Query 024644
Match_columns 265
No_of_seqs 282 out of 1370
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 06:18:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024644.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024644hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0699 Serine/threonine prote 100.0 3.1E-45 6.8E-50 322.9 16.2 181 57-237 325-507 (542)
2 KOG0697 Protein phosphatase 1B 100.0 3.6E-43 7.7E-48 300.6 15.8 172 61-237 124-295 (379)
3 PLN03145 Protein phosphatase 2 100.0 2.1E-39 4.6E-44 296.9 19.6 168 61-235 165-332 (365)
4 PTZ00224 protein phosphatase 2 100.0 2.3E-37 5.1E-42 284.5 20.5 170 61-236 103-274 (381)
5 KOG0698 Serine/threonine prote 100.0 2.2E-37 4.7E-42 281.4 19.6 169 60-241 138-312 (330)
6 PF00481 PP2C: Protein phospha 100.0 4E-37 8.7E-42 270.1 11.2 156 60-225 97-254 (254)
7 COG0631 PTC1 Serine/threonine 100.0 4.1E-34 9E-39 252.2 12.6 150 60-236 106-255 (262)
8 KOG0700 Protein phosphatase 2C 100.0 1.7E-32 3.8E-37 246.8 7.1 189 24-215 166-378 (390)
9 smart00332 PP2Cc Serine/threon 100.0 1.2E-28 2.5E-33 215.0 18.3 156 60-230 100-255 (255)
10 cd00143 PP2Cc Serine/threonine 100.0 4.6E-28 9.9E-33 210.5 18.9 158 60-232 97-254 (254)
11 PRK14559 putative protein seri 100.0 1.8E-28 4E-33 237.5 15.8 156 60-237 482-639 (645)
12 KOG1323 Serine/threonine phosp 99.9 7.5E-26 1.6E-30 198.6 10.3 198 28-236 221-490 (493)
13 KOG1379 Serine/threonine prote 99.8 2.2E-18 4.7E-23 151.3 14.3 142 62-231 167-329 (330)
14 KOG0618 Serine/threonine phosp 99.7 7.7E-17 1.7E-21 157.8 10.6 146 74-237 629-776 (1081)
15 smart00331 PP2C_SIG Sigma fact 99.4 1.9E-12 4.1E-17 108.5 12.8 106 61-212 84-192 (193)
16 PF13672 PP2C_2: Protein phosp 99.3 3.3E-12 7.2E-17 108.7 6.8 100 60-195 95-196 (212)
17 TIGR02865 spore_II_E stage II 99.2 1.6E-10 3.6E-15 115.7 14.2 123 61-232 634-763 (764)
18 PF07228 SpoIIE: Stage II spor 99.2 3.7E-10 8E-15 94.4 12.7 124 61-233 59-193 (193)
19 COG2208 RsbU Serine phosphatas 98.0 0.00013 2.7E-09 67.6 13.6 124 62-233 231-366 (367)
20 COG5518 Bacteriophage capsid p 56.7 38 0.00083 31.5 6.5 136 70-235 189-332 (492)
21 COG3700 AphA Acid phosphatase 54.3 36 0.00077 28.6 5.4 47 167-213 71-128 (237)
22 PF09436 DUF2016: Domain of un 48.2 11 0.00025 26.5 1.4 20 163-182 23-42 (72)
23 PF05785 CNF1: Rho-activating 42.0 33 0.00071 30.6 3.6 26 58-84 128-153 (281)
24 PF01436 NHL: NHL repeat; Int 36.2 58 0.0013 18.0 2.9 21 69-89 8-28 (28)
25 COG1539 FolB Dihydroneopterin 34.0 2.2E+02 0.0048 22.0 6.9 62 172-240 43-106 (121)
26 cd00534 DHNA_DHNTPE Dihydroneo 32.9 1.9E+02 0.0041 21.8 6.3 58 172-236 42-101 (118)
27 TIGR00525 folB dihydroneopteri 31.3 2E+02 0.0044 21.6 6.2 58 172-236 41-100 (116)
28 PRK11593 folB bifunctional dih 30.3 2.2E+02 0.0047 21.6 6.3 58 172-237 42-101 (119)
29 TIGR00526 folB_dom FolB domain 25.9 2.6E+02 0.0056 21.0 6.0 57 173-236 43-101 (118)
30 PRK11245 folX D-erythro-7,8-di 24.0 3E+02 0.0065 20.9 6.0 58 172-237 46-105 (120)
31 PF06972 DUF1296: Protein of u 21.4 1.8E+02 0.0039 19.7 3.6 27 180-209 18-44 (60)
32 PF02152 FolB: Dihydroneopteri 21.4 2.5E+02 0.0054 20.8 5.1 57 174-237 41-99 (113)
33 PF05402 PqqD: Coenzyme PQQ sy 21.2 2.3E+02 0.005 18.7 4.4 27 184-210 16-42 (68)
34 COG0528 PyrH Uridylate kinase 20.3 2.1E+02 0.0045 25.0 4.8 51 168-236 155-221 (238)
35 TIGR03859 PQQ_PqqD coenzyme PQ 20.1 3.2E+02 0.007 19.2 5.1 41 167-210 16-56 (81)
No 1
>KOG0699 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=3.1e-45 Score=322.93 Aligned_cols=181 Identities=52% Similarity=0.917 Sum_probs=173.7
Q ss_pred CCCCCCcceeEEEEEECCeEEEEEEccccEEEEECCeeeecCCCCCCChHHHHHHHHhcCceEe-eccccCccccccccc
Q 024644 57 FAGPTSGSTACVAIIRNNHLIVANAGDSRCVISRKGQAYNLSRDHKPDLEAEKERILKAGGFIH-AGRVNGSLNLARAIG 135 (265)
Q Consensus 57 ~~~~~~GtTa~v~li~~~~l~ianvGDSR~~l~r~g~~~~LT~DH~~~~~~e~~ri~~~g~~v~-~~r~~g~l~ltralG 135 (265)
..|..+|||+||+++.+.+|||||+||||||++|+|+++.||.||+|..+.|..||..+||.|. .+|+||+|+++||||
T Consensus 325 ePG~DSGtTAvVcLv~g~~liVANAGDSRcV~sr~GkAvdmS~DHKPEDevE~~RI~~AGG~vtlDGRVNGGLNLSRA~G 404 (542)
T KOG0699|consen 325 EPGEDSGTTAVVCLVGGDKLIVANAGDSRCVLSRNGKAVDMSVDHKPEDEVETNRIHAAGGQVTLDGRVNGGLNLSRAFG 404 (542)
T ss_pred CCCCCCCceEEEEEecCceEEEecCCCcceEEecCCceeecccCCCcccHHHHHHHHhcCCeEeecceecCccchhhhhh
Confidence 3455699999999999999999999999999999999999999999999999999999999998 899999999999999
Q ss_pred chhhhcccccccccceeeecCceeEEEecCCCcEEEEEcCCCccCCCHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCC
Q 024644 136 DMEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESKISAVCERVLERCLAPS 215 (265)
Q Consensus 136 d~~~k~~~~~~~~~~~v~~~P~i~~~~l~~~d~~liLaSDGlwd~ls~~ei~~~v~~~~~~~~~~~~~a~~l~~~a~~~~ 215 (265)
|..||.+..+|+.+|+|++-|+|....|++.|+|+|+||||||++|+.+++++||+..+..+..+..||+.|++.|+++.
T Consensus 405 DHaYK~N~~Lp~eEQMIsALPDiK~l~lTpedEFmVvACDGIWN~MsSqeVVdFvr~~l~~n~~ls~iceeL~D~CLAp~ 484 (542)
T KOG0699|consen 405 DHAYKKNQELPLEEQMISALPDIKILALTPEDEFMVVACDGIWNSMSSQEVVDFVRDLLAKNSSLSEICEELCDACLAPS 484 (542)
T ss_pred hhhhhcccCCChHHHHhhhcccceeEeecCcccEEEEEccchhhhccHHHHHHHHHHHHhcCchHHHHHHHHHHhhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC-CCCCCCceEEEEEecCCCC
Q 024644 216 TAG-GEGCDNMTMIIVQFKKPIQ 237 (265)
Q Consensus 216 ~~~-~~~~DNiTvivv~~~~~~~ 237 (265)
+.+ +.+|||||||++.|++...
T Consensus 485 T~GDGTGCDNMT~ii~~Fkrk~~ 507 (542)
T KOG0699|consen 485 TDGDGTGCDNMTVIITTFKRKSK 507 (542)
T ss_pred CCCCCcCCCcceEEEEEeccchh
Confidence 887 7889999999999996533
No 2
>KOG0697 consensus Protein phosphatase 1B (formerly 2C) [Signal transduction mechanisms]
Probab=100.00 E-value=3.6e-43 Score=300.60 Aligned_cols=172 Identities=40% Similarity=0.736 Sum_probs=166.8
Q ss_pred CCcceeEEEEEECCeEEEEEEccccEEEEECCeeeecCCCCCCChHHHHHHHHhcCceEeeccccCcccccccccchhhh
Q 024644 61 TSGSTACVAIIRNNHLIVANAGDSRCVISRKGQAYNLSRDHKPDLEAEKERILKAGGFIHAGRVNGSLNLARAIGDMEFK 140 (265)
Q Consensus 61 ~~GtTa~v~li~~~~l~ianvGDSR~~l~r~g~~~~LT~DH~~~~~~e~~ri~~~g~~v~~~r~~g~l~ltralGd~~~k 140 (265)
.+||||+.+++...++|++|+||||++++|+|+++.-|.||+|.++.|++||+++||.|.-.|+||.|+++|||||++||
T Consensus 124 rsGsTAVcv~vsp~h~y~~NcGDSRavl~rng~~~f~TqDHKP~~p~EkeRIqnAGGSVMIqRvNGsLAVSRAlGDydyK 203 (379)
T KOG0697|consen 124 RSGSTAVCVFVSPTHIYIINCGDSRAVLCRNGEVVFSTQDHKPYLPKEKERIQNAGGSVMIQRVNGSLAVSRALGDYDYK 203 (379)
T ss_pred cCCceEEEEEecCceEEEEecCcchhheecCCceEEeccCCCCCChHHHHHHhcCCCeEEEEEecceeeeehhccCcccc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccceeeecCceeEEEecCCCcEEEEEcCCCccCCCHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCCCCC
Q 024644 141 QNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESKISAVCERVLERCLAPSTAGGE 220 (265)
Q Consensus 141 ~~~~~~~~~~~v~~~P~i~~~~l~~~d~~liLaSDGlwd~ls~~ei~~~v~~~~~~~~~~~~~a~~l~~~a~~~~~~~~~ 220 (265)
..+..++.+|+|+++|+|........|+|||||||||||+|+++|++++|+..+.-..++..+|..+++.|+- +|
T Consensus 204 ~v~~kgp~eQlVSPEPev~~~~R~eedeFivlACDGIwDVMtneelcefv~sRl~Vt~dL~~vcn~VvDtCLh-----KG 278 (379)
T KOG0697|consen 204 NVPGKGPTEQLVSPEPEVYIIERSEEDEFIVLACDGIWDVMTNEELCEFVKSRLEVTSDLEEVCNDVVDTCLH-----KG 278 (379)
T ss_pred cCCCCCchhcccCCCCceEEeeccccCcEEEEEccchhhhcccHHHHHHHHhhheecccHHHHHHHHHHHHHh-----cc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999 78
Q ss_pred CCCCceEEEEEecCCCC
Q 024644 221 GCDNMTMIIVQFKKPIQ 237 (265)
Q Consensus 221 ~~DNiTvivv~~~~~~~ 237 (265)
+.||||+|+|.|...+.
T Consensus 279 SRDNMsivlvcfp~APk 295 (379)
T KOG0697|consen 279 SRDNMSIVLVCFPGAPK 295 (379)
T ss_pred CccCceEEEEecCCCCC
Confidence 99999999999986543
No 3
>PLN03145 Protein phosphatase 2c; Provisional
Probab=100.00 E-value=2.1e-39 Score=296.90 Aligned_cols=168 Identities=36% Similarity=0.696 Sum_probs=153.5
Q ss_pred CCcceeEEEEEECCeEEEEEEccccEEEEECCeeeecCCCCCCChHHHHHHHHhcCceEeeccccCcccccccccchhhh
Q 024644 61 TSGSTACVAIIRNNHLIVANAGDSRCVISRKGQAYNLSRDHKPDLEAEKERILKAGGFIHAGRVNGSLNLARAIGDMEFK 140 (265)
Q Consensus 61 ~~GtTa~v~li~~~~l~ianvGDSR~~l~r~g~~~~LT~DH~~~~~~e~~ri~~~g~~v~~~r~~g~l~ltralGd~~~k 140 (265)
.||||+++++|.++++|||||||||+|++++|++.+||+||++.++.|++||...|+.+..+|++|.+++||||||+.+|
T Consensus 165 ~~GTTavv~li~~~~l~vaNvGDSRayl~r~g~~~~LT~DH~~~~~~E~~RI~~~Gg~v~~g~v~g~l~vTRalGD~~~k 244 (365)
T PLN03145 165 ASGTTALAALVVGRSLVVANAGDCRAVLCRRGKAIEMSRDHKPMCSKERKRIEASGGYVYDGYLNGQLNVARALGDWHME 244 (365)
T ss_pred CCcCcEEEEEEECCeEEEEecCCceEEEEcCCeEEEecCCCCCCCHHHHHHHHHcCCceecceECCcccccccccccccc
Confidence 49999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred cccccccccceeeecCceeEEEecCCCcEEEEEcCCCccCCCHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCCCCC
Q 024644 141 QNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESKISAVCERVLERCLAPSTAGGE 220 (265)
Q Consensus 141 ~~~~~~~~~~~v~~~P~i~~~~l~~~d~~liLaSDGlwd~ls~~ei~~~v~~~~~~~~~~~~~a~~l~~~a~~~~~~~~~ 220 (265)
..+. .....++++|++..+++.++|+|||||||||||+|+++++++++++.+....+++.+|+.|++.|+. ++
T Consensus 245 ~~k~--~~~~~vs~ePdv~~~~l~~~D~fLILaSDGLwdvls~ee~v~~i~~~l~~~~~p~~aa~~Lv~~Al~-----rg 317 (365)
T PLN03145 245 GMKG--SDGGPLSAEPELMTTQLTEEDEFLIIGCDGIWDVFRSQNAVDFARRRLQEHNDPVMCSKELVDEALK-----RK 317 (365)
T ss_pred cccc--ccCCCcceEEEEEEEECCCCCEEEEEeCCccccCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-----CC
Confidence 4321 1123368999999999999999999999999999999999999988776667899999999999999 78
Q ss_pred CCCCceEEEEEecCC
Q 024644 221 GCDNMTMIIVQFKKP 235 (265)
Q Consensus 221 ~~DNiTvivv~~~~~ 235 (265)
+.||+|||||+|...
T Consensus 318 s~DNITvIVV~l~~~ 332 (365)
T PLN03145 318 SGDNLAVVVVCFQSQ 332 (365)
T ss_pred CCCCEEEEEEEeecC
Confidence 899999999999974
No 4
>PTZ00224 protein phosphatase 2C; Provisional
Probab=100.00 E-value=2.3e-37 Score=284.50 Aligned_cols=170 Identities=35% Similarity=0.598 Sum_probs=153.4
Q ss_pred CCcceeEEEEEE-CCeEEEEEEccccEEEEECCeeeecCCCCCCChHHHHHHHHhcCceEeeccccCcccccccccchhh
Q 024644 61 TSGSTACVAIIR-NNHLIVANAGDSRCVISRKGQAYNLSRDHKPDLEAEKERILKAGGFIHAGRVNGSLNLARAIGDMEF 139 (265)
Q Consensus 61 ~~GtTa~v~li~-~~~l~ianvGDSR~~l~r~g~~~~LT~DH~~~~~~e~~ri~~~g~~v~~~r~~g~l~ltralGd~~~ 139 (265)
.+|||+++++|. ++++|||||||||+|++|+|++.+||+||++.++.|+.||...++.+...|++|.+++||||||..|
T Consensus 103 ~~GsTatv~lI~~~~~l~vaNVGDSRayl~r~g~~~~LT~DH~~~~~~E~~RI~~~gg~v~~~Rv~G~l~vTRalGd~~~ 182 (381)
T PTZ00224 103 EGGSTGTFCVIMKDVHLQVGNVGDSRVLVCRDGKLVFATEDHKPNNPGERQRIEACGGRVVSNRVDGDLAVSRAFGDRSF 182 (381)
T ss_pred CCCCeEEEEEEEECCEEEEEEcccceEEEEECCEEEEcccCCCCCCHHHHhHHHHccCEeccccccCceeeecccCCccc
Confidence 369999998886 5799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccccccceeeecCceeEEEecCCCcEEEEEcCCCcc-CCCHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCCC
Q 024644 140 KQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWD-CMSSQQLVDFIHEQLHSESKISAVCERVLERCLAPSTAG 218 (265)
Q Consensus 140 k~~~~~~~~~~~v~~~P~i~~~~l~~~d~~liLaSDGlwd-~ls~~ei~~~v~~~~~~~~~~~~~a~~l~~~a~~~~~~~ 218 (265)
|..+..+...+.|+++|+|..+.+.++| ||||||||||| +++++++.+++.+.+....+++.+|+.|++.|+.
T Consensus 183 K~~~~~~~~~~~v~~~Pdi~~~~l~~~D-~llLaSDGL~d~~ls~eEi~~iv~~~l~~~~~~~~aA~~Lv~~A~~----- 256 (381)
T PTZ00224 183 KVKGTGDYLEQKVIAVPDVTHLTCQSND-FIILACDGVFEGNFSNEEVVAFVKEQLETCDDLAVVAGRVCDEAIR----- 256 (381)
T ss_pred ccccccccccCcceeeeEEEEEECCCCC-EEEEECCCcCcCccCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh-----
Confidence 9776544455678899999999998665 99999999999 7999999999987665566899999999999999
Q ss_pred CCCCCCceEEEEEecCCC
Q 024644 219 GEGCDNMTMIIVQFKKPI 236 (265)
Q Consensus 219 ~~~~DNiTvivv~~~~~~ 236 (265)
+++.||+|||||+|....
T Consensus 257 rGs~DNITvIvV~~~~~~ 274 (381)
T PTZ00224 257 RGSKDNISCLIVQLKDGA 274 (381)
T ss_pred cCCCCCEEEEEEEeeCCC
Confidence 789999999999999643
No 5
>KOG0698 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=2.2e-37 Score=281.41 Aligned_cols=169 Identities=47% Similarity=0.705 Sum_probs=153.0
Q ss_pred CCCcceeEEEEEECC-eEEEEEEccccEEEEECC-eeeecCCCCCCChHHHHHHHHhcCceEee----ccccCccccccc
Q 024644 60 PTSGSTACVAIIRNN-HLIVANAGDSRCVISRKG-QAYNLSRDHKPDLEAEKERILKAGGFIHA----GRVNGSLNLARA 133 (265)
Q Consensus 60 ~~~GtTa~v~li~~~-~l~ianvGDSR~~l~r~g-~~~~LT~DH~~~~~~e~~ri~~~g~~v~~----~r~~g~l~ltra 133 (265)
..+|||++++++.++ ++||||+||||++|+++| .+++||.||+|..+.|+.||..+||.+.. .|++|.|+++|+
T Consensus 138 ~~~gstav~~vi~~~~~l~vaN~GDSRaVl~~~~~~a~~Ls~DHkP~~~~E~~RI~~~GG~v~~~~~~~Rv~G~LavsRa 217 (330)
T KOG0698|consen 138 RSGGSTAVVALIKKGRKLYVANVGDSRAVLSRKGGVAVQLSVDHKPDREDERERIEAAGGRVSNWGGVWRVNGVLAVSRA 217 (330)
T ss_pred CCCcceeeeeeEecCCEEEEEEcCCCcEEEecCCCeeeeCCCCCCCCcHHHHHHHHHcCCEEEEcCCcceEeceEEEeee
Confidence 358899999888855 999999999999999866 89999999999999999999999999983 599999999999
Q ss_pred ccchhhhcccccccccceeeecCceeEEEecCCCcEEEEEcCCCccCCCHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhc
Q 024644 134 IGDMEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESKISAVCERVLERCLA 213 (265)
Q Consensus 134 lGd~~~k~~~~~~~~~~~v~~~P~i~~~~l~~~d~~liLaSDGlwd~ls~~ei~~~v~~~~~~~~~~~~~a~~l~~~a~~ 213 (265)
|||+.+|. +.|+++|++....+...|+|||||||||||+++++|++++|+..+.....+..++..+...|+.
T Consensus 218 ~GD~~~k~--------~~v~a~Pei~~~~~~~~deFLiLasDGiwDv~s~qeav~~V~~~~~~~~~~~~a~~~l~~~a~~ 289 (330)
T KOG0698|consen 218 FGDVELKS--------QGVIAEPEIQQVKINSDDEFLILASDGIWDVVSNQEAVDLVRDELASISSPLAAAKLLATEALS 289 (330)
T ss_pred cCCHHhcC--------CcEecCCceEEEEcCCCCcEEEEeCCchhcccChHHHHHHHHHHhhccccHHHHHHHHHHHHhh
Confidence 99999985 5689999999999999999999999999999999999999999765566788899999999988
Q ss_pred CCCCCCCCCCCceEEEEEecCCCCCCCC
Q 024644 214 PSTAGGEGCDNMTMIIVQFKKPIQSTSS 241 (265)
Q Consensus 214 ~~~~~~~~~DNiTvivv~~~~~~~~~~~ 241 (265)
+++.||||||||.|.+.......
T Consensus 290 -----~~s~DnitvvvV~l~~~~~~~~~ 312 (330)
T KOG0698|consen 290 -----RGSKDNITVVVVRLKSSPKSPSS 312 (330)
T ss_pred -----cCCCCCeEEEEEEecCccccccC
Confidence 78999999999999987554443
No 6
>PF00481 PP2C: Protein phosphatase 2C; InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 2I0O_A 2POP_C 2POM_A 2J4O_A 2I44_B 3MQ3_A 3N3C_A 2PNQ_B 2P8E_A 2IQ1_A ....
Probab=100.00 E-value=4e-37 Score=270.15 Aligned_cols=156 Identities=47% Similarity=0.763 Sum_probs=135.1
Q ss_pred CCCcceeEEEEEECCeEEEEEEccccEEEEECCeee-ecCCCCCCChHHHHHHHHhcCceEe-eccccCcccccccccch
Q 024644 60 PTSGSTACVAIIRNNHLIVANAGDSRCVISRKGQAY-NLSRDHKPDLEAEKERILKAGGFIH-AGRVNGSLNLARAIGDM 137 (265)
Q Consensus 60 ~~~GtTa~v~li~~~~l~ianvGDSR~~l~r~g~~~-~LT~DH~~~~~~e~~ri~~~g~~v~-~~r~~g~l~ltralGd~ 137 (265)
..+|||+++++|.++++|+|||||||+|+++++... +||+||+|.++.|+.||..+|+.+. ..|++|.|++||||||+
T Consensus 97 ~~~GsTa~v~li~~~~l~vanvGDSravl~~~~~~~~~Lt~dH~~~~~~E~~RI~~~gg~v~~~~rv~g~l~~sRalGd~ 176 (254)
T PF00481_consen 97 SKSGSTATVALIDGNKLYVANVGDSRAVLCRNGGIIKQLTRDHKPSNPDERERIRKAGGRVSENGRVNGVLAVSRALGDF 176 (254)
T ss_dssp TTSEEEEEEEEEETTEEEEEEESS-EEEEEETTEEEEESS---STTSHHHHHHHHHTT-GEEETEEETTTBSSSB-EE-G
T ss_pred ccccccccccccccceeEEEeeeeeeeeeeeccccccccccccccchhhccceeeccccccccchhhhhccccccccccc
Confidence 469999999999999999999999999999999888 9999999999999999999999999 89999999999999999
Q ss_pred hhhcccccccccceeeecCceeEEEecCCCcEEEEEcCCCccCCCHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCC
Q 024644 138 EFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESKISAVCERVLERCLAPSTA 217 (265)
Q Consensus 138 ~~k~~~~~~~~~~~v~~~P~i~~~~l~~~d~~liLaSDGlwd~ls~~ei~~~v~~~~~~~~~~~~~a~~l~~~a~~~~~~ 217 (265)
.+|... ++.|+++|+|..+.+.++|+|||||||||||+|+++++++++++....+..++.+|+.|++.|++
T Consensus 177 ~~k~~~-----~~~v~~~P~i~~~~l~~~d~flvlaSDGlwd~l~~~ei~~~v~~~~~~~~~~~~~a~~L~~~A~~---- 247 (254)
T PF00481_consen 177 DLKPPG-----KPGVIAEPDISEVDLTPDDEFLVLASDGLWDVLSNEEIVDIVRESLNSGRSPQEAAEKLVDEAIA---- 247 (254)
T ss_dssp GGTTCT-----SSSSB---EEEEEEEBTTEEEEEEE-HHHHTTSHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHH----
T ss_pred cccccc-----cceeeeecccccccccccceEEEEEcccccccCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHh----
Confidence 998643 45689999999999999988999999999999999999999999876656799999999999999
Q ss_pred CCCCCCCc
Q 024644 218 GGEGCDNM 225 (265)
Q Consensus 218 ~~~~~DNi 225 (265)
+++.|||
T Consensus 248 -~gs~DNi 254 (254)
T PF00481_consen 248 -RGSKDNI 254 (254)
T ss_dssp -TTHHSHE
T ss_pred -cCCCCCC
Confidence 7899996
No 7
>COG0631 PTC1 Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=4.1e-34 Score=252.16 Aligned_cols=150 Identities=33% Similarity=0.569 Sum_probs=141.8
Q ss_pred CCCcceeEEEEEECCeEEEEEEccccEEEEECCeeeecCCCCCCChHHHHHHHHhcCceEeeccccCcccccccccchhh
Q 024644 60 PTSGSTACVAIIRNNHLIVANAGDSRCVISRKGQAYNLSRDHKPDLEAEKERILKAGGFIHAGRVNGSLNLARAIGDMEF 139 (265)
Q Consensus 60 ~~~GtTa~v~li~~~~l~ianvGDSR~~l~r~g~~~~LT~DH~~~~~~e~~ri~~~g~~v~~~r~~g~l~ltralGd~~~ 139 (265)
.+||||++++++.++++|+|||||||+|++|+|.+.+||.||++.+..++.|++.+++...++|++ ++|||||+..
T Consensus 106 ~~mgtTl~~~~~~~~~l~~a~vGDSR~yl~~~~~~~~lT~DH~~~~~~~~~~~~~~~~~~~~~~~~---~ltralG~~~- 181 (262)
T COG0631 106 RGMGTTLVLLLIRGNKLYVANVGDSRAYLLRDGELKQLTEDHSLVNRLEQRGIITPEEARSHPRRN---ALTRALGDFD- 181 (262)
T ss_pred CCCceeEEEEEEECCeEEEEEccCCeEEEEcCCceEEeccCCcHHHHHHHhcCCCHHHHHhCccch---hhhhhcCCCc-
Confidence 469999999999999999999999999999999999999999999999999999999999999999 9999999987
Q ss_pred hcccccccccceeeecCceeEEEecCCCcEEEEEcCCCccCCCHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCCCC
Q 024644 140 KQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESKISAVCERVLERCLAPSTAGG 219 (265)
Q Consensus 140 k~~~~~~~~~~~v~~~P~i~~~~l~~~d~~liLaSDGlwd~ls~~ei~~~v~~~~~~~~~~~~~a~~l~~~a~~~~~~~~ 219 (265)
...|++....+.++ +|||||||||||.+++++|.++++. ...++.+++.|++.|+. +
T Consensus 182 -------------~~~p~~~~~~~~~~-d~llL~SDGl~d~v~~~~i~~il~~----~~~~~~~~~~li~~a~~-----~ 238 (262)
T COG0631 182 -------------LLEPDITELELEPG-DFLLLCSDGLWDVVSDDEIVDILKN----SETPQEAADKLIELALE-----G 238 (262)
T ss_pred -------------ccceeEEEEEcCCC-CEEEEECCCCccCcCHHHHHHHHhc----CCCHHHHHHHHHHHHHh-----c
Confidence 48999999999888 6999999999999999999999986 46899999999999999 7
Q ss_pred CCCCCceEEEEEecCCC
Q 024644 220 EGCDNMTMIIVQFKKPI 236 (265)
Q Consensus 220 ~~~DNiTvivv~~~~~~ 236 (265)
++.||+|||+|++....
T Consensus 239 g~~DNiT~ilv~~~~~~ 255 (262)
T COG0631 239 GGPDNITVVLVRLNGEG 255 (262)
T ss_pred CCCCceEEEEEEeeccc
Confidence 99999999999998654
No 8
>KOG0700 consensus Protein phosphatase 2C/pyruvate dehydrogenase (lipoamide) phosphatase [Signal transduction mechanisms]
Probab=99.97 E-value=1.7e-32 Score=246.77 Aligned_cols=189 Identities=28% Similarity=0.401 Sum_probs=155.4
Q ss_pred cchhhhhhhcCCCCCCCCCCCCCcccccCCCCCCCCCCCcceeEEEEEECCeEEEEEEccccEEEEE---CC---eeeec
Q 024644 24 FTGMIEGLIWSPRGGDSNDQPNDWAFEEGPHSDFAGPTSGSTACVAIIRNNHLIVANAGDSRCVISR---KG---QAYNL 97 (265)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GtTa~v~li~~~~l~ianvGDSR~~l~r---~g---~~~~L 97 (265)
.....+++..||.+.+.+...+. .........-+.+|+|++|.++.++.+||||+||||++|.+ +| .++||
T Consensus 166 ~~~v~~al~~Af~~tee~fl~~v---~~~~~~~p~lA~~GSC~Lv~~i~~~~LyVaN~GDSRAVLG~~~~~~~~~~A~qL 242 (390)
T KOG0700|consen 166 HGDVLEALSKAFEATEEDFLEMV---DKQLQENPELALVGSCCLVGLIKGGDLYVANVGDSRAVLGVVENNGSWLVAVQL 242 (390)
T ss_pred chhHHHHHHHHHHHHHHHHHHHH---HHhhccchhhhhhcceEEEEEEeCCeEEEEecCcchhhhceecCCCCeEEEEec
Confidence 45677888888888777654221 11112223345699999999999999999999999999965 33 57999
Q ss_pred CCCCCCChHHHHHHHHhcCc----eEe--eccccCcccccccccchhhhccccc------------ccccceeeecCcee
Q 024644 98 SRDHKPDLEAEKERILKAGG----FIH--AGRVNGSLNLARAIGDMEFKQNKFL------------SAEKQIVTANPDIN 159 (265)
Q Consensus 98 T~DH~~~~~~e~~ri~~~g~----~v~--~~r~~g~l~ltralGd~~~k~~~~~------------~~~~~~v~~~P~i~ 159 (265)
|.||+..++.|++||...+. .+. +.|+.|.|.+||||||..||+.... ....|+++++|.|+
T Consensus 243 S~dHn~~ne~Ev~Rir~eHPdd~~~vv~~~~RvkG~L~vsRAfGd~~lK~~~~n~e~l~~~fr~~~~~t~PyltaeP~i~ 322 (390)
T KOG0700|consen 243 STDHNASNEDEVRRIRSEHPDDPHIVVNKHWRVKGILQVSRAFGDGYLKWPEFNQEPLLEKFRIPYIGTPPYLTAEPSIT 322 (390)
T ss_pred ChhhccccHHHHHHHHHhCCCCcceEeeccceeeEEEEeeeeccceeecchhhccchhHhhcCCCCCCCCCceeccceEE
Confidence 99999999999999999876 233 4699999999999999999988765 24688999999999
Q ss_pred EEEecCCCcEEEEEcCCCccCCCHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCC
Q 024644 160 SVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESKISAVCERVLERCLAPS 215 (265)
Q Consensus 160 ~~~l~~~d~~liLaSDGlwd~ls~~ei~~~v~~~~~~~~~~~~~a~~l~~~a~~~~ 215 (265)
.++|.+.|+||||||||||++|+++|++++|.+++.....-+.+|+.|+..|+...
T Consensus 323 ~HrL~p~DkFLIlASDGLwE~lsNeeaV~lV~~~i~~~~pd~~~A~hLIr~aL~~a 378 (390)
T KOG0700|consen 323 HHKLTPNDKFLILASDGLWEYLSNEEAVSLVHEFISGKFPDGNPATHLIRHALGRA 378 (390)
T ss_pred EEEcCCCCeEEEEeccchhhhcChHHHHHHHHHhhccCCCCCCHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999976654455668888888888743
No 9
>smart00332 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain. The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=99.96 E-value=1.2e-28 Score=214.96 Aligned_cols=156 Identities=49% Similarity=0.802 Sum_probs=139.5
Q ss_pred CCCcceeEEEEEECCeEEEEEEccccEEEEECCeeeecCCCCCCChHHHHHHHHhcCceEeeccccCcccccccccchhh
Q 024644 60 PTSGSTACVAIIRNNHLIVANAGDSRCVISRKGQAYNLSRDHKPDLEAEKERILKAGGFIHAGRVNGSLNLARAIGDMEF 139 (265)
Q Consensus 60 ~~~GtTa~v~li~~~~l~ianvGDSR~~l~r~g~~~~LT~DH~~~~~~e~~ri~~~g~~v~~~r~~g~l~ltralGd~~~ 139 (265)
..+|||++++++..+++|++|+||||+|++|++++.+||.||++.++.+..||...++.+...+.++...+||++|+..+
T Consensus 100 ~~~gtT~~~~~~~~~~l~~~~vGDsr~y~~~~~~~~~lt~dh~~~~~~~~~~i~~~~~~~~~~~~~~~~~lt~~~g~~~~ 179 (255)
T smart00332 100 AGSGSTAVVALISGNKLYVANVGDSRAVLCRNGKAVQLTEDHKPSNEDERARIEAAGGFVINGRVNGVLALSRAIGDFFL 179 (255)
T ss_pred CCCCccEEEEEEECCEEEEEeccCceEEEEeCCceeEcCCCCCCcCHHHHHHHHHcCCEEECCeECCeEecccccCCHhh
Confidence 35899999999999999999999999999999999999999999999999999999998887777777899999999887
Q ss_pred hcccccccccceeeecCceeEEEecCCCcEEEEEcCCCccCCCHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCCCC
Q 024644 140 KQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESKISAVCERVLERCLAPSTAGG 219 (265)
Q Consensus 140 k~~~~~~~~~~~v~~~P~i~~~~l~~~d~~liLaSDGlwd~ls~~ei~~~v~~~~~~~~~~~~~a~~l~~~a~~~~~~~~ 219 (265)
| +.+.+.|++...++...+++|||||||||++++.+++.+++.+.... .++..+|+.|++.|.. +
T Consensus 180 ~---------~~i~~~p~~~~~~~~~~~d~ill~SDGv~~~l~~~~i~~~~~~~~~~-~~~~~~~~~l~~~a~~-----~ 244 (255)
T smart00332 180 K---------PYVSAEPDVTVVELTEKDDFLILASDGLWDVLSNQEVVDIVRKHLSK-SDPEEAAKRLIDLALA-----R 244 (255)
T ss_pred c---------CCeEeeeEEEEEEecCCCcEEEEECCccccCCCHHHHHHHHHHHhhc-CCHHHHHHHHHHHHHH-----c
Confidence 6 44689999999997445569999999999999999999999886332 3689999999999999 6
Q ss_pred CCCCCceEEEE
Q 024644 220 EGCDNMTMIIV 230 (265)
Q Consensus 220 ~~~DNiTvivv 230 (265)
+..||+|||||
T Consensus 245 ~~~Dn~T~ivv 255 (255)
T smart00332 245 GSKDNITVIVV 255 (255)
T ss_pred CCCCCeEEEEC
Confidence 88999999985
No 10
>cd00143 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=99.96 E-value=4.6e-28 Score=210.51 Aligned_cols=158 Identities=45% Similarity=0.782 Sum_probs=138.5
Q ss_pred CCCcceeEEEEEECCeEEEEEEccccEEEEECCeeeecCCCCCCChHHHHHHHHhcCceEeeccccCcccccccccchhh
Q 024644 60 PTSGSTACVAIIRNNHLIVANAGDSRCVISRKGQAYNLSRDHKPDLEAEKERILKAGGFIHAGRVNGSLNLARAIGDMEF 139 (265)
Q Consensus 60 ~~~GtTa~v~li~~~~l~ianvGDSR~~l~r~g~~~~LT~DH~~~~~~e~~ri~~~g~~v~~~r~~g~l~ltralGd~~~ 139 (265)
..+|||++++++.+++++++|+||||+|+++++++.++|.||++.++.++.|+...++.....+.++...+||+||+..+
T Consensus 97 ~~~gtT~~~~~~~~~~l~~~~vGDsr~~~~~~~~~~~lt~dh~~~~~~~~~~i~~~~~~~~~~~~~~~~~~t~~lG~~~~ 176 (254)
T cd00143 97 ARSGTTAVVALIRGNKLYVANVGDSRAVLCRNGEAVQLTKDHKPVNEEERERIEKAGGRVSNGRVPGVLAVTRALGDFDL 176 (254)
T ss_pred CCCCCcEEEEEEECCEEEEEEecCcEEEEEcCCceeEcCCCCCCcChHHHHHHHHcCCcEEeCEEcCceeeccccCCccc
Confidence 35899999999999999999999999999999999999999999999999999999998655555566699999999987
Q ss_pred hcccccccccceeeecCceeEEEecCCCcEEEEEcCCCccCCCHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCCCC
Q 024644 140 KQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESKISAVCERVLERCLAPSTAGG 219 (265)
Q Consensus 140 k~~~~~~~~~~~v~~~P~i~~~~l~~~d~~liLaSDGlwd~ls~~ei~~~v~~~~~~~~~~~~~a~~l~~~a~~~~~~~~ 219 (265)
| +.+.+.|++....+.+.+++|||||||||++++.++|.+++...... .+++.+|+.|++.|.. .
T Consensus 177 ~---------~~~~~~~~~~~~~l~~~~d~ill~SDG~~~~l~~~~i~~~~~~~~~~-~~~~~~a~~l~~~a~~-----~ 241 (254)
T cd00143 177 K---------PGVSAEPDVTVVKLTEDDDFLILASDGLWDVLSNQEAVDIVRSELAK-EDLQEAAQELVDLALR-----R 241 (254)
T ss_pred c---------CCEEcCCeEEEEEeCCCCcEEEEECCCCeeccChHHHHHHHHHHhcc-cCHHHHHHHHHHHHHh-----C
Confidence 6 23488999999999445558999999999999999999999885211 2689999999999999 6
Q ss_pred CCCCCceEEEEEe
Q 024644 220 EGCDNMTMIIVQF 232 (265)
Q Consensus 220 ~~~DNiTvivv~~ 232 (265)
++.||+|||+++|
T Consensus 242 ~~~Dn~t~i~~~~ 254 (254)
T cd00143 242 GSHDNITVVVVRL 254 (254)
T ss_pred CCCCCEEEEEEeC
Confidence 7899999999975
No 11
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=99.96 E-value=1.8e-28 Score=237.50 Aligned_cols=156 Identities=24% Similarity=0.344 Sum_probs=119.9
Q ss_pred CCCcceeEEEEEECCeEEEEEEccccEEEE-ECCeeeecCCCCCCChHHHHHHHHhcCceEeeccccCcccccccccchh
Q 024644 60 PTSGSTACVAIIRNNHLIVANAGDSRCVIS-RKGQAYNLSRDHKPDLEAEKERILKAGGFIHAGRVNGSLNLARAIGDME 138 (265)
Q Consensus 60 ~~~GtTa~v~li~~~~l~ianvGDSR~~l~-r~g~~~~LT~DH~~~~~~e~~ri~~~g~~v~~~r~~g~l~ltralGd~~ 138 (265)
.+||||++++++.++++|++||||||+|++ |+|++.+||+||++.+.+.+.++.. .....+ .+...+|||||+..
T Consensus 482 ~~MGTTlv~alI~~~~l~ianVGDSRaYli~r~g~l~QLT~DHs~~~~lv~~Gi~~-~~a~~~---p~~~~LTrALG~~~ 557 (645)
T PRK14559 482 GRMGTTLVMALVQDTQVAVAHVGDSRLYRVTRKGGLEQLTVDHEVGQREIQRGVEP-QIAYAR---PDAYQLTQALGPRD 557 (645)
T ss_pred CCCCceeeeEEEECCEEEEEEecCceEEEEecCCeEEEeCCCCCHHHHHHHhCCCH-HHHhcC---cccceeeeccCCCC
Confidence 359999999999999999999999999998 5789999999999987665554321 111112 23448999999865
Q ss_pred hhcccccccccceeeecCceeEEEecCCCcEEEEEcCCCccC-CCHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCC
Q 024644 139 FKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDC-MSSQQLVDFIHEQLHSESKISAVCERVLERCLAPSTA 217 (265)
Q Consensus 139 ~k~~~~~~~~~~~v~~~P~i~~~~l~~~d~~liLaSDGlwd~-ls~~ei~~~v~~~~~~~~~~~~~a~~l~~~a~~~~~~ 217 (265)
.+ ..+|++..+.+.++ ++||||||||||+ +-...+.+.+...+....++..++++|++.|+.
T Consensus 558 ~~------------~l~Pdi~~~~L~~g-D~lLLCSDGL~D~~~ve~~~~~~l~~il~~~~~l~~aa~~Li~~Al~---- 620 (645)
T PRK14559 558 NS------------AIQPDIQFLEIEED-TLLLLCSDGLSDNDLLETHWQTHLLPLLSSSANLDQGLNKLIDLANQ---- 620 (645)
T ss_pred CC------------cccceEEEEEcCCC-CEEEEECCCCCCCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHH----
Confidence 33 46899999999765 5899999999994 233333333444444456899999999999998
Q ss_pred CCCCCCCceEEEEEecCCCC
Q 024644 218 GGEGCDNMTMIIVQFKKPIQ 237 (265)
Q Consensus 218 ~~~~~DNiTvivv~~~~~~~ 237 (265)
+++.||+|||||+++..+.
T Consensus 621 -~gg~DNITvIvV~l~~~p~ 639 (645)
T PRK14559 621 -YNGHDNITAILVRLKVRPQ 639 (645)
T ss_pred -cCCCCcEEEEEEEeccCCC
Confidence 7899999999999985443
No 12
>KOG1323 consensus Serine/threonine phosphatase [Signal transduction mechanisms]
Probab=99.93 E-value=7.5e-26 Score=198.58 Aligned_cols=198 Identities=24% Similarity=0.381 Sum_probs=154.1
Q ss_pred hhhhhcCCCCCCCCCCCCCcccccCCCCCCCCCCCcceeEEEEEECCeEEEEEEccccEEEEECCeeeecCCCCCCChHH
Q 024644 28 IEGLIWSPRGGDSNDQPNDWAFEEGPHSDFAGPTSGSTACVAIIRNNHLIVANAGDSRCVISRKGQAYNLSRDHKPDLEA 107 (265)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GtTa~v~li~~~~l~ianvGDSR~~l~r~g~~~~LT~DH~~~~~~ 107 (265)
..|+..+|+..|+.+..+. ......+|||+.+++..-+++|+||+||||++++|++++++||.+.+|. .
T Consensus 221 iGAlEsAFqemDeqiarer---------~~~~~~GGCtalvvi~llGKlYvaNAGDsRAIlVrndeirplS~efTPe--t 289 (493)
T KOG1323|consen 221 IGALESAFQEMDEQIARER---------QVWRLPGGCTALVVIVLLGKLYVANAGDSRAILVRNDEIRPLSKEFTPE--T 289 (493)
T ss_pred HHHHHHHHHHHHHHHHHHH---------HhhcCCCCceEEEeeeeccceEEccCCCceEEEEecCCeeecccccCcH--H
Confidence 4566677777776654221 1112348999999999999999999999999999999999999999996 6
Q ss_pred HHHHHHhcC---------ceEe----------------------------------------------eccccCcccccc
Q 024644 108 EKERILKAG---------GFIH----------------------------------------------AGRVNGSLNLAR 132 (265)
Q Consensus 108 e~~ri~~~g---------~~v~----------------------------------------------~~r~~g~l~ltr 132 (265)
||+|++.-+ .+.. ..|+-+.+.+||
T Consensus 290 ERqRlQ~Laf~~PeLlgneFtrLEfprRl~~~dLgqrvLyRD~~MtGWayKtve~~DLr~pLI~gegrkaRll~TigVsR 369 (493)
T KOG1323|consen 290 ERQRLQELAFRNPELLGNEFTRLEFPRRLTIKDLGQRVLYRDWNMTGWAYKTVEEEDLRFPLISGEGRKARLLATIGVSR 369 (493)
T ss_pred HHHHHHHHhhcChHhhcccccceecccccChhhhcceeeeeccccccceeehhhhhcCCcceecccchhhhhhhhheecc
Confidence 788877642 1100 123334678999
Q ss_pred cccchhhhcccccccccceeeecCceeEEEec----CCCcEEEEEcCCCccCCCHHHHHHHHHHHhcCCC--c---HHHH
Q 024644 133 AIGDMEFKQNKFLSAEKQIVTANPDINSVELC----DDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSES--K---ISAV 203 (265)
Q Consensus 133 alGd~~~k~~~~~~~~~~~v~~~P~i~~~~l~----~~d~~liLaSDGlwd~ls~~ei~~~v~~~~~~~~--~---~~~~ 203 (265)
.|||.++|.....-.-+|++++.|+|+..++. ..|+++||||||+||+++++++..+|+..+.... + ...+
T Consensus 370 GlGDH~Lkv~dsnl~iKPFLssvPeV~V~dl~q~e~~~DdVvilatDGLWDVlSneeva~~Vrs~L~~~dp~Dp~RYt~a 449 (493)
T KOG1323|consen 370 GLGDHHLKVVDSNLSIKPFLSSVPEVRVYDLRQYEHLTDDVVILATDGLWDVLSNEEVALIVRSFLPSTDPADPSRYTQA 449 (493)
T ss_pred ccCcceeeeecCCcccchhhhcCCeeEEEehhhhccCCCcEEEEecCchhhhcccHHHHHHHHHhcCCCCCCChhHHHHH
Confidence 99999999888777788999999999999987 3577999999999999999999999999976543 2 3457
Q ss_pred HHHHHHHHhcC-----CC---CCCCCCCCceEEEEEecCCC
Q 024644 204 CERVLERCLAP-----ST---AGGEGCDNMTMIIVQFKKPI 236 (265)
Q Consensus 204 a~~l~~~a~~~-----~~---~~~~~~DNiTvivv~~~~~~ 236 (265)
|+.|+..|... |. .+-++.|||||.||.+....
T Consensus 450 aqdlva~arg~~k~rgWr~~n~~lgSgDDIsVfVIPL~~~~ 490 (493)
T KOG1323|consen 450 AQDLVAAARGQQKDRGWRMNNGGLGSGDDISVFVIPLKYCA 490 (493)
T ss_pred HHHHHHHhcCccCCCceeccCCCcCCCCceEEEEEeccCCC
Confidence 77788777652 22 13567899999999998653
No 13
>KOG1379 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=99.79 E-value=2.2e-18 Score=151.30 Aligned_cols=142 Identities=20% Similarity=0.386 Sum_probs=105.9
Q ss_pred CcceeEEEEEE--CCeEEEEEEccccEEEEECCeeeecCCCCCCChHHHHHHHHhcCceEeeccccCcccccccccchhh
Q 024644 62 SGSTACVAIIR--NNHLIVANAGDSRCVISRKGQAYNLSRDHKPDLEAEKERILKAGGFIHAGRVNGSLNLARAIGDMEF 139 (265)
Q Consensus 62 ~GtTa~v~li~--~~~l~ianvGDSR~~l~r~g~~~~LT~DH~~~~~~e~~ri~~~g~~v~~~r~~g~l~ltralGd~~~ 139 (265)
++||||++++. +++||+||+|||.+.++|+|+++.-|..+......-.+ +..+..+ ...+++|.
T Consensus 167 GSSTAcI~~l~~~~~~Lh~aNLGDSGF~VvR~G~vv~~S~~Q~H~FN~PyQ--------Ls~~p~~----~~~~~~d~-- 232 (330)
T KOG1379|consen 167 GSSTACILALDRENGKLHTANLGDSGFLVVREGKVVFRSPEQQHYFNTPYQ--------LSSPPEG----YSSYISDV-- 232 (330)
T ss_pred CcceeeeeeeecCCCeEEEeeccCcceEEEECCEEEEcCchheeccCCcee--------eccCCcc----ccccccCC--
Confidence 88999999999 88999999999999999999999998876543111000 0000000 12223332
Q ss_pred hcccccccccceeeecCceeEEEecCCCcEEEEEcCCCccCCCHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHhcC----
Q 024644 140 KQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLH-SESKISAVCERVLERCLAP---- 214 (265)
Q Consensus 140 k~~~~~~~~~~~v~~~P~i~~~~l~~~d~~liLaSDGlwd~ls~~ei~~~v~~~~~-~~~~~~~~a~~l~~~a~~~---- 214 (265)
--..++..+.+.++| +||||||||||+|.+++|.+++..... ....++.+|++|++.|...
T Consensus 233 -------------p~~ad~~~~~v~~GD-vIilATDGlfDNl~e~~Il~il~~~~~~~~~~lq~~A~~ia~~Ar~ls~d~ 298 (330)
T KOG1379|consen 233 -------------PDSADVTSFDVQKGD-VIILATDGLFDNLPEKEILSILKGLDARGNLDLQVTAQKIAEKARELSRDP 298 (330)
T ss_pred -------------ccccceEEEeccCCC-EEEEecccccccccHHHHHHHHHHhhccccccHHHHHHHHHHHHHHhccCc
Confidence 234567888887777 899999999999999999999988766 6778999999999988761
Q ss_pred -------------C-CCCCCCCCCceEEEEE
Q 024644 215 -------------S-TAGGEGCDNMTMIIVQ 231 (265)
Q Consensus 215 -------------~-~~~~~~~DNiTvivv~ 231 (265)
. ...+|..|+|||||..
T Consensus 299 ~~~SPFA~~Ar~~g~~~~gGK~DdITvvls~ 329 (330)
T KOG1379|consen 299 KFQSPFAQAAREHGFKAYGGKPDDITVVLSS 329 (330)
T ss_pred CcCChHHHHHHHhCcccCCCCcccEEEEEec
Confidence 1 1125578999999975
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.69 E-value=7.7e-17 Score=157.84 Aligned_cols=146 Identities=23% Similarity=0.411 Sum_probs=132.4
Q ss_pred CeEEEEEEccccEEEEECCeeeecCCCC-CCChHHHHHHHHhcCceEe-eccccCcccccccccchhhhcccccccccce
Q 024644 74 NHLIVANAGDSRCVISRKGQAYNLSRDH-KPDLEAEKERILKAGGFIH-AGRVNGSLNLARAIGDMEFKQNKFLSAEKQI 151 (265)
Q Consensus 74 ~~l~ianvGDSR~~l~r~g~~~~LT~DH-~~~~~~e~~ri~~~g~~v~-~~r~~g~l~ltralGd~~~k~~~~~~~~~~~ 151 (265)
.++.+||+|+|.++++++|+-.++|+-. -..+++|.+||...+|++. .++++|....||++|.+... |.
T Consensus 629 ~~l~~Anvg~c~avls~ng~~~p~t~~~~~~v~~eE~~RI~~~~g~i~ed~k~ngvt~~tR~iG~~~l~---------P~ 699 (1081)
T KOG0618|consen 629 KTLFAANVGTCMAVLSRNGKPLPTTRSPMLEVDREEYKRIVDSKGFITEDNKLNGVTSSTRAIGPFSLF---------PH 699 (1081)
T ss_pred hhhhHhhhccchhhhhhcCCcCcccccccccCCHHHHHHHHHhcCeecCCCeeeceeeeeeeccccccc---------cc
Confidence 4689999999999999999998888876 3448999999999999999 88999999999999988744 45
Q ss_pred eeecCceeEEEecCCCcEEEEEcCCCccCCCHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCCCCCCCCCceEEEEE
Q 024644 152 VTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESKISAVCERVLERCLAPSTAGGEGCDNMTMIIVQ 231 (265)
Q Consensus 152 v~~~P~i~~~~l~~~d~~liLaSDGlwd~ls~~ei~~~v~~~~~~~~~~~~~a~~l~~~a~~~~~~~~~~~DNiTvivv~ 231 (265)
|.+.|+|....|++.|+|||+|+-++|++|+-+++++.+++ ..++-.+|++|++.|.+ .|..||++|+||+
T Consensus 700 v~p~Phv~~~~Lt~qdE~LIvgn~~lW~~Lsid~a~~~vRn----~~dpL~AAkKL~d~AqS-----Ygc~~nv~vlVv~ 770 (1081)
T KOG0618|consen 700 VLPDPHVSVVILTEQDEFLIVGNKQLWSVLSIDTAVDAVRN----VEDPLLAAKKLCDLAQS-----YGCAENVSVLVVR 770 (1081)
T ss_pred ccCCCceeeEecccCceEEEEcchHHhhhccHHHHHHHHhc----CCchHHHHHHHHHHHHh-----cccccCeeEEEEE
Confidence 79999999999999999999999999999999999999996 46888999999999999 7899999999999
Q ss_pred ecCCCC
Q 024644 232 FKKPIQ 237 (265)
Q Consensus 232 ~~~~~~ 237 (265)
+.....
T Consensus 771 l~~~~~ 776 (1081)
T KOG0618|consen 771 LNHLEE 776 (1081)
T ss_pred eecchh
Confidence 987544
No 15
>smart00331 PP2C_SIG Sigma factor PP2C-like phosphatases.
Probab=99.43 E-value=1.9e-12 Score=108.54 Aligned_cols=106 Identities=25% Similarity=0.335 Sum_probs=83.9
Q ss_pred CCcceeEEEEE--ECCeEEEEEEccccEEEEE-CCeeeecCCCCCCChHHHHHHHHhcCceEeeccccCcccccccccch
Q 024644 61 TSGSTACVAII--RNNHLIVANAGDSRCVISR-KGQAYNLSRDHKPDLEAEKERILKAGGFIHAGRVNGSLNLARAIGDM 137 (265)
Q Consensus 61 ~~GtTa~v~li--~~~~l~ianvGDSR~~l~r-~g~~~~LT~DH~~~~~~e~~ri~~~g~~v~~~r~~g~l~ltralGd~ 137 (265)
.+|||++++++ ..++++++|+||+|+|+++ ++...+++.+ .++.+|..
T Consensus 84 ~~~~T~~~~~id~~~~~l~~~~~Gd~~~~~~~~~~~~~~~~~~-----------------------------~~~~lG~~ 134 (193)
T smart00331 84 GMFATLFLALYDFAGGTLSYANAGHSPPYLLRADGGLVEDLDD-----------------------------LGAPLGLE 134 (193)
T ss_pred CcEEEEEEEEEECCCCEEEEEeCCCCceEEEECCCCeEEEcCC-----------------------------CCceeeeC
Confidence 48999999998 5789999999999999999 6666666554 23456654
Q ss_pred hhhcccccccccceeeecCceeEEEecCCCcEEEEEcCCCccCCCHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh
Q 024644 138 EFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESKISAVCERVLERCL 212 (265)
Q Consensus 138 ~~k~~~~~~~~~~~v~~~P~i~~~~l~~~d~~liLaSDGlwd~ls~~ei~~~v~~~~~~~~~~~~~a~~l~~~a~ 212 (265)
. ...+++..+.+.++| .|+|+|||||+.++.+++.+++.+.. ..+++.+++++++.++
T Consensus 135 ~--------------~~~~~~~~~~l~~gd-~l~l~TDGl~e~~~~~~l~~~l~~~~--~~~~~~~~~~i~~~~~ 192 (193)
T smart00331 135 P--------------DVEVDVRELTLEPGD-LLLLYTDGLTEARNPERLEELLEELL--GSPPAEIAQRILEELL 192 (193)
T ss_pred C--------------CCcceeEEEeeCCCC-EEEEECCCccccCChHHHHHHHHHhc--CCCHHHHHHHHHHHHh
Confidence 3 234667778887776 78899999999999999999998863 3568889998887754
No 16
>PF13672 PP2C_2: Protein phosphatase 2C; PDB: 2JFT_A 2JFS_A 2V06_A 2JFR_A 2J86_A 2J82_A 2Y09_A 2XZV_A 2CM1_A 1TXO_B ....
Probab=99.31 E-value=3.3e-12 Score=108.66 Aligned_cols=100 Identities=26% Similarity=0.490 Sum_probs=58.0
Q ss_pred CCCcceeEEEEEECCeEEEEEEccccEEE-EECCeeeecCCCCCCChHHHHHHHHhcCceEeeccccCcccccccccchh
Q 024644 60 PTSGSTACVAIIRNNHLIVANAGDSRCVI-SRKGQAYNLSRDHKPDLEAEKERILKAGGFIHAGRVNGSLNLARAIGDME 138 (265)
Q Consensus 60 ~~~GtTa~v~li~~~~l~ianvGDSR~~l-~r~g~~~~LT~DH~~~~~~e~~ri~~~g~~v~~~r~~g~l~ltralGd~~ 138 (265)
..++||++++++.++.++++|+||||+|+ .++|++..++.+|+... . ..++.+....
T Consensus 95 ~~~~tTl~~~v~~~~~~~~~~iGD~~i~~~~~~g~~~~l~~~~~~~~----~------------------~~~~~~~~~~ 152 (212)
T PF13672_consen 95 RDYGTTLLALVIDPDKVYIFNIGDSRIYVIRRNGEIQQLTDDHSGEY----P------------------NQTRSLTGDD 152 (212)
T ss_dssp TT-EE-EEEEEEETTEEEEEEESS-EEEEEEETTEEEE-S---BHHH----H------------------HCTTSCCHHC
T ss_pred cccCceEEEEEEECCEEEEEEECCCeEEEEECCCEEEEcCCCccchh----h------------------hhhhccCccc
Confidence 35899999999999999999999999965 67999999999997221 1 1133333321
Q ss_pred hhcccccccccceeeecCceeEEEecCCCcEEEEEcCCCccCCCHHH-HHHHHHHHhc
Q 024644 139 FKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQ-LVDFIHEQLH 195 (265)
Q Consensus 139 ~k~~~~~~~~~~~v~~~P~i~~~~l~~~d~~liLaSDGlwd~ls~~e-i~~~v~~~~~ 195 (265)
. ....++..+++.+++ .|+|||||||+.+...+ +..++.+.+.
T Consensus 153 ~-------------~~~~~~~~~~~~~~d-~ilL~SDG~~~~l~~~~~~~~~l~~~~~ 196 (212)
T PF13672_consen 153 P-------------EPDVQYGSIPLEEGD-VILLCSDGVWDNLRSYEDLEQFLKDLWN 196 (212)
T ss_dssp C-------------CTETEEEEEE--TT--EEEEE-HHHHTTS-HHHHHHHH------
T ss_pred c-------------ccCCeEEEEEcCCCC-EEEEECcCccccCCCHHHHHHHhhhccc
Confidence 0 122255556665655 78899999999998655 6677766543
No 17
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=99.22 E-value=1.6e-10 Score=115.67 Aligned_cols=123 Identities=20% Similarity=0.330 Sum_probs=92.6
Q ss_pred CCcceeEEEEEE--CCeEEEEEEccccEEEEECCeeeecCCCCCCChHHHHHHHHhcCceEeeccccCcccccccccchh
Q 024644 61 TSGSTACVAIIR--NNHLIVANAGDSRCVISRKGQAYNLSRDHKPDLEAEKERILKAGGFIHAGRVNGSLNLARAIGDME 138 (265)
Q Consensus 61 ~~GtTa~v~li~--~~~l~ianvGDSR~~l~r~g~~~~LT~DH~~~~~~e~~ri~~~g~~v~~~r~~g~l~ltralGd~~ 138 (265)
.+.+|+.+++++ .+++.++|+|+++.|+.|++++.+++..+-| +|-..
T Consensus 634 ~~faTl~l~~IDl~~g~~~~~~aG~~p~~i~r~~~v~~i~s~~lP------------------------------lGil~ 683 (764)
T TIGR02865 634 EKFSTLDLSVIDLYTGQAEFVKVGAVPSFIKRGAKVEVIRSSNLP------------------------------IGILD 683 (764)
T ss_pred CeEEEEEEEEEECCCCeEEEEecCCCceEEEECCEEEEecCCCce------------------------------eEecc
Confidence 378999999996 6899999999999999999988888643322 33221
Q ss_pred hhcccccccccceeeecCceeEEEecCCCcEEEEEcCCCccCCCHHH-----HHHHHHHHhcCCCcHHHHHHHHHHHHhc
Q 024644 139 FKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQ-----LVDFIHEQLHSESKISAVCERVLERCLA 213 (265)
Q Consensus 139 ~k~~~~~~~~~~~v~~~P~i~~~~l~~~d~~liLaSDGlwd~ls~~e-----i~~~v~~~~~~~~~~~~~a~~l~~~a~~ 213 (265)
..++++...++.++| +|||+||||||..++.+ +.+++.+. ...+++++++.|++.++.
T Consensus 684 --------------~~~~~~~~~~L~~GD-~Lll~SDGv~E~~~~~~~~~~~l~~~l~~~--~~~~p~ela~~Il~~a~~ 746 (764)
T TIGR02865 684 --------------EVDVELVRKKLKNGD-LIVMVSDGVLEGEKEVEGKVLWLVRKLKET--NTNDPEEIAEYLLEKAKE 746 (764)
T ss_pred --------------CCccceEEEEeCCCC-EEEEECCCCCcCCcccccHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHH
Confidence 235666777887776 79999999999886533 55555542 245799999999999987
Q ss_pred CCCCCCCCCCCceEEEEEe
Q 024644 214 PSTAGGEGCDNMTMIIVQF 232 (265)
Q Consensus 214 ~~~~~~~~~DNiTvivv~~ 232 (265)
... +...||+|++++++
T Consensus 747 ~~~--~~~~DD~Tvlvirv 763 (764)
T TIGR02865 747 LRS--GKIKDDMTVIVAKV 763 (764)
T ss_pred hcC--CCCCCCeEEEEEEe
Confidence 431 23589999999986
No 18
>PF07228 SpoIIE: Stage II sporulation protein E (SpoIIE); InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 3KE6_B 3ZT9_A 3RNR_A 3EQ2_A 3F7A_B 3F79_A 3ES2_B 3PU9_B 3T91_B 3T9Q_B ....
Probab=99.18 E-value=3.7e-10 Score=94.37 Aligned_cols=124 Identities=23% Similarity=0.378 Sum_probs=83.2
Q ss_pred CCcceeEEEEEE--CCeEEEEEEccccEEEEEC--CeeeecCCCCCCChHHHHHHHHhcCceEeeccccCcccccccccc
Q 024644 61 TSGSTACVAIIR--NNHLIVANAGDSRCVISRK--GQAYNLSRDHKPDLEAEKERILKAGGFIHAGRVNGSLNLARAIGD 136 (265)
Q Consensus 61 ~~GtTa~v~li~--~~~l~ianvGDSR~~l~r~--g~~~~LT~DH~~~~~~e~~ri~~~g~~v~~~r~~g~l~ltralGd 136 (265)
...+|++++.++ .++++++|+|+++++++++ +....+.....+ +|-
T Consensus 59 ~~~~t~~~~~~d~~~~~l~~~~aG~~~~l~~~~~~~~~~~~~~~~~~------------------------------lG~ 108 (193)
T PF07228_consen 59 NRYATACYAIIDPETGTLTYANAGHPPPLLLRPGGREIEQLESEGPP------------------------------LGI 108 (193)
T ss_dssp STTEEEEEEEEETTTTEEEEEEESSSEEEEEETTCTEEEEETCSSBB------------------------------CSS
T ss_pred cccceEEEEEecccceEEEEeCCCCCCEEEEeccccceeecccCccc------------------------------eee
Confidence 377899988887 5689999999999999998 334444321111 443
Q ss_pred hhhhcccccccccceeeecCceeEEEecCCCcEEEEEcCCCccCCCHH-------HHHHHHHHHhcCCCcHHHHHHHHHH
Q 024644 137 MEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQ-------QLVDFIHEQLHSESKISAVCERVLE 209 (265)
Q Consensus 137 ~~~k~~~~~~~~~~~v~~~P~i~~~~l~~~d~~liLaSDGlwd~ls~~-------ei~~~v~~~~~~~~~~~~~a~~l~~ 209 (265)
.. ...+....+.+.++| .|+|+||||+|....+ .+.+++.+. ...+++.+++.+++
T Consensus 109 ~~--------------~~~~~~~~~~l~~gd-~l~l~TDGl~e~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~l~~ 171 (193)
T PF07228_consen 109 FE--------------DIDYQEQEIQLEPGD-RLLLYTDGLFEALNEDGEFFGEERLLELLDEN--RGLSPQEIIDALLE 171 (193)
T ss_dssp SC--------------TTCEEEEEEE--TTE-EEEEECHHHCTTTCHHCHHCCCHHHHHHHHCH--TTS-HHHHHHHHHH
T ss_pred ec--------------cccccceEEEecccc-EEEEeCCChhhccCCccchhHHHHHHHHHhhc--cCCCHHHHHHHHHH
Confidence 22 123345566676666 7999999999998544 334555543 34679999999998
Q ss_pred HHhcCCCCCCCCCCCceEEEEEec
Q 024644 210 RCLAPSTAGGEGCDNMTMIIVQFK 233 (265)
Q Consensus 210 ~a~~~~~~~~~~~DNiTvivv~~~ 233 (265)
.+.. .......||+||++++++
T Consensus 172 ~~~~--~~~~~~~DD~tvl~~~~~ 193 (193)
T PF07228_consen 172 AIDR--FGKGPLRDDITVLVIRRQ 193 (193)
T ss_dssp HHHH--HTTSSTSS-EEEEEEEE-
T ss_pred HHHH--hcCCCCCCceEEEEEEEC
Confidence 8877 122567899999999874
No 19
>COG2208 RsbU Serine phosphatase RsbU, regulator of sigma subunit [Signal transduction mechanisms / Transcription]
Probab=98.01 E-value=0.00013 Score=67.60 Aligned_cols=124 Identities=19% Similarity=0.271 Sum_probs=92.4
Q ss_pred CcceeEEEEEE--CCeEEEEEEccccEEEEECCee---eecCCCCCCChHHHHHHHHhcCceEeeccccCcccccccccc
Q 024644 62 SGSTACVAIIR--NNHLIVANAGDSRCVISRKGQA---YNLSRDHKPDLEAEKERILKAGGFIHAGRVNGSLNLARAIGD 136 (265)
Q Consensus 62 ~GtTa~v~li~--~~~l~ianvGDSR~~l~r~g~~---~~LT~DH~~~~~~e~~ri~~~g~~v~~~r~~g~l~ltralGd 136 (265)
+=+|+...+++ .+.+.++|+|---.++++.+.. ..++ .....+|.
T Consensus 231 ~f~T~~~~~~d~~~~~l~y~~aGH~p~~i~~~~~~~~~~~l~------------------------------~~g~piG~ 280 (367)
T COG2208 231 MFVTLFLGVYDLDSGELTYSNAGHEPALILSADGEIEVEDLT------------------------------ALGLPIGL 280 (367)
T ss_pred cEEEEEEEEEeccCCEEEEeeCCCCCeeEEEcCCCceeEEcc------------------------------CCCceeee
Confidence 67888888887 6789999999999999986542 3332 45566776
Q ss_pred hhhhcccccccccceeeecCceeEEEecCCCcEEEEEcCCCcc-------CCCHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 024644 137 MEFKQNKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWD-------CMSSQQLVDFIHEQLHSESKISAVCERVLE 209 (265)
Q Consensus 137 ~~~k~~~~~~~~~~~v~~~P~i~~~~l~~~d~~liLaSDGlwd-------~ls~~ei~~~v~~~~~~~~~~~~~a~~l~~ 209 (265)
.. -..+.+....+.++| .|++.||||.+ .+..+...+++.. ....+++.+++.+++
T Consensus 281 ~~--------------~~~~~~~~~~l~~gd-~lvl~tDGv~Ea~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~~i~~ 343 (367)
T COG2208 281 LP--------------DYQYEVASLQLEPGD-LLVLYTDGVTEARNSDGEFFGLERLLKILGR--LLGQPAEEILEAILE 343 (367)
T ss_pred cC--------------CccchheeEEecCCC-EEEEEcCCeeeeecCCccEecHHHHHHHHHH--HhCCCHHHHHHHHHH
Confidence 55 556677788887855 89999999999 4667777777775 235688899998888
Q ss_pred HHhcCCCCCCCCCCCceEEEEEec
Q 024644 210 RCLAPSTAGGEGCDNMTMIIVQFK 233 (265)
Q Consensus 210 ~a~~~~~~~~~~~DNiTvivv~~~ 233 (265)
...+-.. .....||+|+++++++
T Consensus 344 ~l~~~~~-~~~~~DDiTll~lk~~ 366 (367)
T COG2208 344 SLEELQG-DQIQDDDITLLVLKVK 366 (367)
T ss_pred HHHHhhC-CccccCceEEEEEEec
Confidence 7776321 1344688999999986
No 20
>COG5518 Bacteriophage capsid portal protein [General function prediction only]
Probab=56.71 E-value=38 Score=31.49 Aligned_cols=136 Identities=16% Similarity=0.136 Sum_probs=76.8
Q ss_pred EEECCeEEEEEEccccEEEEECCeeeecCCCCCCChHHHHHHHHhcCceEeeccccCcccccccccch--------hhhc
Q 024644 70 IIRNNHLIVANAGDSRCVISRKGQAYNLSRDHKPDLEAEKERILKAGGFIHAGRVNGSLNLARAIGDM--------EFKQ 141 (265)
Q Consensus 70 li~~~~l~ianvGDSR~~l~r~g~~~~LT~DH~~~~~~e~~ri~~~g~~v~~~r~~g~l~ltralGd~--------~~k~ 141 (265)
+|+.+++|+-..||.|.|=++.|.-+..+.-..+.++..-..|-+. ..--+|.-| ++....|.. .||+
T Consensus 189 mID~k~v~FkeyGdpr~~d~~~G~yv~~~~le~~ane~ih~kIgs~--~YG~Prwig--~ivslygarkAeeln~~Yfkn 264 (492)
T COG5518 189 MIDLKTVWFKEYGDPRPYDFTTGNYVSMFHLEEPANEDIHQKIGSG--AYGLPRWIG--AIVSLYGARKAEELNRMYFKN 264 (492)
T ss_pred eeccceEEEEecCCCcceeeccCccchhhhhhcchhhhHHHhhccc--ccCchHHHH--HHHHHHhhhhHHHHHHHHHhc
Confidence 4778899999999999999999977766666666555444433211 111111111 122222211 1222
Q ss_pred ccccccccceeeecCceeEEEecCCCcEEEEEcCCCccCCCHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCCCCCC
Q 024644 142 NKFLSAEKQIVTANPDINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESKISAVCERVLERCLAPSTAGGEG 221 (265)
Q Consensus 142 ~~~~~~~~~~v~~~P~i~~~~l~~~d~~liLaSDGlwd~ls~~ei~~~v~~~~~~~~~~~~~a~~l~~~a~~~~~~~~~~ 221 (265)
..+ --++|..+||..+. +-..-++++++.-..+..+-+-|+-.+.......-.+
T Consensus 265 GrH----------------------~paai~~~~g~l~e----~~y~~L~eyMk~~~g~eNa~~flm~e~~G~~~kn~hg 318 (492)
T COG5518 265 GRH----------------------APAAIYMTDGALSE----EDYNNLREYMKSAKGPENARNFLMYEPNGKKIKNAHG 318 (492)
T ss_pred Ccc----------------------CceEEEecccccch----HHHHHHHHHHhhcCCchhhhhheeeccCCeeccccCC
Confidence 211 23788999998754 4444455555545566666555554443322222344
Q ss_pred CCCceEEEEEecCC
Q 024644 222 CDNMTMIIVQFKKP 235 (265)
Q Consensus 222 ~DNiTvivv~~~~~ 235 (265)
..|+|-|-|.+++.
T Consensus 319 d~~i~~vkV~IksL 332 (492)
T COG5518 319 DGNISPVKVQIKSL 332 (492)
T ss_pred CCCcCceeEEeeeH
Confidence 67888888888764
No 21
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=54.28 E-value=36 Score=28.60 Aligned_cols=47 Identities=19% Similarity=0.359 Sum_probs=37.7
Q ss_pred CcEEEEEcCCCc-----------cCCCHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhc
Q 024644 167 DDFVVLACDGIW-----------DCMSSQQLVDFIHEQLHSESKISAVCERVLERCLA 213 (265)
Q Consensus 167 d~~liLaSDGlw-----------d~ls~~ei~~~v~~~~~~~~~~~~~a~~l~~~a~~ 213 (265)
|+.++..|.|+| |+|.++..-+.+.+......-++++|..|++.-..
T Consensus 71 DDTvLFsSp~F~~Gk~~~sPgs~DyLknq~FW~~vn~g~D~~SIPKevA~qLI~MHq~ 128 (237)
T COG3700 71 DDTVLFSSPGFWRGKKYFSPGSEDYLKNQVFWEKVNNGWDEFSIPKEVARQLIDMHQR 128 (237)
T ss_pred CCeeEecccccccCccccCCChHHhhcCHHHHHHHhcCCccccchHHHHHHHHHHHHh
Confidence 446778888887 46778888888888777777899999999998666
No 22
>PF09436 DUF2016: Domain of unknown function (DUF2016); InterPro: IPR018560 This entry represents the N-terminal of proteins that contain a ubiquitin domain.
Probab=48.17 E-value=11 Score=26.47 Aligned_cols=20 Identities=15% Similarity=0.253 Sum_probs=14.2
Q ss_pred ecCCCcEEEEEcCCCccCCC
Q 024644 163 LCDDDDFVVLACDGIWDCMS 182 (265)
Q Consensus 163 l~~~d~~liLaSDGlwd~ls 182 (265)
+...+.-+++|+||+|=.+.
T Consensus 23 l~~~G~Rllva~nGv~lEv~ 42 (72)
T PF09436_consen 23 LERPGHRLLVASNGVFLEVR 42 (72)
T ss_pred cccCCcEEEEecCcEEEEEe
Confidence 34455678899999995443
No 23
>PF05785 CNF1: Rho-activating domain of cytotoxic necrotizing factor; InterPro: IPR008430 This entry represents several bacterial cytotoxic necrotizing factor proteins as well as related dermonecrotic toxin (DNT) from Bordetella species. Cytotoxic necrotizing factor 1 (CNF1) is a toxin whose structure from Escherichia coli revealed a 4-layer alpha/beta/beta/alpha structure containing mixed beta-sheets []. CNF1 is expressed in strains of E. coli causing uropathogenic and neonatal meningitis. CNF1 alters host cell actin cytoskeleton and promotes bacterial invasion of the blood-brain barrier endothelial cells []. CNF1 belongs to a unique group of large cytotoxins that cause constitutive activation of Rho guanosine triphosphatases (GTPases), which are key regulators of the actin cytoskeleton []. Bordetella dermonecrotic toxin (DNT) stimulates the assembly of actin stress fibres and focal adhesions by deamidating or polyaminating Gln63 of the small GTPase Rho. DNT is an A-B toxin composed of an N-terminal receptor-binding (B) domain and a C-terminal enzymatically active (A) domain [].; PDB: 1HZG_A 1HQ0_A.
Probab=42.02 E-value=33 Score=30.59 Aligned_cols=26 Identities=31% Similarity=0.411 Sum_probs=19.0
Q ss_pred CCCCCcceeEEEEEECCeEEEEEEccc
Q 024644 58 AGPTSGSTACVAIIRNNHLIVANAGDS 84 (265)
Q Consensus 58 ~~~~~GtTa~v~li~~~~l~ianvGDS 84 (265)
.|.-+|||.+++ +.++.+|..|+|-+
T Consensus 128 sG~LSGCT~i~A-~K~~~~y~~HtGk~ 153 (281)
T PF05785_consen 128 SGALSGCTMIYA-RKDNYFYAYHTGKS 153 (281)
T ss_dssp ---BSS-EEEEE-EETTEEEEEEEEES
T ss_pred CCccCCCEEEEE-EcCCeEEEEEcCCC
Confidence 455689998876 57899999999987
No 24
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=36.17 E-value=58 Score=17.96 Aligned_cols=21 Identities=24% Similarity=0.455 Sum_probs=16.4
Q ss_pred EEEECCeEEEEEEccccEEEE
Q 024644 69 AIIRNNHLIVANAGDSRCVIS 89 (265)
Q Consensus 69 ~li~~~~l~ianvGDSR~~l~ 89 (265)
++-.++.+||+-.|..|+..+
T Consensus 8 av~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 8 AVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EEETTSEEEEEECCCTEEEEE
T ss_pred EEeCCCCEEEEECCCCEEEEC
Confidence 344788999999999888654
No 25
>COG1539 FolB Dihydroneopterin aldolase [Coenzyme metabolism]
Probab=33.97 E-value=2.2e+02 Score=21.98 Aligned_cols=62 Identities=18% Similarity=0.322 Sum_probs=48.6
Q ss_pred EEcCCCccCCCHHHHHHHHHHHhcCC--CcHHHHHHHHHHHHhcCCCCCCCCCCCceEEEEEecCCCCCCC
Q 024644 172 LACDGIWDCMSSQQLVDFIHEQLHSE--SKISAVCERVLERCLAPSTAGGEGCDNMTMIIVQFKKPIQSTS 240 (265)
Q Consensus 172 LaSDGlwd~ls~~ei~~~v~~~~~~~--~~~~~~a~~l~~~a~~~~~~~~~~~DNiTvivv~~~~~~~~~~ 240 (265)
..||=+-|.+.-.++.+.+.+..... .-++.+|+.+.+..+. ....++.+-|.+.+|....+
T Consensus 43 ~~~Ddl~dtl~Y~~v~~~i~~~v~~~~~~LiE~lA~~ia~~l~~-------~~~~v~~~~v~v~KP~ap~~ 106 (121)
T COG1539 43 AESDDLADTLNYAEVSELIKEIVEGKRFALIETLAEEIADLLLA-------RFPRVELVEVKVTKPKAPIP 106 (121)
T ss_pred cCccchhheecHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHh-------hCCccEEEEEEEECCCCCCC
Confidence 56788889999999999998886543 3578889999888887 23788888888888765544
No 26
>cd00534 DHNA_DHNTPE Dihydroneopterin aldolase (DHNA) and 7,8-dihydroneopterin triphosphate epimerase domain (DHNTPE); these enzymes have been designated folB and folX, respectively. Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is DHNA which catalyses the conversion of 7,8-dihydroneopterin to 6-hydroxymethyl-7,8-dihydropterin in the biosynthetic pathway of tetrahydrofolate. Though it is known that DHNTPE catalyzes the epimerization of dihydroneopterin triphosphate to dihydromonapterin triphosphate, the biological role of this enzyme is still unclear. It is hypothesized that it is not an essential protein since a folX knockout in E. coli has a normal phenoty
Probab=32.90 E-value=1.9e+02 Score=21.79 Aligned_cols=58 Identities=17% Similarity=0.263 Sum_probs=43.4
Q ss_pred EEcCCCccCCCHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHhcCCCCCCCCCCCceEEEEEecCCC
Q 024644 172 LACDGIWDCMSSQQLVDFIHEQLHS--ESKISAVCERVLERCLAPSTAGGEGCDNMTMIIVQFKKPI 236 (265)
Q Consensus 172 LaSDGlwd~ls~~ei~~~v~~~~~~--~~~~~~~a~~l~~~a~~~~~~~~~~~DNiTvivv~~~~~~ 236 (265)
-+||-+-+.++-..+.+.+.+.... ...++.+|+.+.+.++.. .+.+.-+-|++.++.
T Consensus 42 ~~~D~l~~tidY~~l~~~i~~~~~~~~~~llE~La~~ia~~i~~~-------~~~v~~v~v~v~K~~ 101 (118)
T cd00534 42 GESDDLADTLNYAEVAKLIKKIVEGSPFKLIETLAEEIADILLED-------YPKVSAIKVKVEKPN 101 (118)
T ss_pred hccCChhhccCHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHh-------CCCceEEEEEEECCC
Confidence 4688888899999999999887653 347888999999988872 245566666666654
No 27
>TIGR00525 folB dihydroneopterin aldolase. This model describes a bacterial dihydroneopterin aldolase, shown to form homo-octamers in E. coli. The equivalent activity is catalyzed by domains of larger folate biosynthesis proteins in other systems. The closely related parologous enzyme in E. coli, dihydroneopterin triphosphate epimerase, which is also homo-octameric, and dihydroneopterin aldolase domains of larger proteins, score below the trusted cutoff but may score well above the noise cutoff.
Probab=31.28 E-value=2e+02 Score=21.56 Aligned_cols=58 Identities=22% Similarity=0.285 Sum_probs=41.9
Q ss_pred EEcCCCccCCCHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHhcCCCCCCCCCCCceEEEEEecCCC
Q 024644 172 LACDGIWDCMSSQQLVDFIHEQLHS--ESKISAVCERVLERCLAPSTAGGEGCDNMTMIIVQFKKPI 236 (265)
Q Consensus 172 LaSDGlwd~ls~~ei~~~v~~~~~~--~~~~~~~a~~l~~~a~~~~~~~~~~~DNiTvivv~~~~~~ 236 (265)
-.+|.+-+.++-..+.+.+.+.... ...++.+|+.+.+..+... ..+.-+-|++.++.
T Consensus 41 ~~~D~l~~tidY~~v~~~i~~~~~~~~~~llE~la~~Ia~~i~~~~-------~~v~~v~v~i~Kp~ 100 (116)
T TIGR00525 41 AESDDLGDTVNYAELYSAIEEIVAEKPRDLIETVAYRIADRLFADF-------PQVQRVKVRVSKPN 100 (116)
T ss_pred hccCCchhccCHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHC-------CCceEEEEEEEeCC
Confidence 4588888999999999999876653 3467888999998888721 23555666666654
No 28
>PRK11593 folB bifunctional dihydroneopterin aldolase/dihydroneopterin triphosphate 2'-epimerase; Provisional
Probab=30.32 E-value=2.2e+02 Score=21.56 Aligned_cols=58 Identities=22% Similarity=0.327 Sum_probs=42.9
Q ss_pred EEcCCCccCCCHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHhcCCCCCCCCCCCceEEEEEecCCCC
Q 024644 172 LACDGIWDCMSSQQLVDFIHEQLHS--ESKISAVCERVLERCLAPSTAGGEGCDNMTMIIVQFKKPIQ 237 (265)
Q Consensus 172 LaSDGlwd~ls~~ei~~~v~~~~~~--~~~~~~~a~~l~~~a~~~~~~~~~~~DNiTvivv~~~~~~~ 237 (265)
..||-+-+.++-..+.+.+.+.... ...++.+|+.+.+..+... .+.-+-|.+.+|..
T Consensus 42 ~~~Ddl~~tidY~~v~~~I~~~~~~~~~~LlE~la~~ia~~i~~~~--------~~~~v~v~v~Kp~a 101 (119)
T PRK11593 42 AKSDDVADCLSYADIAETVISHVEGARFALVERVAEEVAELLLARF--------NSPWVRIKLSKPGA 101 (119)
T ss_pred ccccCHhhccCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHhhC--------CCcEEEEEEECCCC
Confidence 5688898999999999999887653 3478889999999888721 23455566666643
No 29
>TIGR00526 folB_dom FolB domain. Two paralogous genes of E. coli, folB (dihydroneopterin aldolase) and folX (d-erythro-7,8-dihydroneopterin triphosphate epimerase) are homologous to each other and homo-octameric. In Pneumocystis carinii, a multifunctional enzyme of folate synthesis has an N-terminal region active as dihydroneopterin aldolase. This region consists of two tandem sequences each homologous to folB and forms tetramers.
Probab=25.87 E-value=2.6e+02 Score=21.05 Aligned_cols=57 Identities=18% Similarity=0.244 Sum_probs=42.8
Q ss_pred EcCCCccCCCHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHhcCCCCCCCCCCCceEEEEEecCCC
Q 024644 173 ACDGIWDCMSSQQLVDFIHEQLHS--ESKISAVCERVLERCLAPSTAGGEGCDNMTMIIVQFKKPI 236 (265)
Q Consensus 173 aSDGlwd~ls~~ei~~~v~~~~~~--~~~~~~~a~~l~~~a~~~~~~~~~~~DNiTvivv~~~~~~ 236 (265)
.+|-+-+.++-.++.+.+.+.... ...++.+|+.+.+.++.. .+.+.-+-|++.++.
T Consensus 43 ~~Ddl~~ti~Y~~l~~~i~~~~~~~~~~llE~la~~ia~~i~~~-------~~~v~~v~v~v~Kp~ 101 (118)
T TIGR00526 43 NSDDLSDSLNYAEIASNITKFVEENPFKLIETLAKSVSEVVLDD-------YQKVTEVELEVSKPK 101 (118)
T ss_pred ccCCHHHccCHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHh-------CCCceEEEEEEECCc
Confidence 477788889999999999887653 346888999999988872 245566777777765
No 30
>PRK11245 folX D-erythro-7,8-dihydroneopterin triphosphate 2'-epimerase; Provisional
Probab=24.02 E-value=3e+02 Score=20.90 Aligned_cols=58 Identities=19% Similarity=0.208 Sum_probs=43.5
Q ss_pred EEcCCCccCCCHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHhcCCCCCCCCCCCceEEEEEecCCCC
Q 024644 172 LACDGIWDCMSSQQLVDFIHEQLHS--ESKISAVCERVLERCLAPSTAGGEGCDNMTMIIVQFKKPIQ 237 (265)
Q Consensus 172 LaSDGlwd~ls~~ei~~~v~~~~~~--~~~~~~~a~~l~~~a~~~~~~~~~~~DNiTvivv~~~~~~~ 237 (265)
-.||=+-+.++-..+.+.+.+.... ...++.+|+.+.+..+. ...+.-+-|++.+|..
T Consensus 46 ~~sDdl~~tidY~~v~~~i~~~v~~~~~~llE~la~~Ia~~i~~--------~~~v~~v~v~v~Kp~a 105 (120)
T PRK11245 46 RTSDDIDDALNYRTITKNIIQHVENNRFSLLEKLTQDVLDIARE--------HPWVTYAEVEIDKPHA 105 (120)
T ss_pred ccccCHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHc--------cCCccEEEEEEECCCC
Confidence 5678888889999999999887643 34788899999987665 2456667777777644
No 31
>PF06972 DUF1296: Protein of unknown function (DUF1296); InterPro: IPR009719 This family represents a conserved region approximately 60 residues long within a number of plant proteins of unknown function.
Probab=21.45 E-value=1.8e+02 Score=19.66 Aligned_cols=27 Identities=19% Similarity=0.426 Sum_probs=22.9
Q ss_pred CCCHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 024644 180 CMSSQQLVDFIHEQLHSESKISAVCERVLE 209 (265)
Q Consensus 180 ~ls~~ei~~~v~~~~~~~~~~~~~a~~l~~ 209 (265)
.-++++|...+.++ +.++.+++++|+.
T Consensus 18 ~hse~eIya~L~ec---nMDpnea~qrLL~ 44 (60)
T PF06972_consen 18 CHSEEEIYAMLKEC---NMDPNEAVQRLLS 44 (60)
T ss_pred CCCHHHHHHHHHHh---CCCHHHHHHHHHh
Confidence 35789999999887 7789999999986
No 32
>PF02152 FolB: Dihydroneopterin aldolase; InterPro: IPR006157 Dihydroneopterin aldolase catalyses the conversion of 7,8-dihydroneopterin to 6-hydroxymethyl-7,8-dihydropterin in the biosynthetic pathway of tetrahydrofolate. In the opportunistic pathogen Pneumocystis carinii, dihydroneopterin aldolase function is expressed as the N-terminal portion of the multifunctional folic acid synthesis protein (Fas). This region encompasses two domains, FasA and FasB, which are 27% amino acid identical. FasA and FasB also share significant amino acid sequence similarity with bacterial dihydroneopterin aldolases. This region consists of two tandem sequences each homologous to folB and which form tetramers [].; GO: 0004150 dihydroneopterin aldolase activity, 0006760 folic acid-containing compound metabolic process; PDB: 1SQL_P 2O90_A 1B9L_A 1RSI_A 2NM2_C 1RRY_A 1RRW_A 1RS2_A 2DHN_A 1DHN_A ....
Probab=21.37 E-value=2.5e+02 Score=20.77 Aligned_cols=57 Identities=21% Similarity=0.349 Sum_probs=43.5
Q ss_pred cCCCccCCCHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHhcCCCCCCCCCCCceEEEEEecCCCC
Q 024644 174 CDGIWDCMSSQQLVDFIHEQLHS--ESKISAVCERVLERCLAPSTAGGEGCDNMTMIIVQFKKPIQ 237 (265)
Q Consensus 174 SDGlwd~ls~~ei~~~v~~~~~~--~~~~~~~a~~l~~~a~~~~~~~~~~~DNiTvivv~~~~~~~ 237 (265)
+|-+-+.++-..+.+.+.+.... -..++.+|+.+.+.++... .-+.-+-|++.+|..
T Consensus 41 ~D~l~~tvdY~~l~~~i~~~~~~~~f~llE~la~~i~~~i~~~~-------~~v~~v~v~v~Kp~a 99 (113)
T PF02152_consen 41 SDDLDDTVDYAELAEAIRELVENSHFNLLETLAERIADRILKEF-------PQVQSVTVKVRKPSA 99 (113)
T ss_dssp HTTGGGSSHHHHHHHHHHHHHHSSEESSHHHHHHHHHHHHHHHT-------TTESEEEEEEEETTS
T ss_pred ccccccccCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHhC-------CCccEEEEEEECCcc
Confidence 58888999999999999887653 2579999999999998832 235567777777654
No 33
>PF05402 PqqD: Coenzyme PQQ synthesis protein D (PqqD); InterPro: IPR008792 This family contains several bacterial coenzyme PQQ synthesis protein D (PqqD) sequences. This protein is required for coenzyme pyrrolo-quinoline-quinone (PQQ) biosynthesis.; PDB: 3G2B_A.
Probab=21.15 E-value=2.3e+02 Score=18.72 Aligned_cols=27 Identities=19% Similarity=0.377 Sum_probs=10.6
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 024644 184 QQLVDFIHEQLHSESKISAVCERVLER 210 (265)
Q Consensus 184 ~ei~~~v~~~~~~~~~~~~~a~~l~~~ 210 (265)
.+...+|.+.+....+...+++.|.+.
T Consensus 16 n~~a~~Iw~~~~g~~t~~ei~~~l~~~ 42 (68)
T PF05402_consen 16 NETAAFIWELLDGPRTVEEIVDALAEE 42 (68)
T ss_dssp -THHHHHHHH--SSS-HHHHHHHHHHH
T ss_pred cHHHHHHHHHccCCCCHHHHHHHHHHH
Confidence 334444444444444555555555443
No 34
>COG0528 PyrH Uridylate kinase [Nucleotide transport and metabolism]
Probab=20.28 E-value=2.1e+02 Score=25.02 Aligned_cols=51 Identities=16% Similarity=0.388 Sum_probs=33.1
Q ss_pred cEEEEEc---CCCccC-------------CCHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCCCCCCCCCceEEEEE
Q 024644 168 DFVVLAC---DGIWDC-------------MSSQQLVDFIHEQLHSESKISAVCERVLERCLAPSTAGGEGCDNMTMIIVQ 231 (265)
Q Consensus 168 ~~liLaS---DGlwd~-------------ls~~ei~~~v~~~~~~~~~~~~~a~~l~~~a~~~~~~~~~~~DNiTvivv~ 231 (265)
+.||.+| |||++. |+..|+.+...+ -....|-.|+.. -++.++|+.
T Consensus 155 d~ll~atn~VDGVY~~DPkk~pdA~~~~~Lty~e~l~~~l~------vmD~tA~~l~~~------------~~i~i~Vfn 216 (238)
T COG0528 155 DVLLKATNKVDGVYDADPKKDPDAKKYDTLTYDEVLKIGLK------VMDPTAFSLARD------------NGIPIIVFN 216 (238)
T ss_pred cEEEEeccCCCceeCCCCCCCCCceecccCCHHHHHHhcCe------eecHHHHHHHHH------------cCCcEEEEe
Confidence 4677777 888874 777777776633 233344445433 578888888
Q ss_pred ecCCC
Q 024644 232 FKKPI 236 (265)
Q Consensus 232 ~~~~~ 236 (265)
+.++.
T Consensus 217 ~~~~~ 221 (238)
T COG0528 217 INKPG 221 (238)
T ss_pred CCCCc
Confidence 77654
No 35
>TIGR03859 PQQ_PqqD coenzyme PQQ biosynthesis protein PqqD. This model identifies PqqD, a protein involved in the final steps of the biosynthesis of pyrroloquinoline quinone, coenzyme PQQ.
Probab=20.09 E-value=3.2e+02 Score=19.20 Aligned_cols=41 Identities=17% Similarity=0.304 Sum_probs=24.2
Q ss_pred CcEEEEEcCCCccCCCHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 024644 167 DDFVVLACDGIWDCMSSQQLVDFIHEQLHSESKISAVCERVLER 210 (265)
Q Consensus 167 d~~liLaSDGlwd~ls~~ei~~~v~~~~~~~~~~~~~a~~l~~~ 210 (265)
+.++|+...|. +.-+++...|.+.+....+..++++.|.+.
T Consensus 16 ~~~Vl~~p~~~---~~Ln~~g~~Iw~lldg~~tv~eI~~~L~~~ 56 (81)
T TIGR03859 16 DCYVLLYPEGM---VKLNDSAGEILELCDGKRSLAEIIQELAQR 56 (81)
T ss_pred CcEEEEcCCce---eeeChHHHHHHHHccCCCcHHHHHHHHHHH
Confidence 45666666553 344555666666666666666666666544
Done!