Query 024642
Match_columns 265
No_of_seqs 187 out of 1315
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 11:52:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024642.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024642hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b5d_A Multidrug transporter E 98.2 2.3E-05 7.7E-10 61.6 11.6 64 192-255 40-105 (110)
2 2i68_A Protein EMRE; transmemb 98.0 1.8E-05 6.2E-10 64.8 8.2 63 192-254 40-104 (137)
3 2jp3_A FXYD domain-containing 8.9 2E+02 0.0069 20.3 2.4 18 237-254 22-39 (67)
4 2zxe_G FXYD10, phospholemman-l 7.8 2.3E+02 0.008 20.3 2.4 18 237-254 24-41 (74)
5 3aqp_A Probable secdf protein- 7.4 1.5E+03 0.051 22.3 9.0 14 201-214 319-332 (741)
6 2jo1_A Phospholemman; FXYD1, N 6.9 2.1E+02 0.0072 20.4 1.7 17 237-253 21-37 (72)
7 2yvc_D Neprilysin; protein-pep 6.8 1.1E+02 0.0038 17.4 0.2 8 71-78 18-25 (26)
8 1ew4_A CYAY protein; friedreic 6.6 1.8E+02 0.0062 22.0 1.4 24 59-82 39-67 (106)
9 1zkz_A Growth/differentiation 5.9 1.8E+02 0.006 22.0 0.9 25 17-41 80-110 (110)
10 1jmt_B Splicing factor U2AF 65 5.9 1.8E+02 0.0062 17.1 0.8 14 71-84 3-16 (28)
No 1
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.17 E-value=2.3e-05 Score=61.57 Aligned_cols=64 Identities=17% Similarity=0.230 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHhhcchhHHHHH-HHhHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHHhhHhhcCC
Q 024642 192 VSLGYFVEALGLLTSDAGRASFI-SLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLECSG 255 (265)
Q Consensus 192 l~~~~~l~~~gL~~tsa~~AavL-~~l~Pvfv~lla~l-lker~s~~~~iGllLa~iGv~LL~~~G 255 (265)
....|.++..++++.+.+.+.-+ .++.|+++.+++++ ++|+++..+++|+++.++|++++...+
T Consensus 40 ~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 40 YCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 45667788899999999999766 79999999999986 799999999999999999999886643
No 2
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.00 E-value=1.8e-05 Score=64.84 Aligned_cols=63 Identities=17% Similarity=0.231 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHhhcchhHHHHH-HHhHHHHHHHHHHH-hcCcCcHHHHHHHHHHHHHhhHhhcC
Q 024642 192 VSLGYFVEALGLLTSDAGRASFI-SLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLECS 254 (265)
Q Consensus 192 l~~~~~l~~~gL~~tsa~~AavL-~~l~Pvfv~lla~l-lker~s~~~~iGllLa~iGv~LL~~~ 254 (265)
...+|.++..++++.+++.+..+ .++.|+++.+++++ ++|+++..+++|+++.++|++++...
T Consensus 40 ~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~ 104 (137)
T 2i68_A 40 YCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (137)
T ss_dssp HHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 45667888999999999999877 89999999999986 79999999999999999999998653
No 3
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=8.88 E-value=2e+02 Score=20.30 Aligned_cols=18 Identities=22% Similarity=0.401 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHhhHhhcC
Q 024642 237 TWFGVLISALGVGMLECS 254 (265)
Q Consensus 237 ~~iGllLa~iGv~LL~~~ 254 (265)
-+++.++.++|++++..+
T Consensus 22 LifA~vLfi~GI~iilS~ 39 (67)
T 2jp3_A 22 LIFGGLLCIAGIALALSG 39 (67)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHHHHHHHcC
Confidence 456677778888887653
No 4
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=7.83 E-value=2.3e+02 Score=20.34 Aligned_cols=18 Identities=11% Similarity=0.279 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHhhHhhcC
Q 024642 237 TWFGVLISALGVGMLECS 254 (265)
Q Consensus 237 ~~iGllLa~iGv~LL~~~ 254 (265)
-+++.++.++|+++|..+
T Consensus 24 LifA~vLfi~GI~iilS~ 41 (74)
T 2zxe_G 24 LIVAAVLCVIGIIILLAG 41 (74)
T ss_dssp HHHHHHHHHHHHHHHTTT
T ss_pred chhHHHHHHHHHHHHHcC
Confidence 456677778888887654
No 5
>3aqp_A Probable secdf protein-export membrane protein; translocon, cell membrane, MEM protein transport, translocation, transmembrane, transport; 3.30A {Thermus thermophilus} PDB: 2rrn_A
Probab=7.40 E-value=1.5e+03 Score=22.33 Aligned_cols=14 Identities=29% Similarity=0.399 Sum_probs=7.2
Q ss_pred HHHhhcchhHHHHH
Q 024642 201 LGLLTSDAGRASFI 214 (265)
Q Consensus 201 ~gL~~tsa~~AavL 214 (265)
.|...+..+.++++
T Consensus 319 ~g~~l~l~~i~gli 332 (741)
T 3aqp_A 319 LGATLTLPGIAGLV 332 (741)
T ss_dssp HCCBCCHHHHHHHH
T ss_pred HCCCccHHHHHHHH
Confidence 45555555555433
No 6
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=6.88 E-value=2.1e+02 Score=20.45 Aligned_cols=17 Identities=12% Similarity=0.143 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHhhHhhc
Q 024642 237 TWFGVLISALGVGMLEC 253 (265)
Q Consensus 237 ~~iGllLa~iGv~LL~~ 253 (265)
-+++.++.++|+++|..
T Consensus 21 LifA~vLfi~GI~iilS 37 (72)
T 2jo1_A 21 LVIAGILFILGILIVLS 37 (72)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHc
Confidence 45667777888887765
No 7
>2yvc_D Neprilysin; protein-peptide complex, cell adhesion; 3.20A {Mus musculus}
Probab=6.77 E-value=1.1e+02 Score=17.41 Aligned_cols=8 Identities=25% Similarity=0.062 Sum_probs=5.8
Q ss_pred CCCccccc
Q 024642 71 KNKCTWVI 78 (265)
Q Consensus 71 ~~~~~~~~ 78 (265)
|.||||+.
T Consensus 18 kkk~rws~ 25 (26)
T 2yvc_D 18 KKKQRXXX 25 (26)
T ss_pred chhhcccc
Confidence 55699974
No 8
>1ew4_A CYAY protein; friedreich ataxia, frataxin family, iron homeostasis, unknown function; 1.40A {Escherichia coli} SCOP: d.82.2.1 PDB: 2eff_A 2p1x_A 1soy_A
Probab=6.64 E-value=1.8e+02 Score=21.97 Aligned_cols=24 Identities=29% Similarity=0.513 Sum_probs=17.1
Q ss_pred Cceeeccccccc-----CCCccccccCCC
Q 024642 59 KTLHFTNLTHII-----KNKCTWVIKAKG 82 (265)
Q Consensus 59 ~~~~~~~~~~~~-----~~~~~~~~~~~~ 82 (265)
=|+.|.+-.+++ |+||=|-+-|-|
T Consensus 39 Lti~f~~~~~~VINkQ~P~~QIWlaSp~s 67 (106)
T 1ew4_A 39 LTITFENGSKIIINRQEPLHQVWLATKQG 67 (106)
T ss_dssp EEEECTTSCEEEEEEETTTTEEEEECSSC
T ss_pred EEEEECCCCEEEEeCCchhhhheEecCCC
Confidence 466776666544 999999887664
No 9
>1zkz_A Growth/differentiation factor 2; glycoprotein, growth factor, cytokine, hormone-growth factor; 2.33A {Homo sapiens}
Probab=5.93 E-value=1.8e+02 Score=22.00 Aligned_cols=25 Identities=28% Similarity=0.612 Sum_probs=17.7
Q ss_pred ccchhheeecc-Cccee-----EEecccccc
Q 024642 17 SSMAMTYYYAT-KPTWK-----IVTTDCTCS 41 (265)
Q Consensus 17 ~~~~~~~~~~~-~~~~~-----~~~~~~~~~ 41 (265)
+++.|.||-.. +..+| .|..+|.|+
T Consensus 80 ~~ls~ly~d~~~~v~~~~~~~~Mvv~~CgC~ 110 (110)
T 1zkz_A 80 SPISVLYKDDMGVPTLKYHYEGMSVAECGCR 110 (110)
T ss_dssp EEEEEEEECTTCCEEEEEEEEEEEEEEEEEC
T ss_pred ccEEEEEEeCCCCEEEeeEeCCEEEEecccC
Confidence 45677777653 56677 788899985
No 10
>1jmt_B Splicing factor U2AF 65 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens}
Probab=5.90 E-value=1.8e+02 Score=17.10 Aligned_cols=14 Identities=21% Similarity=0.446 Sum_probs=8.6
Q ss_pred CCCccccccCCCcc
Q 024642 71 KNKCTWVIKAKGND 84 (265)
Q Consensus 71 ~~~~~~~~~~~~~~ 84 (265)
+++-.|..+|||=.
T Consensus 3 ~p~~~WDvpP~GyE 16 (28)
T 1jmt_B 3 KVRKYWDVPPPGFE 16 (28)
T ss_dssp ---CCBTCCCTTCT
T ss_pred CcccccCCCCCCcc
Confidence 34457999999853
Done!