Query 024642
Match_columns 265
No_of_seqs 187 out of 1315
Neff 5.8
Searched_HMMs 13730
Date Mon Mar 25 11:52:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024642.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/024642hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2r6gf1 e.70.1.1 (F:13-260) Ma 18.9 2E+02 0.015 22.9 8.1 14 230-243 85-98 (248)
2 d1skza1 g.3.15.1 (A:7-58) Fact 17.6 6.5 0.00048 24.2 -1.4 22 31-52 13-37 (52)
3 d1t2ya_ g.46.1.1 (A:) Metallot 12.8 26 0.0019 18.6 0.4 10 37-46 2-11 (26)
4 d1xaua_ b.1.1.4 (A:) B and T l 10.9 20 0.0014 25.5 -0.6 21 44-64 84-104 (104)
5 d1dfna_ g.9.1.1 (A:) Defensin 6.5 46 0.0033 18.1 -0.2 9 37-45 1-9 (30)
6 d2r6gf1 e.70.1.1 (F:13-260) Ma 6.2 5.7E+02 0.041 19.9 7.1 14 221-234 37-51 (248)
7 d1pv7a_ f.38.1.2 (A:) Lactose 6.0 3.9E+02 0.028 19.8 5.4 22 206-227 40-61 (417)
8 d1ew4a_ d.82.2.1 (A:) CyaY {Es 5.4 1.1E+02 0.0081 21.2 1.4 24 60-83 40-68 (106)
9 d1hh2p4 d.202.1.1 (P:1-126) Tr 5.3 30 0.0022 25.2 -2.1 27 48-74 100-126 (126)
10 g3bzy.1 d.367.1.1 (A:246-262,B 4.8 1E+02 0.0074 21.4 0.8 12 59-70 11-22 (100)
No 1
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=18.86 E-value=2e+02 Score=22.90 Aligned_cols=14 Identities=14% Similarity=0.019 Sum_probs=6.8
Q ss_pred cCcCcHHHHHHHHH
Q 024642 230 GAIIPAHTWFGVLI 243 (265)
Q Consensus 230 ker~s~~~~iGllL 243 (265)
++.+++-+.+..++
T Consensus 85 gh~ltk~~Ai~~l~ 98 (248)
T d2r6gf1 85 TNQLTFERAQEVLL 98 (248)
T ss_dssp TTCBCHHHHHHHHT
T ss_pred CccccHHHHHHHHH
Confidence 34555555554443
No 2
>d1skza1 g.3.15.1 (A:7-58) Factor Xa inhibitor antistasin {Mexican leech (Haementeria officinalis) [TaxId: 6410]}
Probab=17.63 E-value=6.5 Score=24.25 Aligned_cols=22 Identities=41% Similarity=0.815 Sum_probs=15.3
Q ss_pred eeEEeccccccchhh---hhhhhhh
Q 024642 31 WKIVTTDCTCSISSC---CFNFFSN 52 (265)
Q Consensus 31 ~~~~~~~~~~~~~~~---~~~~~~~ 52 (265)
-.|+|..||||--.| |-.+|.|
T Consensus 13 cniitdrctcsgvrcrvhcphgfqr 37 (52)
T d1skza1 13 CNIITDRCTCSGVRCRVHCPHGFQR 37 (52)
T ss_dssp CCTTTCSSCBCCCSSCCCCTTCEEE
T ss_pred ceeeccceeeccceEEEECCCcccc
Confidence 467889999997654 5566643
No 3
>d1t2ya_ g.46.1.1 (A:) Metallothionein {Neurospora crassa [TaxId: 5141]}
Probab=12.76 E-value=26 Score=18.55 Aligned_cols=10 Identities=60% Similarity=1.305 Sum_probs=6.9
Q ss_pred cccccchhhh
Q 024642 37 DCTCSISSCC 46 (265)
Q Consensus 37 ~~~~~~~~~~ 46 (265)
||.||-.|.|
T Consensus 2 dcgcsgassc 11 (26)
T d1t2ya_ 2 DCGCSGASSC 11 (26)
T ss_dssp CCSCSSTTTC
T ss_pred CcccCccccc
Confidence 7888766554
No 4
>d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse (Mus musculus) [TaxId: 10090]}
Probab=10.85 E-value=20 Score=25.45 Aligned_cols=21 Identities=52% Similarity=0.741 Sum_probs=18.3
Q ss_pred hhhhhhhhhhhcccCCceeec
Q 024642 44 SCCFNFFSNVTNQHSKTLHFT 64 (265)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~ 64 (265)
.|-+|+=|.+-+.||-|++|+
T Consensus 84 rCSanf~s~vieSHSvti~Vt 104 (104)
T d1xaua_ 84 SCSTNFNSQVINSHSVTIHVR 104 (104)
T ss_dssp EEEEEETTEEEECCCEEEEEC
T ss_pred EEecCCChhheecceEEEEeC
Confidence 355899999999999999986
No 5
>d1dfna_ g.9.1.1 (A:) Defensin HNP-3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.54 E-value=46 Score=18.15 Aligned_cols=9 Identities=56% Similarity=1.575 Sum_probs=6.4
Q ss_pred cccccchhh
Q 024642 37 DCTCSISSC 45 (265)
Q Consensus 37 ~~~~~~~~~ 45 (265)
||-|.|..|
T Consensus 1 dcycripac 9 (30)
T d1dfna_ 1 DCYCRIPAC 9 (30)
T ss_dssp CCEEESSCC
T ss_pred Cceeecchh
Confidence 677877654
No 6
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=6.23 E-value=5.7e+02 Score=19.92 Aligned_cols=14 Identities=0% Similarity=-0.427 Sum_probs=6.0
Q ss_pred HHHHHHHH-hcCcCc
Q 024642 221 VVPLFDGM-LGAIIP 234 (265)
Q Consensus 221 fv~lla~l-lker~s 234 (265)
.+.++.++ +.+|.-
T Consensus 37 ~~~~~~~vy~s~r~~ 51 (248)
T d2r6gf1 37 LSSAGLYIFANRKAY 51 (248)
T ss_dssp HHHHHHHHHSSSCCT
T ss_pred HHHheEEEEEccCcc
Confidence 33444454 444433
No 7
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=6.04 E-value=3.9e+02 Score=19.77 Aligned_cols=22 Identities=14% Similarity=0.099 Sum_probs=14.9
Q ss_pred cchhHHHHHHHhHHHHHHHHHH
Q 024642 206 SDAGRASFISLFTVIVVPLFDG 227 (265)
Q Consensus 206 tsa~~AavL~~l~Pvfv~lla~ 227 (265)
.+++..+++.+...+...+...
T Consensus 40 ~s~~~~g~i~s~~~l~~~i~~~ 61 (417)
T d1pv7a_ 40 ISKSDTGIIFAAISLFSLLFQP 61 (417)
T ss_dssp CCHHHHHHHHHHHHHHHHHTHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHH
Confidence 5777888887776665555554
No 8
>d1ew4a_ d.82.2.1 (A:) CyaY {Escherichia coli [TaxId: 562]}
Probab=5.35 E-value=1.1e+02 Score=21.25 Aligned_cols=24 Identities=25% Similarity=0.455 Sum_probs=15.8
Q ss_pred ceeecccccc-----cCCCccccccCCCc
Q 024642 60 TLHFTNLTHI-----IKNKCTWVIKAKGN 83 (265)
Q Consensus 60 ~~~~~~~~~~-----~~~~~~~~~~~~~~ 83 (265)
|++|.+-.++ -|+||=|-+-|-|.
T Consensus 40 ti~~~~~~~~VINkQ~p~~QIWlaSpsgg 68 (106)
T d1ew4a_ 40 TITFENGSKIIINRQEPLHQVWLATKQGG 68 (106)
T ss_dssp EEECTTSCEEEEEEETTTTEEEEECSSCE
T ss_pred EEEECCCCEEEEeCCCccceeeEECCCCC
Confidence 5556554443 39999999877543
No 9
>d1hh2p4 d.202.1.1 (P:1-126) Transcription factor NusA, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=5.28 E-value=30 Score=25.20 Aligned_cols=27 Identities=19% Similarity=0.306 Sum_probs=20.5
Q ss_pred hhhhhhhcccCCceeecccccccCCCc
Q 024642 48 NFFSNVTNQHSKTLHFTNLTHIIKNKC 74 (265)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (265)
..|+|.++|.++.+-....|...+.||
T Consensus 100 ~~fgRiaaq~akQ~i~Qkire~Ererq 126 (126)
T d1hh2p4 100 KNFGRIAAQTAKQVLIQRIRELEKEKQ 126 (126)
T ss_dssp CCSSSCSGGGHHHHHHHHHHHHTTCCS
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHccC
Confidence 359999999999887776666666554
No 10
>g3bzy.1 d.367.1.1 (A:246-262,B:263-345) Type III secretion proteins EscU {Escherichia coli [TaxId: 562]}
Probab=4.84 E-value=1e+02 Score=21.44 Aligned_cols=12 Identities=42% Similarity=0.434 Sum_probs=10.1
Q ss_pred Cceeeccccccc
Q 024642 59 KTLHFTNLTHII 70 (265)
Q Consensus 59 ~~~~~~~~~~~~ 70 (265)
-++-++||||+-
T Consensus 11 a~vvi~NPTh~A 22 (100)
T g3bzy.1 11 STVIVKNPTHIA 22 (100)
T ss_dssp CSEEEECCCCEE
T ss_pred CCEEEECCCEEE
Confidence 578899999975
Done!