Query 024642
Match_columns 265
No_of_seqs 187 out of 1315
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 06:17:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024642.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024642hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11272 putative DMT superfam 99.7 1.9E-16 4E-21 145.1 16.5 138 127-264 10-154 (292)
2 TIGR00688 rarD rarD protein. T 99.7 4.1E-16 8.9E-21 139.6 16.9 129 125-254 2-143 (256)
3 PRK11689 aromatic amino acid e 99.7 3.4E-16 7.4E-21 143.7 15.2 131 124-255 3-139 (295)
4 PRK15430 putative chlorampheni 99.7 1.4E-15 3E-20 139.8 17.8 133 120-253 3-145 (296)
5 PRK11453 O-acetylserine/cystei 99.7 4.5E-15 9.7E-20 136.4 16.4 125 127-254 6-133 (299)
6 PLN00411 nodulin MtN21 family 99.6 1.7E-14 3.7E-19 137.1 16.8 132 123-254 11-157 (358)
7 TIGR00950 2A78 Carboxylate/Ami 99.6 3.6E-14 7.8E-19 126.1 13.1 118 137-255 1-121 (260)
8 PF00892 EamA: EamA-like trans 99.5 4.5E-13 9.7E-18 104.9 11.9 117 135-252 1-125 (126)
9 PRK10532 threonine and homoser 99.5 1.1E-12 2.4E-17 120.3 16.0 127 123-254 10-138 (293)
10 COG2510 Predicted membrane pro 99.4 4E-12 8.6E-17 104.7 10.4 128 125-252 3-138 (140)
11 TIGR00817 tpt Tpt phosphate/ph 99.3 3.2E-11 7E-16 110.6 14.8 123 142-264 19-149 (302)
12 PTZ00343 triose or hexose phos 99.3 8.1E-11 1.8E-15 111.2 17.1 124 141-264 65-198 (350)
13 TIGR00950 2A78 Carboxylate/Ami 99.2 1.3E-09 2.9E-14 96.7 17.0 126 124-249 127-260 (260)
14 COG0697 RhaT Permeases of the 99.2 1.8E-09 3.9E-14 95.7 16.9 134 123-256 5-146 (292)
15 PF13536 EmrE: Multidrug resis 99.1 8.8E-10 1.9E-14 87.9 12.3 97 158-255 2-108 (113)
16 TIGR03340 phn_DUF6 phosphonate 99.1 1.9E-09 4.1E-14 98.2 15.9 126 127-254 3-136 (281)
17 COG2962 RarD Predicted permeas 99.1 4E-09 8.7E-14 97.4 15.0 132 123-255 5-146 (293)
18 PRK10532 threonine and homoser 98.9 6.2E-08 1.3E-12 89.0 17.4 130 124-254 147-282 (293)
19 PRK11689 aromatic amino acid e 98.9 6.8E-08 1.5E-12 88.8 16.1 128 124-254 155-288 (295)
20 PRK11272 putative DMT superfam 98.9 1.3E-07 2.8E-12 86.7 16.5 130 124-254 149-286 (292)
21 TIGR00776 RhaT RhaT L-rhamnose 98.8 5.6E-08 1.2E-12 89.7 13.5 126 126-254 2-137 (290)
22 PLN00411 nodulin MtN21 family 98.8 2.1E-07 4.5E-12 88.8 16.5 130 124-253 188-328 (358)
23 KOG4510 Permease of the drug/m 98.7 4.7E-09 1E-13 96.3 0.2 127 124-254 37-170 (346)
24 PRK11453 O-acetylserine/cystei 98.6 2.4E-06 5.1E-11 78.6 17.0 130 124-253 142-287 (299)
25 TIGR03340 phn_DUF6 phosphonate 98.6 2.8E-07 6E-12 84.0 10.0 128 124-251 143-281 (281)
26 TIGR00817 tpt Tpt phosphate/ph 98.6 1.4E-06 3E-11 80.0 13.5 130 124-253 144-293 (302)
27 COG0697 RhaT Permeases of the 98.5 7.9E-06 1.7E-10 72.4 17.7 130 124-254 153-288 (292)
28 PF06027 DUF914: Eukaryotic pr 98.5 3.4E-06 7.3E-11 80.0 14.9 119 135-253 23-151 (334)
29 PRK15430 putative chlorampheni 98.5 5E-06 1.1E-10 76.5 15.5 127 129-255 153-287 (296)
30 TIGR00776 RhaT RhaT L-rhamnose 98.4 7.5E-06 1.6E-10 75.6 13.0 128 124-253 151-288 (290)
31 PTZ00343 triose or hexose phos 98.3 3.2E-05 7E-10 73.2 16.9 129 124-252 193-347 (350)
32 PF03151 TPT: Triose-phosphate 98.3 5.5E-05 1.2E-09 62.0 15.8 125 126-250 1-150 (153)
33 PRK15051 4-amino-4-deoxy-L-ara 98.2 4.9E-05 1.1E-09 61.1 13.4 61 192-252 47-108 (111)
34 PRK02971 4-amino-4-deoxy-L-ara 98.1 9.8E-05 2.1E-09 61.0 13.7 119 125-255 2-124 (129)
35 COG5006 rhtA Threonine/homoser 98.1 0.00011 2.5E-09 67.3 14.0 126 126-256 13-140 (292)
36 COG5006 rhtA Threonine/homoser 97.9 0.00037 8.1E-09 63.9 14.0 127 123-249 146-278 (292)
37 PF08449 UAA: UAA transporter 97.7 0.0018 4E-08 59.8 15.1 103 152-254 31-137 (303)
38 PF06027 DUF914: Eukaryotic pr 97.6 0.0016 3.5E-08 61.9 14.4 132 123-254 166-306 (334)
39 PRK10650 multidrug efflux syst 97.6 0.0032 6.8E-08 50.8 13.2 71 181-251 34-106 (109)
40 PRK10452 multidrug efflux syst 97.3 0.0059 1.3E-07 50.0 11.5 68 188-255 36-105 (120)
41 PRK11431 multidrug efflux syst 97.3 0.0059 1.3E-07 48.9 11.2 72 182-253 29-102 (105)
42 PF08449 UAA: UAA transporter 97.2 0.019 4E-07 53.1 16.1 128 126-253 155-297 (303)
43 PF04142 Nuc_sug_transp: Nucle 97.2 0.002 4.4E-08 58.5 9.4 78 178-255 13-91 (244)
44 COG2076 EmrE Membrane transpor 97.2 0.0046 1E-07 49.7 10.1 70 184-253 32-103 (106)
45 PRK09541 emrE multidrug efflux 97.2 0.0069 1.5E-07 48.8 11.2 64 191-254 39-104 (110)
46 PF10639 UPF0546: Uncharacteri 97.2 0.0018 3.8E-08 52.7 7.5 108 131-251 2-112 (113)
47 PF06800 Sugar_transport: Suga 97.0 0.027 5.8E-07 52.2 14.5 123 124-249 137-267 (269)
48 KOG2765 Predicted membrane pro 96.8 0.0015 3.2E-08 62.9 4.9 80 186-265 163-252 (416)
49 TIGR00688 rarD rarD protein. T 96.7 0.045 9.8E-07 48.9 13.5 98 129-228 150-254 (256)
50 KOG2234 Predicted UDP-galactos 96.6 0.11 2.4E-06 49.7 15.4 128 125-252 15-163 (345)
51 COG2962 RarD Predicted permeas 96.2 0.33 7.2E-06 45.5 15.7 123 131-255 154-285 (293)
52 PF05653 Mg_trans_NIPA: Magnes 96.1 0.035 7.5E-07 52.0 9.0 118 123-255 5-124 (300)
53 PF04657 DUF606: Protein of un 96.0 0.5 1.1E-05 39.3 14.7 122 129-250 5-138 (138)
54 PRK13499 rhamnose-proton sympo 95.9 0.34 7.3E-06 46.5 15.2 131 123-253 172-341 (345)
55 PRK13499 rhamnose-proton sympo 95.8 0.31 6.7E-06 46.8 14.4 127 123-253 5-153 (345)
56 PF00893 Multi_Drug_Res: Small 95.8 0.074 1.6E-06 41.2 8.3 53 191-243 38-92 (93)
57 KOG4510 Permease of the drug/m 95.3 0.0096 2.1E-07 55.4 2.1 126 126-251 192-323 (346)
58 KOG2766 Predicted membrane pro 95.2 0.004 8.8E-08 57.5 -0.8 118 136-253 30-150 (336)
59 KOG1444 Nucleotide-sugar trans 94.7 1 2.3E-05 42.6 13.7 119 141-260 28-156 (314)
60 KOG1443 Predicted integral mem 93.9 0.2 4.3E-06 47.5 7.0 122 138-259 30-162 (349)
61 KOG1441 Glucose-6-phosphate/ph 93.4 0.28 6.1E-06 46.5 7.3 129 123-251 161-305 (316)
62 COG3238 Uncharacterized protei 93.1 5 0.00011 34.2 14.2 126 127-253 7-146 (150)
63 KOG1441 Glucose-6-phosphate/ph 93.0 0.069 1.5E-06 50.6 2.7 110 144-253 36-155 (316)
64 KOG4314 Predicted carbohydrate 92.7 0.16 3.4E-06 45.8 4.3 58 196-253 67-125 (290)
65 KOG3912 Predicted integral mem 91.7 1.2 2.7E-05 42.0 9.0 116 138-253 16-158 (372)
66 TIGR00803 nst UDP-galactose tr 91.1 0.36 7.7E-06 42.3 4.8 58 193-250 163-221 (222)
67 KOG4831 Unnamed protein [Funct 90.7 0.62 1.3E-05 37.8 5.3 111 128-252 6-124 (125)
68 KOG1581 UDP-galactose transpor 90.5 4.4 9.6E-05 38.5 11.5 128 123-250 170-310 (327)
69 KOG2765 Predicted membrane pro 90.0 2.8 6.1E-05 40.9 10.0 132 124-255 246-392 (416)
70 PRK02237 hypothetical protein; 89.7 6.2 0.00013 32.0 10.2 49 206-254 56-106 (109)
71 KOG2922 Uncharacterized conser 88.0 0.056 1.2E-06 51.2 -2.9 121 119-255 14-138 (335)
72 KOG1580 UDP-galactose transpor 87.8 5.8 0.00013 36.8 10.0 131 125-255 172-315 (337)
73 PF02694 UPF0060: Uncharacteri 87.6 11 0.00023 30.5 10.2 52 203-254 51-104 (107)
74 KOG1580 UDP-galactose transpor 86.0 1.2 2.6E-05 41.2 4.6 79 186-264 89-176 (337)
75 COG1742 Uncharacterized conser 84.6 11 0.00025 30.3 9.0 37 218-254 68-105 (109)
76 PF06800 Sugar_transport: Suga 80.4 26 0.00055 32.7 11.0 76 180-255 43-124 (269)
77 KOG1443 Predicted integral mem 77.8 47 0.001 31.9 11.9 128 124-251 163-313 (349)
78 COG4975 GlcU Putative glucose 76.1 2.2 4.9E-05 39.5 2.7 125 125-253 2-136 (288)
79 PF06379 RhaT: L-rhamnose-prot 75.0 69 0.0015 31.0 12.5 130 123-255 5-155 (344)
80 PF07857 DUF1632: CEO family ( 74.9 12 0.00026 34.5 7.2 57 120-176 178-246 (254)
81 PF07857 DUF1632: CEO family ( 73.5 14 0.00031 34.0 7.3 126 126-253 1-134 (254)
82 PF06123 CreD: Inner membrane 71.8 64 0.0014 32.0 11.8 25 150-174 322-346 (430)
83 COG3086 RseC Positive regulato 68.8 7.9 0.00017 33.0 4.2 48 202-249 68-115 (150)
84 PF04246 RseC_MucC: Positive r 68.1 7.8 0.00017 31.7 4.0 43 207-249 66-108 (135)
85 PRK11715 inner membrane protei 67.2 98 0.0021 30.8 12.0 48 126-176 307-354 (436)
86 KOG1581 UDP-galactose transpor 66.7 62 0.0014 30.9 10.0 103 152-254 50-156 (327)
87 COG4975 GlcU Putative glucose 63.8 1.1 2.3E-05 41.6 -2.1 127 124-251 151-283 (288)
88 KOG1582 UDP-galactose transpor 63.3 1E+02 0.0022 29.4 10.6 103 151-253 218-332 (367)
89 PRK10862 SoxR reducing system 62.3 11 0.00025 31.9 4.0 27 204-230 70-96 (154)
90 PF06570 DUF1129: Protein of u 60.2 1.2E+02 0.0026 26.6 10.3 18 129-146 89-106 (206)
91 KOG1444 Nucleotide-sugar trans 59.6 74 0.0016 30.4 9.2 127 125-251 157-298 (314)
92 PF12811 BaxI_1: Bax inhibitor 47.6 2.4E+02 0.0052 26.4 17.6 16 212-227 150-165 (274)
93 COG5070 VRG4 Nucleotide-sugar 45.4 1.4E+02 0.0031 27.7 8.3 109 142-250 172-293 (309)
94 KOG3817 Uncharacterized conser 42.3 1.5E+02 0.0032 29.2 8.3 83 136-218 200-287 (452)
95 KOG2766 Predicted membrane pro 39.9 41 0.00089 31.7 4.1 128 124-254 165-300 (336)
96 PF09586 YfhO: Bacterial membr 37.5 3.8E+02 0.0082 28.2 11.4 88 154-246 93-180 (843)
97 PF11947 DUF3464: Protein of u 36.1 1.7E+02 0.0036 25.1 6.9 23 59-81 5-27 (153)
98 KOG1582 UDP-galactose transpor 35.4 1.9E+02 0.0042 27.6 7.7 34 222-255 146-180 (367)
99 KOG3912 Predicted integral mem 34.8 4.2E+02 0.0091 25.5 10.9 126 124-250 175-331 (372)
100 COG5070 VRG4 Nucleotide-sugar 32.9 1.5E+02 0.0032 27.6 6.4 65 200-264 86-159 (309)
101 PF04342 DUF486: Protein of un 28.1 1.2E+02 0.0026 24.6 4.4 51 201-251 54-106 (108)
102 PF07168 Ureide_permease: Urei 26.8 11 0.00024 36.0 -1.9 105 131-235 2-126 (336)
103 COG3610 Uncharacterized conser 23.6 4.6E+02 0.01 22.3 10.6 40 155-194 4-43 (156)
104 KOG2322 N-methyl-D-aspartate r 23.0 6E+02 0.013 23.4 8.8 7 185-191 114-120 (237)
105 TIGR01129 secD protein-export 21.2 6.6E+02 0.014 24.5 9.1 15 229-243 294-308 (397)
106 TIGR00353 nrfE c-type cytochro 20.4 9.6E+02 0.021 24.8 15.1 23 127-149 305-327 (576)
107 PF05297 Herpes_LMP1: Herpesvi 20.1 34 0.00075 32.5 0.0 14 124-137 26-39 (381)
No 1
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.72 E-value=1.9e-16 Score=145.08 Aligned_cols=138 Identities=17% Similarity=0.304 Sum_probs=114.9
Q ss_pred HHHHHHHHHHHhhhHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHhhhc---CChhhHHHHHHHHHHHH-HHHHHHHHH
Q 024642 127 IFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWAR---DDVKTRNAGIELGLWVS-LGYFVEALG 202 (265)
Q Consensus 127 ~lllll~~llWGss~i~~K~~l~~isP~~l~~lRfllAallLl~~~~~~r---~~~r~~~~~~llGvll~-~~~~l~~~g 202 (265)
.+.+++..++||++++++|...++++|..++++|+++++++++++...++ .+++++......|.+.. ..+.+++.+
T Consensus 10 ~~~~~~~~~iWg~~~~~~K~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 89 (292)
T PRK11272 10 FGALFALYIIWGSTYLVIRIGVESWPPLMMAGVRFLIAGILLLAFLLLRGHPLPTLRQWLNAALIGLLLLAVGNGMVTVA 89 (292)
T ss_pred HHHHHHHHHHHhhHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788999999999999999999999999999999999988876543 24566777778888753 445677888
Q ss_pred H-hhcchhHHHHHHHhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhHhhcCCC-CC-Cccccc
Q 024642 203 L-LTSDAGRASFISLFTVIVVPLFDGMLGAIIPAHTWFGVLISALGVGMLECSGS-PP-SVSIFK 264 (265)
Q Consensus 203 L-~~tsa~~AavL~~l~Pvfv~lla~llker~s~~~~iGllLa~iGv~LL~~~G~-~~-~lGDll 264 (265)
. +++++++++++.++.|++++++++++|||+++++++|++++++|+.++..+++ +. ..||++
T Consensus 90 ~~~~~~a~~a~~l~~~~Pl~~~lla~~~~e~~~~~~~~~~~la~~Gv~ll~~~~~~~~~~~G~l~ 154 (292)
T PRK11272 90 EHQNVPSGIAAVVVATVPLFTLCFSRLFGIRTRKLEWLGIAIGLAGIVLLNSGGNLSGNPWGAIL 154 (292)
T ss_pred HHccCcHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHhHHHHhcCcccccchHHHHH
Confidence 8 89999999999999999999999888999999999999999999998865432 22 246653
No 2
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.71 E-value=4.1e-16 Score=139.64 Aligned_cols=129 Identities=15% Similarity=0.130 Sum_probs=107.9
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHhhhcC-----------Chhh-HHHHHHHHHHH
Q 024642 125 RSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARD-----------DVKT-RNAGIELGLWV 192 (265)
Q Consensus 125 ~g~lllll~~llWGss~i~~K~~l~~isP~~l~~lRfllAallLl~~~~~~r~-----------~~r~-~~~~~llGvll 192 (265)
+|++++++++++||++++++|. .++++|..+.++|+++++++++++...+++ ++++ +....+.|++.
T Consensus 2 ~g~~~~i~a~~~wg~~~~~~k~-~~~~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 80 (256)
T TIGR00688 2 KGIIVSLLASFLFGYMYYYSKL-LKPLPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLLI 80 (256)
T ss_pred CcHHHHHHHHHHHHHHHHHHHH-hccCCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHHH
Confidence 5788999999999999999998 567999999999999999888776532210 1222 23345667766
Q ss_pred HHHHHHHHHHHhhcchhHHHHHHHhHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHHhhHhhcC
Q 024642 193 SLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLECS 254 (265)
Q Consensus 193 ~~~~~l~~~gL~~tsa~~AavL~~l~Pvfv~lla~l-lker~s~~~~iGllLa~iGv~LL~~~ 254 (265)
...+.+++.|++++++++++++.+++|+++++++++ +|||++++++++++++++|+.++..+
T Consensus 81 ~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~ 143 (256)
T TIGR00688 81 GFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIVL 143 (256)
T ss_pred HHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 677788999999999999999999999999999987 79999999999999999999887543
No 3
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.70 E-value=3.4e-16 Score=143.69 Aligned_cols=131 Identities=15% Similarity=0.119 Sum_probs=102.8
Q ss_pred hHHHHHHHHHHHHHhhhHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHHHHHHHH-HHHHHHHHHH
Q 024642 124 IRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLWV-SLGYFVEALG 202 (265)
Q Consensus 124 ~~g~lllll~~llWGss~i~~K~~l~~isP~~l~~lRfllAallLl~~~~~~r~~~r~~~~~~llGvll-~~~~~l~~~g 202 (265)
.++++++++++++||++++++|.++++++|+.++++|+.+|+++++++...++. ++..+...+.|.+. ...+.+++.|
T Consensus 3 ~~~~l~~l~a~~~Wg~~~~~~k~~~~~~~P~~~~~~R~~~a~l~l~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~a 81 (295)
T PRK11689 3 QKATLIGLIAILLWSTMVGLIRGVSESLGPVGGAAMIYSVSGLLLLLTVGFPRL-RQFPKRYLLAGGLLFVSYEICLALS 81 (295)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHcccccc-ccccHHHHHHHhHHHHHHHHHHHHH
Confidence 567888999999999999999999999999999999999999998876432221 12222223333333 3333455566
Q ss_pred Hhh----cchhHHHHHHHhHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHHhhHhhcCC
Q 024642 203 LLT----SDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLECSG 255 (265)
Q Consensus 203 L~~----tsa~~AavL~~l~Pvfv~lla~l-lker~s~~~~iGllLa~iGv~LL~~~G 255 (265)
+++ +++++++++.+++|+++++++++ +|||+++++++|++++++|++++..++
T Consensus 82 ~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~ 139 (295)
T PRK11689 82 LGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGGD 139 (295)
T ss_pred HHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecCC
Confidence 654 57889999999999999999997 699999999999999999999887653
No 4
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.69 E-value=1.4e-15 Score=139.76 Aligned_cols=133 Identities=11% Similarity=0.105 Sum_probs=109.6
Q ss_pred hhhhhHHHHHHHHHHHHHhhhHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHhhhcC---------ChhhHHHHHHHHH
Q 024642 120 ASKKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARD---------DVKTRNAGIELGL 190 (265)
Q Consensus 120 m~~~~~g~lllll~~llWGss~i~~K~~l~~isP~~l~~lRfllAallLl~~~~~~r~---------~~r~~~~~~llGv 190 (265)
|.++.+|.+++++++++||.+++++|.. ++++|..+.++|++++.++++++...+++ +++++...+..+.
T Consensus 3 ~~~~~~g~~~~l~a~~~wg~~~~~~k~~-~~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (296)
T PRK15430 3 AKQTRQGVLLALAAYFIWGIAPAYFKLI-YYVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIFMLAVSAV 81 (296)
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHHHHHHHHH
Confidence 5566899999999999999999999985 68999999999999999888776643321 1222222222233
Q ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHhHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHHhhHhhc
Q 024642 191 WVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLEC 253 (265)
Q Consensus 191 ll~~~~~l~~~gL~~tsa~~AavL~~l~Pvfv~lla~l-lker~s~~~~iGllLa~iGv~LL~~ 253 (265)
.....+.+++.|++++++++++++.++.|+++.+++++ +|||+++++++|++++++|++++..
T Consensus 82 ~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~ 145 (296)
T PRK15430 82 LIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLW 145 (296)
T ss_pred HHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH
Confidence 34556788899999999999999999999999999987 6999999999999999999998864
No 5
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.65 E-value=4.5e-15 Score=136.41 Aligned_cols=125 Identities=18% Similarity=0.260 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHhhhHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHH-HHHHHHHHHHhh
Q 024642 127 IFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLWVS-LGYFVEALGLLT 205 (265)
Q Consensus 127 ~lllll~~llWGss~i~~K~~l~~isP~~l~~lRfllAallLl~~~~~~r~~~r~~~~~~llGvll~-~~~~l~~~gL~~ 205 (265)
.++.++++++||++++++|..+++++|..+.++|+++++++++++..++|.+++ .....|++.. ..+.+++.++++
T Consensus 6 ~l~~l~~~~~Wg~~~~~~k~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~~ 82 (299)
T PRK11453 6 GVLALLVVVVWGLNFVVIKVGLHNMPPLMLAGLRFMLVAFPAIFFVARPKVPLN---LLLGYGLTISFGQFAFLFCAINF 82 (299)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCchH---HHHHHHHHHHHHHHHHHHHHHHh
Confidence 456788899999999999999999999999999999998877766544333332 2333455433 234456788888
Q ss_pred -cchhHHHHHHHhHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHHhhHhhcC
Q 024642 206 -SDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLECS 254 (265)
Q Consensus 206 -tsa~~AavL~~l~Pvfv~lla~l-lker~s~~~~iGllLa~iGv~LL~~~ 254 (265)
.++++++++.+++|+++++++++ +|||+++++++|++++++|+.++..+
T Consensus 83 ~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~ 133 (299)
T PRK11453 83 GMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIED 133 (299)
T ss_pred cCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccc
Confidence 58899999999999999999987 79999999999999999999988754
No 6
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.62 E-value=1.7e-14 Score=137.12 Aligned_cols=132 Identities=16% Similarity=0.157 Sum_probs=114.8
Q ss_pred hhHHHHHHHHHHHHHhhhHHHHHHHhh-ccCHHHHHHHHHHHHHHHHHHHHhhh-c-C-----ChhhHHHHHHHHHHHHH
Q 024642 123 KIRSIFLLNVITIVYASDIPILKAAEE-IMHPASFCAVRFVMSAIPFLPFVFWA-R-D-----DVKTRNAGIELGLWVSL 194 (265)
Q Consensus 123 ~~~g~lllll~~llWGss~i~~K~~l~-~isP~~l~~lRfllAallLl~~~~~~-r-~-----~~r~~~~~~llGvll~~ 194 (265)
+.+.++.+++.-+..+...++.|.+++ .++|+.++++|+.+|+++++++.+.+ | + +++++....++|++...
T Consensus 11 ~~~~~~~~~~~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~~~~~~~~~~~l~l~g~~g~~ 90 (358)
T PLN00411 11 EAVFLTAMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSRSLPPLSVSILSKIGLLGFLGSM 90 (358)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHH
Confidence 578899999999999999999999987 89999999999999999999887643 1 1 24566777778877644
Q ss_pred HHHHHHHHHhhcchhHHHHHHHhHHHHHHHHHHHh-------cCcCcHHHHHHHHHHHHHhhHhhcC
Q 024642 195 GYFVEALGLLTSDAGRASFISLFTVIVVPLFDGML-------GAIIPAHTWFGVLISALGVGMLECS 254 (265)
Q Consensus 195 ~~~l~~~gL~~tsa~~AavL~~l~Pvfv~lla~ll-------ker~s~~~~iGllLa~iGv~LL~~~ 254 (265)
.+.+++.|++|+++++++++.+++|+++.++++++ +||+++++++|++++++|+.++...
T Consensus 91 ~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~ 157 (358)
T PLN00411 91 YVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFY 157 (358)
T ss_pred HHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHc
Confidence 55678899999999999999999999999999875 8999999999999999999987753
No 7
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.57 E-value=3.6e-14 Score=126.08 Aligned_cols=118 Identities=13% Similarity=0.134 Sum_probs=100.6
Q ss_pred HhhhHHHHHHHhh-ccCHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHHHHHHHH-HHHHHHHHHHHhhcchhHHHHH
Q 024642 137 YASDIPILKAAEE-IMHPASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLWV-SLGYFVEALGLLTSDAGRASFI 214 (265)
Q Consensus 137 WGss~i~~K~~l~-~isP~~l~~lRfllAallLl~~~~~~r~~~r~~~~~~llGvll-~~~~~l~~~gL~~tsa~~AavL 214 (265)
||.+++..|..++ ..||..+.+.|++.+.+++.++...+ ++++++...++.|.+. ...+.+++.|++++++++++++
T Consensus 1 Wg~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~~~~ii 79 (260)
T TIGR00950 1 WGTTGVVIGQYLEGQVPLYFAVFRRLIFALLLLLPLLRRR-PPLKRLLRLLLLGALQIGVFYVLYFVAVKRLPVGEAALL 79 (260)
T ss_pred CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhc-cCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHH
Confidence 9999999999887 67888889999988888887766554 4556666666676654 5666788899999999999999
Q ss_pred HHhHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHHhhHhhcCC
Q 024642 215 SLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLECSG 255 (265)
Q Consensus 215 ~~l~Pvfv~lla~l-lker~s~~~~iGllLa~iGv~LL~~~G 255 (265)
.++.|+++++++++ +|||+++++++|++++++|+.++..++
T Consensus 80 ~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~ 121 (260)
T TIGR00950 80 LYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDG 121 (260)
T ss_pred HhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccCC
Confidence 99999999999997 699999999999999999999887654
No 8
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.49 E-value=4.5e-13 Score=104.90 Aligned_cols=117 Identities=18% Similarity=0.250 Sum_probs=99.3
Q ss_pred HHHhhhHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHhhh--c----CChhhHHHHHHHHHH-HHHHHHHHHHHHhhcc
Q 024642 135 IVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWA--R----DDVKTRNAGIELGLW-VSLGYFVEALGLLTSD 207 (265)
Q Consensus 135 llWGss~i~~K~~l~~isP~~l~~lRfllAallLl~~~~~~--r----~~~r~~~~~~llGvl-l~~~~~l~~~gL~~ts 207 (265)
++||.+.++.|...+++||....++|++++++ ++++.... + .+.+++...+..|++ ...++.+++.|+++++
T Consensus 1 ~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 79 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLKKISPLSITFWRFLIAGI-LLILLLILGRKPFKNLSPRQWLWLLFLGLLGTALAYLLYFYALKYIS 79 (126)
T ss_pred ceeeeHHHHHHHHhccCCHHHHHHHHHHHHHH-HHHHHHhhccccccCCChhhhhhhhHhhccceehHHHHHHHHHHhcc
Confidence 47999999999999999999999999999997 44443322 1 234556666677776 4677888999999999
Q ss_pred hhHHHHHHHhHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHHhhHhh
Q 024642 208 AGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLE 252 (265)
Q Consensus 208 a~~AavL~~l~Pvfv~lla~l-lker~s~~~~iGllLa~iGv~LL~ 252 (265)
++.++.+.++.|+++.+++++ ++|++++++++|++++++|++++.
T Consensus 80 ~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 80 ASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999987 799999999999999999998875
No 9
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.48 E-value=1.1e-12 Score=120.32 Aligned_cols=127 Identities=17% Similarity=0.130 Sum_probs=105.8
Q ss_pred hhHHHHHHHHHHHHHhhhHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHhhhc--CChhhHHHHHHHHHHHHHHHHHHH
Q 024642 123 KIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWAR--DDVKTRNAGIELGLWVSLGYFVEA 200 (265)
Q Consensus 123 ~~~g~lllll~~llWGss~i~~K~~l~~isP~~l~~lRfllAallLl~~~~~~r--~~~r~~~~~~llGvll~~~~~l~~ 200 (265)
+.++++.++++++.|+++++++|.+.+++||..+.++|+++|+++++++...++ .++++++..+..|++....+.+++
T Consensus 10 ~~~~~~~~~la~~~~~~~~~~~K~~~~~~~~~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 89 (293)
T PRK10532 10 VWLPILLLLIAMASIQSGASLAKSLFPLVGAPGVTALRLALGTLILIAIFKPWRLRFAKEQRLPLLFYGVSLGGMNYLFY 89 (293)
T ss_pred cchHHHHHHHHHHHHHhhHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhHHhccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 468899999999999999999999999999999999999999999888765433 346677777777877666677888
Q ss_pred HHHhhcchhHHHHHHHhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhHhhcC
Q 024642 201 LGLLTSDAGRASFISLFTVIVVPLFDGMLGAIIPAHTWFGVLISALGVGMLECS 254 (265)
Q Consensus 201 ~gL~~tsa~~AavL~~l~Pvfv~lla~llker~s~~~~iGllLa~iGv~LL~~~ 254 (265)
+++++++++.++++..+.|+++.+++ +||+.+ +.++.++++|+.++...
T Consensus 90 ~al~~~~~~~a~~l~~t~Pi~~~ll~---~~~~~~--~~~~~i~~~Gv~li~~~ 138 (293)
T PRK10532 90 LSIQTVPLGIAVALEFTGPLAVALFS---SRRPVD--FVWVVLAVLGLWFLLPL 138 (293)
T ss_pred HHHhcccHHHHHHHHHHHHHHHHHHh---cCChHH--HHHHHHHHHHHheeeec
Confidence 99999999999999999999998876 355544 45677889999887643
No 10
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.37 E-value=4e-12 Score=104.73 Aligned_cols=128 Identities=18% Similarity=0.196 Sum_probs=114.7
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHhhhc-------CChhhHHHHHHHHHHHHHHHH
Q 024642 125 RSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWAR-------DDVKTRNAGIELGLWVSLGYF 197 (265)
Q Consensus 125 ~g~lllll~~llWGss~i~~K~~l~~isP~~l~~lRfllAallLl~~~~~~r-------~~~r~~~~~~llGvll~~~~~ 197 (265)
...++.++++++||...++.|++++++||...+..|-++..++++.++...+ .+.|.|...++-|+.....+.
T Consensus 3 ~~~~~ALLsA~fa~L~~iF~KIGl~~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGla~glswl 82 (140)
T COG2510 3 AAIIYALLSALFAGLTPIFAKIGLEGVDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGLAGGLSWL 82 (140)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccccCccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHHHHHHHHHH
Confidence 3567888999999999999999999999999999999999998888887653 245778888888887788888
Q ss_pred HHHHHHhhcchhHHHHHHHhHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHHhhHhh
Q 024642 198 VEALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLE 252 (265)
Q Consensus 198 l~~~gL~~tsa~~AavL~~l~Pvfv~lla~l-lker~s~~~~iGllLa~iGv~LL~ 252 (265)
++|.+++.-.++..+=+-.+.|+++.+++++ +|||++..+|+|+++..+|++++.
T Consensus 83 ~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs 138 (140)
T COG2510 83 LYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS 138 (140)
T ss_pred HHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence 9999999999999999999999999999997 799999999999999999998765
No 11
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=99.33 E-value=3.2e-11 Score=110.60 Aligned_cols=123 Identities=11% Similarity=0.081 Sum_probs=100.1
Q ss_pred HHHHHHhhc-cCHHHHHHHHHHHHHHHHHHHHh---hhc--CChhhHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHH
Q 024642 142 PILKAAEEI-MHPASFCAVRFVMSAIPFLPFVF---WAR--DDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFIS 215 (265)
Q Consensus 142 i~~K~~l~~-isP~~l~~lRfllAallLl~~~~---~~r--~~~r~~~~~~llGvll~~~~~l~~~gL~~tsa~~AavL~ 215 (265)
+.-|.++++ ..|..++++|+.++.+++.+... .++ .++++++..+.+|++....+.+.+.+++|+++++++++.
T Consensus 19 ~~NK~~l~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~s~s~~~li~ 98 (302)
T TIGR00817 19 IYNKKLLNVFPYPYFKTLISLAVGSLYCLLSWSSGLPKRLKISSALLKLLLPVAIVHTIGHVTSNVSLSKVAVSFTHTIK 98 (302)
T ss_pred HHHHHHHhhCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 356988887 77999999999999887766521 111 356788888899999877778899999999999999999
Q ss_pred HhHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHHhhHhhcCCCCCCc-cccc
Q 024642 216 LFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLECSGSPPSV-SIFK 264 (265)
Q Consensus 216 ~l~Pvfv~lla~l-lker~s~~~~iGllLa~iGv~LL~~~G~~~~l-GDll 264 (265)
+++|+++++++++ +|||+++++++|++++++|+.+...++.+.+. ||++
T Consensus 99 ~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~~~~~~~~G~~~ 149 (302)
T TIGR00817 99 AMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALASDTELSFNWAGFLS 149 (302)
T ss_pred hcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhcCCcccccHHHHHH
Confidence 9999999999997 69999999999999999999876433334443 7654
No 12
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=99.32 E-value=8.1e-11 Score=111.25 Aligned_cols=124 Identities=9% Similarity=0.064 Sum_probs=98.6
Q ss_pred HHHHHHHhhccC-HHHHHHHHHHHHHHHHHHHHhh--hc-CC----hhhHHHHHHHHHHHHHHHHHHHHHHhhcchhHHH
Q 024642 141 IPILKAAEEIMH-PASFCAVRFVMSAIPFLPFVFW--AR-DD----VKTRNAGIELGLWVSLGYFVEALGLLTSDAGRAS 212 (265)
Q Consensus 141 ~i~~K~~l~~is-P~~l~~lRfllAallLl~~~~~--~r-~~----~r~~~~~~llGvll~~~~~l~~~gL~~tsa~~Aa 212 (265)
-...|.+++.++ |+.++.+|++++++++.++... ++ ++ +++++..+.+|++....+...+.|+++++++.+.
T Consensus 65 ~~~nK~vl~~~~~P~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~llp~gl~~~~~~~~~~~sl~~~svs~~~ 144 (350)
T PTZ00343 65 VVDNKLALNMLPLPWTISSLQLFVGWLFALLYWATGFRKIPRIKSLKLFLKNFLPQGLCHLFVHFGAVISMGLGAVSFTH 144 (350)
T ss_pred HHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHH
Confidence 556699999999 9999999999998776554322 11 11 2356677788888765566677999999999999
Q ss_pred HHHHhHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHHhhHhhcCCCCCC-ccccc
Q 024642 213 FISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLECSGSPPS-VSIFK 264 (265)
Q Consensus 213 vL~~l~Pvfv~lla~l-lker~s~~~~iGllLa~iGv~LL~~~G~~~~-lGDll 264 (265)
++.++.|+++++++++ +|||++++++++++++++|+.+...++.+++ .|+++
T Consensus 145 iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~~~~~~~~~G~~~ 198 (350)
T PTZ00343 145 VVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASVKELHFTWLAFWC 198 (350)
T ss_pred HHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheecccchhHHHHHHH
Confidence 9999999999999997 7999999999999999999999775443443 36543
No 13
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.19 E-value=1.3e-09 Score=96.71 Aligned_cols=126 Identities=23% Similarity=0.257 Sum_probs=105.5
Q ss_pred hHHHHHHHHHHHHHhhhHHHHHHHhhccCH--HHHHHHHHHHHHHHHHHHHhhhcC----ChhhHHHHHHHHHHH-HHHH
Q 024642 124 IRSIFLLNVITIVYASDIPILKAAEEIMHP--ASFCAVRFVMSAIPFLPFVFWARD----DVKTRNAGIELGLWV-SLGY 196 (265)
Q Consensus 124 ~~g~lllll~~llWGss~i~~K~~l~~isP--~~l~~lRfllAallLl~~~~~~r~----~~r~~~~~~llGvll-~~~~ 196 (265)
.+|.++.++++++|+.+.+..|...++.+| ..+..+|+.+++++++++....++ +.+++...+..|++. ..+|
T Consensus 127 ~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (260)
T TIGR00950 127 PAGLLLGLGSGISFALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGPNPQALSLQWGALLYLGLIGTALAY 206 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999887774 455557899999998888765432 234555556666654 5678
Q ss_pred HHHHHHHhhcchhHHHHHHHhHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHHhh
Q 024642 197 FVEALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVG 249 (265)
Q Consensus 197 ~l~~~gL~~tsa~~AavL~~l~Pvfv~lla~l-lker~s~~~~iGllLa~iGv~ 249 (265)
.+++.++++.++++++.+.++.|+++.+++++ ++|+++..+++|+++.+.|+.
T Consensus 207 ~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~~ 260 (260)
T TIGR00950 207 FLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAVL 260 (260)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC
Confidence 88999999999999999999999999999986 799999999999999999873
No 14
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=99.17 E-value=1.8e-09 Score=95.69 Aligned_cols=134 Identities=21% Similarity=0.279 Sum_probs=105.2
Q ss_pred hhHHHHHHHHHHHHHhhhHHHHHHHhhc-cCHHHHHHHHHHHHHHHHHHHHhhhc----CChhhHHHHHHHHHH-HHHHH
Q 024642 123 KIRSIFLLNVITIVYASDIPILKAAEEI-MHPASFCAVRFVMSAIPFLPFVFWAR----DDVKTRNAGIELGLW-VSLGY 196 (265)
Q Consensus 123 ~~~g~lllll~~llWGss~i~~K~~l~~-isP~~l~~lRfllAallLl~~~~~~r----~~~r~~~~~~llGvl-l~~~~ 196 (265)
...+....++.++.|+.+....|...++ .++....+.|++.+.+++++...+++ ...+.++...+.+.+ ....+
T Consensus 5 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (292)
T COG0697 5 LLLGLLALLLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLLLEPRGLRPALRPWLLLLLLALLGLALPF 84 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHH
Confidence 3567778888889999999999998886 77777777799999988555544332 111222344444444 34556
Q ss_pred HHHHHHHhhcchhHHHHHHHhHHHHHHHHHH-Hh-cCcCcHHHHHHHHHHHHHhhHhhcCCC
Q 024642 197 FVEALGLLTSDAGRASFISLFTVIVVPLFDG-ML-GAIIPAHTWFGVLISALGVGMLECSGS 256 (265)
Q Consensus 197 ~l~~~gL~~tsa~~AavL~~l~Pvfv~lla~-ll-ker~s~~~~iGllLa~iGv~LL~~~G~ 256 (265)
.+++.++++++++.++++.++.|+++.++++ ++ +||++++++++++++++|++++..++.
T Consensus 85 ~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~ 146 (292)
T COG0697 85 LLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGG 146 (292)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCC
Confidence 7788999999999999999999999999997 54 999999999999999999999887654
No 15
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=99.14 E-value=8.8e-10 Score=87.86 Aligned_cols=97 Identities=19% Similarity=0.246 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHHHHhhhcC--------ChhhHHHHHHHHHHHH-HHHHHHHHHHhhcchhHHHHHHHhHHHHHHHHHHH
Q 024642 158 AVRFVMSAIPFLPFVFWARD--------DVKTRNAGIELGLWVS-LGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGM 228 (265)
Q Consensus 158 ~lRfllAallLl~~~~~~r~--------~~r~~~~~~llGvll~-~~~~l~~~gL~~tsa~~AavL~~l~Pvfv~lla~l 228 (265)
.+|++.+.+++..+...+++ +++.+.+....|++.. .++.+++.|+++++ +.++.+.+++|+++.+++++
T Consensus 2 a~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~ 80 (113)
T PF13536_consen 2 AFRYLFSVLFLLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWL 80 (113)
T ss_pred HHHHHHHHHHHHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHH
Confidence 68999999988887765432 1233555566677664 67888899999999 58889999999999999997
Q ss_pred -hcCcCcHHHHHHHHHHHHHhhHhhcCC
Q 024642 229 -LGAIIPAHTWFGVLISALGVGMLECSG 255 (265)
Q Consensus 229 -lker~s~~~~iGllLa~iGv~LL~~~G 255 (265)
+|||++++++++++++++|++++..++
T Consensus 81 ~~~er~~~~~~~a~~l~~~Gv~li~~~~ 108 (113)
T PF13536_consen 81 FFKERLSPRRWLAILLILIGVILIAWSD 108 (113)
T ss_pred HhcCCCCHHHHHHHHHHHHHHHHHhhhh
Confidence 799999999999999999999987754
No 16
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.14 E-value=1.9e-09 Score=98.23 Aligned_cols=126 Identities=17% Similarity=0.212 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHhhhHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHhhh--c----CChhh-HHHHHHHHHHHHHHHHHH
Q 024642 127 IFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWA--R----DDVKT-RNAGIELGLWVSLGYFVE 199 (265)
Q Consensus 127 ~lllll~~llWGss~i~~K~~l~~isP~~l~~lRfllAallLl~~~~~~--r----~~~r~-~~~~~llGvll~~~~~l~ 199 (265)
.++.++++++|+...+..|...+.-++ +.++++..++++++++...+ + ..+++ +...+..|+....++.++
T Consensus 3 ~~~~~~aa~~~a~~~~~~k~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (281)
T TIGR03340 3 LTLVVFSALMHAGWNLMAKSHADKEPD--FLWWALLAHSVLLTPYGLWYLAQVGWSRLPATFWLLLAISAVANMVYFLGL 80 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCchhH--HHHHHHHHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHHHHHHHHHHHH
Confidence 456788899999999999976555444 35777778888888776543 1 11233 333344444455667788
Q ss_pred HHHHhhcchhHHHHHHHhHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHHhhHhhcC
Q 024642 200 ALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLECS 254 (265)
Q Consensus 200 ~~gL~~tsa~~AavL~~l~Pvfv~lla~l-lker~s~~~~iGllLa~iGv~LL~~~ 254 (265)
+.|++++++++++.+.++.|+++.+++++ +|||+++++++|++++++|+.++..+
T Consensus 81 ~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~ 136 (281)
T TIGR03340 81 AQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLS 136 (281)
T ss_pred HHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 89999999999999999999999999997 79999999999999999999988754
No 17
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=99.07 E-value=4e-09 Score=97.38 Aligned_cols=132 Identities=18% Similarity=0.164 Sum_probs=112.4
Q ss_pred hhHHHHHHHHHHHHHhhhHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHhhhc---------CChhhHHHHHHHHHHHH
Q 024642 123 KIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWAR---------DDVKTRNAGIELGLWVS 193 (265)
Q Consensus 123 ~~~g~lllll~~llWGss~i~~K~~l~~isP~~l~~lRfllAallLl~~~~~~r---------~~~r~~~~~~llGvll~ 193 (265)
..+|+++.+.+.++||..+...|.. +++++..+...|.+-+..+++.++...| +++|.+....+.+++..
T Consensus 5 ~~~Gil~~l~Ay~lwG~lp~y~kll-~~~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~li~ 83 (293)
T COG2962 5 SRKGILLALLAYLLWGLLPLYFKLL-EPLPATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTALLIG 83 (293)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHH-ccCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 3689999999999999999999984 8999999999999999888776654322 23344555666777777
Q ss_pred HHHHHHHHHHhhcchhHHHHHHHhHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHHhhHhhcCC
Q 024642 194 LGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLECSG 255 (265)
Q Consensus 194 ~~~~l~~~gL~~tsa~~AavL~~l~Pvfv~lla~l-lker~s~~~~iGllLa~iGv~LL~~~G 255 (265)
..+..+.++...-.+-++++=..++|++..+++++ +|||+++.|+++++++.+||.......
T Consensus 84 ~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~ 146 (293)
T COG2962 84 LNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLL 146 (293)
T ss_pred HHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHc
Confidence 77888889999999999999999999999999997 799999999999999999999877643
No 18
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=98.94 E-value=6.2e-08 Score=88.98 Aligned_cols=130 Identities=13% Similarity=0.090 Sum_probs=104.5
Q ss_pred hHHHHHHHHHHHHHhhhHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHhhhc----CChhhHHHHHHHHHHH-HHHHHH
Q 024642 124 IRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWAR----DDVKTRNAGIELGLWV-SLGYFV 198 (265)
Q Consensus 124 ~~g~lllll~~llWGss~i~~K~~l~~isP~~l~~lRfllAallLl~~~~~~r----~~~r~~~~~~llGvll-~~~~~l 198 (265)
..|.++.+++++.|+...+..|...++.+|....... ++++++++++..... .+...+...+.+|++. ..+|.+
T Consensus 147 ~~G~ll~l~aa~~~a~~~v~~r~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lgv~~t~~~~~l 225 (293)
T PRK10532 147 LTGAALALGAGACWAIYILSGQRAGAEHGPATVAIGS-LIAALIFVPIGALQAGEALWHWSILPLGLAVAILSTALPYSL 225 (293)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHH-HHHHHHHHHHHHHccCcccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999988788888776554 556666666665432 1223333445566664 466888
Q ss_pred HHHHHhhcchhHHHHHHHhHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHHhhHhhcC
Q 024642 199 EALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLECS 254 (265)
Q Consensus 199 ~~~gL~~tsa~~AavL~~l~Pvfv~lla~l-lker~s~~~~iGllLa~iGv~LL~~~ 254 (265)
++.++++.++++++++.++.|++..+++++ ++|+++..+++|.++.++|+++....
T Consensus 226 ~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~ 282 (293)
T PRK10532 226 EMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLT 282 (293)
T ss_pred HHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999987 79999999999999999999887543
No 19
>PRK11689 aromatic amino acid exporter; Provisional
Probab=98.90 E-value=6.8e-08 Score=88.80 Aligned_cols=128 Identities=13% Similarity=0.129 Sum_probs=99.8
Q ss_pred hHHHHHHHHHHHHHhhhHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHhhhc-----CChhhHHHHHHHHHHHHHHHHH
Q 024642 124 IRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWAR-----DDVKTRNAGIELGLWVSLGYFV 198 (265)
Q Consensus 124 ~~g~lllll~~llWGss~i~~K~~l~~isP~~l~~lRfllAallLl~~~~~~r-----~~~r~~~~~~llGvll~~~~~l 198 (265)
..|.++.++++++|+.+.+..|...++.+|..... ..+++++.+...... .+...+...+..|+....+|.+
T Consensus 155 ~~G~~~~l~aa~~~A~~~v~~k~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~t~~~~~l 231 (295)
T PRK11689 155 PLSYGLAFIGAFIWAAYCNVTRKYARGKNGITLFF---ILTALALWIKYFLSPQPAMVFSLPAIIKLLLAAAAMGFGYAA 231 (295)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhccCCCCchhHHH---HHHHHHHHHHHHHhcCccccCCHHHHHHHHHHHHHHHHHHHH
Confidence 45889999999999999999999877778776532 334444443222222 1234455555566555667899
Q ss_pred HHHHHhhcchhHHHHHHHhHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHHhhHhhcC
Q 024642 199 EALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLECS 254 (265)
Q Consensus 199 ~~~gL~~tsa~~AavL~~l~Pvfv~lla~l-lker~s~~~~iGllLa~iGv~LL~~~ 254 (265)
++.++++.++++++.+.++.|++..+++++ ++|+++..+++|.++.++|+++....
T Consensus 232 ~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~ 288 (295)
T PRK11689 232 WNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLA 288 (295)
T ss_pred HHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhh
Confidence 999999999999999999999999999986 79999999999999999999876543
No 20
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=98.86 E-value=1.3e-07 Score=86.67 Aligned_cols=130 Identities=10% Similarity=0.011 Sum_probs=106.0
Q ss_pred hHHHHHHHHHHHHHhhhHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHhhhc------CChhhHHHHHHHHHHH-HHHH
Q 024642 124 IRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWAR------DDVKTRNAGIELGLWV-SLGY 196 (265)
Q Consensus 124 ~~g~lllll~~llWGss~i~~K~~l~~isP~~l~~lRfllAallLl~~~~~~r------~~~r~~~~~~llGvll-~~~~ 196 (265)
..|.++.+++++.|+...+..|.... -++.....+.+.++++++.++..... .+.+.+...+..|++. ..+|
T Consensus 149 ~~G~l~~l~a~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~i~~s~~~~ 227 (292)
T PRK11272 149 PWGAILILIASASWAFGSVWSSRLPL-PVGMMAGAAEMLAAGVVLLIASLLSGERLTALPTLSGFLALGYLAVFGSIIAI 227 (292)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCC-CcchHHHHHHHHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHHHHHHHH
Confidence 46889999999999999999988543 34566778888899888877765432 1234555656666653 4678
Q ss_pred HHHHHHHhhcchhHHHHHHHhHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHHhhHhhcC
Q 024642 197 FVEALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLECS 254 (265)
Q Consensus 197 ~l~~~gL~~tsa~~AavL~~l~Pvfv~lla~l-lker~s~~~~iGllLa~iGv~LL~~~ 254 (265)
.+++.++++.++++++++..+.|++.++++++ ++|+++..+++|.++.+.|++++...
T Consensus 228 ~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~ 286 (292)
T PRK11272 228 SAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLG 286 (292)
T ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999987 79999999999999999999887654
No 21
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=98.84 E-value=5.6e-08 Score=89.66 Aligned_cols=126 Identities=13% Similarity=0.074 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHhhhcC---C-hhhHHHHHHHHHHHHHHHHHHHH
Q 024642 126 SIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARD---D-VKTRNAGIELGLWVSLGYFVEAL 201 (265)
Q Consensus 126 g~lllll~~llWGss~i~~K~~l~~isP~~l~~lRfllAallLl~~~~~~r~---~-~r~~~~~~llGvll~~~~~l~~~ 201 (265)
++++.++++++||+.++..|... +.++.++. |..++++++..+....+. + ++.+...++.|++...++.+++.
T Consensus 2 ~~l~~lia~~~wGs~g~~~k~~~-g~~~~~~~--~~~~g~l~~~~~~~~~~~~~~~~~~~~~~g~l~G~~w~ig~~~~~~ 78 (290)
T TIGR00776 2 DILIALIPALFWGSFVLINVKIG-GGPYSQTL--GTTFGALILSIAIAIFVLPEFWALSIFLVGLLSGAFWALGQINQFK 78 (290)
T ss_pred chHHHHHHHHHHhhhHHHHhccC-CCHHHHHH--HHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHhhhhhHHH
Confidence 46788899999999999999866 78887775 788888877765443322 1 33345566777777777888999
Q ss_pred HHhhcchhHHHHHHH-hHHHHHHHHHHH-hcCcCcHHH----HHHHHHHHHHhhHhhcC
Q 024642 202 GLLTSDAGRASFISL-FTVIVVPLFDGM-LGAIIPAHT----WFGVLISALGVGMLECS 254 (265)
Q Consensus 202 gL~~tsa~~AavL~~-l~Pvfv~lla~l-lker~s~~~----~iGllLa~iGv~LL~~~ 254 (265)
++++++.+.+-.+.+ +.++++.+++.+ +||+.++++ ++|++++++|+.++...
T Consensus 79 ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~ 137 (290)
T TIGR00776 79 SMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRS 137 (290)
T ss_pred HHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEec
Confidence 999999999987776 888888889986 799999999 99999999999887653
No 22
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=98.80 E-value=2.1e-07 Score=88.81 Aligned_cols=130 Identities=8% Similarity=0.067 Sum_probs=99.8
Q ss_pred hHHHHHHHHHHHHHhhhHHHHHHHhhccCH-HHHHHHHHHHHHHHHHHHHhhh-cCChhh--------HHHHHHHHHHHH
Q 024642 124 IRSIFLLNVITIVYASDIPILKAAEEIMHP-ASFCAVRFVMSAIPFLPFVFWA-RDDVKT--------RNAGIELGLWVS 193 (265)
Q Consensus 124 ~~g~lllll~~llWGss~i~~K~~l~~isP-~~l~~lRfllAallLl~~~~~~-r~~~r~--------~~~~~llGvll~ 193 (265)
..|.++++++++.|+.+.+..|......+| ...+++-.+++++.+.++.... +.+... ....+..|+...
T Consensus 188 ~lG~~l~l~aa~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~y~~i~t~ 267 (358)
T PLN00411 188 LIGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDITLITIVTMAIITS 267 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccceeccchHHHHHHHHHHHHH
Confidence 458889999999999999999987776655 4666677777766665444332 211111 112223344444
Q ss_pred HHHHHHHHHHhhcchhHHHHHHHhHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHHhhHhhc
Q 024642 194 LGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLEC 253 (265)
Q Consensus 194 ~~~~l~~~gL~~tsa~~AavL~~l~Pvfv~lla~l-lker~s~~~~iGllLa~iGv~LL~~ 253 (265)
.+|.+++.++++.+++.++++.++.|++..+++++ ++|+++..+++|.++.++|+++...
T Consensus 268 lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~ 328 (358)
T PLN00411 268 VYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMW 328 (358)
T ss_pred HHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHh
Confidence 57888999999999999999999999999999997 7999999999999999999998765
No 23
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=98.66 E-value=4.7e-09 Score=96.32 Aligned_cols=127 Identities=17% Similarity=0.206 Sum_probs=91.8
Q ss_pred hHHHHHHHHHHHHHhhhHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHhhhc------CChhhHHHHHHHHHHHHHHHH
Q 024642 124 IRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWAR------DDVKTRNAGIELGLWVSLGYF 197 (265)
Q Consensus 124 ~~g~lllll~~llWGss~i~~K~~l~~isP~~l~~lRfllAallLl~~~~~~r------~~~r~~~~~~llGvll~~~~~ 197 (265)
.+|.+++.+. .++-++.++.+.+ .+.+|......|++.--++-.+.....+ +..|.| +++-|++.+.+..
T Consensus 37 ~~gl~l~~vs-~ff~~~~vv~t~~-~e~~p~e~a~~r~l~~mlit~pcliy~~~~v~gp~g~R~~--LiLRg~mG~tgvm 112 (346)
T KOG4510|consen 37 NLGLLLLTVS-YFFNSCMVVSTKV-LENDPMELASFRLLVRMLITYPCLIYYMQPVIGPEGKRKW--LILRGFMGFTGVM 112 (346)
T ss_pred ccCceehhhH-HHHhhHHHhhhhh-hccChhHhhhhhhhhehhhhheEEEEEeeeeecCCCcEEE--EEeehhhhhhHHH
Confidence 4566676666 4455554444432 4789999999996665555555544332 112222 2233444444455
Q ss_pred HHHHHHhhcchhHHHHHHHhHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHHhhHhhcC
Q 024642 198 VEALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLECS 254 (265)
Q Consensus 198 l~~~gL~~tsa~~AavL~~l~Pvfv~lla~l-lker~s~~~~iGllLa~iGv~LL~~~ 254 (265)
+.+++++|.+-+.|++|..+.|+++.+++|+ +||+.++...++.++.+.||++++-+
T Consensus 113 lmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRP 170 (346)
T KOG4510|consen 113 LMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRP 170 (346)
T ss_pred HHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecC
Confidence 6679999999999999999999999999997 79999999999999999999998754
No 24
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=98.62 E-value=2.4e-06 Score=78.64 Aligned_cols=130 Identities=15% Similarity=0.112 Sum_probs=96.5
Q ss_pred hHHHHHHHHHHHHHhhhHHHHHHHhhccCH---HHHHHHHHHHHHHHHHHHHhh-hc----------CChhhHHHHHHHH
Q 024642 124 IRSIFLLNVITIVYASDIPILKAAEEIMHP---ASFCAVRFVMSAIPFLPFVFW-AR----------DDVKTRNAGIELG 189 (265)
Q Consensus 124 ~~g~lllll~~llWGss~i~~K~~l~~isP---~~l~~lRfllAallLl~~~~~-~r----------~~~r~~~~~~llG 189 (265)
..|.++.+++++.|+...+..|...+..++ ..+..+=.+++.+.+...... .+ .+...+...+.+|
T Consensus 142 ~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 221 (299)
T PRK11453 142 MLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLA 221 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHH
Confidence 468899999999999999999986543332 333344444444433332211 11 1234455566667
Q ss_pred HHH-HHHHHHHHHHHhhcchhHHHHHHHhHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHHhhHhhc
Q 024642 190 LWV-SLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLEC 253 (265)
Q Consensus 190 vll-~~~~~l~~~gL~~tsa~~AavL~~l~Pvfv~lla~l-lker~s~~~~iGllLa~iGv~LL~~ 253 (265)
++. ..+|.+++.++++.++++++.+..+.|++..+++++ ++|+++..+++|.++.++|+.+...
T Consensus 222 i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~ 287 (299)
T PRK11453 222 FVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVF 287 (299)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhc
Confidence 654 467888999999999999999999999999999987 7999999999999999999987654
No 25
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=98.59 E-value=2.8e-07 Score=83.98 Aligned_cols=128 Identities=14% Similarity=0.084 Sum_probs=89.5
Q ss_pred hHHHHHHHHHHHHHhhhHHHHHHHhhccCHH----HHHHHHHHHHHHHHHHHHhhhc-C----ChhhHHHHHHH-HHHHH
Q 024642 124 IRSIFLLNVITIVYASDIPILKAAEEIMHPA----SFCAVRFVMSAIPFLPFVFWAR-D----DVKTRNAGIEL-GLWVS 193 (265)
Q Consensus 124 ~~g~lllll~~llWGss~i~~K~~l~~isP~----~l~~lRfllAallLl~~~~~~r-~----~~r~~~~~~ll-Gvll~ 193 (265)
.++..+.++++++|+.+.+..|...++.+|. ....+.+++.++.+.++...++ . ....+...+.. ++...
T Consensus 143 ~~g~~~~l~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 222 (281)
T TIGR03340 143 RKAYAWALAAALGTAIYSLSDKAAALGVPAFYSALGYLGIGFLAMGWPFLLLYLKRHGRSMFPYARQILPSATLGGLMIG 222 (281)
T ss_pred hhHHHHHHHHHHHHHHhhhhccccccchhcccccHHHHHHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHH
Confidence 3566778889999999999998765444442 2333444443333333222111 1 11122222333 34445
Q ss_pred HHHHHHHHHHhhcchhHHHHHHHhHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHHhhHh
Q 024642 194 LGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGML 251 (265)
Q Consensus 194 ~~~~l~~~gL~~tsa~~AavL~~l~Pvfv~lla~l-lker~s~~~~iGllLa~iGv~LL 251 (265)
.+|.+++.++++.+++.++.+.++.|++..+++++ ++|+++..+++|.++.++|+.++
T Consensus 223 l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l~ 281 (281)
T TIGR03340 223 GAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVVL 281 (281)
T ss_pred HHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHhC
Confidence 67889999999999999999999999999999986 79999999999999999999864
No 26
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=98.56 E-value=1.4e-06 Score=80.03 Aligned_cols=130 Identities=16% Similarity=0.078 Sum_probs=101.0
Q ss_pred hHHHHHHHHHHHHHhhhHHHHHHHhh--ccCHHHHHHHHHHHHHHHHHHHHhhhc-CC--hhhH-----------HH--H
Q 024642 124 IRSIFLLNVITIVYASDIPILKAAEE--IMHPASFCAVRFVMSAIPFLPFVFWAR-DD--VKTR-----------NA--G 185 (265)
Q Consensus 124 ~~g~lllll~~llWGss~i~~K~~l~--~isP~~l~~lRfllAallLl~~~~~~r-~~--~r~~-----------~~--~ 185 (265)
..|.++.+++++.|+...+..|...+ +.+|..+..+-..+++++++|+..... .. ..++ .. .
T Consensus 144 ~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (302)
T TIGR00817 144 WAGFLSAMISNITFVSRNIFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVS 223 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHH
Confidence 46889999999999999999999887 899999999999999999888866432 11 1100 11 1
Q ss_pred HHHHHHH-HHHHHHHHHHHhhcchhHHHHHHHhHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHHhhHhhc
Q 024642 186 IELGLWV-SLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLEC 253 (265)
Q Consensus 186 ~llGvll-~~~~~l~~~gL~~tsa~~AavL~~l~Pvfv~lla~l-lker~s~~~~iGllLa~iGv~LL~~ 253 (265)
+..+... ...+.+.+.+++.+++..++++..+.|+++.+++++ ++|+++..+++|.++.++|+.+...
T Consensus 224 ~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~ 293 (302)
T TIGR00817 224 LVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSR 293 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHH
Confidence 1222211 112235567999999999999999999999999986 7999999999999999999987654
No 27
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=98.54 E-value=7.9e-06 Score=72.35 Aligned_cols=130 Identities=16% Similarity=0.271 Sum_probs=100.7
Q ss_pred hHHHHHHHHHHHHHhhhHHHHHHHhhccCHHHHHH-HHHHHHHHHHHHHHhhhc---CChhhHHHHHHHHHHHH-HHHHH
Q 024642 124 IRSIFLLNVITIVYASDIPILKAAEEIMHPASFCA-VRFVMSAIPFLPFVFWAR---DDVKTRNAGIELGLWVS-LGYFV 198 (265)
Q Consensus 124 ~~g~lllll~~llWGss~i~~K~~l~~isP~~l~~-lRfllAallLl~~~~~~r---~~~r~~~~~~llGvll~-~~~~l 198 (265)
..|.++.+++++.|+.+.+..|... ..++..... +-+..+.++..+...... ...+.+......|++.. .++.+
T Consensus 153 ~~g~~~~l~a~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~ 231 (292)
T COG0697 153 LLGLLLALAAALLWALYTALVKRLS-RLGPVTLALLLQLLLALLLLLLFFLSGFGAPILSRAWLLLLYLGVFSTGLAYLL 231 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999999998876 777777776 444433333333333221 23455666667777654 57889
Q ss_pred HHHHHhhcchhHHHHHHHhHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHHhhHhhcC
Q 024642 199 EALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLECS 254 (265)
Q Consensus 199 ~~~gL~~tsa~~AavL~~l~Pvfv~lla~l-lker~s~~~~iGllLa~iGv~LL~~~ 254 (265)
++.+++..+++.++.+..+.|++.++++++ ++|+++..+++|..+.+.|+.+...+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~ 288 (292)
T COG0697 232 WYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR 288 (292)
T ss_pred HHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999998886 79999999999999999999887543
No 28
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=98.50 E-value=3.4e-06 Score=80.02 Aligned_cols=119 Identities=13% Similarity=0.141 Sum_probs=85.0
Q ss_pred HHHhhhHHHHHHHhh-ccC-HHHHHHHHHHHHHHHHHHHHhhhc-C------ChhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 024642 135 IVYASDIPILKAAEE-IMH-PASFCAVRFVMSAIPFLPFVFWAR-D------DVKTRNAGIELGLWVSLGYFVEALGLLT 205 (265)
Q Consensus 135 llWGss~i~~K~~l~-~is-P~~l~~lRfllAallLl~~~~~~r-~------~~r~~~~~~llGvll~~~~~l~~~gL~~ 205 (265)
++=..+...+....+ +.+ |..-.++=+++-.++..++...|+ . -+++|+..++++++-..+.++...|++|
T Consensus 23 l~~~~t~~~s~~l~~~~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~~~~~~~~~~~~~w~y~lla~~Dv~aN~~~v~a~~y 102 (334)
T PF06027_consen 23 LCITGTGTFSSLLANKGVNIPTFQSFFNYVLLALVYTPILLYRRGFKKWLKVLKRPWWKYFLLALLDVEANYLVVLAYQY 102 (334)
T ss_pred HHHHhHHHHHHHHHhcCccCcHHHHHHHHHHHHHHHhhhhhhccccccchhhcchhHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 333344444444333 232 444444444443444445444442 1 1355777778888877778888999999
Q ss_pred cchhHHHHHHHhHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHHhhHhhc
Q 024642 206 SDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLEC 253 (265)
Q Consensus 206 tsa~~AavL~~l~Pvfv~lla~l-lker~s~~~~iGllLa~iGv~LL~~ 253 (265)
|+.+.+.++.+..-+++++++++ +|+|.++.+++|++++++|+.++..
T Consensus 103 TsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~ 151 (334)
T PF06027_consen 103 TSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVV 151 (334)
T ss_pred ccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheee
Confidence 99999999999999999999997 7999999999999999999988765
No 29
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=98.49 E-value=5e-06 Score=76.47 Aligned_cols=127 Identities=8% Similarity=-0.035 Sum_probs=87.8
Q ss_pred HHHHHHHHHhhhHHHHHHHhhc--cCHHHHHHHHHHHHHHHHHHHHhhhc-----CChhhHHHHHHHHHHHHHHHHHHHH
Q 024642 129 LLNVITIVYASDIPILKAAEEI--MHPASFCAVRFVMSAIPFLPFVFWAR-----DDVKTRNAGIELGLWVSLGYFVEAL 201 (265)
Q Consensus 129 llll~~llWGss~i~~K~~l~~--isP~~l~~lRfllAallLl~~~~~~r-----~~~r~~~~~~llGvll~~~~~l~~~ 201 (265)
..++++++|+.+.+..|....+ .+......+=..++.+.++++..... .+...+......|+....+|.+++.
T Consensus 153 ~~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~i~~~~~~~ 232 (296)
T PRK15430 153 IALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAIADSSTSHMGQNPMSLNLLLIAAGIVTTVPLLCFTA 232 (296)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHccCCcccccCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788999999998886432 22233333333333333222211100 0111123333455555567889999
Q ss_pred HHhhcchhHHHHHHHhHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHHhhHhhcCC
Q 024642 202 GLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLECSG 255 (265)
Q Consensus 202 gL~~tsa~~AavL~~l~Pvfv~lla~l-lker~s~~~~iGllLa~iGv~LL~~~G 255 (265)
++++.+++.++.+.++.|++..+++++ ++|+++..+++|.++.++|+.++..+|
T Consensus 233 a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~~~ 287 (296)
T PRK15430 233 AATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMDA 287 (296)
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999987 799999999999999999998877654
No 30
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=98.35 E-value=7.5e-06 Score=75.58 Aligned_cols=128 Identities=20% Similarity=0.170 Sum_probs=98.5
Q ss_pred hHHHHHHHHHHHHHhhhHHHHHHHhhccCHHHHHHHHH---HHHHHHHHHHHhhhcC-ChhhHHHHHHHHHHHHHHHHHH
Q 024642 124 IRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRF---VMSAIPFLPFVFWARD-DVKTRNAGIELGLWVSLGYFVE 199 (265)
Q Consensus 124 ~~g~lllll~~llWGss~i~~K~~l~~isP~~l~~lRf---llAallLl~~~~~~r~-~~r~~~~~~llGvll~~~~~l~ 199 (265)
.+|.+..+++++.++...+..|.. +.+|....+..+ +++++++.+...+.++ ..+.....++.|++-..+|.++
T Consensus 151 ~~Gi~~~l~sg~~y~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~~ia~~~y 228 (290)
T TIGR00776 151 KKGILLLLMSTIGYLVYVVVAKAF--GVDGLSVLLPQAIGMVIGGIIFNLGHILAKPLKKYAILLNILPGLMWGIGNFFY 228 (290)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHc--CCCcceehhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 579999999999999999999975 588888844444 4444444333211111 1223444556888767778888
Q ss_pred HHHHh-hcchhHHHHHHHhHHHHHHHHHHH-hcCcCcHHHH----HHHHHHHHHhhHhhc
Q 024642 200 ALGLL-TSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTW----FGVLISALGVGMLEC 253 (265)
Q Consensus 200 ~~gL~-~tsa~~AavL~~l~Pvfv~lla~l-lker~s~~~~----iGllLa~iGv~LL~~ 253 (265)
+.+++ +..++.++++....|+...+++.+ ++|+.+++++ +|.++.+.|+.++..
T Consensus 229 ~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~ 288 (290)
T TIGR00776 229 LFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGI 288 (290)
T ss_pred HHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhc
Confidence 89999 999999999999999999999986 8999999999 999999999988643
No 31
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=98.32 E-value=3.2e-05 Score=73.23 Aligned_cols=129 Identities=9% Similarity=0.110 Sum_probs=95.7
Q ss_pred hHHHHHHHHHHHHHhhhHHHHHHHhhc-------cCHHHHHHHHHHHHHHHHHHHHhhhc-CC----h-------hh--H
Q 024642 124 IRSIFLLNVITIVYASDIPILKAAEEI-------MHPASFCAVRFVMSAIPFLPFVFWAR-DD----V-------KT--R 182 (265)
Q Consensus 124 ~~g~lllll~~llWGss~i~~K~~l~~-------isP~~l~~lRfllAallLl~~~~~~r-~~----~-------r~--~ 182 (265)
..|.++.+++.+.|+...+..|..+++ .++..+..+-.++++++++|+..... .. + .. +
T Consensus 193 ~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~ 272 (350)
T PTZ00343 193 WLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTK 272 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccch
Confidence 568999999999999999999998764 56776666667888888888765221 10 0 01 1
Q ss_pred HHHHHHHHHHHHHHHHH----HHHHhhcchhHHHHHHHhHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHHhhHhh
Q 024642 183 NAGIELGLWVSLGYFVE----ALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLE 252 (265)
Q Consensus 183 ~~~~llGvll~~~~~l~----~~gL~~tsa~~AavL~~l~Pvfv~lla~l-lker~s~~~~iGllLa~iGv~LL~ 252 (265)
...+...+...+.|.++ +.+++.+++.++++...+-|+++.+++++ ++|+++..+++|.+++++|+.+..
T Consensus 273 ~~~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs 347 (350)
T PTZ00343 273 GIIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYS 347 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHh
Confidence 11111111122233333 46999999999999999999999999996 899999999999999999998753
No 32
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=98.31 E-value=5.5e-05 Score=62.01 Aligned_cols=125 Identities=18% Similarity=0.160 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHhh-------ccCHHHHHHHHHHHHHHHHHHHHhhhc-CC---------------h-hh
Q 024642 126 SIFLLNVITIVYASDIPILKAAEE-------IMHPASFCAVRFVMSAIPFLPFVFWAR-DD---------------V-KT 181 (265)
Q Consensus 126 g~lllll~~llWGss~i~~K~~l~-------~isP~~l~~lRfllAallLl~~~~~~r-~~---------------~-r~ 181 (265)
|.++.+++.++-+...+..|..++ ..+++.+..+-...+.++++++....+ .. . +.
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF 80 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence 456788888999999999988764 479999999999999999998766432 10 0 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHhHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHHhhH
Q 024642 182 RNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGM 250 (265)
Q Consensus 182 ~~~~~llGvll~~~~~l~~~gL~~tsa~~AavL~~l~Pvfv~lla~l-lker~s~~~~iGllLa~iGv~L 250 (265)
+...+..|++........+.-++++++-..+++..+-.+++.+++++ ++|+++..+++|++++++|+++
T Consensus 81 ~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~ 150 (153)
T PF03151_consen 81 IFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLL 150 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHhe
Confidence 23334455555555566778899999999999999999999999987 7999999999999999999865
No 33
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.22 E-value=4.9e-05 Score=61.07 Aligned_cols=61 Identities=20% Similarity=0.194 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHhhcchhHHHHHHHhHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHHhhHhh
Q 024642 192 VSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLE 252 (265)
Q Consensus 192 l~~~~~l~~~gL~~tsa~~AavL~~l~Pvfv~lla~l-lker~s~~~~iGllLa~iGv~LL~ 252 (265)
....+.++..+++..+.+.+-.+.++.++++.+++++ +|||++.++++|+.+.++|++++.
T Consensus 47 ~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 47 LGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 3456778889999999999998888999999999987 899999999999999999998864
No 34
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=98.13 E-value=9.8e-05 Score=61.04 Aligned_cols=119 Identities=17% Similarity=0.048 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHHHHHHHH-HHHHHHHHHHH
Q 024642 125 RSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLWV-SLGYFVEALGL 203 (265)
Q Consensus 125 ~g~lllll~~llWGss~i~~K~~l~~isP~~l~~lRfllAallLl~~~~~~r~~~r~~~~~~llGvll-~~~~~l~~~gL 203 (265)
+++++.++..++=...-++.|.++++.+....... . +..+.. . ..+ ...+..|+.. ..+|.++..++
T Consensus 2 ~~~~~i~~sv~l~~~gQl~~K~g~~~~g~~~~~~~-~-~~~~~~----~--~~p----~~~i~lgl~~~~la~~~w~~aL 69 (129)
T PRK02971 2 MGYLWGLASVLLASVAQLSLKWGMSRLPLLSHAWD-F-IAALLA----F--GLA----LRAVLLGLAGYALSMLCWLKAL 69 (129)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhCCCccchhH-H-HHHHHH----H--hcc----HHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777777778888999999887655433221 1 111110 0 011 1123445543 45688899999
Q ss_pred hhcchhHHHHHHHhHHHHHHHHHH---HhcCcCcHHHHHHHHHHHHHhhHhhcCC
Q 024642 204 LTSDAGRASFISLFTVIVVPLFDG---MLGAIIPAHTWFGVLISALGVGMLECSG 255 (265)
Q Consensus 204 ~~tsa~~AavL~~l~Pvfv~lla~---llker~s~~~~iGllLa~iGv~LL~~~G 255 (265)
+..+.+.+.-+.+..++++.+.++ +++|+++..+++|+++.++|++++..++
T Consensus 70 ~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~ 124 (129)
T PRK02971 70 RYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPT 124 (129)
T ss_pred HhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCC
Confidence 999999999888888888888887 4799999999999999999999987544
No 35
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=98.07 E-value=0.00011 Score=67.26 Aligned_cols=126 Identities=20% Similarity=0.185 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHhh--hcCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 024642 126 SIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFW--ARDDVKTRNAGIELGLWVSLGYFVEALGL 203 (265)
Q Consensus 126 g~lllll~~llWGss~i~~K~~l~~isP~~l~~lRfllAallLl~~~~~--~r~~~r~~~~~~llGvll~~~~~l~~~gL 203 (265)
.++.++..++.-=....+.|...+.++|.-.+.+|..+++++++++.+- +|..++++...+..|+.+...+.+||.++
T Consensus 13 p~~~ll~amvsiq~Gas~Ak~LFP~vG~~g~t~lRl~~aaLIll~l~RPwr~r~~~~~~~~~~~yGvsLg~MNl~FY~si 92 (292)
T COG5006 13 PILALLVAMVSIQSGASFAKSLFPLVGAAGVTALRLAIAALILLALFRPWRRRLSKPQRLALLAYGVSLGGMNLLFYLSI 92 (292)
T ss_pred cHHHHHHHHHHHHhhHHHHHHHccccChhhHHHHHHHHHHHHHHHHhhHHHhccChhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666555666778888999999999999999999999988862 24567888888899999887788999999
Q ss_pred hhcchhHHHHHHHhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhHhhcCCC
Q 024642 204 LTSDAGRASFISLFTVIVVPLFDGMLGAIIPAHTWFGVLISALGVGMLECSGS 256 (265)
Q Consensus 204 ~~tsa~~AavL~~l~Pvfv~lla~llker~s~~~~iGllLa~iGv~LL~~~G~ 256 (265)
+..+-+.+.-|-.+-|+.+.++. .+|. +..+-+.+++.|+.++.-.|.
T Consensus 93 ~riPlGiAVAiEF~GPL~vA~~~---sRr~--~d~vwvaLAvlGi~lL~p~~~ 140 (292)
T COG5006 93 ERIPLGIAVAIEFTGPLAVALLS---SRRL--RDFVWVALAVLGIWLLLPLGQ 140 (292)
T ss_pred HhccchhhhhhhhccHHHHHHHh---ccch--hhHHHHHHHHHHHHhheeccC
Confidence 99999999999999998887765 3443 344555667788888766553
No 36
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=97.89 E-value=0.00037 Score=63.94 Aligned_cols=127 Identities=15% Similarity=0.117 Sum_probs=105.4
Q ss_pred hhHHHHHHHHHHHHHhhhHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHhhhc-C---ChhhHHHHHHHHHHH-HHHHH
Q 024642 123 KIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWAR-D---DVKTRNAGIELGLWV-SLGYF 197 (265)
Q Consensus 123 ~~~g~lllll~~llWGss~i~~K~~l~~isP~~l~~lRfllAallLl~~~~~~r-~---~~r~~~~~~llGvll-~~~~~ 197 (265)
+..|..+.+.+..+|..+-+..|.+-+..+.-.-+.+-+++|+++.+|+-.... . ++.-+...+.+|++. .+-|.
T Consensus 146 Dp~Gv~~Al~AG~~Wa~YIv~G~r~g~~~~g~~g~a~gm~vAaviv~Pig~~~ag~~l~~p~ll~laLgvavlSSalPYs 225 (292)
T COG5006 146 DPVGVALALGAGACWALYIVLGQRAGRAEHGTAGVAVGMLVAALIVLPIGAAQAGPALFSPSLLPLALGVAVLSSALPYS 225 (292)
T ss_pred CHHHHHHHHHHhHHHHHHHHHcchhcccCCCchHHHHHHHHHHHHHhhhhhhhcchhhcChHHHHHHHHHHHHhcccchH
Confidence 367999999999999999999988766677777788889999999999887542 2 233344555666664 45688
Q ss_pred HHHHHHhhcchhHHHHHHHhHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHHhh
Q 024642 198 VEALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVG 249 (265)
Q Consensus 198 l~~~gL~~tsa~~AavL~~l~Pvfv~lla~l-lker~s~~~~iGllLa~iGv~ 249 (265)
+...+++..+...-+++.++.|.+..+.+++ ++|.++..||++++..+.+..
T Consensus 226 LEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsa 278 (292)
T COG5006 226 LEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASA 278 (292)
T ss_pred HHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999997 799999999999998777664
No 37
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=97.67 E-value=0.0018 Score=59.76 Aligned_cols=103 Identities=16% Similarity=0.151 Sum_probs=84.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhhhc---CChhhHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHhHHHHHHHHHHH
Q 024642 152 HPASFCAVRFVMSAIPFLPFVFWAR---DDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGM 228 (265)
Q Consensus 152 sP~~l~~lRfllAallLl~~~~~~r---~~~r~~~~~~llGvll~~~~~l~~~gL~~tsa~~AavL~~l~Pvfv~lla~l 228 (265)
.|..+++.-+....+.-.+.....+ .++..++..+..+++......+.+.+++|.+...-.++-+..|+.+++++.+
T Consensus 31 ~~~~lt~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~i~~p~~~~~ks~~~i~vmi~~~l 110 (303)
T PF08449_consen 31 FPLFLTFVQFAFNALFSFILLSLFKFPKSRKIPLKKYAILSFLFFLASVLSNAALKYISYPTQIVFKSSKPIPVMILGVL 110 (303)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhccccCCCcChHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHH
Confidence 3889999999888877766655433 2333456667778877777778889999999999999999999999999986
Q ss_pred -hcCcCcHHHHHHHHHHHHHhhHhhcC
Q 024642 229 -LGAIIPAHTWFGVLISALGVGMLECS 254 (265)
Q Consensus 229 -lker~s~~~~iGllLa~iGv~LL~~~ 254 (265)
+|||.++++++++++..+|+++....
T Consensus 111 ~~~k~y~~~~~~~v~li~~Gv~~~~~~ 137 (303)
T PF08449_consen 111 ILGKRYSRRQYLSVLLITIGVAIFTLS 137 (303)
T ss_pred hcCccccHHHHHHHHHHHhhHheeeec
Confidence 79999999999999999999887654
No 38
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=97.62 E-value=0.0016 Score=61.90 Aligned_cols=132 Identities=14% Similarity=0.013 Sum_probs=97.4
Q ss_pred hhHHHHHHHHHHHHHhhhHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHhhh-cC-----Ch--hhHHHHHHHHHHHHH
Q 024642 123 KIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWA-RD-----DV--KTRNAGIELGLWVSL 194 (265)
Q Consensus 123 ~~~g~lllll~~llWGss~i~~K~~l~~isP~~l~~lRfllAallLl~~~~~~-r~-----~~--r~~~~~~llGvll~~ 194 (265)
..+|.++++++++++|.+.+..+..+.+.++..+.+.=-+.+.++..+..... +. ++ +.+...+..++.++.
T Consensus 166 ~i~GDll~l~~a~lya~~nV~~E~~v~~~~~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~w~~~~~~~~v~~~~~lf~ 245 (334)
T PF06027_consen 166 PILGDLLALLGAILYAVSNVLEEKLVKKAPRVEFLGMLGLFGFIISGIQLAILERSGIESIHWTSQVIGLLVGYALCLFL 245 (334)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHheehhhhhccCCChhhHHHHHHHHHHHHH
Confidence 47899999999999999999999999998988887776667776666554322 21 12 222222333344455
Q ss_pred HHHHHHHHHhhcchhHHHHHHHhHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHHhhHhhcC
Q 024642 195 GYFVEALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLECS 254 (265)
Q Consensus 195 ~~~l~~~gL~~tsa~~AavL~~l~Pvfv~lla~l-lker~s~~~~iGllLa~iGv~LL~~~ 254 (265)
.|.+....+++++|....+=.-+..++..++..+ +++++++..++|.++.++|+++....
T Consensus 246 ~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~ 306 (334)
T PF06027_consen 246 FYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLA 306 (334)
T ss_pred HHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEcc
Confidence 6677778899888876655455567788888876 78999999999999999999887654
No 39
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.56 E-value=0.0032 Score=50.80 Aligned_cols=71 Identities=15% Similarity=0.172 Sum_probs=58.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcchhHH-HHHHHhHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHHhhHh
Q 024642 181 TRNAGIELGLWVSLGYFVEALGLLTSDAGRA-SFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGML 251 (265)
Q Consensus 181 ~~~~~~llGvll~~~~~l~~~gL~~tsa~~A-avL~~l~Pvfv~lla~l-lker~s~~~~iGllLa~iGv~LL 251 (265)
.+...+..-+.....|+++..+++..+.+.+ ++-.++.-+.+.+++.+ ++|+++..+++|+.+.++|++.+
T Consensus 34 ~~~~~~~~~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l 106 (109)
T PRK10650 34 RKIYGILSLAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI 106 (109)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence 3444444445556678888899999999999 77788888899999986 89999999999999999999876
No 40
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.26 E-value=0.0059 Score=50.05 Aligned_cols=68 Identities=13% Similarity=0.258 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHHHhhcchhHH-HHHHHhHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHHhhHhhcCC
Q 024642 188 LGLWVSLGYFVEALGLLTSDAGRA-SFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLECSG 255 (265)
Q Consensus 188 lGvll~~~~~l~~~gL~~tsa~~A-avL~~l~Pvfv~lla~l-lker~s~~~~iGllLa~iGv~LL~~~G 255 (265)
.-++....|+++..++++.+.+.| ++..++.-+.+.+++.+ ++|+++..+++|+.+.++|++++-..+
T Consensus 36 ~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~ 105 (120)
T PRK10452 36 MLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGT 105 (120)
T ss_pred HHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCC
Confidence 334445667888899999999998 66678888899999986 899999999999999999998886544
No 41
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.25 E-value=0.0059 Score=48.87 Aligned_cols=72 Identities=11% Similarity=0.047 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchhHH-HHHHHhHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHHhhHhhc
Q 024642 182 RNAGIELGLWVSLGYFVEALGLLTSDAGRA-SFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLEC 253 (265)
Q Consensus 182 ~~~~~llGvll~~~~~l~~~gL~~tsa~~A-avL~~l~Pvfv~lla~l-lker~s~~~~iGllLa~iGv~LL~~ 253 (265)
+...+..-++....|+++..+++..+.+.+ ++-.++--+.+.+++.+ +||+++..+++|+.+.++|++.+-.
T Consensus 29 ~~~~~~~i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l 102 (105)
T PRK11431 29 LTPSIITVTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKL 102 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc
Confidence 333333334445667888899999999998 77788888999999986 8999999999999999999988744
No 42
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=97.24 E-value=0.019 Score=53.09 Aligned_cols=128 Identities=14% Similarity=0.121 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHhh--ccCHHHHHHHHHHHHHHHHHHHHhh--hcC----------ChhhHHHHHHHHHH
Q 024642 126 SIFLLNVITIVYASDIPILKAAEE--IMHPASFCAVRFVMSAIPFLPFVFW--ARD----------DVKTRNAGIELGLW 191 (265)
Q Consensus 126 g~lllll~~llWGss~i~~K~~l~--~isP~~l~~lRfllAallLl~~~~~--~r~----------~~r~~~~~~llGvl 191 (265)
|++++++..++=|...+..+...+ +.++....++-.+.+.+++++.... .+. .+..+...++..+.
T Consensus 155 G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~~ 234 (303)
T PF08449_consen 155 GIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSLT 234 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHHH
Confidence 899999999999999999988875 7889999999999988887776655 321 11123343444444
Q ss_pred HHHHHHHHHHHHhhcchhHHHHHHHhHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHHhhHhhc
Q 024642 192 VSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLEC 253 (265)
Q Consensus 192 l~~~~~l~~~gL~~tsa~~AavL~~l~Pvfv~lla~l-lker~s~~~~iGllLa~iGv~LL~~ 253 (265)
...+..+.+.-.+..++-..+++..+--+++.+++.+ ++++++..+|+|+++.+.|+.+=..
T Consensus 235 ~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~ 297 (303)
T PF08449_consen 235 GALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSY 297 (303)
T ss_pred HHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHH
Confidence 4444444456678889999999999999999999986 7999999999999999999987443
No 43
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=97.23 E-value=0.002 Score=58.48 Aligned_cols=78 Identities=15% Similarity=0.215 Sum_probs=67.3
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHhHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHHhhHhhcCC
Q 024642 178 DVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLECSG 255 (265)
Q Consensus 178 ~~r~~~~~~llGvll~~~~~l~~~gL~~tsa~~AavL~~l~Pvfv~lla~l-lker~s~~~~iGllLa~iGv~LL~~~G 255 (265)
++|+.....+-+++......+.+.++++.+++.--++..+-.+++++++++ +|+|+++++|+++++.++|+.++-.++
T Consensus 13 ~~~~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~ 91 (244)
T PF04142_consen 13 SPKDTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSS 91 (244)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCC
Confidence 456666666667777777788899999999999999999999999999986 799999999999999999999876543
No 44
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.21 E-value=0.0046 Score=49.69 Aligned_cols=70 Identities=19% Similarity=0.210 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcchhHH-HHHHHhHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHHhhHhhc
Q 024642 184 AGIELGLWVSLGYFVEALGLLTSDAGRA-SFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLEC 253 (265)
Q Consensus 184 ~~~llGvll~~~~~l~~~gL~~tsa~~A-avL~~l~Pvfv~lla~l-lker~s~~~~iGllLa~iGv~LL~~ 253 (265)
+.++.-++....|.++..++++.+.+.| ++-.+.--+.+.+.+++ ++|+++..+++|+.+.++|++.+-.
T Consensus 32 ~~il~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~ 103 (106)
T COG2076 32 PSILTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKL 103 (106)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhh
Confidence 3333333445567888899999999999 78889999999999987 7999999999999999999988654
No 45
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.20 E-value=0.0069 Score=48.81 Aligned_cols=64 Identities=16% Similarity=0.220 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHhhcchhHH-HHHHHhHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHHhhHhhcC
Q 024642 191 WVSLGYFVEALGLLTSDAGRA-SFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLECS 254 (265)
Q Consensus 191 ll~~~~~l~~~gL~~tsa~~A-avL~~l~Pvfv~lla~l-lker~s~~~~iGllLa~iGv~LL~~~ 254 (265)
+....|.++..+++..+.+.| ++-.++.-+.+.+++++ ++|+++..+++|+.+.++|++++-..
T Consensus 39 ~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~ 104 (110)
T PRK09541 39 CYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLL 104 (110)
T ss_pred HHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 345567778899999999998 66677888888999986 89999999999999999999988654
No 46
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=97.18 E-value=0.0018 Score=52.66 Aligned_cols=108 Identities=17% Similarity=0.233 Sum_probs=73.0
Q ss_pred HHHHHHHhhhHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHHHHHHHH-HHHHHHHHHHHhhcchh
Q 024642 131 NVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLWV-SLGYFVEALGLLTSDAG 209 (265)
Q Consensus 131 ll~~llWGss~i~~K~~l~~isP~~l~~lRfllAallLl~~~~~~r~~~r~~~~~~llGvll-~~~~~l~~~gL~~tsa~ 209 (265)
++++++||.+.+++|.+....++..-.. ++.-....++ .+ +... +++.+ ..+...+++.+..++-+
T Consensus 2 l~Vg~~WG~Tnpfik~g~~~~~~~~~~~-~~~~~~~~Ll-------~n---~~y~--ipf~lNq~GSv~f~~~L~~~dlS 68 (113)
T PF10639_consen 2 LLVGILWGCTNPFIKRGSSGLEKVKASL-QLLQEIKFLL-------LN---PKYI--IPFLLNQSGSVLFFLLLGSADLS 68 (113)
T ss_pred eeehHHhcCchHHHHHHHhhcCCccchH-HHHHHHHHHH-------Hh---HHHH--HHHHHHHHHHHHHHHHHhcCCce
Confidence 4568899999999999887655444331 3222222111 11 2222 23332 23455667888889988
Q ss_pred HHHHHH-HhHHHHHHHHHHHhcCcC-cHHHHHHHHHHHHHhhHh
Q 024642 210 RASFIS-LFTVIVVPLFDGMLGAII-PAHTWFGVLISALGVGML 251 (265)
Q Consensus 210 ~AavL~-~l~Pvfv~lla~llker~-s~~~~iGllLa~iGv~LL 251 (265)
.+.-+. ++.-+++.+.+++++|+. +++.++|+++.+.|+.+.
T Consensus 69 lavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 69 LAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC 112 (113)
T ss_pred eeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence 888664 888999999999887654 688999999999999764
No 47
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=97.00 E-value=0.027 Score=52.20 Aligned_cols=123 Identities=20% Similarity=0.099 Sum_probs=82.9
Q ss_pred hHHHHHHHHHHHHHhhhHHHHHHHhhccCHHHHHHH---HHHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHHHHHHHHH
Q 024642 124 IRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAV---RFVMSAIPFLPFVFWARDDVKTRNAGIELGLWVSLGYFVEA 200 (265)
Q Consensus 124 ~~g~lllll~~llWGss~i~~K~~l~~isP~~l~~l---RfllAallLl~~~~~~r~~~r~~~~~~llGvll~~~~~l~~ 200 (265)
.++++.+++..+.+..+.++.|. .+++|....+- =++++++++..+. .+....|.....++.|++-..+..+++
T Consensus 137 ~kgi~~Ll~stigy~~Y~~~~~~--~~~~~~~~~lPqaiGm~i~a~i~~~~~-~~~~~~k~~~~nil~G~~w~ignl~~~ 213 (269)
T PF06800_consen 137 KKGILALLISTIGYWIYSVIPKA--FHVSGWSAFLPQAIGMLIGAFIFNLFS-KKPFFEKKSWKNILTGLIWGIGNLFYL 213 (269)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHh--cCCChhHhHHHHHHHHHHHHHHHhhcc-cccccccchHHhhHHHHHHHHHHHHHH
Confidence 67899999999999999888888 46676555442 2333333333222 112222334455667887777777778
Q ss_pred HHHhhcchhHHHHHHHhHHHHHHHHHHH-hcCcCcHHHH----HHHHHHHHHhh
Q 024642 201 LGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTW----FGVLISALGVG 249 (265)
Q Consensus 201 ~gL~~tsa~~AavL~~l~Pvfv~lla~l-lker~s~~~~----iGllLa~iGv~ 249 (265)
++.+....+.+=.+..+.+++..+.+.+ +||+-+++++ +|+++.++|.+
T Consensus 214 is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~i 267 (269)
T PF06800_consen 214 ISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAI 267 (269)
T ss_pred HhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhh
Confidence 8888888888888889999888888876 7998776655 44444445543
No 48
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=96.84 E-value=0.0015 Score=62.90 Aligned_cols=80 Identities=11% Similarity=0.130 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhcchhHHHHHHHhHHHHHHHHHHHh-cCcCcHHHHHHHHHHHHHhhHhhcCCC--------
Q 024642 186 IELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGML-GAIIPAHTWFGVLISALGVGMLECSGS-------- 256 (265)
Q Consensus 186 ~llGvll~~~~~l~~~gL~~tsa~~AavL~~l~Pvfv~lla~ll-ker~s~~~~iGllLa~iGv~LL~~~G~-------- 256 (265)
+.+..+=+.+.++...++.+|+++..+++.++.-+|+..++.++ .||++..+++++++.+.|++++..++.
T Consensus 163 l~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~~~~~~a 242 (416)
T KOG2765|consen 163 LFFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQNSDLPA 242 (416)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccccccCCc
Confidence 33333334556777899999999999999999999999999986 899999999999999999999877532
Q ss_pred -CCCcccccC
Q 024642 257 -PPSVSIFKS 265 (265)
Q Consensus 257 -~~~lGDlla 265 (265)
..-+||++|
T Consensus 243 ~~~llG~lla 252 (416)
T KOG2765|consen 243 SRPLLGNLLA 252 (416)
T ss_pred cchhHHHHHH
Confidence 234677664
No 49
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=96.73 E-value=0.045 Score=48.86 Aligned_cols=98 Identities=10% Similarity=0.059 Sum_probs=63.9
Q ss_pred HHHHHHHHHhhhHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHhhhc------CC-hhhHHHHHHHHHHHHHHHHHHHH
Q 024642 129 LLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWAR------DD-VKTRNAGIELGLWVSLGYFVEAL 201 (265)
Q Consensus 129 llll~~llWGss~i~~K~~l~~isP~~l~~lRfllAallLl~~~~~~r------~~-~r~~~~~~llGvll~~~~~l~~~ 201 (265)
..+++++.|+...+..|...+. ++......-+... .+..+...... .+ .++|...+..|+....+|.+++.
T Consensus 150 ~~l~aa~~~a~~~i~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~t~i~~~l~~~ 227 (256)
T TIGR00688 150 EALVLAFSFTAYGLIRKALKNT-DLAGFCLETLSLM-PVAIYYLLQTDFATVQQTNPFPIWLLLVLAGLITGTPLLAFVI 227 (256)
T ss_pred HHHHHHHHHHHHHHHHhhcCCC-CcchHHHHHHHHH-HHHHHHHHHhccCcccccCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788999999888886432 2222222111111 11111111111 11 23677777778776678999999
Q ss_pred HHhhcchhHHHHHHHhHHHHHHHHHHH
Q 024642 202 GLLTSDAGRASFISLFTVIVVPLFDGM 228 (265)
Q Consensus 202 gL~~tsa~~AavL~~l~Pvfv~lla~l 228 (265)
|+++.+++.++.+.++.|++..+++.+
T Consensus 228 a~~~~~a~~~s~~~yl~Pv~~~~~~~~ 254 (256)
T TIGR00688 228 AANRLPLNLLGLLQYIGPTIMMLCVSF 254 (256)
T ss_pred HHHcCChHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999865
No 50
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=96.58 E-value=0.11 Score=49.74 Aligned_cols=128 Identities=13% Similarity=0.185 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHhh-c---cCHHHHHHHHHHHHHHHHHHHHhhh-----cC-----------ChhhHHH
Q 024642 125 RSIFLLNVITIVYASDIPILKAAEE-I---MHPASFCAVRFVMSAIPFLPFVFWA-----RD-----------DVKTRNA 184 (265)
Q Consensus 125 ~g~lllll~~llWGss~i~~K~~l~-~---isP~~l~~lRfllAallLl~~~~~~-----r~-----------~~r~~~~ 184 (265)
.-.+.+++..+.++...+..|..-. + ..|....+.--++-.++.+.++++. ++ .+++...
T Consensus 15 ~k~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk 94 (345)
T KOG2234|consen 15 MKYLSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLK 94 (345)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHH
Confidence 3445666677789999999998643 3 5666666666666655555544433 11 1123333
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHhHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHHhhHhh
Q 024642 185 GIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLE 252 (265)
Q Consensus 185 ~~llGvll~~~~~l~~~gL~~tsa~~AavL~~l~Pvfv~lla~l-lker~s~~~~iGllLa~iGv~LL~ 252 (265)
..+=.++..+.+.+++.++.+.+++.-.+...+--+.++++..+ ++||++++||.++++.++|+.++-
T Consensus 95 ~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ 163 (345)
T KOG2234|consen 95 VSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQ 163 (345)
T ss_pred HHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHh
Confidence 33344455555558899999999999999999999999999986 899999999999999999999886
No 51
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=96.16 E-value=0.33 Score=45.45 Aligned_cols=123 Identities=8% Similarity=0.059 Sum_probs=90.7
Q ss_pred HHHHHHHhhhHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHhhh---c-----CChhhHHHHHHHHHHHHHHHHHHHHH
Q 024642 131 NVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWA---R-----DDVKTRNAGIELGLWVSLGYFVEALG 202 (265)
Q Consensus 131 ll~~llWGss~i~~K~~l~~isP~~l~~lRfllAallLl~~~~~~---r-----~~~r~~~~~~llGvll~~~~~l~~~g 202 (265)
+..++.||..+.+=|.. .+|+..-..+-.+.-...-+.++... . .+...+...+..|....+...++..|
T Consensus 154 l~la~sf~~Ygl~RK~~--~v~a~~g~~lE~l~l~p~al~yl~~l~~~~~~~~~~~~~~~~LLv~aG~vTavpL~lf~~a 231 (293)
T COG2962 154 LALALSFGLYGLLRKKL--KVDALTGLTLETLLLLPVALIYLLFLADSGQFLQQNANSLWLLLVLAGLVTAVPLLLFAAA 231 (293)
T ss_pred HHHHHHHHHHHHHHHhc--CCchHHhHHHHHHHHhHHHHHHHHHHhcCchhhhcCCchHHHHHHHhhHHHHHHHHHHHHH
Confidence 34455677777776663 56665555555544444333333322 1 13345667778888888888888899
Q ss_pred HhhcchhHHHHHHHhHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHHhhHhhcCC
Q 024642 203 LLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLECSG 255 (265)
Q Consensus 203 L~~tsa~~AavL~~l~Pvfv~lla~l-lker~s~~~~iGllLa~iGv~LL~~~G 255 (265)
-+..+-+.-+++++..|.+..+++.+ ++|.++..++++-+..-.|+++...++
T Consensus 232 a~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d~ 285 (293)
T COG2962 232 AKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSIDG 285 (293)
T ss_pred HhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999986 689999999999999999998877654
No 52
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=96.07 E-value=0.035 Score=52.01 Aligned_cols=118 Identities=15% Similarity=0.173 Sum_probs=82.4
Q ss_pred hhHHHHHHHHHHHHHhhhHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHHHHHHHH-HHHHHHHHH
Q 024642 123 KIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLWV-SLGYFVEAL 201 (265)
Q Consensus 123 ~~~g~lllll~~llWGss~i~~K~~l~~isP~~l~~lRfllAallLl~~~~~~r~~~r~~~~~~llGvll-~~~~~l~~~ 201 (265)
...|.++.+++.++-|.+..+.|......+. ...|---. .+...++.. ...|+.. ..+..+.+.
T Consensus 5 ~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~---~~~~~~~~----------~~~~l~~~~--W~~G~~~~~~g~~~~~~ 69 (300)
T PF05653_consen 5 FYIGVLLAVVSSIFIAVGFNLQKKSHLRLPR---GSLRAGSG----------GRSYLRRPL--WWIGLLLMVLGEILNFV 69 (300)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---ccccccch----------hhHHHhhHH--HHHHHHHHhcchHHHHH
Confidence 4679999999999999999999986443222 11110000 000011111 1233332 344566678
Q ss_pred HHhhcchhHHHHHHHhHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHHhhHhhcCC
Q 024642 202 GLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLECSG 255 (265)
Q Consensus 202 gL~~tsa~~AavL~~l~Pvfv~lla~l-lker~s~~~~iGllLa~iGv~LL~~~G 255 (265)
++.+.+++..+-+.++.-++..+++.+ +|||++++.++|.+++++|..++...+
T Consensus 70 Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~~ 124 (300)
T PF05653_consen 70 ALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIFA 124 (300)
T ss_pred HHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEeC
Confidence 999999999999999999999999986 799999999999999999998876543
No 53
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=96.00 E-value=0.5 Score=39.34 Aligned_cols=122 Identities=12% Similarity=0.063 Sum_probs=74.9
Q ss_pred HHHHHHHHHhhhHHHHHHHhhccC-HHHHHHHHHHHHHHHHHHHHhhhcC-Ch---hhH-HHHHHHHHHHHHHHHHHHHH
Q 024642 129 LLNVITIVYASDIPILKAAEEIMH-PASFCAVRFVMSAIPFLPFVFWARD-DV---KTR-NAGIELGLWVSLGYFVEALG 202 (265)
Q Consensus 129 llll~~llWGss~i~~K~~l~~is-P~~l~~lRfllAallLl~~~~~~r~-~~---r~~-~~~~llGvll~~~~~l~~~g 202 (265)
+.+++.++-+....+--..-+..+ |+..+++=+..+.+++..+....+. +. ++. ++..+-|++....-.+....
T Consensus 5 la~~aG~~i~~q~~~N~~L~~~~gs~~~as~i~~~~G~i~~~i~~~~~~~~~~~~~~~~p~w~~lGG~lG~~~V~~~~~~ 84 (138)
T PF04657_consen 5 LALLAGALIALQAAFNGQLGKALGSPLVASFISFGVGFILLLIILLITGRPSLASLSSVPWWAYLGGLLGVFFVLSNIIL 84 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhcccccchhccCChHHhccHHHHHHHHHHHHHH
Confidence 334444444444444333334554 9999999999999988887765432 22 111 12222333322222344566
Q ss_pred HhhcchhHHHHH-HHhHHHHHHHHHHH--h---cCcCcHHHHHHHHHHHHHhhH
Q 024642 203 LLTSDAGRASFI-SLFTVIVVPLFDGM--L---GAIIPAHTWFGVLISALGVGM 250 (265)
Q Consensus 203 L~~tsa~~AavL-~~l~Pvfv~lla~l--l---ker~s~~~~iGllLa~iGv~L 250 (265)
+....++.+..+ ..-+-+...++..+ + +++++..+++|+++.++|+.+
T Consensus 85 vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 85 VPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 777777777644 35556666666664 3 678899999999999999864
No 54
>PRK13499 rhamnose-proton symporter; Provisional
Probab=95.95 E-value=0.34 Score=46.51 Aligned_cols=131 Identities=18% Similarity=0.124 Sum_probs=77.1
Q ss_pred hhHHHHHHHHHHHHHhhhH-------HHHHHHh-hccCHHHHHHHHHH---HHHHHHHH-HHh---hhcCC------h--
Q 024642 123 KIRSIFLLNVITIVYASDI-------PILKAAE-EIMHPASFCAVRFV---MSAIPFLP-FVF---WARDD------V-- 179 (265)
Q Consensus 123 ~~~g~lllll~~llWGss~-------i~~K~~l-~~isP~~l~~lRfl---lAallLl~-~~~---~~r~~------~-- 179 (265)
..||++.++++.+..+... +.-+... .+.+|.....--+. +++++.-+ +.. +++++ +
T Consensus 172 ~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~~g~~~~~~~lp~~~~~~~G~~~~n~~~~~~~~~k~~~~~~~~~~~~ 251 (345)
T PRK13499 172 LKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAALGVDPLYAALPSYVVIMGGGAITNLGFCFIRLAKNKDLSLKADFSL 251 (345)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccchhccc
Confidence 3689999999998877777 4444422 25666655555544 55554432 222 12111 1
Q ss_pred ------hhHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHH---HH-HhHHHHHHHHHHHhcCcCc------HHHHHHHHH
Q 024642 180 ------KTRNAGIELGLWVSLGYFVEALGLLTSDAGRASF---IS-LFTVIVVPLFDGMLGAIIP------AHTWFGVLI 243 (265)
Q Consensus 180 ------r~~~~~~llGvll~~~~~l~~~gL~~tsa~~Aav---L~-~l~Pvfv~lla~llker~s------~~~~iGllL 243 (265)
++....++.|++-+.++.++..|-.....+.+.+ +. .+..++..+.+.++||+-+ +..++|+++
T Consensus 252 ~~~~~~~n~l~~~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi~lkE~K~a~~k~~~~l~~G~vl 331 (345)
T PRK13499 252 AKPLLITNVLLSALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGLVLKEWKGASRRPVRVLSLGCVV 331 (345)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhhhhhhccCCCccchhHHHHHHHH
Confidence 1222335556655555555556666554443333 33 6777777777777877544 567888888
Q ss_pred HHHHhhHhhc
Q 024642 244 SALGVGMLEC 253 (265)
Q Consensus 244 a~iGv~LL~~ 253 (265)
.++|+.++..
T Consensus 332 iI~g~~lig~ 341 (345)
T PRK13499 332 IILAANIVGL 341 (345)
T ss_pred HHHHHHHHhh
Confidence 8999887754
No 55
>PRK13499 rhamnose-proton symporter; Provisional
Probab=95.83 E-value=0.31 Score=46.76 Aligned_cols=127 Identities=17% Similarity=0.068 Sum_probs=85.7
Q ss_pred hhHHHHHHHHHHHHHhhhHHHHHHHhhccC--HHHHHHHHHHHHHHHHHHHHh----h-------hcCChhhHHHHHHHH
Q 024642 123 KIRSIFLLNVITIVYASDIPILKAAEEIMH--PASFCAVRFVMSAIPFLPFVF----W-------ARDDVKTRNAGIELG 189 (265)
Q Consensus 123 ~~~g~lllll~~llWGss~i~~K~~l~~is--P~~l~~lRfllAallLl~~~~----~-------~r~~~r~~~~~~llG 189 (265)
...|++..++++++||+.++-.|. .++.+ -++.+. .+++. ++.++.. . +..+.+.+...++.|
T Consensus 5 ~~~G~~~~~i~~~~~GS~~~p~K~-~k~w~wE~~W~v~--gi~~w-l~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l~G 80 (345)
T PRK13499 5 IILGIIWHLIGGASSGSFYAPFKK-VKKWSWETMWSVG--GIFSW-LILPWLIAALLLPDFWAYYSSFSGSTLLPVFLFG 80 (345)
T ss_pred hHHHHHHHHHHHHHhhcccccccc-cCCCchhHHHHHH--HHHHH-HHHHHHHHHHHhhhHHHHHHhcCHHHHHHHHHHH
Confidence 467999999999999999999999 44444 222211 00111 1111111 0 112445567777888
Q ss_pred HHHHHHHHHHHHHHhhcchhHHH-HHHHhHHHHHHHHHHH-hcC-------cCcHHHHHHHHHHHHHhhHhhc
Q 024642 190 LWVSLGYFVEALGLLTSDAGRAS-FISLFTVIVVPLFDGM-LGA-------IIPAHTWFGVLISALGVGMLEC 253 (265)
Q Consensus 190 vll~~~~~l~~~gL~~tsa~~Aa-vL~~l~Pvfv~lla~l-lke-------r~s~~~~iGllLa~iGv~LL~~ 253 (265)
++-..+...++.++++...+.+- +-.+++-++..++..+ ++| +-....++|+++.++|+++...
T Consensus 81 ~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~ 153 (345)
T PRK13499 81 ALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGR 153 (345)
T ss_pred HHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 88778888888999998888885 4457777777777765 343 2225688999999999998876
No 56
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=95.78 E-value=0.074 Score=41.19 Aligned_cols=53 Identities=17% Similarity=0.322 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHhhcchhHH-HHHHHhHHHHHHHHHHH-hcCcCcHHHHHHHHH
Q 024642 191 WVSLGYFVEALGLLTSDAGRA-SFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLI 243 (265)
Q Consensus 191 ll~~~~~l~~~gL~~tsa~~A-avL~~l~Pvfv~lla~l-lker~s~~~~iGllL 243 (265)
+....+.++..+++..+.+.+ ++..++..+.+.+++.+ ++|+++..+++|+.+
T Consensus 38 ~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~l 92 (93)
T PF00893_consen 38 GYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGL 92 (93)
T ss_dssp HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHH
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheee
Confidence 345567788899999999999 77788999999999986 799999999999876
No 57
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=95.31 E-value=0.0096 Score=55.41 Aligned_cols=126 Identities=15% Similarity=0.138 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHhh----h-cCChhhHHHHHHHHHHHHHHHHHHH
Q 024642 126 SIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFW----A-RDDVKTRNAGIELGLWVSLGYFVEA 200 (265)
Q Consensus 126 g~lllll~~llWGss~i~~K~~l~~isP~~l~~lRfllAallLl~~~~~----~-r~~~r~~~~~~llGvll~~~~~l~~ 200 (265)
+.++.+..+++-+..++..|..-...+.+....+=-+++.+.-++.+.. . ...+||++..+.+|++.+.+..+..
T Consensus 192 gt~aai~s~lf~asvyIilR~iGk~~h~~msvsyf~~i~lV~s~I~~~~ig~~~lP~cgkdr~l~~~lGvfgfigQIllT 271 (346)
T KOG4510|consen 192 GTVAAISSVLFGASVYIILRYIGKNAHAIMSVSYFSLITLVVSLIGCASIGAVQLPHCGKDRWLFVNLGVFGFIGQILLT 271 (346)
T ss_pred chHHHHHhHhhhhhHHHHHHHhhccccEEEEehHHHHHHHHHHHHHHhhccceecCccccceEEEEEehhhhhHHHHHHH
Confidence 3455555565556667777776454444333333333333332222221 1 1235677766778888888888999
Q ss_pred HHHhhcchhHHHHHHHhHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHHhhHh
Q 024642 201 LGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGML 251 (265)
Q Consensus 201 ~gL~~tsa~~AavL~~l~Pvfv~lla~l-lker~s~~~~iGllLa~iGv~LL 251 (265)
.|+|.--||..+++.++..++..++-.+ +++-++.+.|.|++..+...+..
T Consensus 272 m~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~ 323 (346)
T KOG4510|consen 272 MGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWV 323 (346)
T ss_pred HHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHH
Confidence 9999999999999999999999999976 79999999999998865555443
No 58
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=95.18 E-value=0.004 Score=57.53 Aligned_cols=118 Identities=15% Similarity=0.186 Sum_probs=84.8
Q ss_pred HHhhhHHHHHHHhhcc-CHHHHHHHHHHHHHHHHHHHHhhhcCChhh-HHHHHHHHHHHHHHHHHHHHHHhhcchhHHHH
Q 024642 136 VYASDIPILKAAEEIM-HPASFCAVRFVMSAIPFLPFVFWARDDVKT-RNAGIELGLWVSLGYFVEALGLLTSDAGRASF 213 (265)
Q Consensus 136 lWGss~i~~K~~l~~i-sP~~l~~lRfllAallLl~~~~~~r~~~r~-~~~~~llGvll~~~~~l~~~gL~~tsa~~Aav 213 (265)
+=+.++..+-++-.++ .|..=.++-+.+-+++-.++...|++..+. |...+++++.-.-+.++...|.|||+-....+
T Consensus 30 ~t~~a~tss~la~k~iN~Pt~QtFl~Y~LLalVY~~~~~fR~~~~~~~~~hYilla~~DVEaNy~vV~AyQyTsmtSi~l 109 (336)
T KOG2766|consen 30 ITSTAFTSSELARKGINAPTSQTFLNYVLLALVYGPIMLFRRKYIKAKWRHYILLAFVDVEANYFVVKAYQYTSMTSIML 109 (336)
T ss_pred HHcchhhhHHHHhccCCCccHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHhhheeEEeecccEEEeeehhhcchHHHHH
Confidence 3344444444433323 466667778877778888887776643332 44566666654444455568999999999888
Q ss_pred HHHhHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHHhhHhhc
Q 024642 214 ISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLEC 253 (265)
Q Consensus 214 L~~l~Pvfv~lla~l-lker~s~~~~iGllLa~iGv~LL~~ 253 (265)
+-+-.-..+.+++|+ +|.|-+..++.|+++|++|+.+++.
T Consensus 110 LDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~ 150 (336)
T KOG2766|consen 110 LDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVF 150 (336)
T ss_pred HHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEE
Confidence 887777788899997 7999999999999999999988765
No 59
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.66 E-value=1 Score=42.63 Aligned_cols=119 Identities=11% Similarity=0.064 Sum_probs=77.0
Q ss_pred HHHHHHHhh--ccCHHHHH-HHHHHHHHHHHHHHHhhhc------CChhhHHHHHHHHHHHHHHHHHHHHHHhhcchhHH
Q 024642 141 IPILKAAEE--IMHPASFC-AVRFVMSAIPFLPFVFWAR------DDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRA 211 (265)
Q Consensus 141 ~i~~K~~l~--~isP~~l~-~lRfllAallLl~~~~~~r------~~~r~~~~~~llGvll~~~~~l~~~gL~~tsa~~A 211 (265)
-++-|.++. +.+...++ .+..+...+.+ .+..+.| .+++..+.-....+++......-..+++|.+...-
T Consensus 28 ~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v-~~lk~~~lv~~~~l~~~~~kk~~P~~~lf~~~i~t~~~slk~lnVpm~ 106 (314)
T KOG1444|consen 28 TVVNKIVLSSYNFPMGLLLMLLQSLASVLVV-LVLKRLGLVNFRPLDLRTAKKWFPVSLLFVGMLFTGSKSLKYLNVPMF 106 (314)
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH-HHHHHhceeecCCcChHHHHHHccHHHHHHHHHHHccccccccCchHH
Confidence 344477765 44444444 35555544444 3333222 23444333333444433322333488999999999
Q ss_pred HHHHHhHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHHhhHhhcCCCCCCc
Q 024642 212 SFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLECSGSPPSV 260 (265)
Q Consensus 212 avL~~l~Pvfv~lla~l-lker~s~~~~iGllLa~iGv~LL~~~G~~~~l 260 (265)
+++-.+.|+++++...+ +|.|+++..+.++.+..+|..+......+++.
T Consensus 107 tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~~d~sf~~ 156 (314)
T KOG1444|consen 107 TVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAFTDLSFNL 156 (314)
T ss_pred HHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhccccceecc
Confidence 99999999999999986 68899999999999999888776665545554
No 60
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=93.85 E-value=0.2 Score=47.52 Aligned_cols=122 Identities=8% Similarity=-0.017 Sum_probs=82.9
Q ss_pred hhhHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHhh-h-c-C------Chhh-HHHHHHHHHHHHHHHHHHHHHHhhcc
Q 024642 138 ASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFW-A-R-D------DVKT-RNAGIELGLWVSLGYFVEALGLLTSD 207 (265)
Q Consensus 138 Gss~i~~K~~l~~isP~~l~~lRfllAallLl~~~~~-~-r-~------~~r~-~~~~~llGvll~~~~~l~~~gL~~ts 207 (265)
|..|...+.-.+.-=|+.++..-.++=.++-....+. + + + +|++ ..+.+.+|+..+..-.+.+++++|++
T Consensus 30 ~Ltf~~~~~~~~f~fPLf~ts~h~~v~flfa~~~~~l~~~~~~r~r~~~sw~~~Lr~~aPtalata~DIGLSN~sl~yVt 109 (349)
T KOG1443|consen 30 GLTFYFKWLTKNFHFPLFVTSLHLAVKFLFAALSRRLYQCSVPRARVVLSWRDYLRRLAPTALATALDIGLSNWSLEYVT 109 (349)
T ss_pred HHHHHhhhhhcCcCCchHHHHHHHHHHHHHHHHHHHHHhccCCccccCCcHHHHHHHhhhhhhhhhcccccccceeeeee
Confidence 3445554443333347777776665544333322221 1 1 1 2333 34556777776666677889999999
Q ss_pred hhHHHHHHHhHHHHHHHHHHHhc-CcCcHHHHHHHHHHHHHhhHhhcCCCCCC
Q 024642 208 AGRASFISLFTVIVVPLFDGMLG-AIIPAHTWFGVLISALGVGMLECSGSPPS 259 (265)
Q Consensus 208 a~~AavL~~l~Pvfv~lla~llk-er~s~~~~iGllLa~iGv~LL~~~G~~~~ 259 (265)
.+.=+..=+..++|+.+++.++| |++++.-..-+++..+|+++.+.+..+++
T Consensus 110 lSlYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~KsTqf~ 162 (349)
T KOG1443|consen 110 LSLYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKSTQFN 162 (349)
T ss_pred eeeeeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEeccccee
Confidence 99888888999999999999885 88888888888888899988887765554
No 61
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=93.35 E-value=0.28 Score=46.50 Aligned_cols=129 Identities=16% Similarity=0.083 Sum_probs=94.6
Q ss_pred hhHHHHHHHHHHHHHhhhHHHHHHHhh----ccCHHHHHHHHHHHHHHHHH-HHHhhhcCChh------h----HHHHHH
Q 024642 123 KIRSIFLLNVITIVYASDIPILKAAEE----IMHPASFCAVRFVMSAIPFL-PFVFWARDDVK------T----RNAGIE 187 (265)
Q Consensus 123 ~~~g~lllll~~llWGss~i~~K~~l~----~isP~~l~~lRfllAallLl-~~~~~~r~~~r------~----~~~~~l 187 (265)
...|.+..+++.+....--+++|..+. .++++.+..+---++.++|+ |+......+.. . ....++
T Consensus 161 n~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (316)
T KOG1441|consen 161 NLFGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVTFLILLL 240 (316)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchhhHHHHH
Confidence 368999999999999999999999883 58999999999889999888 87654321111 1 112223
Q ss_pred HHHHHHHHHHHHHHHHhhcchhHHHHHHHhHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHHhhHh
Q 024642 188 LGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGML 251 (265)
Q Consensus 188 lGvll~~~~~l~~~gL~~tsa~~AavL~~l~Pvfv~lla~l-lker~s~~~~iGllLa~iGv~LL 251 (265)
..++....+...+.-+..++|-+=.+....=-+++.+.+++ ++++++..+.+|.+++++|+.+-
T Consensus 241 ~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y 305 (316)
T KOG1441|consen 241 NSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLY 305 (316)
T ss_pred HHHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHH
Confidence 33444444455667788888877776666666666777765 78899999999999999999874
No 62
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.10 E-value=5 Score=34.21 Aligned_cols=126 Identities=11% Similarity=0.115 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHhhhHHHHHHHhhcc-CHHHHHHHHHHHHHHHHHHHHhhhc--CCh----hhHHHHHHHHHHHHHHHHHH
Q 024642 127 IFLLNVITIVYASDIPILKAAEEIM-HPASFCAVRFVMSAIPFLPFVFWAR--DDV----KTRNAGIELGLWVSLGYFVE 199 (265)
Q Consensus 127 ~lllll~~llWGss~i~~K~~l~~i-sP~~l~~lRfllAallLl~~~~~~r--~~~----r~~~~~~llGvll~~~~~l~ 199 (265)
.+..+++..+-..-..+--...+.. +|+...+.-|+.+.+++..+...+. ... +.-++..+-|++ ...|.+-
T Consensus 7 ll~~i~aG~~l~~Q~~iN~qL~~~~~spl~As~isf~vGt~~L~~l~l~~~~~~~~a~~~~~pwW~~~GG~l-Ga~~vt~ 85 (150)
T COG3238 7 LLFAILAGALLPLQAAINGRLARYLGSPLLASLISFLVGTVLLLILLLIKQGHPGLAAVASAPWWAWIGGLL-GAIFVTS 85 (150)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhccCCchHHHHccch-hhhhhhh
Confidence 3344444443333333332222333 5999999999999988887766532 111 111222223322 2222221
Q ss_pred -HHHHhhcchhH-HHHHHHhHHHHHHHHHHH--h---cCcCcHHHHHHHHHHHHHhhHhhc
Q 024642 200 -ALGLLTSDAGR-ASFISLFTVIVVPLFDGM--L---GAIIPAHTWFGVLISALGVGMLEC 253 (265)
Q Consensus 200 -~~gL~~tsa~~-AavL~~l~Pvfv~lla~l--l---ker~s~~~~iGllLa~iGv~LL~~ 253 (265)
........++. .+++.+-+-+...++..+ + +++++..+++|+++.++|++++..
T Consensus 86 s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~~ 146 (150)
T COG3238 86 SILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLARR 146 (150)
T ss_pred hHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhcc
Confidence 12222333333 345556666667777654 3 567889999999999999655433
No 63
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=93.03 E-value=0.069 Score=50.58 Aligned_cols=110 Identities=15% Similarity=0.138 Sum_probs=80.9
Q ss_pred HHHHhh--c-cCHHHHHHHHHHHHHHHHHHHHhhh-cC--C---hhhHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHH
Q 024642 144 LKAAEE--I-MHPASFCAVRFVMSAIPFLPFVFWA-RD--D---VKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFI 214 (265)
Q Consensus 144 ~K~~l~--~-isP~~l~~lRfllAallLl~~~~~~-r~--~---~r~~~~~~llGvll~~~~~l~~~gL~~tsa~~AavL 214 (265)
-|.+++ + --|..++.+.+..+.+.++..-..+ .+ + +..+...+.+|++...+-.+-+.++.+.+++-.-.+
T Consensus 36 nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~~~~~~~~~~~llpl~~~~~~~~v~~n~Sl~~v~VsF~q~i 115 (316)
T KOG1441|consen 36 NKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLVPPSKISSKLPLRTLLPLGLVFCISHVLGNVSLSYVPVSFYQTI 115 (316)
T ss_pred eHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHHHHHHHhcchhhhccchhHHHHH
Confidence 377666 3 3488888887777777666554433 11 1 123666677888877777788899999999999999
Q ss_pred HHhHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHHhhHhhc
Q 024642 215 SLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLEC 253 (265)
Q Consensus 215 ~~l~Pvfv~lla~l-lker~s~~~~iGllLa~iGv~LL~~ 253 (265)
=+++|+++.+++++ .+|+.++..++.++....|+.+-..
T Consensus 116 Ka~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~ 155 (316)
T KOG1441|consen 116 KALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASV 155 (316)
T ss_pred HhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeee
Confidence 99999999999997 5888887766666666666655444
No 64
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=92.70 E-value=0.16 Score=45.76 Aligned_cols=58 Identities=19% Similarity=0.203 Sum_probs=53.2
Q ss_pred HHHHHHHHhhcchhHHHHHHHhHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHHhhHhhc
Q 024642 196 YFVEALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLEC 253 (265)
Q Consensus 196 ~~l~~~gL~~tsa~~AavL~~l~Pvfv~lla~l-lker~s~~~~iGllLa~iGv~LL~~ 253 (265)
.+.+..+++..+++.++-+.++.-.|+.+++++ +|+|+...++++.++++.|++++..
T Consensus 67 NY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay 125 (290)
T KOG4314|consen 67 NYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAY 125 (290)
T ss_pred CcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEe
Confidence 455668999999999999999999999999997 8999999999999999999998874
No 65
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=91.67 E-value=1.2 Score=41.97 Aligned_cols=116 Identities=20% Similarity=0.253 Sum_probs=80.3
Q ss_pred hhhHHHHHHHhh----cc----CHHHHHHHHHHHHHHHHHHHHhhhcC-Ch------------hh---HHHH--HHHHHH
Q 024642 138 ASDIPILKAAEE----IM----HPASFCAVRFVMSAIPFLPFVFWARD-DV------------KT---RNAG--IELGLW 191 (265)
Q Consensus 138 Gss~i~~K~~l~----~i----sP~~l~~lRfllAallLl~~~~~~r~-~~------------r~---~~~~--~llGvl 191 (265)
..+-++.|.+-+ .. .|+..+..=|+-=++++..+...+++ +. ++ .... +.=.++
T Consensus 16 s~Ntl~aKwadsi~~eg~pgfqhpvlqal~mFlGEflCl~vf~lir~~sn~~g~~s~~~~ilsq~~~pf~p~lfl~Pal~ 95 (372)
T KOG3912|consen 16 SFNTLVAKWADSIQAEGSPGFQHPVLQALLMFLGEFLCLAVFKLIRLRSNGQGVSSDLDSILSQDSSPFNPVLFLPPALC 95 (372)
T ss_pred cHHHHHHHHHHhhhhhCCCccccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccccccccCCCCcceecChHHH
Confidence 345677787632 22 47777777777777777777665421 10 11 1111 111233
Q ss_pred HHHHHHHHHHHHhhcchhHHHHHHHhHHHHHHHHHH-HhcCcCcHHHHHHHHHHHHHhhHhhc
Q 024642 192 VSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLEC 253 (265)
Q Consensus 192 l~~~~~l~~~gL~~tsa~~AavL~~l~Pvfv~lla~-llker~s~~~~iGllLa~iGv~LL~~ 253 (265)
-..+-.+++.|+.+|+++.--.+-+..-+|+.+++. ++++++..++|+|+.....|++++..
T Consensus 96 Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~ 158 (372)
T KOG3912|consen 96 DIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGS 158 (372)
T ss_pred HHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeee
Confidence 234456778999999999888888888999999997 48999999999999999999987644
No 66
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=91.11 E-value=0.36 Score=42.33 Aligned_cols=58 Identities=17% Similarity=0.201 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHhhcchhHHHHHHHhHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHHhhH
Q 024642 193 SLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGM 250 (265)
Q Consensus 193 ~~~~~l~~~gL~~tsa~~AavL~~l~Pvfv~lla~l-lker~s~~~~iGllLa~iGv~L 250 (265)
..+..+...-+++.++..-++...+.++++.+++.+ ++++++..+++|+.+.+.|+.+
T Consensus 163 a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l 221 (222)
T TIGR00803 163 VGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL 221 (222)
T ss_pred HhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence 334445567889999999999999999999999986 7999999999999999998753
No 67
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=90.70 E-value=0.62 Score=37.79 Aligned_cols=111 Identities=13% Similarity=0.110 Sum_probs=67.4
Q ss_pred HHHHHHHHHHhhhHHHHHHHhhccCH------HHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHHHHHHHHHH
Q 024642 128 FLLNVITIVYASDIPILKAAEEIMHP------ASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLWVSLGYFVEAL 201 (265)
Q Consensus 128 lllll~~llWGss~i~~K~~l~~isP------~~l~~lRfllAallLl~~~~~~r~~~r~~~~~~llGvll~~~~~l~~~ 201 (265)
..++.++++||...+++|.+...++- -...++|-..... .+++.+. -+++- -.+..+++.
T Consensus 6 ~~lvaVgllWG~Tnplirrgs~g~~~v~~~~~k~~~~lqe~~tl~----------l~w~Y~i---PFllN-qcgSaly~~ 71 (125)
T KOG4831|consen 6 DKLVAVGLLWGATNPLIRRGSLGWDKVKSSSRKIMIALQEMKTLF----------LNWEYLI---PFLLN-QCGSALYYL 71 (125)
T ss_pred HHHHHHHHHHccccHHHHHHHhhHhhccCchHHHHHHHHHHHHHH----------HhHHHHH---HHHHH-HhhHHHHHH
Confidence 45677889999999999997653321 2222222211110 0112222 22221 112334456
Q ss_pred HHhhcchhHHH-HHHHhHHHHHHHHHHHhcCcCc-HHHHHHHHHHHHHhhHhh
Q 024642 202 GLLTSDAGRAS-FISLFTVIVVPLFDGMLGAIIP-AHTWFGVLISALGVGMLE 252 (265)
Q Consensus 202 gL~~tsa~~Aa-vL~~l~Pvfv~lla~llker~s-~~~~iGllLa~iGv~LL~ 252 (265)
-++.++-+.+. +-.++.-.|+.+.+..++|+.+ ++.++|..+...|+.+.+
T Consensus 72 tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~Lci 124 (125)
T KOG4831|consen 72 TLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWLCI 124 (125)
T ss_pred HHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhhee
Confidence 67777666665 4456777888899988998876 789999999999987643
No 68
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=90.45 E-value=4.4 Score=38.49 Aligned_cols=128 Identities=13% Similarity=0.054 Sum_probs=88.4
Q ss_pred hhHHHHHHHHHHHHHhhhHHHHHHHhh--ccCHHHHHHHHHHHHHHHHHHHHhhhc----------CChhhHHHHHHHHH
Q 024642 123 KIRSIFLLNVITIVYASDIPILKAAEE--IMHPASFCAVRFVMSAIPFLPFVFWAR----------DDVKTRNAGIELGL 190 (265)
Q Consensus 123 ~~~g~lllll~~llWGss~i~~K~~l~--~isP~~l~~lRfllAallLl~~~~~~r----------~~~r~~~~~~llGv 190 (265)
...|+.+++.--++=|......+-+.. .++++.+.+.--+..++.=...+.-.+ ..+.-++..++...
T Consensus 170 s~~G~~Ll~~~L~fDgfTn~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~li~qg~~~~av~F~~~hp~~~~Di~l~s~ 249 (327)
T KOG1581|consen 170 SPIGILLLFGYLLFDGFTNATQDSLFKKYKVSSLHMMFGVNLFSAILNGTYLILQGHLLPAVSFIKEHPDVAFDILLYST 249 (327)
T ss_pred chHhHHHHHHHHHHHhhHHhHHHHHhccCCccHhHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHcChhHHHHHHHHHH
Confidence 356777777666666777766666554 688888888777776665554433222 12233455566666
Q ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHhHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHHhhH
Q 024642 191 WVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGM 250 (265)
Q Consensus 191 ll~~~~~l~~~gL~~tsa~~AavL~~l~Pvfv~lla~l-lker~s~~~~iGllLa~iGv~L 250 (265)
+..++..+.+..++.-.+-.-+.|+.+-=++..+++.+ ++++++..+|+|+++.|.|+.+
T Consensus 250 ~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l 310 (327)
T KOG1581|consen 250 CGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFL 310 (327)
T ss_pred hhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHH
Confidence 66666666667777655555556666677788888876 8999999999999999999976
No 69
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=89.98 E-value=2.8 Score=40.87 Aligned_cols=132 Identities=13% Similarity=0.083 Sum_probs=90.4
Q ss_pred hHHHHHHHHHHHHHhhhHHHHHHHhh----ccCHHHHHHHHHHHHHHHHHHHHhhh---cCC------hhhHHHHHHHHH
Q 024642 124 IRSIFLLNVITIVYASDIPILKAAEE----IMHPASFCAVRFVMSAIPFLPFVFWA---RDD------VKTRNAGIELGL 190 (265)
Q Consensus 124 ~~g~lllll~~llWGss~i~~K~~l~----~isP~~l~~lRfllAallLl~~~~~~---r~~------~r~~~~~~llGv 190 (265)
..|.++.+++++++|..-++.|.=.+ .+|--.+-.+=-++..++++|.++.- +.+ ..+....++.|.
T Consensus 246 llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~~~q~~~vv~~~l 325 (416)
T KOG2765|consen 246 LLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPSSTQFSLVVFNNL 325 (416)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCCCceeEeeeHhhH
Confidence 67999999999999999999988554 35555555555666677777554421 211 112222223333
Q ss_pred HH-HHHHHHHHHHHhhcchhHHHHHHHhHHHHHHHHHHHh-cCcCcHHHHHHHHHHHHHhhHhhcCC
Q 024642 191 WV-SLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGML-GAIIPAHTWFGVLISALGVGMLECSG 255 (265)
Q Consensus 191 ll-~~~~~l~~~gL~~tsa~~AavL~~l~Pvfv~lla~ll-ker~s~~~~iGllLa~iGv~LL~~~G 255 (265)
+. .+.=++|..|.-+|++-.+++=++++.-..++.-.++ ++.++...++|.+..++|.+++...+
T Consensus 326 igtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~ 392 (416)
T KOG2765|consen 326 IGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISS 392 (416)
T ss_pred HHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheeccc
Confidence 32 2233577899999999988877766655666666666 56788999999999999998876544
No 70
>PRK02237 hypothetical protein; Provisional
Probab=89.69 E-value=6.2 Score=31.96 Aligned_cols=49 Identities=18% Similarity=0.260 Sum_probs=34.2
Q ss_pred cchhHH-HHHHHhHHHHHHHHHHHh-cCcCcHHHHHHHHHHHHHhhHhhcC
Q 024642 206 SDAGRA-SFISLFTVIVVPLFDGML-GAIIPAHTWFGVLISALGVGMLECS 254 (265)
Q Consensus 206 tsa~~A-avL~~l~Pvfv~lla~ll-ker~s~~~~iGllLa~iGv~LL~~~ 254 (265)
.+.+++ +.--+...+...+..|+. ++|+++..++|..++++|+.++...
T Consensus 56 ~~~GRvYAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~ 106 (109)
T PRK02237 56 AAFGRVYAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYA 106 (109)
T ss_pred hhhhhHHHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheec
Confidence 334444 233344455555666654 8899999999999999999888653
No 71
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.98 E-value=0.056 Score=51.22 Aligned_cols=121 Identities=13% Similarity=0.119 Sum_probs=84.2
Q ss_pred hhh-hhhHHHHHHHHHHHHHhhhHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHhhhcCChhh-HHHHHHHHHHH-HHH
Q 024642 119 FAS-KKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVKT-RNAGIELGLWV-SLG 195 (265)
Q Consensus 119 ~m~-~~~~g~lllll~~llWGss~i~~K~~l~~isP~~l~~lRfllAallLl~~~~~~r~~~r~-~~~~~llGvll-~~~ 195 (265)
.|+ +...|.++.+...++-|+++++-|.+..+... ...|..-+.- .-.++ +++ .|++. .++
T Consensus 14 ~~~~d~~~G~~LaissS~~Ig~sfilkKkgl~r~~~---~~~ra~~gg~----------~yl~~~~Ww---~G~ltm~vG 77 (335)
T KOG2922|consen 14 RMSSDNIIGLVLAISSSIFIGSSFILKKKGLKRAGA---SGLRAGEGGY----------GYLKEPLWW---AGMLTMIVG 77 (335)
T ss_pred hhccCceeeeeehhhccEEEeeehhhhHHHHHHHhh---hcccccCCCc----------chhhhHHHH---HHHHHHHHH
Confidence 454 45889999999999999999999996543322 2222111110 11122 222 23332 233
Q ss_pred HHHHHHHHhhcchhHHHHHHHhHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHHhhHhhcCC
Q 024642 196 YFVEALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLECSG 255 (265)
Q Consensus 196 ~~l~~~gL~~tsa~~AavL~~l~Pvfv~lla~l-lker~s~~~~iGllLa~iGv~LL~~~G 255 (265)
-..-|.+..+.+++..+-+.++..++..+++.. ++|+++....+|.+++++|-.+++..+
T Consensus 78 ei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~ha 138 (335)
T KOG2922|consen 78 EIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHA 138 (335)
T ss_pred hHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEec
Confidence 344456677888888888889999999999975 799999999999999999999888754
No 72
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=87.79 E-value=5.8 Score=36.78 Aligned_cols=131 Identities=10% Similarity=0.011 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHhh--ccCHHHHHHHHHHHHHHHHHHHHhhhc----------CChhhHHHHHHHHHHH
Q 024642 125 RSIFLLNVITIVYASDIPILKAAEE--IMHPASFCAVRFVMSAIPFLPFVFWAR----------DDVKTRNAGIELGLWV 192 (265)
Q Consensus 125 ~g~lllll~~llWGss~i~~K~~l~--~isP~~l~~lRfllAallLl~~~~~~r----------~~~r~~~~~~llGvll 192 (265)
.|.+++++.-.+=|....+....-. .-+.-.+.+.-.+-+.+.|..-+...+ +....+....++++..
T Consensus 172 ~GElLL~lSL~mDGlTg~~Qdrira~yq~~g~~MM~~~NlwStL~Lg~g~lfTGElweF~yF~~RhP~~~~~l~l~ai~s 251 (337)
T KOG1580|consen 172 FGELLLILSLAMDGLTGSIQDRIRASYQRTGTSMMFYTNLWSTLYLGAGLLFTGELWEFFYFVQRHPYVFWDLTLLAIAS 251 (337)
T ss_pred hHHHHHHHHHHhcccchhHHHHHHHhhccCchhhHHHHHHHHHHHhhhhheehhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4667777777777777776644322 122233333333333333332222111 2223355566677776
Q ss_pred HHHHHHHHHHHhhcchhHHHHHHHhHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHHhhHhhcCC
Q 024642 193 SLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLECSG 255 (265)
Q Consensus 193 ~~~~~l~~~gL~~tsa~~AavL~~l~Pvfv~lla~l-lker~s~~~~iGllLa~iGv~LL~~~G 255 (265)
.++..+.+..+.+-++-.-+++..+--+|+.+++.+ ++..++.+||+|..+.+.|+.+=..+|
T Consensus 252 ~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D~~~G 315 (337)
T KOG1580|consen 252 CLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTADVVDG 315 (337)
T ss_pred HhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHhhcC
Confidence 666667777888877777788888889999999986 799999999999999999987755444
No 73
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=87.56 E-value=11 Score=30.52 Aligned_cols=52 Identities=19% Similarity=0.347 Sum_probs=36.8
Q ss_pred HhhcchhHH-HHHHHhHHHHHHHHHHHh-cCcCcHHHHHHHHHHHHHhhHhhcC
Q 024642 203 LLTSDAGRA-SFISLFTVIVVPLFDGML-GAIIPAHTWFGVLISALGVGMLECS 254 (265)
Q Consensus 203 L~~tsa~~A-avL~~l~Pvfv~lla~ll-ker~s~~~~iGllLa~iGv~LL~~~ 254 (265)
++-.+.+++ +.--+...+...+..|.. ++||++..++|..++++|+.++...
T Consensus 51 l~p~~fGRvYAAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~ 104 (107)
T PF02694_consen 51 LQPAAFGRVYAAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFA 104 (107)
T ss_pred cCcccchhHHHHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEec
Confidence 444445554 333455555566666654 8899999999999999999988764
No 74
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=85.97 E-value=1.2 Score=41.18 Aligned_cols=79 Identities=10% Similarity=-0.014 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhcchhHHHHHHHhHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHHhhHhhcCCC--------
Q 024642 186 IELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLECSGS-------- 256 (265)
Q Consensus 186 ~llGvll~~~~~l~~~gL~~tsa~~AavL~~l~Pvfv~lla~l-lker~s~~~~iGllLa~iGv~LL~~~G~-------- 256 (265)
+.+++-.-..+..-+.+++|.+=-+..+--+.-|+=+++++.+ .+++.++++...+++.++|+++...+.+
T Consensus 89 aAcs~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~Kv~g~e~~ 168 (337)
T KOG1580|consen 89 AACSASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKENKVGGAEDK 168 (337)
T ss_pred HHHHHHHHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhccccccCCCccc
Confidence 3444444344566678999988777766678899999999987 5788999999999999999999887522
Q ss_pred CCCccccc
Q 024642 257 PPSVSIFK 264 (265)
Q Consensus 257 ~~~lGDll 264 (265)
.+.+|+++
T Consensus 169 t~g~GElL 176 (337)
T KOG1580|consen 169 TFGFGELL 176 (337)
T ss_pred ccchHHHH
Confidence 46677754
No 75
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=84.58 E-value=11 Score=30.32 Aligned_cols=37 Identities=16% Similarity=0.248 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHh-cCcCcHHHHHHHHHHHHHhhHhhcC
Q 024642 218 TVIVVPLFDGML-GAIIPAHTWFGVLISALGVGMLECS 254 (265)
Q Consensus 218 ~Pvfv~lla~ll-ker~s~~~~iGllLa~iGv~LL~~~ 254 (265)
..+...+..++. +.++.+..|+|..++++|+.++...
T Consensus 68 yI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil~~ 105 (109)
T COG1742 68 YIAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVILFG 105 (109)
T ss_pred HHHHHHHHHHHHcCcCCcHHHhhhHHHHHhceeeeEeC
Confidence 333444444554 7899999999999999999887654
No 76
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=80.38 E-value=26 Score=32.67 Aligned_cols=76 Identities=9% Similarity=0.154 Sum_probs=58.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHH-HHhHHHHHHHHHHH-hcCcCcHH----HHHHHHHHHHHhhHhhc
Q 024642 180 KTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFI-SLFTVIVVPLFDGM-LGAIIPAH----TWFGVLISALGVGMLEC 253 (265)
Q Consensus 180 r~~~~~~llGvll~~~~~l~~~gL~~tsa~~AavL-~~l~Pvfv~lla~l-lker~s~~----~~iGllLa~iGv~LL~~ 253 (265)
+.+...++.|++-..+...++.++++...+++-=+ .+++-+.+.+++.+ |+|-.+.. -.+++++.++|+.+...
T Consensus 43 ~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~ 122 (269)
T PF06800_consen 43 TSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSY 122 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhcc
Confidence 56778888898888888899999999888887644 47778888888876 78855532 34577788889988766
Q ss_pred CC
Q 024642 254 SG 255 (265)
Q Consensus 254 ~G 255 (265)
.+
T Consensus 123 ~~ 124 (269)
T PF06800_consen 123 QD 124 (269)
T ss_pred cc
Confidence 43
No 77
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=77.81 E-value=47 Score=31.90 Aligned_cols=128 Identities=15% Similarity=0.119 Sum_probs=75.6
Q ss_pred hHHHHHHHHHHHHHhhhHHHHHHHhhccC-----HHHHHHHHHHHHHHHHHHHHhh-hcC-------Ch--h---h-HHH
Q 024642 124 IRSIFLLNVITIVYASDIPILKAAEEIMH-----PASFCAVRFVMSAIPFLPFVFW-ARD-------DV--K---T-RNA 184 (265)
Q Consensus 124 ~~g~lllll~~llWGss~i~~K~~l~~is-----P~~l~~lRfllAallLl~~~~~-~r~-------~~--r---~-~~~ 184 (265)
..|.++...+.++=|.-|.+.+..+++-+ |+.....=.-.=++.++|..+. .+. .+ + + ++.
T Consensus 163 i~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~rv 242 (349)
T KOG1443|consen 163 IEGFFLVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLILRV 242 (349)
T ss_pred ehhHHHHHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHHHH
Confidence 56888888889999999999999886433 5555444333334444444332 221 01 1 1 111
Q ss_pred HHHHHHHHHHHHH---HHHHHHhhcchhHHHHHHHhHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHHhhHh
Q 024642 185 GIELGLWVSLGYF---VEALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGML 251 (265)
Q Consensus 185 ~~llGvll~~~~~---l~~~gL~~tsa~~AavL~~l~Pvfv~lla~l-lker~s~~~~iGllLa~iGv~LL 251 (265)
...++......|. ..+.=+..|+.-..++..-.--+.+.+++.+ .+++++-..|.|..++..|+.+=
T Consensus 243 ~g~i~l~g~laF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~ 313 (349)
T KOG1443|consen 243 IGLISLGGLLAFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLH 313 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHh
Confidence 1112221112222 2233334455555555555556677777765 68999999999999999999875
No 78
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=76.12 E-value=2.2 Score=39.50 Aligned_cols=125 Identities=13% Similarity=0.109 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHhhhHHHH-HHHhhccCHHHHHHHHHHHHHHHHHHHHhh-hc--CChhhHHHHHHHHHHHHHHHHHHH
Q 024642 125 RSIFLLNVITIVYASDIPIL-KAAEEIMHPASFCAVRFVMSAIPFLPFVFW-AR--DDVKTRNAGIELGLWVSLGYFVEA 200 (265)
Q Consensus 125 ~g~lllll~~llWGss~i~~-K~~l~~isP~~l~~lRfllAallLl~~~~~-~r--~~~r~~~~~~llGvll~~~~~l~~ 200 (265)
..++.+++-++.||+...+. |. .-+|..=+.- ..++++++.+.++. .. ...+.+...++.|.+=..+...++
T Consensus 2 ~~~liaL~P~l~WGsip~v~~k~---GG~p~qQ~lG-tT~GALifaiiv~~~~~p~~T~~~~iv~~isG~~Ws~GQ~~Qf 77 (288)
T COG4975 2 MDLLIALLPALGWGSIPLVANKF---GGKPYQQTLG-TTLGALIFAIIVFLFVSPELTLTIFIVGFISGAFWSFGQANQF 77 (288)
T ss_pred hhHHHHHHHHHHhcccceeeeec---CCChhHhhhh-ccHHHHHHHHHHheeecCccchhhHHHHHHhhhHhhhhhhhhh
Confidence 35677888899999987665 54 2333332222 22334433333332 22 345666777777777677778889
Q ss_pred HHHhhcchhHHHHH-HHhHHHHHHHHHHH-hcCcCcH----HHHHHHHHHHHHhhHhhc
Q 024642 201 LGLLTSDAGRASFI-SLFTVIVVPLFDGM-LGAIIPA----HTWFGVLISALGVGMLEC 253 (265)
Q Consensus 201 ~gL~~tsa~~AavL-~~l~Pvfv~lla~l-lker~s~----~~~iGllLa~iGv~LL~~ 253 (265)
.++++..++++-=+ .+++-+-+.+++.+ ++|-.+. ...+++++.++|+.+-..
T Consensus 78 ka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~ 136 (288)
T COG4975 78 KAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSK 136 (288)
T ss_pred hheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeee
Confidence 99999999998644 46777777888876 7875442 244566677788877554
No 79
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=74.97 E-value=69 Score=30.96 Aligned_cols=130 Identities=12% Similarity=0.074 Sum_probs=77.2
Q ss_pred hhHHHHHHHHHHHHHhhhHHHHHHHhh-ccCHHHHHHHHHHHHHHHHHHHHhhh--cC---------ChhhHHHHHHHHH
Q 024642 123 KIRSIFLLNVITIVYASDIPILKAAEE-IMHPASFCAVRFVMSAIPFLPFVFWA--RD---------DVKTRNAGIELGL 190 (265)
Q Consensus 123 ~~~g~lllll~~llWGss~i~~K~~l~-~isP~~l~~lRfllAallLl~~~~~~--r~---------~~r~~~~~~llGv 190 (265)
-..|++.-.++.+.=|+.++-.|..-+ ..-.++++ ..+-+-+++|+.... -+ +...+....+.|+
T Consensus 5 ii~Gii~h~iGg~~~~sfy~P~kkvk~WsWEs~Wlv---~gi~swli~P~~~a~l~ip~~~~i~~~~~~~~l~~~~l~G~ 81 (344)
T PF06379_consen 5 IILGIIFHAIGGFASGSFYVPFKKVKGWSWESYWLV---QGIFSWLIVPWLWALLAIPDFFSIYSATPASTLFWTFLFGV 81 (344)
T ss_pred HHHHHHHHHHHHHHhhhhccchhhcCCccHHHHHHH---HHHHHHHHHHHHHHHHhCCcHHHHHHhCChhHHHHHHHHHH
Confidence 367999999999999999999888532 33445544 333344555554321 11 2234556667777
Q ss_pred HHHHHHHHHHHHHhhcchhHH-HHHHHhHHHHHHHHHHH--------hcCcCcHHHHHHHHHHHHHhhHhhcCC
Q 024642 191 WVSLGYFVEALGLLTSDAGRA-SFISLFTVIVVPLFDGM--------LGAIIPAHTWFGVLISALGVGMLECSG 255 (265)
Q Consensus 191 ll~~~~~l~~~gL~~tsa~~A-avL~~l~Pvfv~lla~l--------lker~s~~~~iGllLa~iGv~LL~~~G 255 (265)
+=.++-..+-.+++|...+.. ++...+.-++=.++--+ +.++-....++|++++++|+.++..-|
T Consensus 82 lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG 155 (344)
T PF06379_consen 82 LWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAG 155 (344)
T ss_pred HHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHHH
Confidence 654444455567777655554 23333333332222222 233445789999999999999876533
No 80
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=74.88 E-value=12 Score=34.46 Aligned_cols=57 Identities=18% Similarity=0.259 Sum_probs=39.1
Q ss_pred hhhhhHHHHHHHHHHHHHhhhHHHHHHHhhcc--------CHHHHHH----HHHHHHHHHHHHHHhhhc
Q 024642 120 ASKKIRSIFLLNVITIVYASDIPILKAAEEIM--------HPASFCA----VRFVMSAIPFLPFVFWAR 176 (265)
Q Consensus 120 m~~~~~g~lllll~~llWGss~i~~K~~l~~i--------sP~~l~~----lRfllAallLl~~~~~~r 176 (265)
.++++.|..+.+++.++.|++++-.++..++- +++...+ .=|+.+.+.++.+...+|
T Consensus 178 ~~~RivG~~LAv~aGvlyGs~fvPv~Yi~~~~~~y~~as~~~ldYvFs~f~GIfltSt~~F~~Y~~~~r 246 (254)
T PF07857_consen 178 RKKRIVGIILAVFAGVLYGSNFVPVIYIQDHPDIYPGASQNGLDYVFSHFSGIFLTSTVYFVIYCIIKR 246 (254)
T ss_pred ccchhHhHHHHHHHHHHHhcccchHHHHHhCccccCCCCCcchheeHHHHhhHHHHHHHHHHHHHHhhc
Confidence 34578899999999999999999999987654 3333333 234455555555555544
No 81
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=73.47 E-value=14 Score=33.97 Aligned_cols=126 Identities=11% Similarity=-0.047 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 024642 126 SIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLWVSLGYFVEALGLLT 205 (265)
Q Consensus 126 g~lllll~~llWGss~i~~K~~l~~isP~~l~~lRfllAallLl~~~~~~r~~~r~~~~~~llGvll~~~~~l~~~gL~~ 205 (265)
|+++.+++++++|++++-.|.. +.-|++.+-++-...-.+.-+++...+. ..+-..++.+-|.+-..+..+-.-.++.
T Consensus 1 G~~a~~va~~~fGs~~vPvK~~-~~gDg~~fQw~~~~~i~~~g~~v~~~~~-~p~f~p~amlgG~lW~~gN~~~vpii~~ 78 (254)
T PF07857_consen 1 GYIACIVAVLFFGSNFVPVKKF-DTGDGFFFQWVMCSGIFLVGLVVNLILG-FPPFYPWAMLGGALWATGNILVVPIIKT 78 (254)
T ss_pred CchhHHHHHHHhcccceeeEec-cCCCcHHHHHHHHHHHHHHHHHHHHhcC-CCcceeHHHhhhhhhhcCceeehhHhhh
Confidence 4678899999999999999974 4567766555433222221122222222 1122234444455545555555566776
Q ss_pred cchhHHHHHHHhHHHHHHHHH-HH--h---cCcC--cHHHHHHHHHHHHHhhHhhc
Q 024642 206 SDAGRASFISLFTVIVVPLFD-GM--L---GAII--PAHTWFGVLISALGVGMLEC 253 (265)
Q Consensus 206 tsa~~AavL~~l~Pvfv~lla-~l--l---ker~--s~~~~iGllLa~iGv~LL~~ 253 (265)
..-+.+-++-+..-+++--.. .+ | ++.+ +....+|++++++|..+...
T Consensus 79 iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~f 134 (254)
T PF07857_consen 79 IGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSF 134 (254)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheee
Confidence 666677666655443333222 22 3 2322 36788999999999887654
No 82
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=71.82 E-value=64 Score=32.04 Aligned_cols=25 Identities=16% Similarity=0.293 Sum_probs=16.9
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHhh
Q 024642 150 IMHPASFCAVRFVMSAIPFLPFVFW 174 (265)
Q Consensus 150 ~isP~~l~~lRfllAallLl~~~~~ 174 (265)
.++|++-...=..++..-++++.+.
T Consensus 322 ~iHpiQY~LVGlAl~lFYlLLLSlS 346 (430)
T PF06123_consen 322 RIHPIQYLLVGLALVLFYLLLLSLS 346 (430)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999988877666665555555443
No 83
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=68.85 E-value=7.9 Score=32.96 Aligned_cols=48 Identities=10% Similarity=0.170 Sum_probs=33.3
Q ss_pred HHhhcchhHHHHHHHhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhh
Q 024642 202 GLLTSDAGRASFISLFTVIVVPLFDGMLGAIIPAHTWFGVLISALGVG 249 (265)
Q Consensus 202 gL~~tsa~~AavL~~l~Pvfv~lla~llker~s~~~~iGllLa~iGv~ 249 (265)
|+.--+.-.++++.++.|++..+++.++-+++...+.+.++.++.|..
T Consensus 68 Gi~EkslL~sA~LvYi~PL~~l~v~~~La~~L~~~e~~~~~~~~lg~~ 115 (150)
T COG3086 68 GIEEKSLLKSALLVYIFPLVGLFLGAILAQYLFFSELIVIFGAFLGLA 115 (150)
T ss_pred ccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 444556667889999999999999987766666555555555554443
No 84
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=68.11 E-value=7.8 Score=31.67 Aligned_cols=43 Identities=16% Similarity=0.346 Sum_probs=26.6
Q ss_pred chhHHHHHHHhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhh
Q 024642 207 DAGRASFISLFTVIVVPLFDGMLGAIIPAHTWFGVLISALGVG 249 (265)
Q Consensus 207 sa~~AavL~~l~Pvfv~lla~llker~s~~~~iGllLa~iGv~ 249 (265)
+.-.++++.+..|++..+++.++...+....+.+++.+++|++
T Consensus 66 ~~~~aa~l~Y~lPll~li~g~~l~~~~~~~e~~~~l~~l~~l~ 108 (135)
T PF04246_consen 66 SLLKAAFLVYLLPLLALIAGAVLGSYLGGSELWAILGGLLGLA 108 (135)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4446777778888888888776555444445555555554443
No 85
>PRK11715 inner membrane protein; Provisional
Probab=67.22 E-value=98 Score=30.83 Aligned_cols=48 Identities=13% Similarity=0.191 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHhhhc
Q 024642 126 SIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWAR 176 (265)
Q Consensus 126 g~lllll~~llWGss~i~~K~~l~~isP~~l~~lRfllAallLl~~~~~~r 176 (265)
|+++..+..+..-..-+..|. .++|++-...=..++..-++++.+...
T Consensus 307 giLFI~LTF~~fFlfE~~~~~---~iHpiQYlLVGlAl~lFYLLLLSlSEH 354 (436)
T PRK11715 307 AILFIALTFAAFFLFELLKKL---RIHPVQYLLVGLALVLFYLLLLSLSEH 354 (436)
T ss_pred HHHHHHHHHHHHHHHHHhcCc---eecHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444444443333333333333 889998887777666665555555433
No 86
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=66.66 E-value=62 Score=30.93 Aligned_cols=103 Identities=12% Similarity=0.139 Sum_probs=66.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhhhc---CChhhHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHhHHHHHHHHHHH
Q 024642 152 HPASFCAVRFVMSAIPFLPFVFWAR---DDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGM 228 (265)
Q Consensus 152 sP~~l~~lRfllAallLl~~~~~~r---~~~r~~~~~~llGvll~~~~~l~~~gL~~tsa~~AavL~~l~Pvfv~lla~l 228 (265)
+|..+.+..-+++.+.-...+..++ ..++-|......++...+.-.+.+.+++|.+=-.-.+-=++=-+=|++...+
T Consensus 50 ~~~fL~~~q~l~~~~~s~~~l~~~k~~~~~~apl~~y~~is~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVmlmg~L 129 (327)
T KOG1581|consen 50 HSLFLVFCQRLVALLVSYAMLKWWKKELSGVAPLYKYSLISFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVMLMGTL 129 (327)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhcccccCCCCCchhHHhHHHHHhhcchHHHHHHHHhccchHHHHHHHhhhhHHHHHHHH
Confidence 4666666666666655544443332 1223355666677776666678889999976444333334444445566665
Q ss_pred -hcCcCcHHHHHHHHHHHHHhhHhhcC
Q 024642 229 -LGAIIPAHTWFGVLISALGVGMLECS 254 (265)
Q Consensus 229 -lker~s~~~~iGllLa~iGv~LL~~~ 254 (265)
.|+|.+..+-+...+.-+|+.+....
T Consensus 130 vy~~ky~~~eYl~~~LIs~GvsiF~l~ 156 (327)
T KOG1581|consen 130 VYGRKYSSFEYLVAFLISLGVSIFSLF 156 (327)
T ss_pred HhcCccCcHHHHHHHHHHhheeeEEEe
Confidence 68999999999999989999876653
No 87
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=63.79 E-value=1.1 Score=41.56 Aligned_cols=127 Identities=17% Similarity=0.193 Sum_probs=69.1
Q ss_pred hHHHHHHHHHHHHHhhhHHHHHH-HhhccCHHHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHHHHHHHHHHH
Q 024642 124 IRSIFLLNVITIVYASDIPILKA-AEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLWVSLGYFVEALG 202 (265)
Q Consensus 124 ~~g~lllll~~llWGss~i~~K~-~l~~isP~~l~~lRfllAallLl~~~~~~r~~~r~~~~~~llGvll~~~~~l~~~g 202 (265)
.+|...++...+.+-...+..+. ..+..+.+.--+.-+.++++++-..-. .++..|......+.|++-..+..+++++
T Consensus 151 kkgi~~L~iSt~GYv~yvvl~~~f~v~g~saiLPqAiGMv~~ali~~~~~~-~~~~~K~t~~nii~G~~Wa~GNl~ml~a 229 (288)
T COG4975 151 KKGIVILLISTLGYVGYVVLFQLFDVDGLSAILPQAIGMVIGALILGFFKM-EKRFNKYTWLNIIPGLIWAIGNLFMLLA 229 (288)
T ss_pred hhheeeeeeeccceeeeEeeeccccccchhhhhHHHHHHHHHHHHHhhccc-ccchHHHHHHHHhhHHHHHhhHHHHHHh
Confidence 45666665555544444343333 235666666666777777765542211 0122233344456777766666666666
Q ss_pred HhhcchhHHHHHHHhHHHHHHHHHHH-hcCcCcHHHH----HHHHHHHHHhhHh
Q 024642 203 LLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTW----FGVLISALGVGML 251 (265)
Q Consensus 203 L~~tsa~~AavL~~l~Pvfv~lla~l-lker~s~~~~----iGllLa~iGv~LL 251 (265)
-+....+.+=-+..+..++..+-+-+ +|||-+++++ +|+++.++|..++
T Consensus 230 ~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~iGiilivvgai~l 283 (288)
T COG4975 230 AQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVIIGIILIVVGAILL 283 (288)
T ss_pred hhhhceeeeeeHhhheeeeeecceEEEEeccCchhhhhhhhhhHHHHHHHhhhh
Confidence 66544444433444444444444443 6888776654 5666666666554
No 88
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=63.32 E-value=1e+02 Score=29.38 Aligned_cols=103 Identities=12% Similarity=0.040 Sum_probs=64.9
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHhhhc-----------CChhhHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHhHH
Q 024642 151 MHPASFCAVRFVMSAIPFLPFVFWAR-----------DDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTV 219 (265)
Q Consensus 151 isP~~l~~lRfllAallLl~~~~~~r-----------~~~r~~~~~~llGvll~~~~~l~~~gL~~tsa~~AavL~~l~P 219 (265)
-+...++++-+.++.+.++..+...+ .+.+....+++.+...+++..+...=++.-.+..++.+...--
T Consensus 218 ~ss~EmvfySy~iG~vflf~~mvlTge~f~a~~fcaehp~~tyGy~~~~s~~gylG~~~VLalI~~fGA~~aatvTTaRK 297 (367)
T KOG1582|consen 218 ASSSEMVFYSYGIGFVFLFAPMVLTGELFSAWTFCAEHPVRTYGYAFLFSLAGYLGIVFVLALIKLFGALIAATVTTARK 297 (367)
T ss_pred CCcceEEEeeecccHHHHHHHHHhcccchhhhHHHHhCcHhHHHHHHHHHHHhHhhHHHHHHHHHHhchhHHHHHHHhHh
Confidence 34567777778888877776655433 1233333333333332222222212233456667777777777
Q ss_pred HHHHHHHHH-hcCcCcHHHHHHHHHHHHHhhHhhc
Q 024642 220 IVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLEC 253 (265)
Q Consensus 220 vfv~lla~l-lker~s~~~~iGllLa~iGv~LL~~ 253 (265)
..+.+++++ |.++++-....+.++.+.|+.+=..
T Consensus 298 avTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~y 332 (367)
T KOG1582|consen 298 AVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMY 332 (367)
T ss_pred HHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcc
Confidence 788899986 7889999888899999999988544
No 89
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=62.34 E-value=11 Score=31.86 Aligned_cols=27 Identities=15% Similarity=0.129 Sum_probs=16.9
Q ss_pred hhcchhHHHHHHHhHHHHHHHHHHHhc
Q 024642 204 LTSDAGRASFISLFTVIVVPLFDGMLG 230 (265)
Q Consensus 204 ~~tsa~~AavL~~l~Pvfv~lla~llk 230 (265)
...+.-.++++.|+.|++.++++.++.
T Consensus 70 ~e~~llkaa~lvYllPLl~li~ga~l~ 96 (154)
T PRK10862 70 AEGSLLRSALLVYMTPLVGLFLGAALF 96 (154)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445667777777777777665443
No 90
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=60.21 E-value=1.2e+02 Score=26.56 Aligned_cols=18 Identities=0% Similarity=0.095 Sum_probs=9.3
Q ss_pred HHHHHHHHHhhhHHHHHH
Q 024642 129 LLNVITIVYASDIPILKA 146 (265)
Q Consensus 129 llll~~llWGss~i~~K~ 146 (265)
+..+.+++-|....+.+-
T Consensus 89 ~~~if~~~~gi~~~f~~~ 106 (206)
T PF06570_consen 89 FFGIFSLLFGIMGFFSPK 106 (206)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 333444556666655553
No 91
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=59.59 E-value=74 Score=30.37 Aligned_cols=127 Identities=10% Similarity=0.002 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHhh--ccCHHHHHHHHHHHHHHHHHHHHhhhcC---------Chh---hHHHHHHHHH
Q 024642 125 RSIFLLNVITIVYASDIPILKAAEE--IMHPASFCAVRFVMSAIPFLPFVFWARD---------DVK---TRNAGIELGL 190 (265)
Q Consensus 125 ~g~lllll~~llWGss~i~~K~~l~--~isP~~l~~lRfllAallLl~~~~~~r~---------~~r---~~~~~~llGv 190 (265)
.|+..++...+.=....+..|...+ +..-+.+.++--+++...+..+....+. ++. .+....+-|+
T Consensus 157 ~gY~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~~~~~~~~~lScv 236 (314)
T KOG1444|consen 157 RGYSWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSDSSVLVVMLLSCV 236 (314)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccchhHHHHHHHHHH
Confidence 4566666666666666777777654 5666777777777776666655533221 111 1223333344
Q ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHhHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHHhhHh
Q 024642 191 WVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGML 251 (265)
Q Consensus 191 ll~~~~~l~~~gL~~tsa~~AavL~~l~Pvfv~lla~l-lker~s~~~~iGllLa~iGv~LL 251 (265)
+...-.++.++..+.+++..-++.....-..+.+...+ .+++.++..++|+.+++.|-++-
T Consensus 237 ~gf~isy~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y 298 (314)
T KOG1444|consen 237 MGFGISYTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLY 298 (314)
T ss_pred HHHHHHHHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHH
Confidence 43222233346666666666666653334334443334 47788999999999998887653
No 92
>PF12811 BaxI_1: Bax inhibitor 1 like ; InterPro: IPR010539 Bax inhibitor-1 (BI1) family contains six known genes in human. Some members of BI1 family have been proved to play important roles in cell death [, ].
Probab=47.65 E-value=2.4e+02 Score=26.37 Aligned_cols=16 Identities=25% Similarity=0.173 Sum_probs=7.8
Q ss_pred HHHHHhHHHHHHHHHH
Q 024642 212 SFISLFTVIVVPLFDG 227 (265)
Q Consensus 212 avL~~l~Pvfv~lla~ 227 (265)
+++..+..++++++.+
T Consensus 150 Avl~T~~vf~~ml~lY 165 (274)
T PF12811_consen 150 AVLGTFGVFAVMLALY 165 (274)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444555555544
No 93
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=45.40 E-value=1.4e+02 Score=27.68 Aligned_cols=109 Identities=14% Similarity=0.078 Sum_probs=72.0
Q ss_pred HHHHHHh--hccCHHHHHHHHHHHHHHHHHHHHhhhc-CCh---------hhHHHHHHHHHHHHHHHHHHHHHHhhcchh
Q 024642 142 PILKAAE--EIMHPASFCAVRFVMSAIPFLPFVFWAR-DDV---------KTRNAGIELGLWVSLGYFVEALGLLTSDAG 209 (265)
Q Consensus 142 i~~K~~l--~~isP~~l~~lRfllAallLl~~~~~~r-~~~---------r~~~~~~llGvll~~~~~l~~~gL~~tsa~ 209 (265)
..+|... .+..-+...++--+++..+|+.+.+... .+. ....+.++.|++...--+.-.+.++-+++.
T Consensus 172 L~mrkri~ltNf~d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISgl~svgiSy~saWcvrVtSST 251 (309)
T COG5070 172 LIMRKRIKLTNFKDFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISGLCSVGISYCSAWCVRVTSST 251 (309)
T ss_pred HHHHHhhcccccchhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHHHHHhhhhhccceeEeehhhh
Confidence 3445443 3667788888999998888887766432 111 123355566665422222234566667777
Q ss_pred HHHHHHHhHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHHhhH
Q 024642 210 RASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGM 250 (265)
Q Consensus 210 ~AavL~~l~Pvfv~lla~l-lker~s~~~~iGllLa~iGv~L 250 (265)
.-+.+.+++-.-..+.+.+ +++..+...+.++++++..-++
T Consensus 252 tySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~i 293 (309)
T COG5070 252 TYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAI 293 (309)
T ss_pred HHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHH
Confidence 7788888887777777776 7999999999999998654433
No 94
>KOG3817 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.31 E-value=1.5e+02 Score=29.19 Aligned_cols=83 Identities=10% Similarity=0.142 Sum_probs=48.3
Q ss_pred HHhhhHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHH-----hhhcCChhhHHHHHHHHHHHHHHHHHHHHHHhhcchhH
Q 024642 136 VYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFV-----FWARDDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGR 210 (265)
Q Consensus 136 lWGss~i~~K~~l~~isP~~l~~lRfllAallLl~~~-----~~~r~~~r~~~~~~llGvll~~~~~l~~~gL~~tsa~~ 210 (265)
.|..+.-++|.+.+++--++.--.-++++-++...++ .+.++...+.-.-++.=.+..++..+.+.|.+..+++.
T Consensus 200 gWs~slY~i~ql~~nLq~Iwieyr~yvLgYvlivgliSfaVCYK~GPp~d~RS~~ilmWtLqli~lvl~Yfsvq~p~~a~ 279 (452)
T KOG3817|consen 200 GWSISLYVIKQLADNLQLIWIEYRDYVLGYVLIVGLISFAVCYKIGPPKDPRSQTILMWTLQLIGLVLAYFSVQHPSAAI 279 (452)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCcchhhHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 4888999999999998888887777777765544333 22232111000001111111222344568889999999
Q ss_pred HHHHHHhH
Q 024642 211 ASFISLFT 218 (265)
Q Consensus 211 AavL~~l~ 218 (265)
|++|+.+.
T Consensus 280 A~iI~~lc 287 (452)
T KOG3817|consen 280 AAIIMVLC 287 (452)
T ss_pred HHHHHHHH
Confidence 88776543
No 95
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=39.87 E-value=41 Score=31.68 Aligned_cols=128 Identities=14% Similarity=0.077 Sum_probs=81.0
Q ss_pred hHHHHHHHHHHHHHhhhHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHhhhcCCh----hhHH--HHHHHHHHHHHHHH
Q 024642 124 IRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDV----KTRN--AGIELGLWVSLGYF 197 (265)
Q Consensus 124 ~~g~lllll~~llWGss~i~~K~~l~~isP~~l~~lRfllAallLl~~~~~~r~~~----r~~~--~~~llGvll~~~~~ 197 (265)
.+|-+++++++-+++.+.+.-.......|-..+...--+.++++-.+=....+.+. .++. ..+...+.++..|.
T Consensus 165 ~~GD~lvi~GATlYaVSNv~EEflvkn~d~~elm~~lgLfGaIIsaIQ~i~~~~~~~tl~w~~~i~~yl~f~L~MFllYs 244 (336)
T KOG2766|consen 165 VKGDFLVIAGATLYAVSNVSEEFLVKNADRVELMGFLGLFGAIISAIQFIFERHHVSTLHWDSAIFLYLRFALTMFLLYS 244 (336)
T ss_pred ccCcEEEEecceeeeeccccHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhhccceeeEeehHHHHHHHHHHHHHHHHHH
Confidence 67888888899999999999999999999998888888888876665433333221 1222 22222222344444
Q ss_pred HHHHHHhhcchhHH--HHHHHhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhHhhcC
Q 024642 198 VEALGLLTSDAGRA--SFISLFTVIVVPLFDGMLGAIIPAHTWFGVLISALGVGMLECS 254 (265)
Q Consensus 198 l~~~gL~~tsa~~A--avL~~l~Pvfv~lla~llker~s~~~~iGllLa~iGv~LL~~~ 254 (265)
+.-.=++.+++..- +++. .-++..++ ..|+-++.+.-.++......|.++-.+.
T Consensus 245 l~pil~k~~~aT~~nlslLT--sDmwsl~i-~~FgYhv~wLY~laF~~i~~GliiYs~r 300 (336)
T KOG2766|consen 245 LAPILIKTNSATMFNLSLLT--SDMWSLLI-RTFGYHVDWLYFLAFATIATGLIIYSTR 300 (336)
T ss_pred hhHHheecCCceEEEhhHhH--HHHHHHHH-HHHhcchhhhhHHHHHHHHHhhEEeecc
Confidence 44455554444322 2332 23333333 4566678999999999999998776553
No 96
>PF09586 YfhO: Bacterial membrane protein YfhO; InterPro: IPR018580 The yfhO gene is transcribed in Difco sporulation medium and the transcription is affected by the YvrGHb two-component system []. Some members of this family have been annotated as putative ABC transporter permease proteins.
Probab=37.52 E-value=3.8e+02 Score=28.16 Aligned_cols=88 Identities=6% Similarity=-0.035 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHhHHHHHHHHHHHhcCcC
Q 024642 154 ASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGMLGAII 233 (265)
Q Consensus 154 ~~l~~lRfllAallLl~~~~~~r~~~r~~~~~~llGvll~~~~~l~~~gL~~tsa~~AavL~~l~Pvfv~lla~llker~ 233 (265)
..+..+|..++++.+..++.+++.+++. ...++.|++.+..-..........= .--....|++...+..++++|-
T Consensus 93 ~~~~~lk~~lag~~~~~~l~~~~~~~~~-~~~~i~s~~Yafsg~~~~~~~~~~f----ld~~i~lPL~llgie~~~~~~k 167 (843)
T PF09586_consen 93 LLLIILKIGLAGLFFYLYLRKFKKSRSD-WAALIGSLLYAFSGYVIYYSFNIMF----LDAMILLPLLLLGIERLLKEKK 167 (843)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCccc-HHHHHHHHHHHHHHHHHHHhhhHHH----HHHHHHHHHHHHHHHHHHhcCC
Q ss_pred cHHHHHHHHHHHH
Q 024642 234 PAHTWFGVLISAL 246 (265)
Q Consensus 234 s~~~~iGllLa~i 246 (265)
...-++.+.++++
T Consensus 168 ~~~~~~~~~l~~i 180 (843)
T PF09586_consen 168 WWLFIISLALALI 180 (843)
T ss_pred cchhHHHHHHHHH
No 97
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=36.07 E-value=1.7e+02 Score=25.11 Aligned_cols=23 Identities=26% Similarity=0.117 Sum_probs=11.3
Q ss_pred CceeecccccccCCCccccccCC
Q 024642 59 KTLHFTNLTHIIKNKCTWVIKAK 81 (265)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~ 81 (265)
+.+.|...+..++++.+....++
T Consensus 5 ~~~pfeP~~~~~k~~k~~~~~~~ 27 (153)
T PF11947_consen 5 KRLPFEPSKKRKKNKKKQRKPPQ 27 (153)
T ss_pred CCCCCCCccchhhhhcccccccc
Confidence 44445444444455555554443
No 98
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=35.36 E-value=1.9e+02 Score=27.59 Aligned_cols=34 Identities=15% Similarity=0.211 Sum_probs=26.1
Q ss_pred HHHHHHH-hcCcCcHHHHHHHHHHHHHhhHhhcCC
Q 024642 222 VPLFDGM-LGAIIPAHTWFGVLISALGVGMLECSG 255 (265)
Q Consensus 222 v~lla~l-lker~s~~~~iGllLa~iGv~LL~~~G 255 (265)
|++.+.+ =++|-+....+++.+..+|+++....+
T Consensus 146 VmiggifIqGkRY~v~d~~aA~lm~lGli~FTLAD 180 (367)
T KOG1582|consen 146 VMIGGIFIQGKRYGVHDYIAAMLMSLGLIWFTLAD 180 (367)
T ss_pred hhheeeeeccccccHHHHHHHHHHHHHHHhhhhcc
Confidence 3334444 388999999999999999999877643
No 99
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=34.84 E-value=4.2e+02 Score=25.47 Aligned_cols=126 Identities=16% Similarity=0.153 Sum_probs=78.4
Q ss_pred hHHHHHHHHHHHHHhhhHHHHHHHhh--ccCHHHHHHHHHHHHHHHHHHHHhh----h-cC--------ChhhHH-----
Q 024642 124 IRSIFLLNVITIVYASDIPILKAAEE--IMHPASFCAVRFVMSAIPFLPFVFW----A-RD--------DVKTRN----- 183 (265)
Q Consensus 124 ~~g~lllll~~llWGss~i~~K~~l~--~isP~~l~~lRfllAallLl~~~~~----~-r~--------~~r~~~----- 183 (265)
+.|.++.+++-++-+.-++.-...+. +++|...+.+.-+.+.+++..+... . .. .+.||.
T Consensus 175 itGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~~~g~~eD~~~~~~~ 254 (372)
T KOG3912|consen 175 ITGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCNPRGVLEDWGDAFAA 254 (372)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcCCCCcchhhHHHHHHH
Confidence 56777888888888888877754443 8999999999998886655444321 1 10 122221
Q ss_pred -------HHHHHHHHHHHHHHHHHHHHh---hcchhHHHHHHHhHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHHhhH
Q 024642 184 -------AGIELGLWVSLGYFVEALGLL---TSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGM 250 (265)
Q Consensus 184 -------~~~llGvll~~~~~l~~~gL~---~tsa~~AavL~~l~Pvfv~lla~l-lker~s~~~~iGllLa~iGv~L 250 (265)
...+.|....++|. -+.|+. +.++++=.++=++-.+++=+++.. .-|.....++.|.++-+.|+++
T Consensus 255 ~~e~p~l~val~~~~vSiAff-NfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~llqilGFliLi~Gi~l 331 (372)
T KOG3912|consen 255 LQESPSLAVALIGFTVSIAFF-NFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLLQILGFLILIMGIIL 331 (372)
T ss_pred hcCCchhHHHHhhhhhheeee-eehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22333443333321 113333 346666566666655555555544 4688999999999999999976
No 100
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=32.93 E-value=1.5e+02 Score=27.56 Aligned_cols=65 Identities=8% Similarity=0.071 Sum_probs=47.6
Q ss_pred HHHHhhcchhHHHHHHHhHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHHhhHhhcCCC--------CCCccccc
Q 024642 200 ALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLECSGS--------PPSVSIFK 264 (265)
Q Consensus 200 ~~gL~~tsa~~AavL~~l~Pvfv~lla~l-lker~s~~~~iGllLa~iGv~LL~~~G~--------~~~lGDll 264 (265)
..+++|.+...-+++-+++-+.++....+ +|.|++-....+.++.++.-+.-.++.. .+|.|.++
T Consensus 86 SKsLqyL~vpiYTiFKNltII~iAygEvl~Fgg~vtsl~l~SFilMvlSS~va~w~D~q~~~~~~~~lN~GY~W 159 (309)
T COG5070 86 SKSLQYLAVPIYTIFKNLTIILIAYGEVLFFGGRVTSLELLSFILMVLSSVVATWGDQQASAFKAQILNPGYLW 159 (309)
T ss_pred ccceeeeeeeHHHHhccceeehhHhhHHHHhcCccchhhHHHHHHHHHHHHHhccchhhHHHHHhcccCCceEE
Confidence 47889999888888888888888877765 7999998888888777665544333221 45777653
No 101
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=28.07 E-value=1.2e+02 Score=24.58 Aligned_cols=51 Identities=18% Similarity=0.159 Sum_probs=32.3
Q ss_pred HHHhhcchhHHHHHHHhH--HHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhHh
Q 024642 201 LGLLTSDAGRASFISLFT--VIVVPLFDGMLGAIIPAHTWFGVLISALGVGML 251 (265)
Q Consensus 201 ~gL~~tsa~~AavL~~l~--Pvfv~lla~llker~s~~~~iGllLa~iGv~LL 251 (265)
+|.+.-+.++--+++=.. .+|+++-..++||++++..+.|.+..+.++.++
T Consensus 54 iG~~~~s~~QLKi~QEvitL~vF~~Fsv~~l~E~l~~n~l~af~~i~~av~fi 106 (108)
T PF04342_consen 54 IGYQTFSLAQLKIIQEVITLVVFAPFSVFYLGEPLKWNYLWAFLCILGAVYFI 106 (108)
T ss_pred hhccccCHHHHHHHHHHHhhheeHHHHHHHhCCCccHHHHHHHHHHHHhhhee
Confidence 455555666666666333 223333223479999999999988877776543
No 102
>PF07168 Ureide_permease: Ureide permease; InterPro: IPR009834 This entry represents ureide permease, which transports a wide spectrum of oxo derivatives of heterocyclic nitrogen compounds, including allantoin, uric acid and xanthine, but not adenine. Transport is dependent on glucose and a proton gradient [].
Probab=26.81 E-value=11 Score=35.98 Aligned_cols=105 Identities=10% Similarity=0.034 Sum_probs=54.4
Q ss_pred HHHHHHHhhhHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHhhh----c------C---------ChhhHHHHHHHHHH
Q 024642 131 NVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWA----R------D---------DVKTRNAGIELGLW 191 (265)
Q Consensus 131 ll~~llWGss~i~~K~~l~~isP~~l~~lRfllAallLl~~~~~~----r------~---------~~r~~~~~~llGvl 191 (265)
+++.++||+-....|++-..---....-+=+.++-++..++.... + + ++..+...+.-|+.
T Consensus 2 ~itmlcwGSW~nt~kL~~r~gR~~qh~Y~DYsig~lL~All~A~TlGs~G~~~~~g~~Fl~qL~Q~n~~sv~~A~aGGvv 81 (336)
T PF07168_consen 2 VITMLCWGSWPNTQKLAERRGRLPQHFYWDYSIGNLLAALLIAFTLGSIGESTPEGPNFLTQLSQANWPSVLFAMAGGVV 81 (336)
T ss_pred eeehhhhcChHHHHHHHHhcCCccceehhHHHHHHHHHHHHHHHhccccCCCCCCCccHHHHHhcCChHHHHHHHHhhHh
Confidence 467889999999999986533333334455555444443333211 1 1 11223444555666
Q ss_pred HHHHHHHHHHHHhhcchhHHHHHH-HhHHHHHHHHHHHhcCcCcH
Q 024642 192 VSLGYFVEALGLLTSDAGRASFIS-LFTVIVVPLFDGMLGAIIPA 235 (265)
Q Consensus 192 l~~~~~l~~~gL~~tsa~~AavL~-~l~Pvfv~lla~llker~s~ 235 (265)
+.++..+...++.+..-+.+-.+. ++..++=.++.+++..|.++
T Consensus 82 fnlgNillq~aia~aGmSVafpvg~glalVlGv~~NYfld~~~n~ 126 (336)
T PF07168_consen 82 FNLGNILLQAAIAFAGMSVAFPVGIGLALVLGVTLNYFLDPKINR 126 (336)
T ss_pred hhhHHHHHHHHHHHhcceeeeeeecceEEEEeeeeeeeccCCCCC
Confidence 777777766777765555443222 22222222333444455553
No 103
>COG3610 Uncharacterized conserved protein [Function unknown]
Probab=23.58 E-value=4.6e+02 Score=22.33 Aligned_cols=40 Identities=10% Similarity=-0.036 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCChhhHHHHHHHHHHHHH
Q 024642 155 SFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLWVSL 194 (265)
Q Consensus 155 ~l~~lRfllAallLl~~~~~~r~~~r~~~~~~llGvll~~ 194 (265)
....++++.+++.-+.+....+.++|++.+..+.|.+...
T Consensus 4 ~~~~~~~~~a~i~~v~Faivfnvp~~~l~~~~~~g~~g~~ 43 (156)
T COG3610 4 LMLLLDMLFAFIATVGFAIVFNVPPRALPICGFLGALGWV 43 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 4456778888877777777667778888877666665433
No 104
>KOG2322 consensus N-methyl-D-aspartate receptor glutamate-binding subunit [Signal transduction mechanisms]
Probab=22.97 E-value=6e+02 Score=23.38 Aligned_cols=7 Identities=43% Similarity=0.657 Sum_probs=3.3
Q ss_pred HHHHHHH
Q 024642 185 GIELGLW 191 (265)
Q Consensus 185 ~~llGvl 191 (265)
..++|++
T Consensus 114 ~ilL~iF 120 (237)
T KOG2322|consen 114 LILLGIF 120 (237)
T ss_pred HhHHHHH
Confidence 4445544
No 105
>TIGR01129 secD protein-export membrane protein SecD. SecD from Mycobacterium tuberculosis has a long Pro-rich insert.
Probab=21.20 E-value=6.6e+02 Score=24.50 Aligned_cols=15 Identities=20% Similarity=0.441 Sum_probs=7.0
Q ss_pred hcCcCcHHHHHHHHH
Q 024642 229 LGAIIPAHTWFGVLI 243 (265)
Q Consensus 229 lker~s~~~~iGllL 243 (265)
++..++...+.|+++
T Consensus 294 ~g~~l~l~siaglil 308 (397)
T TIGR01129 294 FGATLTLPGIAGLIL 308 (397)
T ss_pred HCCCccHHHHHHHHH
Confidence 454555444444443
No 106
>TIGR00353 nrfE c-type cytochrome biogenesis protein CcmF. The product of this gene is required for the biogenesis of C-type cytochromes. This gene is thought to have eleven transmembrane helices. Disruption of this gene in Paracoccus denitrificans, encoding a putative transporter, results in formation of an unstable apocytochrome c and deficiency in siderophore production.
Probab=20.40 E-value=9.6e+02 Score=24.80 Aligned_cols=23 Identities=4% Similarity=0.247 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHhhhHHHHHHHhh
Q 024642 127 IFLLNVITIVYASDIPILKAAEE 149 (265)
Q Consensus 127 ~lllll~~llWGss~i~~K~~l~ 149 (265)
.+......++||+.+++.-..+.
T Consensus 305 ll~~~~~~Vl~GT~~P~~~~~~~ 327 (576)
T TIGR00353 305 LLCAALLVVLLGTLYPMVHKQLG 327 (576)
T ss_pred HHHHHHHHHHHHhHHHHHHHHhC
Confidence 34455566899999999877653
No 107
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=20.14 E-value=34 Score=32.50 Aligned_cols=14 Identities=29% Similarity=0.527 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHH
Q 024642 124 IRSIFLLNVITIVY 137 (265)
Q Consensus 124 ~~g~lllll~~llW 137 (265)
..+.++++++.++|
T Consensus 26 ~~~~llll~ail~w 39 (381)
T PF05297_consen 26 LFGLLLLLVAILVW 39 (381)
T ss_dssp --------------
T ss_pred HHHHHHHHHHHHHH
Confidence 45667777777777
Done!