BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024643
(265 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XQ6|A Chain A, X-ray Structure Of Gene Product From Arabidopsis Thaliana
At5g02240
pdb|1XQ6|B Chain B, X-ray Structure Of Gene Product From Arabidopsis Thaliana
At5g02240
pdb|1YBM|A Chain A, X-Ray Structure Of Selenomethionyl Gene Product From
Arabidopsis Thaliana At5g02240 In Space Group P21212
pdb|1YBM|B Chain B, X-Ray Structure Of Selenomethionyl Gene Product From
Arabidopsis Thaliana At5g02240 In Space Group P21212
pdb|2Q46|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Arabidopsis Thaliana At5g02240
pdb|2Q46|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Arabidopsis Thaliana At5g02240
pdb|2Q4B|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Selenomethionyl Gene Product From Arabidopsis Thaliana
At5g02240 In Space Group P21212
pdb|2Q4B|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of
Selenomethionyl Gene Product From Arabidopsis Thaliana
At5g02240 In Space Group P21212
Length = 253
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%)
Query: 177 NAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARKLAEQDESMLMASGIPYTIIRTGVL 236
+A + GV+H++++ + + L GN + E L SG PYTIIR G L
Sbjct: 118 DAAKVAGVKHIVVVGSMGGTNPDHPLNKLGNGNILVWKRKAEQYLADSGTPYTIIRAGGL 177
Query: 237 QNTPGG 242
+ GG
Sbjct: 178 LDKEGG 183
>pdb|2ZCU|A Chain A, Crystal Structure Of A New Type Of Nadph-Dependent Quinone
Oxidoreductase (Qor2) From Escherichia Coli
pdb|2ZCV|A Chain A, Crystal Structure Of Nadph-Dependent Quinone
Oxidoreductase Qor2 Complexed With Nadph From
Escherichia Coli
Length = 286
Score = 34.3 bits (77), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 63/152 (41%), Gaps = 34/152 (22%)
Query: 102 VLVTDGDSDIGQMVILSLI--VKRTRIKALVKD--KRNAMESFGTYVESMAGDASNKKFL 157
+ +T +G VI SL+ V ++I A+V++ K A+ + G V D ++ L
Sbjct: 2 IAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQALAAQGITVRQ--ADYGDEAAL 59
Query: 158 KTALRGVRSII----------CPSEGFISNAGSLKGVQHVILLSQLSVYRGSGGIQALMK 207
+AL+GV ++ P + NA GV+ + S L+
Sbjct: 60 TSALQGVEKLLLISSSEVGQRAPQHRNVINAAKAAGVKFIAYTS-------------LLH 106
Query: 208 GNARKLAEQDES-----MLMASGIPYTIIRTG 234
+ L DE ML SGI YT++R G
Sbjct: 107 ADTSPLGLADEHIETEKMLADSGIVYTLLRNG 138
>pdb|3TSB|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Bacillus Anthracis Str. Ames
pdb|3TSB|B Chain B, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Bacillus Anthracis Str. Ames
pdb|3TSD|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Bacillus Anthracis Str. Ames
Complexed With Xmp
pdb|3TSD|B Chain B, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Bacillus Anthracis Str. Ames
Complexed With Xmp
Length = 511
Score = 28.1 bits (61), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 9/77 (11%)
Query: 192 QLSVYRGSGGIQALMKGNARKLAEQDESMLMASGIPYTIIRTGVLQNT-----PGGKQGF 246
Q VYRG G + A+ KG+ + ++ L+ GI + G L +T G + G
Sbjct: 408 QFKVYRGMGSVGAMEKGSKDRYFQEGNKKLVPEGIEGRVPYKGPLADTVHQLVGGLRAGM 467
Query: 247 QFEEVLNFACQLKFLRE 263
+ A L+FLRE
Sbjct: 468 GY----CGAQDLEFLRE 480
>pdb|3USB|A Chain A, Crystal Structure Of Bacillus Anthracis Inosine
Monophosphate Dehydrogenase In The Complex With Imp
pdb|3USB|B Chain B, Crystal Structure Of Bacillus Anthracis Inosine
Monophosphate Dehydrogenase In The Complex With Imp
Length = 511
Score = 27.3 bits (59), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 23/48 (47%)
Query: 192 QLSVYRGSGGIQALMKGNARKLAEQDESMLMASGIPYTIIRTGVLQNT 239
Q VYRG G + A KG+ + ++ L+ GI + G L +T
Sbjct: 408 QFKVYRGXGSVGAXEKGSKDRYFQEGNKKLVPEGIEGRVPYKGPLADT 455
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,975,067
Number of Sequences: 62578
Number of extensions: 252250
Number of successful extensions: 465
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 462
Number of HSP's gapped (non-prelim): 8
length of query: 265
length of database: 14,973,337
effective HSP length: 97
effective length of query: 168
effective length of database: 8,903,271
effective search space: 1495749528
effective search space used: 1495749528
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)