Query 024645
Match_columns 265
No_of_seqs 26 out of 28
Neff 2.6
Searched_HMMs 13730
Date Mon Mar 25 11:56:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024645.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/024645hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ugva_ b.34.2.1 (A:) Olygophr 19.3 23 0.0017 23.4 1.7 33 231-263 1-33 (72)
2 d1fftc_ f.25.1.1 (C:) Cytochro 17.8 29 0.0021 26.2 2.2 56 47-103 116-178 (185)
3 d1j3ta_ b.34.2.1 (A:) Intersec 12.5 42 0.003 22.2 1.6 34 231-264 1-34 (74)
4 d1v54c_ f.25.1.1 (C:) Mitochon 12.1 2.2E+02 0.016 22.5 6.4 57 46-103 189-252 (259)
5 d1ujya_ b.34.2.1 (A:) Rac/CDC4 10.4 55 0.004 21.5 1.7 33 232-264 2-34 (76)
6 d1m56c_ f.25.1.1 (C:) Bacteria 9.4 3.3E+02 0.024 21.3 6.5 58 45-103 194-258 (265)
7 d1x2la1 a.35.1.7 (A:9-95) Home 8.4 99 0.0072 22.0 2.5 18 19-36 66-83 (87)
8 d2ad6b1 a.137.2.1 (B:1-69) Met 7.9 61 0.0044 22.6 1.0 13 193-205 20-32 (69)
9 d3bona1 d.92.1.7 (A:3-419) Bot 7.2 97 0.0071 27.7 2.3 13 196-208 66-78 (417)
10 d1w6sb_ a.137.2.1 (B:) Methano 7.2 68 0.005 22.6 1.0 13 193-205 20-32 (73)
No 1
>d1ugva_ b.34.2.1 (A:) Olygophrenin-1 like protein (KIAA0621) {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.26 E-value=23 Score=23.42 Aligned_cols=33 Identities=21% Similarity=0.167 Sum_probs=22.2
Q ss_pred CCCCCccCCCCccccccccccchhhhhccCCCC
Q 024645 231 GSSSGAEVPQPKASMGRSFQSIDQEENAIGKPQ 263 (265)
Q Consensus 231 gs~s~~~~~~~k~~~~rs~~~~d~~e~~~~~~~ 263 (265)
||+.+...|..|.-+-..|.+.+.+|..+++-+
T Consensus 1 Gssgs~~~p~~~~~alydy~~~~~~eLs~~~Gd 33 (72)
T d1ugva_ 1 GSSGSSGTPFRKAKALYACKAEHDSELSFTAGT 33 (72)
T ss_dssp CCSCSSCCSCCCEEESSCBCCCSSSBCCBCTTC
T ss_pred CCCCCCCCCCEEEEEcccCCCCCCCEecCCCCC
Confidence 455555566666667778888877777776544
No 2
>d1fftc_ f.25.1.1 (C:) Cytochrome O ubiquinol oxidase, subunit III {Escherichia coli [TaxId: 562]}
Probab=17.75 E-value=29 Score=26.19 Aligned_cols=56 Identities=18% Similarity=0.194 Sum_probs=33.1
Q ss_pred HHhhhhhhhhhHHHHHHHHHHHHHHHH----hcC---CchhhHHHHHHHHHHHHHHHHHHHHhh
Q 024645 47 LIGSLGALYNGVLLINLAIALFALVAI----ESS---SQSLGRTYAVLLFCSILLDISWFILFT 103 (265)
Q Consensus 47 liGSLga~Y~GVl~~nlAiaLFALVAI----Esg---Sq~LgRtYAvLL~~~llLDI~Wf~lfa 103 (265)
..||.=++.||.|..-+.++++.+..+ ..+ +.+-.+..++ -.+==.+|++|+.+|.
T Consensus 116 ~~~s~fy~lTGlH~lHV~~Gli~L~~~~~r~~~~~~~~~~~~~v~~~-~~YWHFvd~vWi~lf~ 178 (185)
T d1fftc_ 116 GFLSAFFALVGTHGLHVTSGLIWMAVLMVQIARRGLTSTNRTRIMCL-SLFWHFLDVVWICVFT 178 (185)
T ss_dssp STTTHHHHHHHHHTTHHHHTTHHHHHHHHHHHHTCCCTTCCCHHHHH-HHHHHHHHHHHHHHCC
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccchhHHHHH-HHHHHHHHHHHHHHHH
Confidence 455666777999988888777766532 111 1111122222 2233468999999985
No 3
>d1j3ta_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.50 E-value=42 Score=22.20 Aligned_cols=34 Identities=24% Similarity=0.197 Sum_probs=22.3
Q ss_pred CCCCCccCCCCccccccccccchhhhhccCCCCC
Q 024645 231 GSSSGAEVPQPKASMGRSFQSIDQEENAIGKPQT 264 (265)
Q Consensus 231 gs~s~~~~~~~k~~~~rs~~~~d~~e~~~~~~~~ 264 (265)
||+.+......|.-+--.|.+.+.+|..+++-++
T Consensus 1 Gssgs~~~~~~~~~alydy~a~~~~ELs~~~Gd~ 34 (74)
T d1j3ta_ 1 GSSGSSGVENLKAQALCSWTAKKDNHLNFSKHDI 34 (74)
T ss_dssp CCSCCCCCCCCEEEESSCBCCCSTTBCCBCTTCE
T ss_pred CCCCCCCCCCeEEEEccCCCCCCCCEecCCCCCE
Confidence 3444444455677777788888888887776543
No 4
>d1v54c_ f.25.1.1 (C:) Mitochondrial cytochrome c oxidase, subunit III {Cow (Bos taurus) [TaxId: 9913]}
Probab=12.13 E-value=2.2e+02 Score=22.51 Aligned_cols=57 Identities=18% Similarity=0.178 Sum_probs=34.5
Q ss_pred HHHhhhhhhhhhHHHHHHHHHHHHHHHHhc-------CCchhhHHHHHHHHHHHHHHHHHHHHhh
Q 024645 46 ALIGSLGALYNGVLLINLAIALFALVAIES-------SSQSLGRTYAVLLFCSILLDISWFILFT 103 (265)
Q Consensus 46 AliGSLga~Y~GVl~~nlAiaLFALVAIEs-------gSq~LgRtYAvLL~~~llLDI~Wf~lfa 103 (265)
...||.=++-||.|..-+.+++..+.-+=. ++++-.+.-+ .-++==.+|++|+.+|.
T Consensus 189 ~~~gS~ff~lTG~Hg~HVi~G~i~l~~~~~r~~~~~~~~~~~~~~e~-~~~YWHFVDvVWi~lf~ 252 (259)
T d1v54c_ 189 GVYGSTFFVATGFHGLHVIIGSTFLIVCFFRQLKFHFTSNHHFGFEA-AAWYWHFVDVVWLFLYV 252 (259)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSSCCHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccchhHHH-HHHHHhHHHHHHHHHHH
Confidence 677888888899988887777655543321 2222222111 12222358999999985
No 5
>d1ujya_ b.34.2.1 (A:) Rac/CDC42 GEF 6 {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.44 E-value=55 Score=21.53 Aligned_cols=33 Identities=18% Similarity=0.177 Sum_probs=19.4
Q ss_pred CCCCccCCCCccccccccccchhhhhccCCCCC
Q 024645 232 SSSGAEVPQPKASMGRSFQSIDQEENAIGKPQT 264 (265)
Q Consensus 232 s~s~~~~~~~k~~~~rs~~~~d~~e~~~~~~~~ 264 (265)
|+.+..+.++...+--.|.+.+.+|..+++-++
T Consensus 2 s~~~~g~~~~~~rAlydy~a~~~~eLs~~~Gd~ 34 (76)
T d1ujya_ 2 SSGSSGSHQLIVKARFNFKQTNEDELSVCKGDI 34 (76)
T ss_dssp CCCCCSCCCEEEECCSCBCCSSTTSCCBCSSCC
T ss_pred CCCCCCCCCEEEEECccCCCCCCCCccCCCCCE
Confidence 333334444444455578888777877766543
No 6
>d1m56c_ f.25.1.1 (C:) Bacterial aa3 type cytochrome c oxidase subunit III {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=9.37 E-value=3.3e+02 Score=21.27 Aligned_cols=58 Identities=12% Similarity=0.214 Sum_probs=35.3
Q ss_pred HHHHhhhhhhhhhHHHHHHHHHHHHHHHHhc-------CCchhhHHHHHHHHHHHHHHHHHHHHhh
Q 024645 45 CALIGSLGALYNGVLLINLAIALFALVAIES-------SSQSLGRTYAVLLFCSILLDISWFILFT 103 (265)
Q Consensus 45 cAliGSLga~Y~GVl~~nlAiaLFALVAIEs-------gSq~LgRtYAvLL~~~llLDI~Wf~lfa 103 (265)
-...||.=+.-||.|..-+.+++..+.-+=. ++.+..+. -...++==.+|++|+.+|.
T Consensus 194 ~~~~gs~ff~lTG~Hg~HV~~G~i~l~~~~~~~~~~~~~~~~~~~~-e~~~~YWHFVDvVWi~lf~ 258 (265)
T d1m56c_ 194 GNIYGANFFMATGFHGFHVIVGTIFLLVCLIRVQRGHFTPEKHVGF-EAAIWYWHFVDVVWLFLFA 258 (265)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCSSCCHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcchhHHH-HHHHHHHHHHHHHHHHHHH
Confidence 3457888888899998888777665443221 12222222 2222334468999999986
No 7
>d1x2la1 a.35.1.7 (A:9-95) Homeobox protein Cux-2, CUTL2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.41 E-value=99 Score=21.96 Aligned_cols=18 Identities=11% Similarity=0.198 Sum_probs=14.4
Q ss_pred HHHHHHhhchHHHHHHHH
Q 024645 19 DEIQTLLRDYDRLQYIAV 36 (265)
Q Consensus 19 ~ri~~wl~dyd~lQ~lA~ 36 (265)
-|+++||.|++++..|..
T Consensus 66 ~RM~~WL~~p~~v~~L~~ 83 (87)
T d1x2la1 66 IKMKQFLSDEQNVLALRT 83 (87)
T ss_dssp HHHHHHHTCTHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHH
Confidence 368999999998887754
No 8
>d2ad6b1 a.137.2.1 (B:1-69) Methanol dehydrogenase, light chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}
Probab=7.86 E-value=61 Score=22.64 Aligned_cols=13 Identities=38% Similarity=0.754 Sum_probs=10.7
Q ss_pred CCcccccccCccc
Q 024645 193 DDAVGGSIYDPAY 205 (265)
Q Consensus 193 ~~ilgGSIYdpay 205 (265)
.+.+.||-|||-.
T Consensus 20 P~kiaGsKYDPkh 32 (69)
T d2ad6b1 20 PEKIAGSKYDPKH 32 (69)
T ss_dssp CSCCTTSTTCCCC
T ss_pred chhhcCCcCCCCC
Confidence 4788999999963
No 9
>d3bona1 d.92.1.7 (A:3-419) Botulinum neurotoxin {Clostridium botulinum, serotype A [TaxId: 1491]}
Probab=7.21 E-value=97 Score=27.72 Aligned_cols=13 Identities=46% Similarity=0.692 Sum_probs=10.5
Q ss_pred ccccccCcccchh
Q 024645 196 VGGSIYDPAYFSS 208 (265)
Q Consensus 196 lgGSIYdpayysS 208 (265)
.-|++|||.|-|.
T Consensus 66 ~~~~yYDpnyLsT 78 (417)
T d3bona1 66 VPVSYYDSTYLST 78 (417)
T ss_dssp CSSCCCCTTTTCS
T ss_pred CCcceeCcccccc
Confidence 4478999999874
No 10
>d1w6sb_ a.137.2.1 (B:) Methanol dehydrogenase, light chain {Methylobacterium extorquens [TaxId: 408]}
Probab=7.17 E-value=68 Score=22.57 Aligned_cols=13 Identities=38% Similarity=0.754 Sum_probs=10.7
Q ss_pred CCcccccccCccc
Q 024645 193 DDAVGGSIYDPAY 205 (265)
Q Consensus 193 ~~ilgGSIYdpay 205 (265)
.+.+.||-|||-.
T Consensus 20 P~kiaGsKYDPkh 32 (73)
T d1w6sb_ 20 PEKIAGSKYDPKH 32 (73)
T ss_dssp CSCCTTSTTCCCC
T ss_pred chhhcCCcCCCCC
Confidence 4788999999963
Done!