BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 024645
         (265 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|B2TJZ8|ATPA_CLOBB ATP synthase subunit alpha OS=Clostridium botulinum (strain Eklund
           17B / Type B) GN=atpA PE=3 SV=1
          Length = 504

 Score = 32.7 bits (73), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 7/85 (8%)

Query: 187 SRCSGSDDAVGGSIYD---PAYFSSLFEDSQDNKCLLLGQSDGF--GD--DGSSSGAEVP 239
           SR  G DD + G + +     Y  +L  +  +  C+LLG  +G   GD   GS    EVP
Sbjct: 39  SRVYGLDDCMEGELLEFPNDVYGMALNLEQDNVGCVLLGNEEGIKEGDIVKGSGKIVEVP 98

Query: 240 QPKASMGRSFQSIDQEENAIGKPQT 264
             +A +GR   S+ +E +  G   T
Sbjct: 99  VGEALIGRVVNSLGEELDGKGPINT 123


>sp|B2UZJ8|ATPA_CLOBA ATP synthase subunit alpha OS=Clostridium botulinum (strain Alaska
           E43 / Type E3) GN=atpA PE=3 SV=1
          Length = 504

 Score = 32.7 bits (73), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 7/85 (8%)

Query: 187 SRCSGSDDAVGGSIYD---PAYFSSLFEDSQDNKCLLLGQSDGF--GD--DGSSSGAEVP 239
           SR  G DD + G + +     Y  +L  +  +  C+LLG  +G   GD   GS    EVP
Sbjct: 39  SRVYGLDDCMEGELLEFPNDVYGMALNLEQDNVGCVLLGNEEGIKEGDIVKGSGKIVEVP 98

Query: 240 QPKASMGRSFQSIDQEENAIGKPQT 264
             +A +GR   S+ +E +  G   T
Sbjct: 99  VGEALIGRVVNSLGEELDGKGPINT 123


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.324    0.137    0.417 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,533,755
Number of Sequences: 539616
Number of extensions: 3864265
Number of successful extensions: 12111
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 12109
Number of HSP's gapped (non-prelim): 15
length of query: 265
length of database: 191,569,459
effective HSP length: 115
effective length of query: 150
effective length of database: 129,513,619
effective search space: 19427042850
effective search space used: 19427042850
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (27.7 bits)