlACav-KEGVKLY~ynIRs~hvE~~R~~A~e~AL~da~~qGls~~e 99 (265)
-.+|+|.||..+++ +.|.-+|..+|+.. -.-+.+++.+.+. ++..+
T Consensus 111 ~vvDiGggtt~i~i~~~G~i~~~~~~~~G------G~~it~~Ia~~~~--i~~~~ 157 (239)
T TIGR02529 111 AVVDVGGGTTGISILKKGKVIYSADEPTG------GTHMSLVLAGAYG--ISFEE 157 (239)
T ss_pred EEEEeCCCcEEEEEEECCeEEEEEeeecc------hHHHHHHHHHHhC--CCHHH
Confidence 47999999987655 88888887777655 3345666766664 44443
No 12
>PRK06427 bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed
Probab=54.63 E-value=28 Score=29.50 Aligned_cols=40 Identities=23% Similarity=0.253 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHh
Q 024641 80 NVAIEKAVVDALSQGLSSNDAAKQAQKEGAKAAKLAKRQA 119 (265)
Q Consensus 80 ~~A~e~AL~da~~qGls~~eaAk~Aqk~g~kAAKlA~rQA 119 (265)
=.+.-.++..++.+|+++.||++.|+.-..++.+.+.+..
T Consensus 214 GD~f~a~l~~~l~~g~~l~~A~~~A~~~~~~~i~~~~~~~ 253 (266)
T PRK06427 214 GCTLSAAIAAELAKGASLLDAVQTAKDYVTRAIRHALEIG 253 (266)
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHhccC
Confidence 3788889999999999999999999999888888775433
No 13
>PF12637 TSCPD: TSCPD domain; InterPro: IPR024434 The domain is found in isolation in many proteins where it has a conserved C-terminal motif TSCPD, after which the domain is named. Most copies of the domain possess 4 conserved cysteines that may be part of an Iron-sulphur cluster. This domain is found at the C terminus of some ribonucleoside-diphosphate reductase enzymes.
Probab=54.46 E-value=41 Score=26.03 Aligned_cols=55 Identities=18% Similarity=0.227 Sum_probs=41.7
Q ss_pred cCCceeeeeeecceE------EEEeechhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHH
Q 024641 50 MGSGTVACGVKEGVK------LYFYNIRAAHVERARNVAIEKAVVDALSQGLSSNDAAKQAQ 105 (265)
Q Consensus 50 mgsGtlACavKEGVK------LY~ynIRs~hvE~~R~~A~e~AL~da~~qGls~~eaAk~Aq 105 (265)
-+||++..++-+-.. ++++-=++-+- .+=-.|+.+.+.-++..|++++|..+|-.
T Consensus 5 ~~~g~~yvtv~~d~d~g~p~Evf~~~~~~Gg~-~~~~~ai~rliS~~Lr~G~~~~~ii~~L~ 65 (95)
T PF12637_consen 5 TGCGKLYVTVNFDEDNGRPFEVFINVGKAGGC-SGNLEAIARLISLALRSGVPPEEIIDQLR 65 (95)
T ss_pred ccccceEEEEEeeCCCCcceEEEEecCcCCCc-hHHHHHHHHHHHHHHHcCCCHHHHHHHhc
Confidence 367777777765544 77755555666 77889999999999999999999887643
No 14
>PF13356 DUF4102: Domain of unknown function (DUF4102); PDB: 3JU0_A 3RMP_A 3JTZ_A 2KJ8_A.
Probab=52.54 E-value=16 Score=26.97 Aligned_cols=52 Identities=23% Similarity=0.395 Sum_probs=34.0
Q ss_pred ccC-CceeeeeeecceEEEEeech--------------hHHHHHHHHHHHHHHHHHHHhcCCChHHHHHH
Q 024641 49 DMG-SGTVACGVKEGVKLYFYNIR--------------AAHVERARNVAIEKAVVDALSQGLSSNDAAKQ 103 (265)
Q Consensus 49 Dmg-sGtlACavKEGVKLY~ynIR--------------s~hvE~~R~~A~e~AL~da~~qGls~~eaAk~ 103 (265)
| + .|=..+.-+-|+|-|+|..| ..-+..||..|. .+.+.+.+|..|.+.-++
T Consensus 20 D-~~~GL~l~v~~~G~kt~~~r~~~~gk~~~~~lG~~p~~sl~~AR~~a~--~~~~~~~~G~dP~~~~~~ 86 (89)
T PF13356_consen 20 D-GVPGLYLRVTPSGSKTFYFRYRINGKRRRITLGRYPELSLAEAREKAR--ELRALVRQGIDPREEKKA 86 (89)
T ss_dssp E-ESTTEEEEE-TTS-EEEEEEEEETTEEEEEEEEECTTS-HHHHHHHHH--HHHHHHCTT--GGGS-GG
T ss_pred e-CCCCcEEEEEeCCCeEEEEEEEecceEEEeccCCCccCCHHHHHHHHH--HHHHHHHcCCCHHHHHHH
Confidence 5 6 45555556677898887765 557899999986 578889999999876443
No 15
>cd01171 YXKO-related B.subtilis YXKO protein of unknown function and related proteins. Based on the conservation of the ATP binding site, the substrate binding site and the Mg2+binding site and structural homology this group is a member of the ribokinase-like superfamily.
Probab=51.65 E-value=46 Score=28.05 Aligned_cols=67 Identities=24% Similarity=0.280 Sum_probs=45.4
Q ss_pred cCCceeeeeeecceEEEEeechhHHHH-HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHH
Q 024641 50 MGSGTVACGVKEGVKLYFYNIRAAHVE-RARNVAIEKAVVDALSQGLSSNDAAKQAQKEGAKAAKLAKRQ 118 (265)
Q Consensus 50 mgsGtlACavKEGVKLY~ynIRs~hvE-~~R~~A~e~AL~da~~qGls~~eaAk~Aqk~g~kAAKlA~rQ 118 (265)
.|.+++.+. +++ +.|+...+...+. .-==..+-.++.-.+.+|+++.||++.|.....+|+..+.+.
T Consensus 172 kG~~~~i~~-~~~-~~~~~~~~~~~~~~~GaGD~lag~iaa~la~g~~~~eA~~~A~~~~~~a~~~~~~~ 239 (254)
T cd01171 172 KGAVTVIAD-PDG-RVYVNPTGNPGLATGGSGDVLAGIIAALLAQGLSPLEAAALAVYLHGLAGDLAAKK 239 (254)
T ss_pred cCCCCEEEC-CCC-cEEEECCCCcccccCchHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777654 334 3565554443211 000245677788888899999999999999999998877654
No 16
>TIGR03851 chitin_NgcE carbohydrate ABC transporter, N-acetylglucosamine/diacetylchitobiose-binding protein. Members of this protein family are the substrate-binding protein, a lipid-anchored protein of Gram-positive bacteria in all examples found so far, that include NgcE of the chitin-degrader, Streptomyces olivaceoviridis, and close homologs from other species likely to share the same function. NgcE binds both N-acetylglucosamine and the chitin dimer, N,N'-diacetylchitobiose.
Probab=50.05 E-value=27 Score=31.52 Aligned_cols=34 Identities=18% Similarity=0.187 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Q 024641 80 NVAIEKAVVDALSQGLSSNDAAKQAQKEGAKAAK 113 (265)
Q Consensus 80 ~~A~e~AL~da~~qGls~~eaAk~Aqk~g~kAAK 113 (265)
..++..+|.+++...++++||++++|+...+..+
T Consensus 410 ~~~~~~~~~~~~~g~~t~~~al~~~~~~~~~~~~ 443 (450)
T TIGR03851 410 NKDQLVLTNEFMAGRITADEFCERMQKAADKIAK 443 (450)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhc
Confidence 3578889999998889999999999987666543
No 17
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=49.54 E-value=7.3 Score=35.04 Aligned_cols=34 Identities=26% Similarity=0.434 Sum_probs=25.3
Q ss_pred cCCceeeeeee----cceEEEEeechhHHHHHHHHHHH
Q 024641 50 MGSGTVACGVK----EGVKLYFYNIRAAHVERARNVAI 83 (265)
Q Consensus 50 mgsGtlACavK----EGVKLY~ynIRs~hvE~~R~~A~ 83 (265)
.|||+|+++.- ..=+||.|-+|.-|.+.||+..-
T Consensus 49 tGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~ 86 (247)
T PF08704_consen 49 TGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFE 86 (247)
T ss_dssp -TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHH
Confidence 57777776543 33399999999999999887743
No 18
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=47.78 E-value=45 Score=25.82 Aligned_cols=18 Identities=22% Similarity=0.387 Sum_probs=13.9
Q ss_pred eeccCCceeeeeeecceE
Q 024641 47 CFDMGSGTVACGVKEGVK 64 (265)
Q Consensus 47 CFDmgsGtlACavKEGVK 64 (265)
..|||+++..|++=+..+
T Consensus 3 ~iDiGs~~~~~~i~~~~~ 20 (120)
T PF14450_consen 3 VIDIGSSKTKVAIAEDGS 20 (120)
T ss_dssp EEEE-SSSEEEEEEETTE
T ss_pred EEEcCCCcEEEEEEEeCC
Confidence 579999999999877633
No 19
>PRK12616 pyridoxal kinase; Reviewed
Probab=47.49 E-value=43 Score=29.13 Aligned_cols=46 Identities=22% Similarity=0.224 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhhhhcch
Q 024641 80 NVAIEKAVVDALSQGLSSNDAAKQAQKEGAKAAKLAKRQAKRIIGPI 126 (265)
Q Consensus 80 ~~A~e~AL~da~~qGls~~eaAk~Aqk~g~kAAKlA~rQAkRI~GPi 126 (265)
=.+.-.++..++.+|+++.+|.+.|+.-..++-|.+.+.-+. .||+
T Consensus 215 GD~fsaalaa~l~~g~~l~~Av~~A~~~~~~~i~~s~~~g~~-~~~~ 260 (270)
T PRK12616 215 GCTFSAAVTAELAKGSEVKEAIYAAKEFITAAIKESFPLNQY-VGPT 260 (270)
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHhhcCCC-CCCh
Confidence 467888999999999999999999999988888877553332 5665
No 20
>TIGR00694 thiM hydroxyethylthiazole kinase. This model represents the hydoxyethylthiazole kinase, ThiM, of a number of bacteria, and C-terminal domains of bifunctional thiamine biosynthesis proteins of Saccharomyces cerevisiae and Schizosaccharomyces pombe, in which the N-terminal domain corresponds to the bacterial thiamine-phosphate pyrophosphorylase (EC 2.5.1.3), ThiE.
Probab=47.00 E-value=57 Score=28.40 Aligned_cols=53 Identities=23% Similarity=0.160 Sum_probs=41.3
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhcchhhhhhhh
Q 024641 82 AIEKAVVDALSQGLSSNDAAKQAQKEGAKAAKLAKRQAKRIIGPIIAAGWDFFEAIY 138 (265)
Q Consensus 82 A~e~AL~da~~qGls~~eaAk~Aqk~g~kAAKlA~rQAkRI~GPiissgWDfFEalY 138 (265)
.+-.++.-.+.+|.++.+|+..|+..-..|.+.|.++.. ||= +---|+++.||
T Consensus 189 ~LssaIaa~LA~g~~~~~A~~~A~~~~~~a~~~a~~~~~---g~g-~~~~~l~d~l~ 241 (249)
T TIGR00694 189 LLGSVVAAFCAVEEDPLDAAISACLLYKIAGELAAERSK---GPG-SFQIELLDALS 241 (249)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcCC---CCc-cHHHHHHHHHH
Confidence 566788888999999999999999999999998876643 452 23347777776
No 21
>PF05433 Rick_17kDa_Anti: Glycine zipper 2TM domain; InterPro: IPR008816 This domain includes a putative two transmembrane alpha-helical region that contains glycine zipper motifs []. The domain is found in several Rickettsia genus specific 17 kDa surface antigen proteins [].; GO: 0019867 outer membrane
Probab=46.88 E-value=1.4 Score=30.63 Aligned_cols=37 Identities=30% Similarity=0.510 Sum_probs=24.6
Q ss_pred ccccccccccccccccc----ccchhhhccccccccccceE
Q 024641 151 TGTLFGAYAGGFLGEER----LGRFGYLVGSHLGSWAGGRI 187 (265)
Q Consensus 151 tGTL~Gty~GGf~GE~R----lGr~GYLvGShlGSWvGgRI 187 (265)
.||+.|+.+|++.|-+- --.++=++|.-+|.++|.-|
T Consensus 1 ~G~~~Ga~~Ga~~G~~ig~~~g~~~g~~~Ga~~Ga~~G~~i 41 (42)
T PF05433_consen 1 IGALIGAAVGAVAGSQIGGGNGRTLGAVAGAVAGALIGNQI 41 (42)
T ss_pred CchHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHhhc
Confidence 47888888888877664 22356666666666666544
No 22
>PF05225 HTH_psq: helix-turn-helix, Psq domain; InterPro: IPR007889 This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster []. In pipsqueak this domain binds to GAGA sequence []. The pipsqueak family, which includes proteins from fungi, sea urchins, nematodes, insects, and vertebrates appear to be proteins essential for sequence-specific targeting of a polycomb group protein complex [].; GO: 0003677 DNA binding; PDB: 2COB_A.
Probab=45.13 E-value=34 Score=23.38 Aligned_cols=24 Identities=25% Similarity=0.279 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHH
Q 024641 80 NVAIEKAVVDALSQGLSSNDAAKQ 103 (265)
Q Consensus 80 ~~A~e~AL~da~~qGls~~eaAk~ 103 (265)
...|++||.+-...+||..+||+.
T Consensus 2 ee~l~~Ai~~v~~g~~S~r~AA~~ 25 (45)
T PF05225_consen 2 EEDLQKAIEAVKNGKMSIRKAAKK 25 (45)
T ss_dssp HHHHHHHHHHHHTTSS-HHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHH
Confidence 456889996655444999999875
No 23
>KOG1503 consensus Phosphoribosylpyrophosphate synthetase-associated protein [Amino acid transport and metabolism; Nucleotide transport and metabolism]
Probab=44.48 E-value=15 Score=35.32 Aligned_cols=22 Identities=32% Similarity=0.656 Sum_probs=18.9
Q ss_pred cccceEeeeeeeehhhHHHHHH
Q 024641 182 WAGGRIGLMIYDVVNGVHFLLQ 203 (265)
Q Consensus 182 WvGgRIGLM~YDV~ngv~~ll~ 203 (265)
=|||||+.|+=|+|.-++-+..
T Consensus 244 dvggriaimvddiiddvqsfva 265 (354)
T KOG1503|consen 244 DVGGRIAIMVDDIIDDVQSFVA 265 (354)
T ss_pred ccCceEEEEehhhHHhHHHHHH
Confidence 3799999999999999986554
No 24
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=43.61 E-value=64 Score=28.39 Aligned_cols=47 Identities=23% Similarity=0.410 Sum_probs=27.9
Q ss_pred eeeccCCceeeee-eecceEEEEeechhHHHHHHHHHHHHHHHHHHHhcCCChHHH
Q 024641 46 NCFDMGSGTVACG-VKEGVKLYFYNIRAAHVERARNVAIEKAVVDALSQGLSSNDA 100 (265)
Q Consensus 46 nCFDmgsGtlACa-vKEGVKLY~ynIRs~hvE~~R~~A~e~AL~da~~qGls~~ea 100 (265)
-++|||.||.-++ .++|--+|...+.-. -+-+.++|.+.+ +++.++|
T Consensus 138 ~vvDIGggtt~i~v~~~g~~~~~~~~~~G------G~~it~~Ia~~l--~i~~~eA 185 (267)
T PRK15080 138 AVVDIGGGTTGISILKDGKVVYSADEPTG------GTHMSLVLAGAY--GISFEEA 185 (267)
T ss_pred EEEEeCCCcEEEEEEECCeEEEEecccCc------hHHHHHHHHHHh--CCCHHHH
Confidence 4799999999664 477766665444332 233444555554 4555554
No 25
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=43.26 E-value=9.6 Score=27.26 Aligned_cols=36 Identities=28% Similarity=0.372 Sum_probs=28.3
Q ss_pred eeccCCceee---eeee--cceEEEEeechhHHHHHHHHHH
Q 024641 47 CFDMGSGTVA---CGVK--EGVKLYFYNIRAAHVERARNVA 82 (265)
Q Consensus 47 CFDmgsGtlA---CavK--EGVKLY~ynIRs~hvE~~R~~A 82 (265)
..|+|||+=. -..+ .+.++.-.-+....++.+|+++
T Consensus 5 vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~ 45 (112)
T PF12847_consen 5 VLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERA 45 (112)
T ss_dssp EEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHH
T ss_pred EEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHH
Confidence 4789998732 2244 7899999999999999999877
No 26
>TIGR03126 one_C_fae formaldehyde-activating enzyme. This family consists of formaldehyde-activating enzyme, or the corresponding domain of longer, bifunctional proteins. It links formaldehyde to the C1 carrier tetrahydromethanopterin (H4MPT), an analog of tetrahydrofolate, and is common among species with H4MPT. The ribulose monophosphate (RuMP) pathway, which removes the toxic metabolite formaldehyde by assimilation, runs in the opposite direction in some species to produce ribulose 5-phosphate for nucleotide biosynthesis, leaving formaldehyde as an additional metabolite. In these species, formaldehyde activating enzyme may occur as a fusion protein with D-arabino 3-hexulose 6-phosphate formaldehyde lyase from the RuMP pathway.
Probab=43.05 E-value=68 Score=28.38 Aligned_cols=42 Identities=33% Similarity=0.471 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHhcCCChHHHH------------------HHHHHHHHHHHHHHHHHh
Q 024641 78 ARNVAIEKAVVDALSQGLSSNDAA------------------KQAQKEGAKAAKLAKRQA 119 (265)
Q Consensus 78 ~R~~A~e~AL~da~~qGls~~eaA------------------k~Aqk~g~kAAKlA~rQA 119 (265)
.=|.|+-+|..|++.+|.=|+|.| +.-++---.|+|+|-+.|
T Consensus 80 paQ~avA~AVaD~V~eG~iP~~~addl~Iiv~Vfi~p~a~D~~kiy~~NY~ATKlAI~rA 139 (160)
T TIGR03126 80 PAQAAVAKAVADSVEEGIIPKDEADDLVIIVSVFIHPEAKDDRKIYKYNYEATKLAIKRA 139 (160)
T ss_pred HHHHHHHHHHHHHHHcCCCChhhhCcEEEEEEEEeccccccHHHHHHHHHHHHHHHHHHH
Confidence 358999999999999999888865 334455567888887765
No 27
>PHA03190 UL14 tegument protein; Provisional
Probab=41.84 E-value=87 Score=28.61 Aligned_cols=43 Identities=21% Similarity=0.297 Sum_probs=34.8
Q ss_pred EeechhHHHHHHHHHHHHHHHHHHHhcCCChHH--------HHHHHHHHHH
Q 024641 67 FYNIRAAHVERARNVAIEKAVVDALSQGLSSND--------AAKQAQKEGA 109 (265)
Q Consensus 67 ~ynIRs~hvE~~R~~A~e~AL~da~~qGls~~e--------aAk~Aqk~g~ 109 (265)
-.|-|+-.|+--|..++...-.|.+++|.++.+ +||+|....+
T Consensus 8 r~~ara~~~~y~r~~iyKaRtLdL~r~GV~~~dP~Fv~aFTsAKeA~~~~~ 58 (196)
T PHA03190 8 RIQARAEIMEYIKGQAYKAAVIEMMSAGVPPMHPAFRHAFAKAREHEAAAE 58 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHH
Confidence 357789999999999999999999999999876 4565554443
No 28
>PF08543 Phos_pyr_kin: Phosphomethylpyrimidine kinase; InterPro: IPR013749 This enzyme 2.7.4.7 from EC is part of the Thiamine pyrophosphate (TPP) synthesis pathway, TPP is an essential cofactor for many enzymes []. ; PDB: 2DDW_B 2DDO_B 2DDM_A 3IBQ_A 3H74_A 3HYO_A 1UB0_A 1VI9_D 1TD2_B 2PHP_D ....
Probab=41.32 E-value=70 Score=27.52 Aligned_cols=45 Identities=22% Similarity=0.224 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhhhhcch
Q 024641 81 VAIEKAVVDALSQGLSSNDAAKQAQKEGAKAAKLAKRQAKRIIGPI 126 (265)
Q Consensus 81 ~A~e~AL~da~~qGls~~eaAk~Aqk~g~kAAKlA~rQAkRI~GPi 126 (265)
...-.+|...+.+|+++.+|.++|+.--..+-+.+.+. -+-.||+
T Consensus 201 d~fss~laa~l~~g~~l~~Av~~A~~~v~~~i~~t~~~-g~~~~~~ 245 (246)
T PF08543_consen 201 DLFSSALAAFLAKGYSLEEAVEKAKNFVRRAIKNTIQL-GMGAGPV 245 (246)
T ss_dssp HHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHC-TSSS-B-
T ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcC-CCCCCCC
Confidence 57888999999999999999999999888888855543 3555664
No 29
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=39.67 E-value=30 Score=29.89 Aligned_cols=53 Identities=21% Similarity=0.334 Sum_probs=42.8
Q ss_pred ceeeeeeeccCCceeeeeeecceEEEEeechhHHHHHHHHHHHHHHHHHHHhcC
Q 024641 41 KFTILNCFDMGSGTVACGVKEGVKLYFYNIRAAHVERARNVAIEKAVVDALSQG 94 (265)
Q Consensus 41 kFT~~nCFDmgsGtlACavKEGVKLY~ynIRs~hvE~~R~~A~e~AL~da~~qG 94 (265)
|..|+-+=-||++-..+..+.|..+.+|++...-+++++.+. ++.|.+++.+|
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i-~~~l~~~~~~g 57 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATI-TKSLDRLVKKG 57 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHH-HHHHHHHHHcC
Confidence 455655556777777778888999999999999999888774 78888888888
No 30
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=37.14 E-value=1.6e+02 Score=26.51 Aligned_cols=103 Identities=17% Similarity=0.342 Sum_probs=52.6
Q ss_pred eeeeeccCC-ceeeeeeecceEEEEeechhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024641 44 ILNCFDMGS-GTVACGVKEGVKLYFYNIRAAHVERARNVAIEKAVVDALSQGLSSNDAAKQAQKEGAKAAKLAKRQAKRI 122 (265)
Q Consensus 44 ~~nCFDmgs-GtlACavKEGVKLY~ynIRs~hvE~~R~~A~e~AL~da~~qGls~~eaAk~Aqk~g~kAAKlA~rQAkRI 122 (265)
..-+.|+|. -|-.|..+.|.-+|.=+|.-. -.-+.+++++.+ +++..+|-+.=++ ............++.
T Consensus 181 ~~~lvdiG~~~t~~~i~~~g~~~f~R~i~~G------~~~l~~~i~~~~--~i~~~~Ae~~k~~-~~l~~~~~~~~l~~~ 251 (340)
T PF11104_consen 181 TVALVDIGASSTTVIIFQNGKPIFSRSIPIG------GNDLTEAIAREL--GIDFEEAEELKRS-GGLPEEYDQDALRPF 251 (340)
T ss_dssp EEEEEEE-SS-EEEEEEETTEEEEEEEES-S------HHHHHHHHHHHT--T--HHHHHHHHHH-T------HHHHHHHH
T ss_pred eEEEEEecCCeEEEEEEECCEEEEEEEEeeC------HHHHHHHHHHhc--CCCHHHHHHHHhc-CCCCcchHHHHHHHH
Confidence 445899998 567789999999999888665 344555555553 3555555322111 111111111222222
Q ss_pred hcch---hhcchhhhhhhhhcCccceeeeecccccc
Q 024641 123 IGPI---IAAGWDFFEAIYYGGTITEGFIRGTGTLF 155 (265)
Q Consensus 123 ~GPi---issgWDfFEalYyGGt~tEgflRGtGTL~ 155 (265)
+.++ |.--.|||..=+.+..+-.-+|=|-|-.+
T Consensus 252 ~~~l~~EI~rsl~~y~~~~~~~~i~~I~L~Ggga~l 287 (340)
T PF11104_consen 252 LEELAREIRRSLDFYQSQSGGESIERIYLSGGGARL 287 (340)
T ss_dssp HHHHHHHHHHHHHHHHHH------SEEEEESGGGGS
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCEEEEECCccch
Confidence 3333 33456999999888899988888876543
No 31
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=36.64 E-value=47 Score=26.32 Aligned_cols=26 Identities=19% Similarity=0.270 Sum_probs=14.0
Q ss_pred chhHHHHHHHHHHHHhhccHHHHHHH
Q 024641 5 KKRVQFLLFVIGIIALSLTAEKCRQL 30 (265)
Q Consensus 5 krrvq~llfi~~iiaLS~tAEK~R~L 30 (265)
+|.+.||..++++++|-..+..+|++
T Consensus 3 SK~~llL~l~LA~lLlisSevaa~~~ 28 (95)
T PF07172_consen 3 SKAFLLLGLLLAALLLISSEVAAREL 28 (95)
T ss_pred hhHHHHHHHHHHHHHHHHhhhhhHHh
Confidence 34444444444555555556666777
No 32
>PRK11524 putative methyltransferase; Provisional
Probab=35.95 E-value=23 Score=31.26 Aligned_cols=46 Identities=26% Similarity=0.236 Sum_probs=36.3
Q ss_pred cccccCceeeeeeeccCCceee-eeeecceEEEEeechhHHHHHHHHHH
Q 024641 35 ASSQSGKFTILNCFDMGSGTVA-CGVKEGVKLYFYNIRAAHVERARNVA 82 (265)
Q Consensus 35 ~sSkSGkFT~~nCFDmgsGtlA-CavKEGVKLY~ynIRs~hvE~~R~~A 82 (265)
.+|..| .++++|| |||||-+ .|.+.|=+-+-.-|-...++.|++|.
T Consensus 204 ~~S~~G-D~VLDPF-~GSGTT~~AA~~lgR~~IG~Ei~~~Y~~~a~~Rl 250 (284)
T PRK11524 204 ASSNPG-DIVLDPF-AGSFTTGAVAKASGRKFIGIEINSEYIKMGLRRL 250 (284)
T ss_pred HhCCCC-CEEEECC-CCCcHHHHHHHHcCCCEEEEeCCHHHHHHHHHHH
Confidence 445555 4699999 9999854 45677888888899999999999994
No 33
>cd07579 nitrilase_1_R2 Second nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). Members of this subgroup have two nitrilase domains. This is the second of those two domains. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=35.89 E-value=21 Score=31.28 Aligned_cols=30 Identities=17% Similarity=0.058 Sum_probs=20.7
Q ss_pred cCceeeeeeeccCCcee-eeeeecceEEEEe
Q 024641 39 SGKFTILNCFDMGSGTV-ACGVKEGVKLYFY 68 (265)
Q Consensus 39 SGkFT~~nCFDmgsGtl-ACavKEGVKLY~y 68 (265)
-||+.++-|+|+-.--+ ...++.|+.|.++
T Consensus 128 ~~kiG~~ICyD~~fPe~~r~~a~~Ga~ii~~ 158 (279)
T cd07579 128 LGRVGLLIGHDALFPEAGRVLALRGCDLLAC 158 (279)
T ss_pred ceeEEEEEeccccCcHHHHHHHHCCCCEEEE
Confidence 46777788888766655 3455778887776
No 34
>PTZ00247 adenosine kinase; Provisional
Probab=35.54 E-value=75 Score=28.08 Aligned_cols=46 Identities=9% Similarity=0.045 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhcchhhh
Q 024641 81 VAIEKAVVDALSQGLSSNDAAKQAQKEGAKAAKLAKRQAKRIIGPIIAAGWDFF 134 (265)
Q Consensus 81 ~A~e~AL~da~~qGls~~eaAk~Aqk~g~kAAKlA~rQAkRI~GPiissgWDfF 134 (265)
.+.-.++.-++.+|+++.||++.|...++.+.. -.|+.+...|+|.
T Consensus 298 DaF~agfl~~l~~g~~~~~al~~a~~aAa~~v~--------~~Ga~~~~~~~~~ 343 (345)
T PTZ00247 298 DAFVGGFLAQYANGKDIDRCVEAGHYSAQVIIQ--------HNGCTYPEKPPFL 343 (345)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHh--------ccCCCCCCCCCCC
Confidence 578889999999999999999988766554432 2588888888764
No 35
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=34.87 E-value=81 Score=28.46 Aligned_cols=26 Identities=27% Similarity=0.344 Sum_probs=18.8
Q ss_pred eeeeccCCceeeee-eecceEEEEeec
Q 024641 45 LNCFDMGSGTVACG-VKEGVKLYFYNI 70 (265)
Q Consensus 45 ~nCFDmgsGtlACa-vKEGVKLY~ynI 70 (265)
.-++|||.||.-.+ .++|.-+|.-.|
T Consensus 198 ~~vvDiG~gtt~i~i~~~g~~~~~~~i 224 (371)
T TIGR01174 198 VCLIDIGGGTTDIAVYTGGSIRYTKVI 224 (371)
T ss_pred EEEEEeCCCcEEEEEEECCEEEEEeee
Confidence 35899999998764 578876664444
No 36
>TIGR01748 rhaA L-rhamnose isomerase. This enzyme interconverts L-rhamnose and L-rhamnulose. In some species, including E. coli, this is the first step in rhamnose catabolism. Sequential steps are catalyzed by rhamnulose kinase (rhaB), then rhamnulose-1-phosphate aldolase (rhaD) to yield glycerone phosphate and (S)-lactaldehyde. Characterization of this family is based on members in E. coli and Salmonella.
Probab=33.57 E-value=69 Score=31.94 Aligned_cols=56 Identities=30% Similarity=0.499 Sum_probs=40.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhcchhhh
Q 024641 72 AAHVERARNVAIEKAVVDALSQGLSSNDAAKQAQKEGAKAAKLAKRQAKRIIGPIIAAGWDFF 134 (265)
Q Consensus 72 s~hvE~~R~~A~e~AL~da~~qGls~~eaAk~Aqk~g~kAAKlA~rQAkRI~GPiissgWDfF 134 (265)
++-|--+ |++++||..|+ |-|.++-|+||.+++--.++|...--+-+ | +.+.||-|
T Consensus 332 ~A~vig~--rn~qkAll~AL---L~p~~~L~~~q~~gD~~~rla~~ee~k~~-p-~gavw~~~ 387 (414)
T TIGR01748 332 AAWVIGT--RNMKKALLRAL---LEPTAELKKLEAEGDYTARLALLEEQKSL-P-FGAVWEMY 387 (414)
T ss_pred HHHHHHH--HHHHHHHHHHH---cCCHHHHHHHHHcCCHHHHHHHHHHHhcC-C-hHHHHHHH
Confidence 3444444 45788888887 67999999999999999999976543332 2 56778865
No 37
>PF01404 Ephrin_lbd: Ephrin receptor ligand binding domain; InterPro: IPR001090 Interactions between the Eph receptor tyrosine kinases and their membrane-bound ligands, ephrins are promiscuous, but largely fall into two groups: EphA receptors bind to GPI-anchored ephrin-A ligands, while EphB receptors bind to ephrin-B proteins that have a transmembrane and cytoplasmic domain []. Remarkably, ephrin-B proteins transduce signals, such that bidirectional signalling can occur upon interaction with Eph receptor. An important role of Eph receptors and ephrins is to mediate cell-contact-dependent repulsion. Eph receptors and ephrins also act at boundaries to channel neuronal growth cones along specific pathways, restrict the migration of neural crest cells, and via bidirectional signalling prevent intermingling between hindbrain segments. Intriguingly, Eph receptors and ephrins can also trigger an adhesive response of endothelial cells and are required for the remodelling of blood vessels []. Biochemical studies suggest that the extent of multimerisation of Eph receptors modulates the cellular response and that the actin cytoskeleton is one major target of the intracellular pathways activated by Eph receptors []. Eph receptors and ephrins have thus emerged as key regulators of the repulsion and adhesion of cells that underlie the establishment, maintenance, and remodelling of patterns of cellular organisation [].; GO: 0005003 ephrin receptor activity, 0005524 ATP binding, 0016020 membrane; PDB: 2BBA_A 2HLE_A 3NRU_L 1SHW_B 1KGY_A 3ETP_A 1NUK_A 2WO2_A 3CKH_A 2WO3_A ....
Probab=33.48 E-value=26 Score=30.62 Aligned_cols=27 Identities=37% Similarity=0.785 Sum_probs=23.2
Q ss_pred ceeeeeeeccCCceeeeeeecceEEEEee
Q 024641 41 KFTILNCFDMGSGTVACGVKEGVKLYFYN 69 (265)
Q Consensus 41 kFT~~nCFDmgsGtlACavKEGVKLY~yn 69 (265)
+||+.+|-++..+...| ||=-.||.|.
T Consensus 72 ~Ft~rdC~s~~~~~~sC--kETFnLyy~e 98 (178)
T PF01404_consen 72 KFTMRDCSSFPGVAGSC--KETFNLYYYE 98 (178)
T ss_dssp EEEEB-GGGSTTSTTTS--BSEEEEEEEE
T ss_pred EEEehhcccCCCCCCcc--cceeeeeeee
Confidence 79999999999888877 8999999885
No 38
>KOG2779 consensus N-myristoyl transferase [Lipid transport and metabolism]
Probab=33.39 E-value=21 Score=35.44 Aligned_cols=42 Identities=29% Similarity=0.602 Sum_probs=32.6
Q ss_pred HHHHHHHhccc-cccccCceeeeeeecc--------------CCceeeeeeecceEEEEeechhH
Q 024641 24 AEKCRQLVGED-ASSQSGKFTILNCFDM--------------GSGTVACGVKEGVKLYFYNIRAA 73 (265)
Q Consensus 24 AEK~R~LVGee-~sSkSGkFT~~nCFDm--------------gsGtlACavKEGVKLY~ynIRs~ 73 (265)
...+-|||++- ..+|.-.|+++||.|| |+|.| .-|.||-|+.
T Consensus 353 ~t~~~~lvnDalilak~~gfDVFNAld~meN~~fl~~LkFg~GdG~l--------~YYLYNwr~~ 409 (421)
T KOG2779|consen 353 STPLLQLVNDALILAKQKGFDVFNALDLMENESFLKDLKFGPGDGNL--------QYYLYNWRCP 409 (421)
T ss_pred CccHHHHHHHHHHHHHhcCCceeehhhhhhhhhHHHhcCcCcCCCce--------eEEEEeccCC
Confidence 34567777764 5678889999999997 56655 5799999987
No 39
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=33.04 E-value=30 Score=28.04 Aligned_cols=39 Identities=31% Similarity=0.347 Sum_probs=28.9
Q ss_pred eeeeccCCceee---eeeecceEEEEeechhHHHHHHHHHHH
Q 024641 45 LNCFDMGSGTVA---CGVKEGVKLYFYNIRAAHVERARNVAI 83 (265)
Q Consensus 45 ~nCFDmgsGtlA---CavKEGVKLY~ynIRs~hvE~~R~~A~ 83 (265)
.+.+|+|||+=. +..+.+.+++..-+-...++.+|++.-
T Consensus 65 ~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~ 106 (230)
T PRK07580 65 LRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAP 106 (230)
T ss_pred CEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHH
Confidence 367999999732 334667788888888888888887654
No 40
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=32.96 E-value=78 Score=31.01 Aligned_cols=44 Identities=23% Similarity=0.199 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhh
Q 024641 77 RARNVAIEKAVVDALSQGLSSNDAAKQAQKEGAKAAKLAKRQAK 120 (265)
Q Consensus 77 ~~R~~A~e~AL~da~~qGls~~eaAk~Aqk~g~kAAKlA~rQAk 120 (265)
+.|...+..|++-|-..-.+.+|++|.|||.-+||.|-|.+.|.
T Consensus 269 k~kae~ea~a~asa~a~kkkaKE~~kka~k~~Kk~ikna~kd~~ 312 (379)
T COG5269 269 KNKAEIEAEALASATAVKKKAKEVMKKALKMEKKAIKNAAKDAD 312 (379)
T ss_pred HhHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 44555566788888888889999999999999999998887654
No 41
>TIGR01231 lacC tagatose-6-phosphate kinase. This enzyme is part of the tagatose-6-phosphate pathway of lactose degradation.
Probab=32.53 E-value=92 Score=26.83 Aligned_cols=33 Identities=24% Similarity=0.193 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Q 024641 81 VAIEKAVVDALSQGLSSNDAAKQAQKEGAKAAK 113 (265)
Q Consensus 81 ~A~e~AL~da~~qGls~~eaAk~Aqk~g~kAAK 113 (265)
.+.-.++..++.+|+++.|+.+.|...++.++.
T Consensus 253 DaF~agfl~~l~~g~~~~~a~~~a~a~aa~~~~ 285 (309)
T TIGR01231 253 DSTVAGITSALLNHESDHDLLKKANTLGMLNAQ 285 (309)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc
Confidence 688899999999999999999999998888773
No 42
>PF00288 GHMP_kinases_N: GHMP kinases N terminal domain; InterPro: IPR006204 The galacto- (2.7.1.6 from EC), homoserine (2.7.1.39 from EC), mevalonate (2.7.1.36 from EC) and phosphomevalonate (2.7.4.2 from EC) kinases contain, in their N-terminal section, a conserved Gly/Ser-rich region which is probably involved in the binding of ATP [, ]. This group of kinases has been called 'GHMP' (from the first letter of their substrates).; GO: 0005524 ATP binding, 0016301 kinase activity, 0016310 phosphorylation; PDB: 3F0N_B 1PIE_A 2AJ4_A 1K47_E 3GON_A 2R3V_C 3HUL_A 1KVK_A 2R42_A 3D4J_A ....
Probab=32.34 E-value=96 Score=21.48 Aligned_cols=46 Identities=39% Similarity=0.450 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhcchhhhhhhhhcC
Q 024641 81 VAIEKAVVDALSQGLSSNDAAKQAQKEGAKAAKLAKRQAKRIIGPIIAAGWDFFEAIYYGG 141 (265)
Q Consensus 81 ~A~e~AL~da~~qGls~~eaAk~Aqk~g~kAAKlA~rQAkRI~GPiissgWDfFEalYyGG 141 (265)
-|+-.||.+.....+++.|-++.|+ ++.+.+ .. .+|.|- =+.+|||
T Consensus 22 ~a~~~a~~~~~~~~~~~~~l~~~a~------------~~e~~~-g~-~~g~d~-~~~~~GG 67 (67)
T PF00288_consen 22 VALAAALNKLFGLPLSKEELAKLAQ------------EAERYI-GK-PSGIDD-AASAYGG 67 (67)
T ss_dssp HHHHHHHHHHTTTSSBHHHHHHHHH------------HHHHHC-SS-SHSHHH-HHHHHCS
T ss_pred HHHHHHHHHHccccccHHHHHHHHH------------HHHHHc-CC-CChhhH-HHHHhCc
Confidence 4566778888877777766644433 445555 33 389998 6778887
No 43
>PRK01076 L-rhamnose isomerase; Provisional
Probab=31.81 E-value=76 Score=31.68 Aligned_cols=56 Identities=32% Similarity=0.510 Sum_probs=40.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhcchhhh
Q 024641 72 AAHVERARNVAIEKAVVDALSQGLSSNDAAKQAQKEGAKAAKLAKRQAKRIIGPIIAAGWDFF 134 (265)
Q Consensus 72 s~hvE~~R~~A~e~AL~da~~qGls~~eaAk~Aqk~g~kAAKlA~rQAkRI~GPiissgWDfF 134 (265)
++-|--+ |++++||..|+ |-|.++-|+||.+++--.++|...--+-+ | +.+.||-|
T Consensus 336 ~A~v~g~--rn~qkAll~AL---L~p~~~L~~~q~~gD~~~rla~~ee~k~~-p-~g~vwd~~ 391 (419)
T PRK01076 336 AAWVIGT--RNMKKALLRAL---LEPTDQLRKLELEGDYTARLALLEEQKSL-P-WGAVWDMY 391 (419)
T ss_pred HHHHHHH--HHHHHHHHHHH---cCCHHHHHHHHHcCCHHHHHHHHHHHhcC-C-hHHHHHHH
Confidence 3444444 45788888887 67999999999999999999876433322 2 56778865
No 44
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=31.29 E-value=55 Score=26.42 Aligned_cols=57 Identities=18% Similarity=0.241 Sum_probs=33.6
Q ss_pred ccHHHHHHHhccccccccCceeeeeeeccCCce--eeeee-ec--ceEEEEeechhHHHHHHHHHH
Q 024641 22 LTAEKCRQLVGEDASSQSGKFTILNCFDMGSGT--VACGV-KE--GVKLYFYNIRAAHVERARNVA 82 (265)
Q Consensus 22 ~tAEK~R~LVGee~sSkSGkFT~~nCFDmgsGt--lACav-KE--GVKLY~ynIRs~hvE~~R~~A 82 (265)
+|.+..|+++=+..--..++ .+.|+|||| +++.. +. ..+++..-+-...++.+|+.+
T Consensus 14 ~~~~~~r~~~~~~l~~~~~~----~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~ 75 (187)
T PRK08287 14 MTKEEVRALALSKLELHRAK----HLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENR 75 (187)
T ss_pred CchHHHHHHHHHhcCCCCCC----EEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH
Confidence 67777776553322222232 578999976 44322 22 357888888776677666544
No 45
>PF08714 Fae: Formaldehyde-activating enzyme (Fae); InterPro: IPR014826 This family consists of formaldehyde-activating enzyme, or the corresponding domain of longer, bifunctional proteins. It links formaldehyde to the C1 carrier tetrahydromethanopterin (H4MPT), an analog of tetrahydrofolate, and is common among species with H4MPT []. The ribulose monophosphate (RuMP) pathway, which removes the toxic metabolite formaldehyde by assimilation, runs in the opposite direction in some species to produce ribulose 5-phosphate for nucleotide biosynthesis, leaving formaldehyde as an additional metabolite. In these species, formaldehyde activating enzyme may occur as a fusion protein with D-arabino 3-hexulose 6-phosphate formaldehyde lyase from the RuMP pathway.; GO: 0016840 carbon-nitrogen lyase activity, 0016051 carbohydrate biosynthetic process; PDB: 1Y60_A 1Y5Y_D.
Probab=31.05 E-value=90 Score=27.58 Aligned_cols=41 Identities=37% Similarity=0.490 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHhcCCChHHHH------------------HHHHHHHHHHHHHHHHHh
Q 024641 79 RNVAIEKAVVDALSQGLSSNDAA------------------KQAQKEGAKAAKLAKRQA 119 (265)
Q Consensus 79 R~~A~e~AL~da~~qGls~~eaA------------------k~Aqk~g~kAAKlA~rQA 119 (265)
=|.|+-+|.+|++.+|.=|+|.+ +.-++---.|+|+|-+.|
T Consensus 79 aQaavA~AVaD~V~eG~iP~~~a~dl~Iiv~Vfi~p~a~D~~kiy~~NY~AtklAI~rA 137 (159)
T PF08714_consen 79 AQAAVAKAVADAVEEGIIPKDEADDLVIIVSVFIHPDALDDKKIYRYNYEATKLAIKRA 137 (159)
T ss_dssp HHHHHHHHHHHHHHTTSS-TTTGGGEEEEEEEE--TT---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCChhhcCcEEEEEEEEeCccccCHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999887754 344555567888887665
No 46
>PF05298 Bombinin: Bombinin; InterPro: IPR007962 This family consists of Bombinin and Maximin proteins from Bombina maxima (Giant fire-bellied toad). Two groups of antimicrobial peptides have been isolated from skin secretions of B. maxima. Peptides in the first group, named maximins 1, 2, 3, 4 and 5, are structurally related to bombinin-like peptides (BLPs). Unlike BLPs, sequence variations in maximins occurred all through the molecules. In addition to the potent antimicrobial activity, cytotoxicity against tumour cells and spermicidal action of maximins, maximin 3 possessed a significant anti-Simian-Human immunodeficiency virus (HIV) activity. Maximins 1 and 3 have been found to be toxic to mice. Peptides in the second group, termed maximins H1, H2, H3 and H4, are homologous with bombinin H peptides [].; GO: 0042742 defense response to bacterium, 0005576 extracellular region; PDB: 2AP7_A.
Probab=31.02 E-value=16 Score=31.45 Aligned_cols=72 Identities=22% Similarity=0.318 Sum_probs=4.0
Q ss_pred eeeeeeecceEEEEeechhH--HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHH--HHHHHHHHHHHHhhhhhcchhhc
Q 024641 54 TVACGVKEGVKLYFYNIRAA--HVERARNVAIEKAVVDALSQGLSSNDAAKQAQK--EGAKAAKLAKRQAKRIIGPIIAA 129 (265)
Q Consensus 54 tlACavKEGVKLY~ynIRs~--hvE~~R~~A~e~AL~da~~qGls~~eaAk~Aqk--~g~kAAKlA~rQAkRI~GPiiss 129 (265)
.+-|+.|+=..-|.+--|++ |--+-|-.|+-+-|... -.|+||...--+ --..-|.+-.++-|||+||+++-
T Consensus 56 a~kg~~k~la~~~~~gkRtAedhEvmKRleavmrdldsl----d~peEasEretrgfnqeeianlftkkekrilgpvl~~ 131 (141)
T PF05298_consen 56 ALKGAAKELASTYANGKRTAEDHEVMKRLEAVMRDLDSL----DHPEEASERETRGFNQEEIANLFTKKEKRILGPVLGL 131 (141)
T ss_dssp ---------------------------------------------------------------------------HHHHH
T ss_pred HHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhhhcc----cChHHHHHHHhcCCChhhhhhhhhhhhhhhhhhHHHH
Confidence 35677888778899998987 43444444443333211 235555433211 01234567777889999999874
No 47
>PF11991 Trp_DMAT: Tryptophan dimethylallyltransferase; InterPro: IPR017795 Proteins in this entry are mostly fungal enzymes involved in secondary metabolite production. Characterised or partially characterised members include several examples of dimethylallyltryptophan synthase, a brevianamide F prenyltransferase, LtxC from lyngbyatoxin biosynthesis, and a probable dimethylallyl tyrosine synthase [, ]. Tryptophan dimethylallyltransferase (2.5.1.34 from EC) catalyses the first step of ergot alkaloid biosynthesis. Ergot alkaloids, which are produced by endophyte fungi, can enhance plant host fitness, but also cause livestock toxicosis to host plants.; GO: 0050364 tryptophan dimethylallyltransferase activity, 0009820 alkaloid metabolic process; PDB: 4E0T_A 4E0U_B 3O2K_A 3O24_A 3I4X_A 3I4Z_A.
Probab=30.91 E-value=2.4e+02 Score=26.00 Aligned_cols=70 Identities=26% Similarity=0.300 Sum_probs=44.4
Q ss_pred HhhccHHHHHHHhccccccccCceeeeeeeccC-CceeeeeeecceEEEEeechhHHHHH-HHHHHHHHHHHHHHhcC
Q 024641 19 ALSLTAEKCRQLVGEDASSQSGKFTILNCFDMG-SGTVACGVKEGVKLYFYNIRAAHVER-ARNVAIEKAVVDALSQG 94 (265)
Q Consensus 19 aLS~tAEK~R~LVGee~sSkSGkFT~~nCFDmg-sGtlACavKEGVKLY~ynIRs~hvE~-~R~~A~e~AL~da~~qG 94 (265)
.|.++.++.+.+..+..-.+..+.+++-.||+. .|.+ .+|.|+|=...+.+.. .....+.+|+...-..|
T Consensus 128 ~l~~~~~e~~~~~~~~~~~~~~~s~~~lafdl~~~~~i------~~K~Yf~P~~k~~~tg~~~~~l~~~air~l~~~~ 199 (361)
T PF11991_consen 128 ALFLTDEEERSLAEKLPPGQPRRSQAFLAFDLKPGGGI------TLKAYFYPQAKALATGQSPHELVFDAIRRLDPFG 199 (361)
T ss_dssp HHS--HHHHHHHHHCGGGCCS----EEEEEEEETTTEE------EEEEEE-THHHHHHHT--HHHHHHHHHHHHHCC-
T ss_pred HhcCCHHHHHHHHhhcccccccccceeEEEEecCCCcc------eeeEEecccccccccCCCHHHHHHHHHHhhcccC
Confidence 788888988888877777768888999999998 6653 5799998665554443 45666666666655554
No 48
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=30.78 E-value=1.2e+02 Score=28.35 Aligned_cols=117 Identities=17% Similarity=0.228 Sum_probs=63.7
Q ss_pred HHHHHHHhccccccccCceeeeeeeccCCceeeeeeecceEEEEeec----------hhHHH------HHHHH-----HH
Q 024641 24 AEKCRQLVGEDASSQSGKFTILNCFDMGSGTVACGVKEGVKLYFYNI----------RAAHV------ERARN-----VA 82 (265)
Q Consensus 24 AEK~R~LVGee~sSkSGkFT~~nCFDmgsGtlACavKEGVKLY~ynI----------Rs~hv------E~~R~-----~A 82 (265)
+.+..+..|++.. +-.++ |.=+|+|.=.|+++.|--+-..|= |+.|+ ...+. ..
T Consensus 160 ~~~~~~~~g~~~~----~~~~I-~~hLGtGig~~ai~~Gk~vdgs~G~agEg~~~~tr~G~id~~~~~~~~~~~~~s~~e 234 (351)
T TIGR02707 160 ARRIAKELGKRYE----EMNLI-VAHMGGGISVAAHRKGRVIDVNNALDGEGPFSPERSGTLPLGDLVDLCYSGKYTKEE 234 (351)
T ss_pred HHHHHHHcCCCcc----cCCEE-EEEeCCCceeeeEECCEEEEcCCCCCCcCCcccCccCCCCchhHHHHHhcCCCCHHH
Confidence 5666777887544 22333 446999999999999976544442 45443 11111 01
Q ss_pred HHHHHHH-----HHhcCCChHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhcchhhh----hhhhhcCcccee
Q 024641 83 IEKAVVD-----ALSQGLSSNDAAKQAQKEGAKAAKLAKRQAKRIIGPIIAAGWDFF----EAIYYGGTITEG 146 (265)
Q Consensus 83 ~e~AL~d-----a~~qGls~~eaAk~Aqk~g~kAAKlA~rQAkRI~GPiissgWDfF----EalYyGGt~tEg 146 (265)
+.+.|+. .++.-.++.|.. ++.+++++.|+++-.+.=+-++=-|++-.-.+ |++.+||.+.|.
T Consensus 235 l~~~l~~~sGl~~~~gs~d~reI~-~~a~~GD~~A~~a~d~~~~~la~~Ia~l~~~l~g~pD~IV~gGGI~e~ 306 (351)
T TIGR02707 235 MKKKIVGNGGLVAYLGTNDAREVE-KRIEAGDEKAKLILDAMAYQIAKEIGKMAVVLKGKVDAIVLTGGLAYS 306 (351)
T ss_pred HHHHHHhccCcccccCCCCHHHHH-HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEcchhhcC
Confidence 1111111 011112444443 34445677777766655554554444444444 899999988764
No 49
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=30.52 E-value=3.1e+02 Score=24.16 Aligned_cols=113 Identities=19% Similarity=0.296 Sum_probs=55.8
Q ss_pred HHhcccccccc-CceeeeeeeccCCceeeee-eecceEEEEeechhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHH
Q 024641 29 QLVGEDASSQS-GKFTILNCFDMGSGTVACG-VKEGVKLYFYNIRAAHVERARNVAIEKAVVDALSQGLSSNDAAKQAQK 106 (265)
Q Consensus 29 ~LVGee~sSkS-GkFT~~nCFDmgsGtlACa-vKEGVKLY~ynIRs~hvE~~R~~A~e~AL~da~~qGls~~eaAk~Aqk 106 (265)
.++++...+.. .+..+ -+.|+|.++.... .+.|.-+|+-+|.-. -.-+.+++.+.+ +++.++|-+--++
T Consensus 174 ~~~~~~~~~~~~~~~~~-~lvdiG~~~t~l~i~~~g~~~~~r~i~~G------~~~i~~~i~~~~--~~~~~~Ae~~k~~ 244 (348)
T TIGR01175 174 RLLGEQLASRTYRLTDA-ALVDIGATSSTLNLLHPGRMLFTREVPFG------TRQLTSELSRAY--GLNPEEAGEAKQQ 244 (348)
T ss_pred HHHHhhCccccccCceE-EEEEECCCcEEEEEEECCeEEEEEEeech------HHHHHHHHHHHc--CCCHHHHHHHHhc
Confidence 35665544322 22212 3899999987665 677888898888754 223444444433 4565555432221
Q ss_pred HHHHHHHHHHHHhhhhhcch---hhcchhhhhhhhhcCccceeeeecc
Q 024641 107 EGAKAAKLAKRQAKRIIGPI---IAAGWDFFEAIYYGGTITEGFIRGT 151 (265)
Q Consensus 107 ~g~kAAKlA~rQAkRI~GPi---issgWDfFEalYyGGt~tEgflRGt 151 (265)
.+. +........+.++.++ |+.-.|||..-+.+..+-.-+|=|-
T Consensus 245 ~~~-~~~~~~~~~~~~~~~l~~eI~~~l~~~~~~~~~~~i~~I~LtGg 291 (348)
T TIGR01175 245 GGL-PLLYDPEVLRRFKGELVDEIRRSLQFFTAQSGTNSLDGLVLAGG 291 (348)
T ss_pred CCC-CCchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCcccceEEEECc
Confidence 110 0000111122333333 3556777766654444434455443
No 50
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=30.24 E-value=38 Score=27.14 Aligned_cols=37 Identities=22% Similarity=0.270 Sum_probs=27.2
Q ss_pred eeeccCCceeee---eeecceEEEEeechhHHHHHHHHHH
Q 024641 46 NCFDMGSGTVAC---GVKEGVKLYFYNIRAAHVERARNVA 82 (265)
Q Consensus 46 nCFDmgsGtlAC---avKEGVKLY~ynIRs~hvE~~R~~A 82 (265)
++.|+|||+=.+ ..+.+.+++..-+....++.+|+.+
T Consensus 22 ~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~ 61 (179)
T TIGR00537 22 DVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENA 61 (179)
T ss_pred eEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHH
Confidence 589999998443 3445557888888888887777765
No 51
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=30.14 E-value=32 Score=23.16 Aligned_cols=36 Identities=31% Similarity=0.361 Sum_probs=22.2
Q ss_pred eccCCcee---eeeeec-ceEEEEeechhHHHHHHHHHHH
Q 024641 48 FDMGSGTV---ACGVKE-GVKLYFYNIRAAHVERARNVAI 83 (265)
Q Consensus 48 FDmgsGtl---ACavKE-GVKLY~ynIRs~hvE~~R~~A~ 83 (265)
.|+|||+= ....+. +.+++.-.+=...++.+|++..
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~ 40 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLK 40 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTT
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhccc
Confidence 47777752 223344 7888888887777777777653
No 52
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=29.52 E-value=37 Score=27.96 Aligned_cols=40 Identities=30% Similarity=0.248 Sum_probs=28.9
Q ss_pred eeeeccCCcee---eeeeecceEEEEeechhHHHHHHHHHHHH
Q 024641 45 LNCFDMGSGTV---ACGVKEGVKLYFYNIRAAHVERARNVAIE 84 (265)
Q Consensus 45 ~nCFDmgsGtl---ACavKEGVKLY~ynIRs~hvE~~R~~A~e 84 (265)
..+.|+|||+= ....+.+.+++-.-|=...++.+|+++.+
T Consensus 57 ~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~~ 99 (219)
T TIGR02021 57 KRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQG 99 (219)
T ss_pred CEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh
Confidence 47899999972 22344577888888888888888877644
No 53
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=29.24 E-value=11 Score=35.20 Aligned_cols=24 Identities=38% Similarity=0.632 Sum_probs=18.1
Q ss_pred ccccccCceeeeeeecc----CCceeee
Q 024641 34 DASSQSGKFTILNCFDM----GSGTVAC 57 (265)
Q Consensus 34 e~sSkSGkFT~~nCFDm----gsGtlAC 57 (265)
=.||-|||.||+-|.++ ..|.+.-
T Consensus 38 IGsSGSGKSTfLRCiN~LE~P~~G~I~v 65 (256)
T COG4598 38 IGSSGSGKSTFLRCINFLEKPSAGSIRV 65 (256)
T ss_pred ecCCCCchhHHHHHHHhhcCCCCceEEE
Confidence 35899999999999876 4555543
No 54
>PRK12413 phosphomethylpyrimidine kinase; Provisional
Probab=29.21 E-value=1.5e+02 Score=24.91 Aligned_cols=36 Identities=17% Similarity=0.208 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHH
Q 024641 81 VAIEKAVVDALSQGLSSNDAAKQAQKEGAKAAKLAK 116 (265)
Q Consensus 81 ~A~e~AL~da~~qGls~~eaAk~Aqk~g~kAAKlA~ 116 (265)
.++-.++..++.+|+++.||.+.|+.--.++-+.+.
T Consensus 209 Daf~a~~~~~l~~g~~l~ea~~~A~~~~~~~l~~~~ 244 (253)
T PRK12413 209 CTFASSIASQLVKGKSPLEAVKNSKDFVYQAIQQSD 244 (253)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 478889999999999999999999877766665544
No 55
>cd07581 nitrilase_3 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=28.93 E-value=47 Score=27.55 Aligned_cols=31 Identities=16% Similarity=0.291 Sum_probs=23.8
Q ss_pred cCceeeeeeeccCCceeeee-eecceEEEEee
Q 024641 39 SGKFTILNCFDMGSGTVACG-VKEGVKLYFYN 69 (265)
Q Consensus 39 SGkFT~~nCFDmgsGtlACa-vKEGVKLY~yn 69 (265)
-+|+-++-|+|.-...++.. +++|+.|+++-
T Consensus 139 ~~kig~~IC~D~~~pe~~~~~~~~ga~lil~p 170 (255)
T cd07581 139 GVKVGLATCYDLRFPELARALALAGADVIVVP 170 (255)
T ss_pred CceEEEEEEecccCHHHHHHHHHCCCcEEEEC
Confidence 37888999999887766653 56789998864
No 56
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=28.64 E-value=93 Score=24.51 Aligned_cols=42 Identities=21% Similarity=0.241 Sum_probs=32.6
Q ss_pred eeeeeeeccCCce----eeeee-----ecceEEEEeechhHHHHHHHHHHH
Q 024641 42 FTILNCFDMGSGT----VACGV-----KEGVKLYFYNIRAAHVERARNVAI 83 (265)
Q Consensus 42 FT~~nCFDmgsGt----lACav-----KEGVKLY~ynIRs~hvE~~R~~A~ 83 (265)
.....+.|+|||. .+++- +-+.++..-..+..++|.++.++-
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~ 74 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQ 74 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHH
Confidence 3455678999993 44555 678899999999999999988864
No 57
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=28.61 E-value=14 Score=29.06 Aligned_cols=48 Identities=31% Similarity=0.373 Sum_probs=27.1
Q ss_pred HHHHhccccccccCceeeeeeeccCCceeeee-eecceEEEEeechhHHHHHH
Q 024641 27 CRQLVGEDASSQSGKFTILNCFDMGSGTVACG-VKEGVKLYFYNIRAAHVERA 78 (265)
Q Consensus 27 ~R~LVGee~sSkSGkFT~~nCFDmgsGtlACa-vKEGVKLY~ynIRs~hvE~~ 78 (265)
.++|+ ..+|+.| .+++++| +||||.+=| .+.|=+-+-..|-...++.|
T Consensus 181 ~~~lI--~~~t~~g-diVlDpF-~GSGTT~~aa~~l~R~~ig~E~~~~y~~~a 229 (231)
T PF01555_consen 181 IERLI--KASTNPG-DIVLDPF-AGSGTTAVAAEELGRRYIGIEIDEEYCEIA 229 (231)
T ss_dssp HHHHH--HHHS-TT--EEEETT--TTTHHHHHHHHTT-EEEEEESSHHHHHHH
T ss_pred HHHHH--Hhhhccc-eeeehhh-hccChHHHHHHHcCCeEEEEeCCHHHHHHh
Confidence 34444 4456666 6899999 999986543 34455555555555555443
No 58
>PLN03132 NADH dehydrogenase (ubiquinone) flavoprotein 1; Provisional
Probab=28.41 E-value=61 Score=32.24 Aligned_cols=74 Identities=22% Similarity=0.251 Sum_probs=49.7
Q ss_pred chhhhhhhh-hcCccceeeeecccccccccccccccccccc--chhhh----ccccccccccceEeeeeee----ehhhH
Q 024641 130 GWDFFEAIY-YGGTITEGFIRGTGTLFGAYAGGFLGEERLG--RFGYL----VGSHLGSWAGGRIGLMIYD----VVNGV 198 (265)
Q Consensus 130 gWDfFEalY-yGGt~tEgflRGtGTL~Gty~GGf~GE~RlG--r~GYL----vGShlGSWvGgRIGLM~YD----V~ngv 198 (265)
|--+=|.|+ ++|.+..|.-+-..-+.|-+.|+++.++.+- .+-|= +||-||| . |++|+| ++.-+
T Consensus 291 Gt~l~eli~~~~GG~~~g~~~~~~vi~GG~s~~~l~~~~~~~~~ld~~~l~~~Gs~lGs----G-gviV~de~~~~v~~~ 365 (461)
T PLN03132 291 SIPLKELIERHCGGVRGGWDNLLAIIPGGSSVPLLPKKICDDVLMDFDALKAVQSGLGT----A-AVIVMDKSTDVVDAI 365 (461)
T ss_pred CCCHHHHHHHHcCCCCCCccccceEEECCCCcccccHHHhCCCCCCHHHHHhcCCCcCc----c-eEEEECCCCCHHHHH
Confidence 445567777 7887777643334567788899999988773 33342 2555554 2 678886 66777
Q ss_pred HHHHHHhccc
Q 024641 199 HFLLQFVQSE 208 (265)
Q Consensus 199 ~~ll~~vq~~ 208 (265)
.++++|.+.|
T Consensus 366 ~~~~~F~a~E 375 (461)
T PLN03132 366 ARLSYFYKHE 375 (461)
T ss_pred HHHHHHHhcc
Confidence 7888888876
No 59
>PRK01558 V-type ATP synthase subunit E; Provisional
Probab=28.35 E-value=1.5e+02 Score=25.41 Aligned_cols=15 Identities=27% Similarity=0.350 Sum_probs=10.3
Q ss_pred echhHHHHHHHHHHH
Q 024641 69 NIRAAHVERARNVAI 83 (265)
Q Consensus 69 nIRs~hvE~~R~~A~ 83 (265)
+|++-.||.|++.|-
T Consensus 11 ki~~~~~eeA~~eA~ 25 (198)
T PRK01558 11 KIKKDGLEEAERLAN 25 (198)
T ss_pred HHHHHHHHHHHHHHH
Confidence 567777777777663
No 60
>cd00225 API3 Ascaris pepsin inhibitor-3 (API3); protein inhibitor that reversibly inhibits aspartic proteinase cathepsin E, and gastric enzymes pepsin and gastricsin.
Probab=28.29 E-value=2e+02 Score=25.66 Aligned_cols=58 Identities=21% Similarity=0.281 Sum_probs=35.1
Q ss_pred ccCC-ceeeeeeecceEEEEeechhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 024641 49 DMGS-GTVACGVKEGVKLYFYNIRAAHVERARNVAIEKAVVDALSQGLSSNDAAKQAQKEGAKA 111 (265)
Q Consensus 49 Dmgs-GtlACavKEGVKLY~ynIRs~hvE~~R~~A~e~AL~da~~qGls~~eaAk~Aqk~g~kA 111 (265)
-+|. ||-.|.|+ +-+||.+++|---+...-|+-...=.+|. --.++..|++-++-.+-
T Consensus 5 ~g~~ggs~gCvVt-~N~Lfang~~lReLt~~Eq~el~~y~~d~----~~yK~~~k~~l~er~~~ 63 (159)
T cd00225 5 SGGGGGSAGCVVT-DNVLFANGFPLRELTPDEQQELAQYVEDV----ADYKEEVKQALKERQEG 63 (159)
T ss_pred ecccCCceeEEEE-CCEEEecCceeeeCCHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHh
Confidence 3443 99999998 56899999986655554444333333332 23556666665554443
No 61
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=28.20 E-value=54 Score=32.03 Aligned_cols=53 Identities=25% Similarity=0.432 Sum_probs=42.5
Q ss_pred eeeeeeeccCCceeeeeeecceEEEEeechhHHHHHHHHHHHHHHHHHHHhcCC
Q 024641 42 FTILNCFDMGSGTVACGVKEGVKLYFYNIRAAHVERARNVAIEKAVVDALSQGL 95 (265)
Q Consensus 42 FT~~nCFDmgsGtlACavKEGVKLY~ynIRs~hvE~~R~~A~e~AL~da~~qGl 95 (265)
-.|+-+=-||+|--.+..+.|.++.+||+...-+++++++ +++.|...+..|.
T Consensus 8 V~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~-i~~~l~~~~~~G~ 60 (503)
T TIGR02279 8 VAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAG-IEARLNSLVTKGK 60 (503)
T ss_pred EEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHH-HHHHHHHHHhcCC
Confidence 4455555688887788889999999999999999988776 4677888888884
No 62
>PHA02357 hypothetical protein
Probab=27.53 E-value=1e+02 Score=24.89 Aligned_cols=30 Identities=30% Similarity=0.523 Sum_probs=24.5
Q ss_pred EEEeechhHHHHHHHHHHHHHHHHHHHhcCC
Q 024641 65 LYFYNIRAAHVERARNVAIEKAVVDALSQGL 95 (265)
Q Consensus 65 LY~ynIRs~hvE~~R~~A~e~AL~da~~qGl 95 (265)
-|+|--|-..|+.+|.+|+| |+-+.+..|+
T Consensus 24 ~yvyvnkDtivds~k~k~~e-ait~sv~~~l 53 (81)
T PHA02357 24 AYVYVNKDTIVDSAKEKATE-AITESVGGGL 53 (81)
T ss_pred eEEEEechHHHHHHHHHHHH-HHHHhhcccC
Confidence 46666689999999999986 6778888877
No 63
>TIGR03850 bind_CPR_0540 carbohydrate ABC transporter substrate-binding protein, CPR_0540 family. Members of this protein are the substrate-binding protein of a predicted carbohydrate transporter operon, together with permease subunits of ABC transporter homology families. This substrate-binding protein frequently co-occurs in genomes with a family of disaccharide phosphorylases, TIGR02336, suggesting that the molecule transported will include beta-D-galactopyranosyl-(1-3)-N-acetyl-D-glucosamine and related carbohydrates. Members of this family are sporadically strain by strain, often in species with a human host association, including Propionibacterium acnes and Clostridium perfringens, and Bacillus cereus.
Probab=27.46 E-value=1.1e+02 Score=27.21 Aligned_cols=32 Identities=9% Similarity=0.075 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 024641 80 NVAIEKAVVDALSQGLSSNDAAKQAQKEGAKA 111 (265)
Q Consensus 80 ~~A~e~AL~da~~qGls~~eaAk~Aqk~g~kA 111 (265)
...+.+++++++....+|+||++++++.-++.
T Consensus 404 ~~~~~~~~~~~~~g~~t~~ea~~~~~~~~~~~ 435 (437)
T TIGR03850 404 KDTLYGTVNSVVSGDKTVEEWQDSVEEASDKL 435 (437)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHh
Confidence 45688899999999999999999988876654
No 64
>PF03701 UPF0181: Uncharacterised protein family (UPF0181); InterPro: IPR005371 This family contains small proteins of about 50 amino acids of unknown function. The family includes YoaH P76260 from SWISSPROT.
Probab=27.28 E-value=1.2e+02 Score=22.68 Aligned_cols=26 Identities=27% Similarity=0.492 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHH
Q 024641 80 NVAIEKAVVDALSQGLSSNDAAKQAQK 106 (265)
Q Consensus 80 ~~A~e~AL~da~~qGls~~eaAk~Aqk 106 (265)
|.|.|+ +++..+||||..||.+...+
T Consensus 14 Q~AvE~-Iq~LMaqGmSsgEAI~~VA~ 39 (51)
T PF03701_consen 14 QQAVER-IQELMAQGMSSGEAIAIVAQ 39 (51)
T ss_pred HHHHHH-HHHHHHhcccHHHHHHHHHH
Confidence 566665 78899999999999876433
No 65
>PRK09474 malE maltose ABC transporter periplasmic protein; Reviewed
Probab=26.94 E-value=89 Score=27.37 Aligned_cols=29 Identities=24% Similarity=0.251 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 024641 81 VAIEKAVVDALSQGLSSNDAAKQAQKEGA 109 (265)
Q Consensus 81 ~A~e~AL~da~~qGls~~eaAk~Aqk~g~ 109 (265)
.++..+++.++...++++||.+++|+...
T Consensus 367 ~~~~~~~~~~~~g~~s~~~al~~~~~~~~ 395 (396)
T PRK09474 367 YAMRTAIINATSGRQTVDAALDDAAKRIT 395 (396)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 36677778778777999999999998754
No 66
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=26.93 E-value=23 Score=33.01 Aligned_cols=41 Identities=27% Similarity=0.283 Sum_probs=30.7
Q ss_pred cCCceeeee----eecceEEEEeechhHHHHHHHHHHHHHHHHHH
Q 024641 50 MGSGTVACG----VKEGVKLYFYNIRAAHVERARNVAIEKAVVDA 90 (265)
Q Consensus 50 mgsGtlACa----vKEGVKLY~ynIRs~hvE~~R~~A~e~AL~da 90 (265)
.|||.|++. +..-=+++.|-||.-|.|.||+..-+-.|.|.
T Consensus 103 tGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~ 147 (256)
T COG2519 103 TGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDR 147 (256)
T ss_pred cCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccc
Confidence 467777764 44545899999999999999987666555553
No 67
>COG2937 PlsB Glycerol-3-phosphate O-acyltransferase [Lipid metabolism]
Probab=26.69 E-value=1.3e+02 Score=32.28 Aligned_cols=53 Identities=32% Similarity=0.487 Sum_probs=42.1
Q ss_pred HHHHHHHHHH-HHhcCCChHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhcchh
Q 024641 80 NVAIEKAVVD-ALSQGLSSNDAAKQAQKEGAKAAKLAKRQAKRIIGPIIAAGWD 132 (265)
Q Consensus 80 ~~A~e~AL~d-a~~qGls~~eaAk~Aqk~g~kAAKlA~rQAkRI~GPiissgWD 132 (265)
..|+++|++| |-+.|-|.++|-|.|++...-.|...+--.=|..+=|+|=+||
T Consensus 222 s~~ir~aia~eak~~~is~EkA~k~a~~~a~eiaa~fS~~~vr~~dr~ls~~wn 275 (810)
T COG2937 222 SAAIRKAIADEARSKGISVEKAQKMADELATEIAADFSYELIRVLDRILSRGWN 275 (810)
T ss_pred hHHHHHHHhhHhhccCCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhh
Confidence 3456667665 4578999999999999999977777776777778888888888
No 68
>PF14613 DUF4449: Protein of unknown function (DUF4449)
Probab=26.42 E-value=88 Score=27.22 Aligned_cols=28 Identities=14% Similarity=0.157 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHhcCCChHHHHHHH
Q 024641 77 RARNVAIEKAVVDALSQGLSSNDAAKQA 104 (265)
Q Consensus 77 ~~R~~A~e~AL~da~~qGls~~eaAk~A 104 (265)
++=.+++++||.+++.+++..-|+--..
T Consensus 29 ~~vR~alqKalE~qIr~~~~~~D~~l~~ 56 (164)
T PF14613_consen 29 KVVRPALQKALEKQIRDAFEKLDRFLYD 56 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 3345677888888887777777764433
No 69
>PLN02798 nitrilase
Probab=26.42 E-value=54 Score=28.42 Aligned_cols=30 Identities=13% Similarity=0.361 Sum_probs=23.1
Q ss_pred cCceeeeeeeccCCcee-eeee-ecceEEEEe
Q 024641 39 SGKFTILNCFDMGSGTV-ACGV-KEGVKLYFY 68 (265)
Q Consensus 39 SGkFT~~nCFDmgsGtl-ACav-KEGVKLY~y 68 (265)
-|||-++-|+|+-.-.+ .+.+ ++|+.|+++
T Consensus 155 ~~k~g~~IC~D~~fpe~~r~~a~~~Gadlil~ 186 (286)
T PLN02798 155 VGRLGLTVCYDLRFPELYQQLRFEHGAQVLLV 186 (286)
T ss_pred CceEEEEEEEcccChHHHHHHHHhCCCcEEEE
Confidence 47888999999776554 4555 899999986
No 70
>PF09429 Wbp11: WW domain binding protein 11; InterPro: IPR019007 Synonym(s): Rsp5 or WWP domain The WW domain is a short conserved region in a number of unrelated proteins, which folds as a stable, triple stranded beta-sheet. This short domain of approximately 40 amino acids, may be repeated up to four times in some proteins [, , , ]. The name WW or WWP derives from the presence of two signature tryptophan residues that are spaced 20-23 amino acids apart and are present in most WW domains known to date, as well as that of a conserved Pro. The WW domain binds to proteins with particular proline-motifs, [AP]-P-P-[AP]-Y, and/or phosphoserine- phosphothreonine-containing motifs [, ]. It is frequently associated with other domains typical for proteins in signal transduction processes. A large variety of proteins containing the WW domain are known. These include; dystrophin, a multidomain cytoskeletal protein; utrophin, a dystrophin-like protein of unknown function; vertebrate YAP protein, substrate of an unknown serine kinase; Mus musculus (Mouse) NEDD-4, involved in the embryonic development and differentiation of the central nervous system; Saccharomyces cerevisiae (Baker's yeast) RSP5, similar to NEDD-4 in its molecular organisation; Rattus norvegicus (Rat) FE65, a transcription-factor activator expressed preferentially in liver; Nicotiana tabacum (Common tobacco) DB10 protein, amongst others. This entry represents WW domain-binding protein 11, which may play a role in the regulation of pre-mRNA processing. ; GO: 0006396 RNA processing
Probab=25.88 E-value=1.2e+02 Score=23.01 Aligned_cols=49 Identities=20% Similarity=0.302 Sum_probs=27.2
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHhhhhh-------cchhhcchhhhhhhhhcCcc
Q 024641 94 GLSSNDAAKQAQKEGAKAAKLAKRQAKRII-------GPIIAAGWDFFEAIYYGGTI 143 (265)
Q Consensus 94 Gls~~eaAk~Aqk~g~kAAKlA~rQAkRI~-------GPiissgWDfFEalYyGGt~ 143 (265)
.|.|.||++.+++.-...=.-+-||+.|=- .. |=.-.|-++.+-++|.+
T Consensus 3 ~~NP~da~RK~~kkKElkKnK~~R~~~R~~~l~~kdp~~-l~~ei~~L~~~e~~~~l 58 (78)
T PF09429_consen 3 SMNPTDAYRKEQKKKELKKNKKERQKVREAKLAKKDPDR-LQEEIDKLEEMEFNGKL 58 (78)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHH-HHHHHHHHHHHHhCCCC
Confidence 588999999988765533222222222211 11 12345667777777665
No 71
>PRK12654 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=25.66 E-value=57 Score=28.11 Aligned_cols=53 Identities=13% Similarity=0.187 Sum_probs=39.9
Q ss_pred CceeeeeeeccCCceeeeeeecceE------EEEeechhHHHHHHHH--HHHHHHHHHHHh
Q 024641 40 GKFTILNCFDMGSGTVACGVKEGVK------LYFYNIRAAHVERARN--VAIEKAVVDALS 92 (265)
Q Consensus 40 GkFT~~nCFDmgsGtlACavKEGVK------LY~ynIRs~hvE~~R~--~A~e~AL~da~~ 92 (265)
+..-+-|+.-+.+|||..-+.+.-| ||++-+=..--|..++ +.+|+.|.-++.
T Consensus 49 ~itlLAnsITLTPGTlsldv~~d~~~~~~~~LlVHaLd~~d~e~~~~~Ik~~E~~L~~~v~ 109 (151)
T PRK12654 49 QITALAASITATPGTLSLGLREPRKPGDPRILLVQAVFGSDPVSVLADIADMEERLAPSVK 109 (151)
T ss_pred HHHHHHHhHhcCCCeEEEEecCCCCcCcCceEEEEeccCCCHHHHHHHHHHHHHHHHHHhc
Confidence 5666789999999999999998765 9998776544443333 228888888775
No 72
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=25.54 E-value=49 Score=23.86 Aligned_cols=38 Identities=24% Similarity=0.357 Sum_probs=28.5
Q ss_pred eeccCCce---eeeeeecc-eEEEEeechhHHHHHHHHHHHH
Q 024641 47 CFDMGSGT---VACGVKEG-VKLYFYNIRAAHVERARNVAIE 84 (265)
Q Consensus 47 CFDmgsGt---lACavKEG-VKLY~ynIRs~hvE~~R~~A~e 84 (265)
.+|+|||+ +.++.+.+ ..++.+-|-...++.+|+.+-.
T Consensus 4 vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~ 45 (117)
T PF13659_consen 4 VLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPR 45 (117)
T ss_dssp EEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHH
T ss_pred EEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHH
Confidence 46777765 34556777 8999999999999998866544
No 73
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=25.50 E-value=67 Score=27.96 Aligned_cols=50 Identities=18% Similarity=0.290 Sum_probs=35.3
Q ss_pred eeeeeccCCceeeeeeecceEEEEeechhHHHHHHHHHHHHHHHHHHHhcC
Q 024641 44 ILNCFDMGSGTVACGVKEGVKLYFYNIRAAHVERARNVAIEKAVVDALSQG 94 (265)
Q Consensus 44 ~~nCFDmgsGtlACavKEGVKLY~ynIRs~hvE~~R~~A~e~AL~da~~qG 94 (265)
|+-+=-||++--.|..+.|-++.+|++....+++++++ ++..+...+..|
T Consensus 6 VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~-~~~~~~~~~~~g 55 (288)
T PRK09260 6 VVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQE-IASIFEQGVARG 55 (288)
T ss_pred EECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHH-HHHHHHHHHHcC
Confidence 33334466665567778899999999999999998876 445555555544
No 74
>cd07564 nitrilases_CHs Nitrilases, cyanide hydratase (CH)s, and similar proteins (class 1 nitrilases). Nitrilases (nitrile aminohydrolases, EC:3.5.5.1) hydrolyze nitriles (RCN) to ammonia and the corresponding carboxylic acid. Most nitrilases prefer aromatic nitriles, some prefer arylacetonitriles and others aliphatic nitriles. This group includes the nitrilase cyanide dihydratase (CDH), which hydrolyzes inorganic cyanide (HCN) to produce formate. It also includes cyanide hydratase (CH), which hydrolyzes HCN to formamide. This group includes four Arabidopsis thaliana nitrilases (Ath)NIT1-4. AthNIT1-3 have a strong substrate preference for phenylpropionitrile (PPN) and other nitriles which may originate from the breakdown of glucosinolates. The product of PPN hydrolysis, phenylacetic acid has auxin activity. AthNIT1-3 can also convert indoacetonitrile to indole-3-acetic acid (IAA, auxin), but with a lower affinity and velocity. From their expression patterns, it has been speculated that
Probab=25.33 E-value=49 Score=28.93 Aligned_cols=33 Identities=12% Similarity=0.174 Sum_probs=24.9
Q ss_pred cccCceeeeeeeccCCceee-eeeecceEEEEee
Q 024641 37 SQSGKFTILNCFDMGSGTVA-CGVKEGVKLYFYN 69 (265)
Q Consensus 37 SkSGkFT~~nCFDmgsGtlA-CavKEGVKLY~yn 69 (265)
.+-|||-++=|+|.=.--++ +.+++|+.|++++
T Consensus 147 ~~~~kig~~ICyD~~fPe~~r~~a~~ga~ii~~~ 180 (297)
T cd07564 147 TPIGRLGALICWENYMPLARYALYAQGEQIHVAP 180 (297)
T ss_pred cCCceEEEEEEhhcCCHHHHHHHHHCCCeEEEEC
Confidence 44578888889998776554 4578899998873
No 75
>PF14014 DUF4230: Protein of unknown function (DUF4230)
Probab=25.03 E-value=1.1e+02 Score=24.14 Aligned_cols=34 Identities=29% Similarity=0.505 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHH------HHHHHHhhhhhcchhhc-ch
Q 024641 98 NDAAKQAQKEGAKAA------KLAKRQAKRIIGPIIAA-GW 131 (265)
Q Consensus 98 ~eaAk~Aqk~g~kAA------KlA~rQAkRI~GPiiss-gW 131 (265)
.++-++|++...+.| ..|..+|++.+-+++.+ ||
T Consensus 109 ~~~~~~a~~~~~~~a~~~~i~~~A~~~a~~~l~~ll~~~g~ 149 (157)
T PF14014_consen 109 NEAQKEAKKKIEQEANESGILEQAKENAEKALEQLLKSLGF 149 (157)
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhccc
No 76
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=24.73 E-value=92 Score=27.14 Aligned_cols=53 Identities=15% Similarity=0.328 Sum_probs=38.9
Q ss_pred eeeeeeeccCCceeeeeeecceEEEEeechhHHHHHHHHHHHHHHHHHHHhcCC
Q 024641 42 FTILNCFDMGSGTVACGVKEGVKLYFYNIRAAHVERARNVAIEKAVVDALSQGL 95 (265)
Q Consensus 42 FT~~nCFDmgsGtlACavKEGVKLY~ynIRs~hvE~~R~~A~e~AL~da~~qGl 95 (265)
-.|+-+=-||++-.....+-|..+++|+.....+++++++. ++++.+.+..|.
T Consensus 7 V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~-~~~~~~~~~~g~ 59 (295)
T PLN02545 7 VGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSI-SSSLARLVKKGK 59 (295)
T ss_pred EEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHH-HHHHHHHHHcCC
Confidence 44555555666655566678999999999998888887665 677777777764
No 77
>PF06754 PhnG: Phosphonate metabolism protein PhnG; InterPro: IPR009609 This family consists of several bacterial phosphonate metabolism protein PhnG sequences. In Escherichia coli, the phn operon encodes proteins responsible for the uptake and breakdown of phosphonates. The exact function of PhnG is unknown, however it is thought likely that along with six other proteins PhnG makes up the the C-P (carbon-phosphorus) lyase [].; GO: 0015716 phosphonate transport, 0019634 phosphonate metabolic process
Probab=24.55 E-value=2.5e+02 Score=23.66 Aligned_cols=53 Identities=34% Similarity=0.339 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHhcCCChHHHHHHH-HH--HHHHHHHHHHHHhhhhhcchhhcchhhh
Q 024641 77 RARNVAIEKAVVDALSQGLSSNDAAKQA-QK--EGAKAAKLAKRQAKRIIGPIIAAGWDFF 134 (265)
Q Consensus 77 ~~R~~A~e~AL~da~~qGls~~eaAk~A-qk--~g~kAAKlA~rQAkRI~GPiissgWDfF 134 (265)
+-+.+|.--|+.||+-|.-.+.+..... .. +.+.+++.+.|+++ +-++-.|||
T Consensus 84 ~d~~~A~~~Av~DAllq~~~~~~~~~~~li~~l~~~~~~~~~~~~~~-----~aaTkVdFf 139 (146)
T PF06754_consen 84 RDKRHAELAAVIDALLQAPLPHAELWEALIAPLAAARAERRAERAAE-----AAATKVDFF 139 (146)
T ss_pred CCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHHHHHHHHH-----HhcCeeeeE
Confidence 4457888889999999965555443211 11 22234444444444 567777877
No 78
>PF08136 Ribosomal_S22: 30S ribosomal protein subunit S22 family; InterPro: IPR012607 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family consists of the 30S ribosomal proteins subunit S22 polypeptides. This polypeptide is 47 amino acids in length and has a molecular weight of about 5 kDa. The S22 subunit is a component of the stationary-phase-specific ribosomal protein and is assembled in the ribosomal particles in the stationary phase. This subunit along with other stationary-phase-specific ribosomal proteins result in compositional changes of ribosomes during the stationary phase. The significance of this change is not clear as yet [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005840 ribosome
Probab=24.49 E-value=32 Score=25.08 Aligned_cols=11 Identities=36% Similarity=0.755 Sum_probs=8.6
Q ss_pred HHHHhhhhhcc
Q 024641 115 AKRQAKRIIGP 125 (265)
Q Consensus 115 A~rQAkRI~GP 125 (265)
+-||||||+|-
T Consensus 3 sNR~AR~iLGL 13 (45)
T PF08136_consen 3 SNRKARHILGL 13 (45)
T ss_pred cchHHHHHhCC
Confidence 35899999983
No 79
>TIGR03293 PhnG_redo phosphonate C-P lyase system protein PhnG. PhnH is a component of the C-P lyase system (GenProp0232) for the catabolism of phosphonate compounds. The specific function of this component is unknown. This model is based on Pfam model pfam06754.2, and has been broadened to include sequences missed by that model which are clearly true positive hits based on genome context.
Probab=24.39 E-value=2.6e+02 Score=23.65 Aligned_cols=57 Identities=35% Similarity=0.323 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhcchhhh
Q 024641 76 ERARNVAIEKAVVDALSQGLSSNDAAKQAQKEGAKAAKLAKRQAKRIIGPIIAAGWDFF 134 (265)
Q Consensus 76 E~~R~~A~e~AL~da~~qGls~~eaAk~Aqk~g~kAAKlA~rQAkRI~GPiissgWDfF 134 (265)
-+.+.+|+--||.||+-|.-.+.+. ...+.....+++++.+++.|- -=+-++-.|||
T Consensus 82 Gr~~~~A~~~Ai~DAllq~~~~~~~-~~~~li~pl~~~~~~~~~~r~-~~~aaTkVdFf 138 (144)
T TIGR03293 82 GRDKRHAELLAVLDALLQAPLLHDE-LIADLIAPLAQRLAERRARRQ-AEAAATRVDFF 138 (144)
T ss_pred cCCHHHHHHHHHHHHHhcCCcchhH-HHHHHHHHHHHHHHHHHHHHH-HHHhcceeeee
Confidence 3456889999999999987665332 333334444444433333221 11345566776
No 80
>TIGR00607 rad52 recombination protein rad52. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=24.12 E-value=1e+02 Score=27.19 Aligned_cols=14 Identities=36% Similarity=0.520 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHh
Q 024641 79 RNVAIEKAVVDALS 92 (265)
Q Consensus 79 R~~A~e~AL~da~~ 92 (265)
|..|+|+|..+|++
T Consensus 98 K~~A~ekAKKeAvT 111 (161)
T TIGR00607 98 KALAFEKAKKEAVT 111 (161)
T ss_pred HHHHHHHHHHHHHH
Confidence 34455555555543
No 81
>cd01169 HMPP_kinase 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate kinase (HMPP-kinase) catalyzes two consecutive phosphorylation steps in the thiamine phosphate biosynthesis pathway, leading to the synthesis of vitamin B1. The first step is the phosphorylation of the hydroxyl group of HMP to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate (HMP-P) and then the phophorylation of HMP-P to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine pyrophosphate (HMP-PP), which is the substrate for the thiamine synthase coupling reaction.
Probab=24.00 E-value=1.4e+02 Score=24.56 Aligned_cols=34 Identities=24% Similarity=0.417 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Q 024641 80 NVAIEKAVVDALSQGLSSNDAAKQAQKEGAKAAK 113 (265)
Q Consensus 80 ~~A~e~AL~da~~qGls~~eaAk~Aqk~g~kAAK 113 (265)
=.+.-.+|..++.+|+++.||.+.|+.--.++-+
T Consensus 207 GD~f~a~l~a~l~~g~~~~~A~~~A~~~~~~~i~ 240 (242)
T cd01169 207 GCTLSSAIAANLAKGLSLEEAVREAKEYVTQAIR 240 (242)
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Confidence 3688889999999999999999999887666544
No 82
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=23.49 E-value=1.8e+02 Score=28.27 Aligned_cols=42 Identities=33% Similarity=0.431 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHhcCCChHHHH------------------HHHHHHHHHHHHHHHHHh
Q 024641 78 ARNVAIEKAVVDALSQGLSSNDAA------------------KQAQKEGAKAAKLAKRQA 119 (265)
Q Consensus 78 ~R~~A~e~AL~da~~qGls~~eaA------------------k~Aqk~g~kAAKlA~rQA 119 (265)
.=|.|+-+|.+|++.+|.=|+|.| +.-++---.|+|+|-+.|
T Consensus 81 ~~q~~~a~av~d~v~~g~~p~~~~~~~~i~~~v~~~~~~~d~~~~~~~ny~at~~ai~~a 140 (391)
T PRK13307 81 PAQAAVAKAVADAVEEGIIPKDKAEDLVIVASVFIHPTAKDYNKIYQYNYGATKLAIKRA 140 (391)
T ss_pred HHHHHHHHHHHHHHHcCCCChhhcCcEEEEEEEEcCchhccHHHHHHHHHHHHHHHHHHH
Confidence 358999999999999999987765 334444556667665544
No 83
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=23.20 E-value=1.5e+02 Score=27.82 Aligned_cols=41 Identities=20% Similarity=0.176 Sum_probs=27.3
Q ss_pred eeeeccCCceeee-eeecceEEEEeechhHHHHHHHHHHHHHHHHHHH
Q 024641 45 LNCFDMGSGTVAC-GVKEGVKLYFYNIRAAHVERARNVAIEKAVVDAL 91 (265)
Q Consensus 45 ~nCFDmgsGtlAC-avKEGVKLY~ynIRs~hvE~~R~~A~e~AL~da~ 91 (265)
.-|+|||.||.-. ..++|.-.|+-.|.-. -..+.+.|.+.+
T Consensus 206 v~vvDiGggtTdisv~~~G~l~~~~~i~~G------G~~it~dIa~~l 247 (420)
T PRK09472 206 VCVVDIGGGTMDIAVYTGGALRHTKVIPYA------GNVVTSDIAYAF 247 (420)
T ss_pred eEEEEeCCCceEEEEEECCEEEEEeeeech------HHHHHHHHHHHh
Confidence 4589999999855 5677877777666544 223556666555
No 84
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=23.11 E-value=41 Score=31.00 Aligned_cols=51 Identities=33% Similarity=0.461 Sum_probs=36.1
Q ss_pred cccCceeeeeeeccCCce--ee-eeeecce-EEEEeechhHHHHHHHHHHHHHHHHHHH
Q 024641 37 SQSGKFTILNCFDMGSGT--VA-CGVKEGV-KLYFYNIRAAHVERARNVAIEKAVVDAL 91 (265)
Q Consensus 37 SkSGkFT~~nCFDmgsGt--lA-CavKEGV-KLY~ynIRs~hvE~~R~~A~e~AL~da~ 91 (265)
.+.|+ ..+|+|||| |+ +|.|-|. +++-.-|-..-|+.+|+-+..|.+.+-+
T Consensus 159 ~~~g~----~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~ 213 (295)
T PF06325_consen 159 VKPGK----RVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRI 213 (295)
T ss_dssp SSTTS----EEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCE
T ss_pred ccCCC----EEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeE
Confidence 55565 678999998 21 3455566 5999999999888888887777766654
No 85
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=22.91 E-value=82 Score=31.98 Aligned_cols=57 Identities=16% Similarity=0.215 Sum_probs=44.8
Q ss_pred ceeeeeeeccCCceeeeeeecceEEEEeechhHHHHHHHHHHHHHHHHHHHhcCCChH
Q 024641 41 KFTILNCFDMGSGTVACGVKEGVKLYFYNIRAAHVERARNVAIEKAVVDALSQGLSSN 98 (265)
Q Consensus 41 kFT~~nCFDmgsGtlACavKEGVKLY~ynIRs~hvE~~R~~A~e~AL~da~~qGls~~ 98 (265)
|-.++-.=-||+|--.+..+-|..+.+|.+...-+++++++ +++.|..++..|.-..
T Consensus 315 ~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~-~~~~l~~~~~~g~~~~ 371 (715)
T PRK11730 315 QAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTE-AAKLLNKQVERGKIDG 371 (715)
T ss_pred eEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHH-HHHHHHHHHHcCCCCh
Confidence 34566566677777777788899999999999999999876 6778888888886543
No 86
>PRK05114 hypothetical protein; Provisional
Probab=22.61 E-value=1.6e+02 Score=22.59 Aligned_cols=25 Identities=28% Similarity=0.493 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHH
Q 024641 80 NVAIEKAVVDALSQGLSSNDAAKQAQ 105 (265)
Q Consensus 80 ~~A~e~AL~da~~qGls~~eaAk~Aq 105 (265)
|.|.|+ ++....+|||..||.+...
T Consensus 14 Q~AVEr-Iq~LMaqGmSsgEAI~~VA 38 (59)
T PRK05114 14 QKAVER-IQELMAQGMSSGEAIALVA 38 (59)
T ss_pred HHHHHH-HHHHHHccccHHHHHHHHH
Confidence 667776 6889999999999987643
No 87
>cd07573 CPA N-carbamoylputrescine amidohydrolase (CPA) (class 11 nitrilases). CPA (EC 3.5.1.53, also known as N-carbamoylputrescine amidase and carbamoylputrescine hydrolase) converts N-carbamoylputrescine to putrescine, a step in polyamine biosynthesis in plants and bacteria. This subgroup includes Arabidopsis thaliana CPA, also known as nitrilase-like 1 (NLP1), and Pseudomonas aeruginosa AguB. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 11. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer; P. aeruginosa AugB is a homohexamer, Arabidopsis thaliana NLP1 is a homooctomer.
Probab=22.52 E-value=66 Score=27.26 Aligned_cols=29 Identities=28% Similarity=0.535 Sum_probs=19.8
Q ss_pred CceeeeeeeccCCceee-eeeecceEEEEe
Q 024641 40 GKFTILNCFDMGSGTVA-CGVKEGVKLYFY 68 (265)
Q Consensus 40 GkFT~~nCFDmgsGtlA-CavKEGVKLY~y 68 (265)
+|+.++-|+|+-.-.++ +.++.|+.|.++
T Consensus 144 ~~ig~~IC~D~~fpe~~r~~~~~gadlil~ 173 (284)
T cd07573 144 GRIGVLICWDQWFPEAARLMALQGAEILFY 173 (284)
T ss_pred ceEEEEEeccccchHHHHHHHHCCCCEEEe
Confidence 57777777777655544 566777877775
No 88
>PRK07105 pyridoxamine kinase; Validated
Probab=22.48 E-value=2.2e+02 Score=24.69 Aligned_cols=39 Identities=18% Similarity=0.021 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHH
Q 024641 80 NVAIEKAVVDALSQGLSSNDAAKQAQKEGAKAAKLAKRQ 118 (265)
Q Consensus 80 ~~A~e~AL~da~~qGls~~eaAk~Aqk~g~kAAKlA~rQ 118 (265)
=.+.-.++..++.+|++..||.+.|..-..++-+.+...
T Consensus 221 GD~f~aa~~~~l~~g~~l~~av~~A~~~~~~~i~~~~~~ 259 (284)
T PRK07105 221 GDIFTSVITGSLLQGDSLPIALDRAVQFIEKGIRATLGL 259 (284)
T ss_pred hHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 357888999999999999999999998888777766443
No 89
>PRK03011 butyrate kinase; Provisional
Probab=22.46 E-value=2.1e+02 Score=27.00 Aligned_cols=115 Identities=21% Similarity=0.258 Sum_probs=60.8
Q ss_pred cHHHHHHHhccccccccCceeeeeeeccCCceeeeeeecceEEEEee----------chhHHH------HHHH-----HH
Q 024641 23 TAEKCRQLVGEDASSQSGKFTILNCFDMGSGTVACGVKEGVKLYFYN----------IRAAHV------ERAR-----NV 81 (265)
Q Consensus 23 tAEK~R~LVGee~sSkSGkFT~~nCFDmgsGtlACavKEGVKLY~yn----------IRs~hv------E~~R-----~~ 81 (265)
.|++..+..|++... -.+ =+.-+|+|.=.|+++.|--+-..| .|+.|+ +..+ ..
T Consensus 161 va~~~a~~~g~~~~~----~n~-I~~hLGtGig~gai~~Gk~idgs~g~agEG~~~~~R~G~l~~~~~~~~~~~g~~s~~ 235 (358)
T PRK03011 161 VARRVAKELGKKYEE----LNL-IVAHLGGGISVGAHRKGRVIDVNNALDGEGPFSPERAGGLPVGDLVELCFSGKYTKE 235 (358)
T ss_pred HHHHHHHHhCCCccc----CcE-EEEEeCCCceeeEEECCEEEecCCccCCCCCcccCcccCcCcHHHHHHHhcCCCCHH
Confidence 356767777765332 222 345699999999999997665555 345454 2221 11
Q ss_pred HHHHHHHHHHhcC-------CChHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhcchhh----hhhhhhcCccce
Q 024641 82 AIEKAVVDALSQG-------LSSNDAAKQAQKEGAKAAKLAKRQAKRIIGPIIAAGWDF----FEAIYYGGTITE 145 (265)
Q Consensus 82 A~e~AL~da~~qG-------ls~~eaAk~Aqk~g~kAAKlA~rQAkRI~GPiissgWDf----FEalYyGGt~tE 145 (265)
.+.+.|+. ..| .+..|..+.| +.++..|+++..+.=+-++--|++-.-. .|++.+||.+.|
T Consensus 236 ~l~~~l~~--~~Gl~~~~gs~d~reV~~~a-~~GD~~A~~ald~~~~~lak~I~~l~~~L~gdpD~IVlgGGI~~ 307 (358)
T PRK03011 236 ELKKKLVG--KGGLVAYLGTNDAREVEKRI-EEGDEKAKLVYEAMAYQIAKEIGAMAAVLKGKVDAIVLTGGLAY 307 (358)
T ss_pred HHHHHHHh--ccCcccccCCCCHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEeCcccc
Confidence 22222222 112 3445544433 4456666665544333333333333223 488999888765
No 90
>COG2064 TadC Flp pilus assembly protein TadC [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=22.30 E-value=3.6e+02 Score=22.98 Aligned_cols=76 Identities=28% Similarity=0.230 Sum_probs=49.7
Q ss_pred EeechhHHHHHHHHHHHHHHHHHH-------HhcCCChHHHHHHHHHHH----HHHHHHHHHHhhhhhcchh--------
Q 024641 67 FYNIRAAHVERARNVAIEKAVVDA-------LSQGLSSNDAAKQAQKEG----AKAAKLAKRQAKRIIGPII-------- 127 (265)
Q Consensus 67 ~ynIRs~hvE~~R~~A~e~AL~da-------~~qGls~~eaAk~Aqk~g----~kAAKlA~rQAkRI~GPii-------- 127 (265)
.=+|...+.++-|++-+++.+.++ ...|++..||.+.-.++- .++-+.+..-++-=.|..+
T Consensus 155 ~p~i~~~~~~~~r~~~i~~~~p~~l~~~~~~~~~G~~l~~al~~va~~~~~~~~l~~~~~~~~~~~~~g~~~~~al~~~~ 234 (320)
T COG2064 155 LPFILFSLALKKRLKEIARELPDFLRLMAVCLEAGLSLADALKRVADELYGQRILAEELARTTAELSLGLSIEEALIRLA 234 (320)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCCHHHHHHHHHhcccCChHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 345667777777888887777665 457999999999877764 5555555444444444433
Q ss_pred ---------hcchhhhhhhhhcCc
Q 024641 128 ---------AAGWDFFEAIYYGGT 142 (265)
Q Consensus 128 ---------ssgWDfFEalYyGGt 142 (265)
..-++..+++=+||.
T Consensus 235 ~~~~~~~~~~~~~~l~~~~~~g~~ 258 (320)
T COG2064 235 VRLGSDEVKRVVSLLTQALESGGS 258 (320)
T ss_pred HHhCCHHHHHHHHHHHHHHHhcCC
Confidence 445556666666665
No 91
>cd07197 nitrilase Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes. This superfamily (also known as the C-N hydrolase superfamily) contains hydrolases that break carbon-nitrogen bonds; it includes nitrilases, cyanide dihydratases, aliphatic amidases, N-terminal amidases, beta-ureidopropionases, biotinidases, pantotheinase, N-carbamyl-D-amino acid amidohydrolases, the glutaminase domain of glutamine-dependent NAD+ synthetase, apolipoprotein N-acyltransferases, and N-carbamoylputrescine amidohydrolases, among others. These enzymes depend on a Glu-Lys-Cys catalytic triad, and work through a thiol acylenzyme intermediate. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. These oligomers include dimers, tetramers, hexamers, octamers, tetradecamers, octadecamers, as well as variable length helical arrangements and homo-oligomeric spirals. These proteins have roles in vitamin and
Probab=22.27 E-value=81 Score=25.63 Aligned_cols=29 Identities=24% Similarity=0.443 Sum_probs=19.5
Q ss_pred CceeeeeeeccCCceee-eeeecceEEEEe
Q 024641 40 GKFTILNCFDMGSGTVA-CGVKEGVKLYFY 68 (265)
Q Consensus 40 GkFT~~nCFDmgsGtlA-CavKEGVKLY~y 68 (265)
+++.++-|+|+=...++ ..++.|+.|.++
T Consensus 136 ~~ig~~IC~d~~~~~~~~~~~~~g~dli~~ 165 (253)
T cd07197 136 GKIGLLICYDLRFPELARELALKGADIILV 165 (253)
T ss_pred ceEEEEEEecCCCcHHHHHHHHCCCcEEEE
Confidence 67777888887666543 345677777765
No 92
>PRK00302 lnt apolipoprotein N-acyltransferase; Reviewed
Probab=22.11 E-value=88 Score=29.72 Aligned_cols=49 Identities=24% Similarity=0.297 Sum_probs=36.0
Q ss_pred cCceeeeeeeccCCceee-eeeecceEEEEe--e-----ch---hHHHHHHHHHHHHHHH
Q 024641 39 SGKFTILNCFDMGSGTVA-CGVKEGVKLYFY--N-----IR---AAHVERARNVAIEKAV 87 (265)
Q Consensus 39 SGkFT~~nCFDmgsGtlA-CavKEGVKLY~y--n-----IR---s~hvE~~R~~A~e~AL 87 (265)
.+|+-.+-|+|.-...+. ..+++|+++.++ | .. .-|..++|-||+|+-.
T Consensus 372 ~~~ig~~ICyE~~fpe~~r~~~~~ga~~lv~~snd~Wf~~~~~~~qh~~~~~~RAiEng~ 431 (505)
T PRK00302 372 GLKLAPLICYEIIFPEEVRANVRQGADLLLNISNDAWFGDSIGPYQHFQMARMRALELGR 431 (505)
T ss_pred CceEEEEEeehhcChHHHHhhccCCCCEEEEccchhhcCCCCchHHHHHHHHHHHHHhCC
Confidence 467889999998776554 556789999886 3 22 2588888999888643
No 93
>PTZ00493 phosphomethylpyrimidine kinase; Provisional
Probab=22.02 E-value=2.3e+02 Score=26.64 Aligned_cols=58 Identities=14% Similarity=0.060 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhcchhhhhhhhhcCccc
Q 024641 81 VAIEKAVVDALSQGLSSNDAAKQAQKEGAKAAKLAKRQAKRIIGPIIAAGWDFFEAIYYGGTIT 144 (265)
Q Consensus 81 ~A~e~AL~da~~qGls~~eaAk~Aqk~g~kAAKlA~rQAkRI~GPiissgWDfFEalYyGGt~t 144 (265)
-.+-.||+..+.+|.+..+|.+.|+.--.+|-+.+.+.-+.. + +.+++.++...=++|
T Consensus 252 c~fASAIAa~LA~G~~l~~Av~~A~~fv~~aI~~s~~~g~g~-~-----~v~~~~~~~~~~~~~ 309 (321)
T PTZ00493 252 CTLSTAIACYLAKKHNILQSCIESKKYIYNCIRYAYPFGSKS-Q-----GLNHLKASQELPTFT 309 (321)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhcCCCC-C-----CCCHHHHhccCCCcc
Confidence 468899999999999999999999988888877765432211 2 236666665444443
No 94
>TIGR03207 cyc_hxne_CoA_dh cyclohexanecarboxyl-CoA dehydrogenase. Cyclohex-1-ene-1carboxyl-CoA is an intermediate in the anaerobic degradation of benzoyl-CoA derived from varioius aromatic compounds, in Rhodopseudomonas palustris but not Thauera aromatica. The aliphatic compound cyclohexanecarboxylate, can be converted to the same intermediate in two steps. The first step is its ligation to coenzyme A. The second is the action of this enzyme, cyclohexanecarboxyl-CoA dehydrogenase.
Probab=21.86 E-value=5.3e+02 Score=22.91 Aligned_cols=47 Identities=17% Similarity=-0.023 Sum_probs=31.7
Q ss_pred HhcCCChHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhcchhhhhhhh
Q 024641 91 LSQGLSSNDAAKQAQKEGAKAAKLAKRQAKRIIGPIIAAGWDFFEAIY 138 (265)
Q Consensus 91 ~~qGls~~eaAk~Aqk~g~kAAKlA~rQAkRI~GPiissgWDfFEalY 138 (265)
+.+|.+....+-.|+-...++|..+.++|-+|.|.. +--+|-+|-+|
T Consensus 301 ~~~~~~~~~~~~~aK~~~~~~a~~v~~~a~~v~Gg~-g~~~~~l~r~~ 347 (372)
T TIGR03207 301 KDHGLPHTSEAAMCKWWAPKLAYDVIHQCLLTHGHG-GYDRGDMEQRL 347 (372)
T ss_pred HhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcCC-cCCCchHHHHH
Confidence 446655444455666677788888899999999983 34455555554
No 95
>PF06134 RhaA: L-rhamnose isomerase (RhaA); InterPro: IPR009308 This family consists of several bacterial L-rhamnose isomerase proteins (5.3.1.14 from EC). This enzyme interconverts L-rhamnose and L-rhamnulose. In some species, including Escherichia coli, this is the first step in rhamnose catabolism. Sequential steps are catalyzed by rhamnulose kinase (rhaB), then rhamnulose-1-phosphate aldolase (rhaD) to yield glycerone phosphate and (S)-lactaldehyde. ; GO: 0008740 L-rhamnose isomerase activity, 0030145 manganese ion binding, 0019299 rhamnose metabolic process; PDB: 1DE5_A 1D8W_D 1DE6_B 3P14_B 3UU0_B.
Probab=21.75 E-value=1e+02 Score=30.84 Aligned_cols=55 Identities=38% Similarity=0.619 Sum_probs=38.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHH-Hhhhhhcchhhcchhhh
Q 024641 72 AAHVERARNVAIEKAVVDALSQGLSSNDAAKQAQKEGAKAAKLAKR-QAKRIIGPIIAAGWDFF 134 (265)
Q Consensus 72 s~hvE~~R~~A~e~AL~da~~qGls~~eaAk~Aqk~g~kAAKlA~r-QAkRI~GPiissgWDfF 134 (265)
++-|--+| ++++||..|+ |-|.++-|+||.+|+--+++|.. ++|.. | +.+.||-|
T Consensus 335 aAwviG~r--n~qKAll~AL---L~p~~~L~~~e~~gd~t~rlAl~Ee~K~~--P-~gaVwd~y 390 (417)
T PF06134_consen 335 AAWVIGTR--NMQKALLKAL---LEPTEALKEAEDEGDFTERLALLEEFKSL--P-FGAVWDYY 390 (417)
T ss_dssp HHHHHHHH--HHHHHHHHHH---TS-HHHHHHHHCTT-HHHHHHHHHHHCCS--S-HHHHHHHH
T ss_pred HHHHHHHH--HHHHHHHHHH---CCCHHHHHHHHHcCCHHHHHHHHHHHhcC--C-HHHHHHHH
Confidence 45555544 5788998888 67999999999999999999865 44543 2 44567755
No 96
>cd07571 ALP_N-acyl_transferase Apolipoprotein N-acyl transferase (class 9 nitrilases). ALP N-acyl transferase (Lnt), is an essential membrane-bound enzyme in gram-negative bacteria, which catalyzes the N-acylation of apolipoproteins, the final step in lipoprotein maturation. This is a reverse amidase (i.e. condensation) reaction. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 9.
Probab=21.61 E-value=1e+02 Score=26.71 Aligned_cols=29 Identities=17% Similarity=0.256 Sum_probs=20.4
Q ss_pred CceeeeeeeccCCcee-eeeeecceEEEEe
Q 024641 40 GKFTILNCFDMGSGTV-ACGVKEGVKLYFY 68 (265)
Q Consensus 40 GkFT~~nCFDmgsGtl-ACavKEGVKLY~y 68 (265)
++|-++-|+|+-.--+ .-.+++|+.+.+.
T Consensus 153 ~r~g~~IC~D~~fpe~~r~~~~~ga~iil~ 182 (270)
T cd07571 153 VRVGPLICYESIFPELVRDAVRQGADLLVN 182 (270)
T ss_pred ceEEEEEEeeeeChHHHHhhcccCCCEEEE
Confidence 5888888888766544 3445678888775
No 97
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=21.56 E-value=1.5e+02 Score=27.84 Aligned_cols=67 Identities=24% Similarity=0.323 Sum_probs=43.8
Q ss_pred ccccCceeeeeeec----cCCceeeeeeecceEEEEeechhHHHHHHHHH---------------HHHHH-HHHHHhcCC
Q 024641 36 SSQSGKFTILNCFD----MGSGTVACGVKEGVKLYFYNIRAAHVERARNV---------------AIEKA-VVDALSQGL 95 (265)
Q Consensus 36 sSkSGkFT~~nCFD----mgsGtlACavKEGVKLY~ynIRs~hvE~~R~~---------------A~e~A-L~da~~qGl 95 (265)
.|-|||.|++-|.. .-+|++.-. |..++.-. ++.+.|++ ++||- |.--.-.|+
T Consensus 36 pSGSGKSTlLRclN~LE~~~~G~I~i~---g~~~~~~~----~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~ 108 (240)
T COG1126 36 PSGSGKSTLLRCLNGLEEPDSGSITVD---GEDVGDKK----DILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKL 108 (240)
T ss_pred CCCCCHHHHHHHHHCCcCCCCceEEEC---CEeccchh----hHHHHHHhcCeecccccccccchHHHHHHhhhHHHcCC
Confidence 68899999999986 467877543 33332211 66666654 45553 334456889
Q ss_pred ChHHHHHHHHHHHH
Q 024641 96 SSNDAAKQAQKEGA 109 (265)
Q Consensus 96 s~~eaAk~Aqk~g~ 109 (265)
+.+||-+.|.+.=+
T Consensus 109 ~k~eA~~~A~~lL~ 122 (240)
T COG1126 109 SKAEAREKALELLE 122 (240)
T ss_pred CHHHHHHHHHHHHH
Confidence 99998888876533
No 98
>PRK08573 phosphomethylpyrimidine kinase; Provisional
Probab=21.28 E-value=1.8e+02 Score=27.66 Aligned_cols=65 Identities=23% Similarity=0.288 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhc--------chhhhhhhhhcCccce
Q 024641 80 NVAIEKAVVDALSQGLSSNDAAKQAQKEGAKAAKLAKRQAKRIIGPIIAA--------GWDFFEAIYYGGTITE 145 (265)
Q Consensus 80 ~~A~e~AL~da~~qGls~~eaAk~Aqk~g~kAAKlA~rQAkRI~GPiiss--------gWDfFEalYyGGt~tE 145 (265)
=.+.-.++..++.+|+++.||++.|+....++.+.+.+..+. .+|+... -|+..|.|...-.+.|
T Consensus 210 GDaFsAa~aa~l~~G~~l~eAl~~A~~~~~~al~~~~~~g~g-~~~~~~~~~~~~~~~~~~~~~~l~~a~~~l~ 282 (448)
T PRK08573 210 GCSFSAAIAAGLAKGLDPEEAIKTAKKFITMAIKYGVKIGKG-HCPVNPMAWIEIPAERWRAYEELEEALEEIE 282 (448)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhccCCC-CCCcchhHHhhchHHHHHHHHHHHHHHHHHH
Confidence 367888999999999999999999999888888766543332 3555442 3477777766655543
No 99
>COG3134 Predicted outer membrane lipoprotein [Function unknown]
Probab=21.26 E-value=32 Score=30.84 Aligned_cols=34 Identities=38% Similarity=0.640 Sum_probs=16.6
Q ss_pred ccccccccccccccccccchhhhccccccccccc
Q 024641 152 GTLFGAYAGGFLGEERLGRFGYLVGSHLGSWAGG 185 (265)
Q Consensus 152 GTL~Gty~GGf~GE~RlGr~GYLvGShlGSWvGg 185 (265)
||.+|+.+||.+|.|-=|--|-=+..--|...||
T Consensus 73 Gt~iGAv~GGl~G~Q~GgG~Gk~~aTvAGAv~GG 106 (179)
T COG3134 73 GSVLGAVAGGVIGHQFGGGRGKDVATVAGALGGG 106 (179)
T ss_pred hhhhHHHhhhhccccccCCCcchhhhhhhhhccc
Confidence 5556666666666654443333333333333344
No 100
>PF15459 RRP14: 60S ribosome biogenesis protein Rrp14
Probab=21.16 E-value=1e+02 Score=23.06 Aligned_cols=20 Identities=40% Similarity=0.429 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 024641 102 KQAQKEGAKAAKLAKRQAKR 121 (265)
Q Consensus 102 k~Aqk~g~kAAKlA~rQAkR 121 (265)
++.++...+.+|..+++|||
T Consensus 39 ~~~k~~~Kk~tKe~~K~aKr 58 (64)
T PF15459_consen 39 KQWKKAAKKQTKEESKKAKR 58 (64)
T ss_pred HHHHHHHHHhhHHHHHHHHH
Confidence 55555556666666666665
No 101
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=21.10 E-value=93 Score=25.67 Aligned_cols=25 Identities=36% Similarity=0.254 Sum_probs=14.9
Q ss_pred HhccccccccCceeeeeeeccCCce
Q 024641 30 LVGEDASSQSGKFTILNCFDMGSGT 54 (265)
Q Consensus 30 LVGee~sSkSGkFT~~nCFDmgsGt 54 (265)
++..+...++..-..+-|.|||.|-
T Consensus 14 ~~~~~~~~~~~~~g~lL~de~GlGK 38 (299)
T PF00176_consen 14 LVEEYPNSESPPRGGLLADEMGLGK 38 (299)
T ss_dssp ----TTSSSTTT-EEEE---TTSSH
T ss_pred hhhcccccccCCCCEEEEECCCCCc
Confidence 6777778888888999999999994
No 102
>cd01941 YeiC_kinase_like YeiC-like sugar kinase. Found in eukaryotes and bacteria, YeiC-like kinase is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=21.04 E-value=2e+02 Score=23.94 Aligned_cols=31 Identities=29% Similarity=0.326 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 024641 81 VAIEKAVVDALSQGLSSNDAAKQAQKEGAKA 111 (265)
Q Consensus 81 ~A~e~AL~da~~qGls~~eaAk~Aqk~g~kA 111 (265)
.+.--++.-++.+|+++.+|.+.|...++.+
T Consensus 255 Daf~a~~~~~l~~g~~~~~al~~a~~~Aa~~ 285 (288)
T cd01941 255 DAFVAGLVAGLLEGMSLDDSLRFAQAAAALT 285 (288)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 6788899999999999999999998877665
No 103
>COG3140 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.03 E-value=1.5e+02 Score=22.72 Aligned_cols=24 Identities=25% Similarity=0.502 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHH
Q 024641 80 NVAIEKAVVDALSQGLSSNDAAKQA 104 (265)
Q Consensus 80 ~~A~e~AL~da~~qGls~~eaAk~A 104 (265)
|.|+|+ ++...++|||..||.+..
T Consensus 14 Q~AVE~-Iq~lMaeGmSsGEAIa~V 37 (60)
T COG3140 14 QKAVER-IQELMAEGMSSGEAIALV 37 (60)
T ss_pred HHHHHH-HHHHHHccccchhHHHHH
Confidence 677776 688999999999997654
No 104
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=20.92 E-value=62 Score=27.81 Aligned_cols=41 Identities=32% Similarity=0.421 Sum_probs=28.8
Q ss_pred eeeccCCce--eee-eeecce-EEEEeechhHHHHHHHHHHHHHH
Q 024641 46 NCFDMGSGT--VAC-GVKEGV-KLYFYNIRAAHVERARNVAIEKA 86 (265)
Q Consensus 46 nCFDmgsGt--lAC-avKEGV-KLY~ynIRs~hvE~~R~~A~e~A 86 (265)
.+.|+|||| ++. +.|.|. +++...|-...++.+|+.+-.+.
T Consensus 122 ~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~ 166 (250)
T PRK00517 122 TVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNG 166 (250)
T ss_pred EEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcC
Confidence 699999987 222 234555 48889998888888887654433
No 105
>PF08989 DUF1896: Domain of unknown function (DUF1896); InterPro: IPR015082 This domain is found in a set of hypothetical bacterial proteins. ; PDB: 2APL_A.
Probab=20.91 E-value=1.7e+02 Score=25.46 Aligned_cols=30 Identities=23% Similarity=0.242 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 024641 78 ARNVAIEKAVVDALSQGLSSNDAAKQAQKE 107 (265)
Q Consensus 78 ~R~~A~e~AL~da~~qGls~~eaAk~Aqk~ 107 (265)
.|...--.|..+|+.+|.|+.+|-..|-++
T Consensus 35 ~Rad~Aa~aYe~A~~~G~~~~~A~e~A~~v 64 (144)
T PF08989_consen 35 ERADMAAEAYEQAVRSGYSHDEAEEIAMEV 64 (144)
T ss_dssp HHHHHHHHHHHHHHHHT--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 455556678999999999999988887764
No 106
>PRK10294 6-phosphofructokinase 2; Provisional
Probab=20.91 E-value=2e+02 Score=24.75 Aligned_cols=32 Identities=16% Similarity=0.163 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Q 024641 81 VAIEKAVVDALSQGLSSNDAAKQAQKEGAKAA 112 (265)
Q Consensus 81 ~A~e~AL~da~~qGls~~eaAk~Aqk~g~kAA 112 (265)
.+.-.++..++.+|+++.+|+|.|...++.+.
T Consensus 256 Daf~ag~l~~l~~g~~~~~al~~a~a~aa~~v 287 (309)
T PRK10294 256 DSMVGAMTLKLAENASLEEMVRFGVAAGSAAT 287 (309)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence 78899999999999999999999877665543
No 107
>PRK08176 pdxK pyridoxal-pyridoxamine kinase/hydroxymethylpyrimidine kinase; Reviewed
Probab=20.85 E-value=2.4e+02 Score=24.72 Aligned_cols=38 Identities=18% Similarity=0.183 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHH
Q 024641 81 VAIEKAVVDALSQGLSSNDAAKQAQKEGAKAAKLAKRQ 118 (265)
Q Consensus 81 ~A~e~AL~da~~qGls~~eaAk~Aqk~g~kAAKlA~rQ 118 (265)
.+.-.++..++.+|++..||.+.|++--.++-+.+.+.
T Consensus 233 D~faa~~~a~l~~g~~l~~Av~~A~~~v~~~i~~t~~~ 270 (281)
T PRK08176 233 DLFCAELVSGLLKGKALTDAAHRAGLRVLEVMRYTQQA 270 (281)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 67888999999999999999999999888887776543
No 108
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=20.83 E-value=98 Score=25.75 Aligned_cols=49 Identities=29% Similarity=0.448 Sum_probs=35.7
Q ss_pred cCCceeeeeeecceEEEEeechhHHHHHHHHHHHHHHHHHHHhcCCChHH
Q 024641 50 MGSGTVACGVKEGVKLYFYNIRAAHVERARNVAIEKAVVDALSQGLSSND 99 (265)
Q Consensus 50 mgsGtlACavKEGVKLY~ynIRs~hvE~~R~~A~e~AL~da~~qGls~~e 99 (265)
||.|--++...-|.+.-+|++...-.++++. .+++.|...+..|.-.++
T Consensus 10 mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~-~i~~~l~~~~~~~~~~~~ 58 (180)
T PF02737_consen 10 MGRGIAALFARAGYEVTLYDRSPEALERARK-RIERLLDRLVRKGRLSQE 58 (180)
T ss_dssp HHHHHHHHHHHTTSEEEEE-SSHHHHHHHHH-HHHHHHHHHHHTTTTTHH
T ss_pred HHHHHHHHHHhCCCcEEEEECChHHHHhhhh-HHHHHHhhhhhhccchhh
Confidence 5555556777779999999999999999865 456677777777765533
No 109
>PTZ00347 phosphomethylpyrimidine kinase; Provisional
Probab=20.70 E-value=1.3e+02 Score=28.76 Aligned_cols=36 Identities=19% Similarity=0.175 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHH
Q 024641 81 VAIEKAVVDALSQGLSSNDAAKQAQKEGAKAAKLAK 116 (265)
Q Consensus 81 ~A~e~AL~da~~qGls~~eaAk~Aqk~g~kAAKlA~ 116 (265)
.++-.++..++.+|+++.||++.|+.--..+-+.+.
T Consensus 445 D~fsaaiaa~la~G~~l~eAv~~A~~~v~~~i~~~~ 480 (504)
T PTZ00347 445 CTLASAISSFLARGYTVPDAVERAIGYVHEAIVRSC 480 (504)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 678899999999999999999999888777777664
No 110
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=20.62 E-value=99 Score=27.50 Aligned_cols=57 Identities=23% Similarity=0.401 Sum_probs=45.2
Q ss_pred ceeeeeeeccCCceeeeeeecceEEEEeechhHHHHHHHHHHHHHHHHHHHhcCCChH
Q 024641 41 KFTILNCFDMGSGTVACGVKEGVKLYFYNIRAAHVERARNVAIEKAVVDALSQGLSSN 98 (265)
Q Consensus 41 kFT~~nCFDmgsGtlACavKEGVKLY~ynIRs~hvE~~R~~A~e~AL~da~~qGls~~ 98 (265)
|-.++-+=-||+|--.+..+-|.++.+|++...-+++++++ +++.|..+++.|.-..
T Consensus 7 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~-i~~~~~~~~~~g~~~~ 63 (286)
T PRK07819 7 RVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNR-IEKSLERAVSRGKLTE 63 (286)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHH-HHHHHHHHHhcccCCh
Confidence 45566666788887777788999999999999999988876 4568888888886533
No 111
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=20.51 E-value=82 Score=27.84 Aligned_cols=45 Identities=13% Similarity=0.147 Sum_probs=33.0
Q ss_pred cCCceeeeeeecceEEEEeechhHHHHHHHHHHHHHHHHHHHhcCC
Q 024641 50 MGSGTVACGVKEGVKLYFYNIRAAHVERARNVAIEKAVVDALSQGL 95 (265)
Q Consensus 50 mgsGtlACavKEGVKLY~ynIRs~hvE~~R~~A~e~AL~da~~qGl 95 (265)
||++--.+..+.|.++.+|++....+++++.+. +..|...+..|.
T Consensus 13 mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~-~~~l~~l~~~g~ 57 (308)
T PRK06129 13 IGRAWAIVFARAGHEVRLWDADPAAAAAAPAYI-AGRLEDLAAFDL 57 (308)
T ss_pred HHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHH-HHHHHHHHHcCC
Confidence 444444455678999999999998888888764 666666666664
No 112
>PRK09813 fructoselysine 6-kinase; Provisional
Probab=20.46 E-value=2.2e+02 Score=23.76 Aligned_cols=32 Identities=16% Similarity=0.092 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Q 024641 81 VAIEKAVVDALSQGLSSNDAAKQAQKEGAKAA 112 (265)
Q Consensus 81 ~A~e~AL~da~~qGls~~eaAk~Aqk~g~kAA 112 (265)
.+.--++..++.+|+++.||.+.|...++.+.
T Consensus 223 DaF~ag~i~~~~~g~~~~~al~~a~~~aa~~~ 254 (260)
T PRK09813 223 DSFIAGFLCGWLAGMTLPQAMAQGTACAAKTI 254 (260)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 68888999999999999999999987766543
Done!