BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024643
(265 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P49534|YCF39_ODOSI Uncharacterized protein ycf39 OS=Odontella sinensis GN=ycf39 PE=3
SV=1
Length = 319
Score = 41.6 bits (96), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 70/144 (48%), Gaps = 14/144 (9%)
Query: 101 AVLVTDGDSDIGQMVILSLIVKRTRIKALVKD--KRNAMESFGTYVESMAGDASNKKFLK 158
++L+ G +G+ V+L + K +++ LV++ K N ++ +G E + GD S + +
Sbjct: 2 SLLIIGGTGTLGRQVVLQALTKGYQVRCLVRNFRKANFLKEWGA--ELIYGDLSRPETIP 59
Query: 159 TALRGVRSIICPSEGFISNAGSLKGVQH-----VILLSQLS-----VYRGSGGIQALMKG 208
L+G+ ++I S S+ +LK V +I +Q + V+ S ++ +
Sbjct: 60 PCLQGITAVIDTSTSRPSDLDTLKQVDWDGKCALIEAAQAANVKHFVFCSSQNVEQFLNI 119
Query: 209 NARKLAEQDESMLMASGIPYTIIR 232
++ E+ L S IPYT+ R
Sbjct: 120 PLMEMKFGIETKLQQSNIPYTVFR 143
>sp|Q94EG6|Y5224_ARATH Uncharacterized protein At5g02240 OS=Arabidopsis thaliana
GN=At5g02240 PE=1 SV=1
Length = 253
Score = 40.0 bits (92), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%)
Query: 177 NAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARKLAEQDESMLMASGIPYTIIRTGVL 236
+A + GV+H++++ + + L GN + E L SG PYTIIR G L
Sbjct: 118 DAAKVAGVKHIVVVGSMGGTNPDHPLNKLGNGNILVWKRKAEQYLADSGTPYTIIRAGGL 177
Query: 237 QNTPGG 242
+ GG
Sbjct: 178 LDKEGG 183
>sp|O80934|Y2766_ARATH Uncharacterized protein At2g37660, chloroplastic OS=Arabidopsis
thaliana GN=At2g37660 PE=1 SV=2
Length = 325
Score = 38.9 bits (89), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 33/66 (50%)
Query: 177 NAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARKLAEQDESMLMASGIPYTIIRTGVL 236
+A GV+ ++L+ + + + ++ N + E L SGIPYTIIR G L
Sbjct: 190 DAAKAAGVKQIVLVGSMGGTNINHPLNSIGNANILVWKRKAEQYLADSGIPYTIIRAGGL 249
Query: 237 QNTPGG 242
Q+ GG
Sbjct: 250 QDKDGG 255
>sp|Q8KU07|AZOB_XENAZ NAD(P)H azoreductase OS=Xenophilus azovorans GN=azoB PE=1 SV=2
Length = 286
Score = 37.0 bits (84), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 65/147 (44%), Gaps = 17/147 (11%)
Query: 102 VLVTDGDSDIGQMVILSLIVKRTRIKALVKDKRNAMESFGTYVESMAGDASNKKFLKTAL 161
+LV G IG V+ L + KALV+D A E V++ AGD + L AL
Sbjct: 2 ILVVGGTGTIGSEVVRLLQEAKLPFKALVRDAAKARELNARGVQTAAGDLREPRTLPAAL 61
Query: 162 RGVRSI-----ICPSE----GFISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARK 212
GV + + P + + A GV+H ++ + + G+ + G R
Sbjct: 62 GGVDKVFVVTPLVPDQVQMRAALITAAKTAGVKHFVMSTGI----GAAPDSPVQIG--RW 115
Query: 213 LAEQDESMLMASGIPYTIIRTG-VLQN 238
L E ++ + SG+ +T ++ G +QN
Sbjct: 116 LGE-NQQQVQESGMAWTFVQPGFFMQN 141
>sp|P39315|QOR2_ECOLI Quinone oxidoreductase 2 OS=Escherichia coli (strain K12) GN=qorB
PE=1 SV=1
Length = 286
Score = 34.7 bits (78), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 63/152 (41%), Gaps = 34/152 (22%)
Query: 102 VLVTDGDSDIGQMVILSLI--VKRTRIKALVKD--KRNAMESFGTYVESMAGDASNKKFL 157
+ +T +G VI SL+ V ++I A+V++ K A+ + G V D ++ L
Sbjct: 2 IAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQALAAQGITVRQ--ADYGDEAAL 59
Query: 158 KTALRGVRSII----------CPSEGFISNAGSLKGVQHVILLSQLSVYRGSGGIQALMK 207
+AL+GV ++ P + NA GV+ + S L+
Sbjct: 60 TSALQGVEKLLLISSSEVGQRAPQHRNVINAAKAAGVKFIAYTS-------------LLH 106
Query: 208 GNARKLAEQDES-----MLMASGIPYTIIRTG 234
+ L DE ML SGI YT++R G
Sbjct: 107 ADTSPLGLADEHIETEKMLADSGIVYTLLRNG 138
>sp|Q6MGT1|RIMO_BDEBA Ribosomal protein S12 methylthiotransferase RimO OS=Bdellovibrio
bacteriovorus (strain ATCC 15356 / DSM 50701 / NCIB 9529
/ HD100) GN=rimO PE=3 SV=1
Length = 457
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 203 QALMKGNARKLAEQDESMLMA--SGIPYTIIRTGVLQNTPGGKQGFQFEEVLNFACQLKF 260
Q L N + ++ E+ LM +P +IRT + PG Q QFEE+LNF + +F
Sbjct: 281 QVLKSMNRKMTRDEIETALMNIREHLPEAVIRTQFIVGFPGETQE-QFEELLNFVAEQQF 339
Query: 261 LR 262
R
Sbjct: 340 DR 341
>sp|O07609|YHFK_BACSU Uncharacterized sugar epimerase YhfK OS=Bacillus subtilis (strain
168) GN=yhfK PE=2 SV=1
Length = 214
Score = 32.7 bits (73), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 18/24 (75%)
Query: 218 ESMLMASGIPYTIIRTGVLQNTPG 241
+ +L ASG+ YTIIR G L+N PG
Sbjct: 137 DKILEASGLTYTIIRPGGLRNEPG 160
>sp|Q7ZXX2|KIF19_XENLA Kinesin-like protein KIF19 OS=Xenopus laevis GN=kif19 PE=2 SV=1
Length = 997
Score = 31.6 bits (70), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 28/52 (53%)
Query: 164 VRSIICPSEGFISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARKLAE 215
+R ++ PS G++ KGV V ++++S +Q LMKGN ++ E
Sbjct: 158 IRDLLNPSLGYLDLREDSKGVIQVAGITEVSTINAKEIMQLLMKGNRQRTQE 209
>sp|Q8H124|Y2446_ARATH Uncharacterized protein At2g34460, chloroplastic OS=Arabidopsis
thaliana GN=At2g34460 PE=1 SV=1
Length = 280
Score = 31.2 bits (69), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 65/171 (38%), Gaps = 35/171 (20%)
Query: 102 VLVTDGDSDIGQMVILSLIVKRTRIKALVKDKRNAMESFGT----------------YVE 145
V V G+ ++ L+ + +KA V+D A SF +
Sbjct: 49 VFVAGATGQTGKRIVEQLLSRGFAVKAGVRDVEKAKTSFKDDPSLQIVRADVTEGPDKLA 108
Query: 146 SMAGDASNKKFLKTALRGVRSIICPSEGFISNAGSL--------KGVQHVILLSQLSVYR 197
+ GD S T R I P + + N G++ +GV+ +L+S + V
Sbjct: 109 EVIGDDSQAVICATGFRPGFDIFTPWK--VDNFGTVNLVDACRKQGVEKFVLVSSILVNG 166
Query: 198 GSGGIQAL--------MKGNARKLAEQDESMLMASGIPYTIIRTGVLQNTP 240
+ G Q L + G Q E + SGI YTI+R G L+N P
Sbjct: 167 AAMG-QILNPAYLFLNLFGLTLVAKLQAEKYIKKSGINYTIVRPGGLKNDP 216
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.134 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,796,728
Number of Sequences: 539616
Number of extensions: 3961151
Number of successful extensions: 17227
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 17167
Number of HSP's gapped (non-prelim): 65
length of query: 265
length of database: 191,569,459
effective HSP length: 115
effective length of query: 150
effective length of database: 129,513,619
effective search space: 19427042850
effective search space used: 19427042850
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)