Query 024646
Match_columns 265
No_of_seqs 66 out of 68
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 11:58:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024646.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024646hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a8j_B Elongator complex prote 99.0 4.4E-09 1.5E-13 96.0 11.9 99 147-251 101-216 (270)
2 4a8j_C Elongator complex prote 98.0 0.00018 6.2E-09 66.2 15.9 170 15-214 31-232 (280)
3 3bs4_A Uncharacterized protein 97.8 0.00028 9.6E-09 63.7 13.1 154 50-212 44-213 (260)
4 2zts_A Putative uncharacterize 94.5 0.48 1.6E-05 39.2 11.5 172 16-211 26-206 (251)
5 2w0m_A SSO2452; RECA, SSPF, un 92.3 2.8 9.7E-05 33.9 12.5 139 54-213 50-192 (235)
6 2dr3_A UPF0273 protein PH0284; 92.2 0.77 2.6E-05 37.9 9.1 139 54-212 50-196 (247)
7 2i1q_A DNA repair and recombin 91.6 1.3 4.4E-05 39.3 10.4 126 56-213 143-291 (322)
8 4a8j_A Elongator complex prote 89.9 0.64 2.2E-05 44.0 7.1 68 148-215 219-294 (361)
9 3bh0_A DNAB-like replicative h 89.6 1.7 5.8E-05 38.9 9.4 65 148-213 183-266 (315)
10 2z43_A DNA repair and recombin 88.9 2.3 7.8E-05 38.1 9.7 128 55-213 141-290 (324)
11 2q6t_A DNAB replication FORK h 82.2 11 0.00037 35.2 11.1 28 54-81 228-257 (444)
12 1q57_A DNA primase/helicase; d 80.0 17 0.00058 34.3 11.7 65 148-213 356-442 (503)
13 2cvh_A DNA repair and recombin 79.8 5.2 0.00018 32.3 7.1 127 53-213 43-185 (220)
14 3bgw_A DNAB-like replicative h 78.9 15 0.00052 34.7 10.9 65 148-213 312-395 (444)
15 1xp8_A RECA protein, recombina 76.7 15 0.00052 34.0 10.0 120 54-214 101-244 (366)
16 3cmu_A Protein RECA, recombina 75.5 2.5 8.5E-05 48.0 5.1 118 53-212 60-202 (2050)
17 1v5w_A DMC1, meiotic recombina 70.8 22 0.00074 32.1 9.4 39 54-92 155-195 (343)
18 2r6a_A DNAB helicase, replicat 69.6 29 0.001 32.3 10.3 66 148-214 315-400 (454)
19 2ehv_A Hypothetical protein PH 62.1 31 0.0011 28.1 7.9 139 53-211 57-206 (251)
20 1n0w_A DNA repair protein RAD5 56.6 30 0.001 28.1 6.9 27 55-81 58-86 (243)
21 1u94_A RECA protein, recombina 53.9 29 0.001 31.8 7.0 65 148-212 143-231 (356)
22 3cmw_A Protein RECA, recombina 52.1 14 0.00049 41.2 5.3 119 53-212 60-202 (1706)
23 2zr9_A Protein RECA, recombina 46.8 61 0.0021 29.4 7.9 64 148-213 141-230 (349)
24 3cmw_A Protein RECA, recombina 44.9 19 0.00065 40.3 4.9 133 32-212 395-551 (1706)
25 3cmu_A Protein RECA, recombina 41.8 1.2E+02 0.0041 34.7 10.6 118 54-212 410-551 (2050)
26 3lda_A DNA repair protein RAD5 30.4 1.4E+02 0.0047 27.8 7.7 65 148-213 275-363 (400)
27 4dm9_A Ubiquitin carboxyl-term 29.6 38 0.0013 29.7 3.4 32 61-97 9-41 (228)
28 1cmx_A Protein (ubiquitin YUH1 27.1 46 0.0016 29.4 3.5 31 60-95 8-38 (235)
29 1xd3_A Ubiquitin carboxyl-term 25.2 52 0.0018 28.8 3.5 33 60-97 6-39 (230)
30 3hr8_A Protein RECA; alpha and 24.4 3.3E+02 0.011 24.9 9.0 18 195-212 212-229 (356)
31 3zzx_A Thioredoxin; oxidoreduc 22.5 66 0.0023 23.6 3.2 24 66-96 7-30 (105)
32 1cr0_A DNA primase/helicase; R 21.8 65 0.0022 27.5 3.4 66 148-214 149-236 (296)
33 4b5o_A Alpha-tubulin N-acetylt 21.6 34 0.0012 29.9 1.5 56 32-97 139-197 (200)
34 2wdt_A Ubiquitin carboxyl-term 21.6 69 0.0023 28.2 3.5 32 60-97 7-39 (232)
35 3rii_A Ubiquitin carboxyl-term 20.1 73 0.0025 28.0 3.4 32 60-97 13-45 (233)
No 1
>4a8j_B Elongator complex protein 5; transcription; 2.10A {Saccharomyces cerevisiae} PDB: 4ejs_B
Probab=98.96 E-value=4.4e-09 Score=96.00 Aligned_cols=99 Identities=16% Similarity=0.229 Sum_probs=74.5
Q ss_pred cEEEEEechhHHHHhcChHHHHHHHHhhhcCCceeEEEEeeccccc-------------chhHHHHHHhhheeEEEeeeC
Q 024646 147 RFSIAIDSVSEMVRHASISSVAGILSNLRSHDQVSSIFWLLHSDLH-------------EIKFTSVLEYLSSMVASVEPF 213 (265)
Q Consensus 147 r~~VaIDSLS~LL~h~s~~~vc~lL~~Lr~~~~vssVl~LLHsDLH-------------e~~vv~ALe~LAs~vv~v~P~ 213 (265)
+..|+||||+.++. ..+.++|..+-. | -.++++--|.|+. .|....-|.||||++++|.|.
T Consensus 101 k~LVIIDSLN~l~~----~~L~~FlsSi~s-P-~~sLv~vYH~DvP~~~~~~~~~~n~y~Ps~LtLL~ylATTIl~v~~~ 174 (270)
T 4a8j_B 101 KHMVIIDSLNYIST----EYITRFLSEIAS-P-HCTMVATYHKDIKDENRTVIPDWNNNYPDKLTLLQFMATTIVDIDVV 174 (270)
T ss_dssp CEEEEESCGGGSCG----GGHHHHHHHHCC-T-TEEEEEEEETTSCCC------CTTBCCCCHHHHHHHHCSEEEEEEEC
T ss_pred ceEEEEecCcchhh----hhHHHHHHHhhc-C-CcEEEEEecCCCCCCCccccccccCCCCChHHHHHHhhhheEEEecC
Confidence 58999999999996 578899998885 5 4589999999974 566778899999999999999
Q ss_pred Ccccccccchhhhhhhh----hhccccceEEEEeecCCCchh
Q 024646 214 NQAAFGQRVDLENLSML----EQNFRKGKFHVRFKRRNGRVR 251 (265)
Q Consensus 214 ~~~~~~~~~~~~~~~~l----~~n~~kg~~~vr~KrrnGRV~ 251 (265)
.....-.|+--.+++-+ .-|.+.=++++..|||.||..
T Consensus 175 ~~~~~deE~l~~~l~k~~~P~glN~~~f~l~ltnrRKSGRsl 216 (270)
T 4a8j_B 175 LTGTLDTEEVSELLNEFRIPRGLNNDIFQLRLVNKRKSGRSL 216 (270)
T ss_dssp CCSSCCHHHHHHHHHTTCCCSSCSCSEEEEEEEEECTTSCEE
T ss_pred CCCCccHHHHHHHhhheecccccCCCeEEEEEEeccccCcce
Confidence 87664444322222222 234444468999999999964
No 2
>4a8j_C Elongator complex protein 6; transcription; 2.10A {Saccharomyces cerevisiae} PDB: 4ejs_C
Probab=98.01 E-value=0.00018 Score=66.18 Aligned_cols=170 Identities=13% Similarity=0.162 Sum_probs=111.7
Q ss_pred cC-CCCCceeeccCCCCCchhhHHHHHHHHHHHHHHhhc-------------cccceeEEEEeeCChHHHHHHHhhcCCC
Q 024646 15 EG-EHAPALTIKDSKASPFGFDVFNYVLTQLSNYILAGK-------------SQSRGLVVVAYSRSPSFYVDLLKRRGID 80 (265)
Q Consensus 15 ~g-e~ap~l~i~Dsl~~~~g~~~~~h~~~~l~s~i~a~~-------------~q~~~Vhvl~fe~spe~y~~~lk~~G~d 80 (265)
++ +..-.++|...+.+..-=.+-.+ +.+.+.... .....|+++.|-.++++|...+||-|+|
T Consensus 31 ~~~~~~~L~liT~~~gTsp~WLin~l----ves~L~G~~~~~n~~~~~~~~~~~~~~Vv~~SF~~~~~fy~~~~~Klgid 106 (280)
T 4a8j_C 31 QDSNSHNLFFITHQSCTQPLWMINAL----VETHVLGSPSSLNESSSSMLPSSTRSHAVLASFIHEQNYFTNSLNKLKIP 106 (280)
T ss_dssp TSSSCCEEEEEEECTTSCCHHHHHHH----HHHHHHSSCHHHHCC----CCCCCCCEEEEEESSSCHHHHHHHHHHTTCC
T ss_pred CCCCCceEEEEccccCCChHHHHHHH----HHHHhcCCcccccccccccccCCCCceEEEEEeecCHHHHHHHHHHhCCC
Confidence 55 67778889999855431222333 223332111 2335799999999999999999999999
Q ss_pred ccCCCCeEEEEeccCCCCCCccc-ccCccccccccccccccccchhhhHHHHHHHHhccCccCCCCCcEEEEEechhHHH
Q 024646 81 IASSHDWIHILDCYTDPLGWKNW-LIDKDISQEASSLSSFCQDVRNLDKLYSLIIEQGKGLIGQGKDRFSIAIDSVSEMV 159 (265)
Q Consensus 81 ~~~~~~~v~i~D~ysDPlgW~~~-~~~~~~~~~~s~~~~~~~~v~~L~sl~~~~~e~~~~~~~~~k~r~~VaIDSLS~LL 159 (265)
. +++.|+|||||.. .++ .. .+ .. +..+++..++..++... + .+.+|+||..-.||
T Consensus 107 l----~~f~fvD~~tdl~--~~~~~~--kp---~~------~~l~~v~~~f~~~i~~~------~-~~~vlIldqpdlLL 162 (280)
T 4a8j_C 107 S----NNYNVLDFLSDFI--VNNIHN--KP---RD------KILSDVLAKFSAAIQNN------P-TDTIVIIEQPELLL 162 (280)
T ss_dssp G----GGEEEEESSTTHH--HHHTTT--CC---HH------HHHHHHHHHHHHHHHTS------T-TSEEEEEECGGGHH
T ss_pred h----hheeEEEecchhh--hhcccC--Cc---ch------hhhHHHHHHHhhhhhcc------C-CCeEEEEcChHHHH
Confidence 5 5899999999988 111 01 00 00 01245666666655521 1 23899999999888
Q ss_pred Hh---cChHHH-HHHHHhhhcCCceeEEEEeecccc---cc----------hhHHHHHHhhheeEEEeeeCC
Q 024646 160 RH---ASISSV-AGILSNLRSHDQVSSIFWLLHSDL---HE----------IKFTSVLEYLSSMVASVEPFN 214 (265)
Q Consensus 160 ~h---~s~~~v-c~lL~~Lr~~~~vssVl~LLHsDL---He----------~~vv~ALe~LAs~vv~v~P~~ 214 (265)
-- ....++ -.+|..|++... ..|+ -+..|. |. ..++..+.|.|.++++|.|+.
T Consensus 163 a~t~~it~~~L~~~~I~~L~k~~~-~lvv-t~saD~pli~~~~~t~~~~e~a~f~~~l~H~A~~visLrpL~ 232 (280)
T 4a8j_C 163 SLVSGLTCSELNNKFITPLLRQCK-VLII-VSNSDIFNIDEYDASVHSSNLQNFYKSSFIKSMINLNLNPLK 232 (280)
T ss_dssp HHSTTCCHHHHHHHTHHHHHHTCS-EEEE-EEECGGGCCSSCCHHHHTHHHHHHHHHHHHHCSEEEEEECCC
T ss_pred HhccCCCHHHHHHHHHHHHHHhcc-eEEE-EeccCccccccCCCCchHHHHHHHHHHHHHHhheEEeecccC
Confidence 74 456677 888999987433 2233 333443 21 257888999999999999973
No 3
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=97.80 E-value=0.00028 Score=63.68 Aligned_cols=154 Identities=12% Similarity=0.083 Sum_probs=94.4
Q ss_pred hhccccceeEEEEeeCChHHHHHHHhhcCCCccCC--CCeEEEEeccCCCCCCcccccCccccccccccccccccchhhh
Q 024646 50 AGKSQSRGLVVVAYSRSPSFYVDLLKRRGIDIASS--HDWIHILDCYTDPLGWKNWLIDKDISQEASSLSSFCQDVRNLD 127 (265)
Q Consensus 50 a~~~q~~~Vhvl~fe~spe~y~~~lk~~G~d~~~~--~~~v~i~D~ysDPlgW~~~~~~~~~~~~~s~~~~~~~~v~~L~ 127 (265)
++..+++.+.+++||-||+.+..-++..|+|.+.. +.++.++|.|++..++...... --+.+..+ ++..+-
T Consensus 44 ~g~~~Ge~~~~~~~~e~~~~l~~~~~~~G~dl~~~~~~g~l~i~d~~~~~~~~~~~~~~---v~~~~~e~----d~~~l~ 116 (260)
T 3bs4_A 44 RKLKSDNLVGMFSISYPLQLIIRILSRFGVDVIKYLENHRLAIVDTFGSFHGIKATMPG---VWYLEGML----SSETLP 116 (260)
T ss_dssp HHHHTTCEEEEEECSSCHHHHHHHHHHTTCCHHHHHHTTSEEEECHHHHHHTC---CTT---EECCCSCC----CTTTHH
T ss_pred HHHHCCCcEEEEEEeCCHHHHHHHHHHcCCCHHHHhhCCcEEEEEcccccccccccccc---eecccccC----CHHHHH
Confidence 57788999999999999999999999999997531 3579999998855443321000 00000001 222331
Q ss_pred HHHHHHHHhccC---ccC-CCCCcEEEEEechhHHHHhcChHHHHHHHHhhhc---------C-CceeEEEEeecccccc
Q 024646 128 KLYSLIIEQGKG---LIG-QGKDRFSIAIDSVSEMVRHASISSVAGILSNLRS---------H-DQVSSIFWLLHSDLHE 193 (265)
Q Consensus 128 sl~~~~~e~~~~---~~~-~~k~r~~VaIDSLS~LL~h~s~~~vc~lL~~Lr~---------~-~~vssVl~LLHsDLHe 193 (265)
.....+++..|. +.. -+..|++++||||+.+..-.+.....+++.++.. . ..+..++ ++. |.+.
T Consensus 117 ~~i~~iv~~~~~~~~i~~~~~~~rvv~vidsldsl~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~ttil-~~~-~~~~ 194 (260)
T 3bs4_A 117 IKYAKAVEDHKKVWMDLNLFEGRELYGFAISMSGYLEVFTPEETLRYLETSAEVRYGHPAYKKYPRGTNFW-LWE-GVKD 194 (260)
T ss_dssp HHHHHHHHHHHHHHHHTTCSTTCCEEEEEETGGGGGGTSCHHHHHHHHHHHHHHHHHCHHHHSSCCCEEEE-EEE-SCSC
T ss_pred HHHHHHHHhhccccchhhccCCceEEEEEeecchHHHHhChhhHHHHHHHHHHhhhhHHHHhccCCcEEEE-EEC-CCcc
Confidence 112344442100 011 1224578888888888777766666555555532 2 4454444 455 7777
Q ss_pred hhHHHHHHhhheeEEEeee
Q 024646 194 IKFTSVLEYLSSMVASVEP 212 (265)
Q Consensus 194 ~~vv~ALe~LAs~vv~v~P 212 (265)
+.+...+.++|-.+|.+.-
T Consensus 195 ~~~~~~l~~laD~VI~lr~ 213 (260)
T 3bs4_A 195 KRVLLSVYRRADYVLKTRS 213 (260)
T ss_dssp HHHHHHHHHHCSEEEEEEE
T ss_pred cccccceEEEeeEEEEEEE
Confidence 7777889999999999954
No 4
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=94.51 E-value=0.48 Score=39.22 Aligned_cols=172 Identities=11% Similarity=0.042 Sum_probs=81.5
Q ss_pred CCCCCceeeccCCCCCchhhHHHHHHHHHHHHHHhhccccceeEEEEeeCChHHHHHHHhhcCCCccC--CCCeEEEEec
Q 024646 16 GEHAPALTIKDSKASPFGFDVFNYVLTQLSNYILAGKSQSRGLVVVAYSRSPSFYVDLLKRRGIDIAS--SHDWIHILDC 93 (265)
Q Consensus 16 ge~ap~l~i~Dsl~~~~g~~~~~h~~~~l~s~i~a~~~q~~~Vhvl~fe~spe~y~~~lk~~G~d~~~--~~~~v~i~D~ 93 (265)
|=+++.+++-=--...+-+.+..+++.. +....++.|.++.+|-+++.+.+-+.+.|.+.+. ...++.+.|.
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~~------~~~~~~~~v~~~s~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 99 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYK------GAEEYGEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDG 99 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHH------HHHHHCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC-
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHH------HHHhcCCCceeecccCCHHHHHHHHHHcCCChHHHHhcCcchhhhh
Confidence 4445544443323343434444443321 1234567899999999999999988877765432 2346889998
Q ss_pred cCCCCCCcccccCccccccccccccccccchhhhHHHHHHHHhccCccCCCCCcEEEEEechhHHHHhcC-hHHHHHHHH
Q 024646 94 YTDPLGWKNWLIDKDISQEASSLSSFCQDVRNLDKLYSLIIEQGKGLIGQGKDRFSIAIDSVSEMVRHAS-ISSVAGILS 172 (265)
Q Consensus 94 ysDPlgW~~~~~~~~~~~~~s~~~~~~~~v~~L~sl~~~~~e~~~~~~~~~k~r~~VaIDSLS~LL~h~s-~~~vc~lL~ 172 (265)
+....+.......... ......++.......++. .++ -.|+||+++.+....+ ...+...++
T Consensus 100 ~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~-------~~~-~~vviD~~~~l~~~~~~~~~~~~~~~ 162 (251)
T 2zts_A 100 VSSVVGLPSEEKFVLE---------DRFNVDNFLRYIYRVVKA-------INA-KRLVIDSIPSIALRLEEERKIREVLL 162 (251)
T ss_dssp ---------------------------CCHHHHHHHHHHHHHH-------TTC-SEEEEECHHHHHHHSSSGGGHHHHHH
T ss_pred HHHHhhcccchhcccc---------ccccHHHHHHHHHHHHHh-------cCC-cEEEEEcHHHHhhhccChHHHHHHHH
Confidence 8766543321110000 000112222211222221 223 4789999999987553 233444444
Q ss_pred hhhcC---CceeEEEEeecc---cccchhHHHHHHhhheeEEEee
Q 024646 173 NLRSH---DQVSSIFWLLHS---DLHEIKFTSVLEYLSSMVASVE 211 (265)
Q Consensus 173 ~Lr~~---~~vssVl~LLHs---DLHe~~vv~ALe~LAs~vv~v~ 211 (265)
.|.+. -.+. |+.+-|. +.-.....+.++++|.+++.+.
T Consensus 163 ~L~~~a~~~~i~-vi~~~q~~~~~~~~~~~~~~~~~~aD~vi~l~ 206 (251)
T 2zts_A 163 KLNTILLEMGVT-TILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp HHHHHHHHHCCE-EEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred HHHHHHHHcCCC-eEEEEEEecccccccccCCceeEEeeEEEEEE
Confidence 44442 1122 2222221 1111223456789999998885
No 5
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=92.31 E-value=2.8 Score=33.88 Aligned_cols=139 Identities=12% Similarity=0.089 Sum_probs=73.2
Q ss_pred ccceeEEEEeeCChHHHHHHHhhcCCCccCC-CCeEEEEeccCCCCCCcccccCccccccccccccccccchhhhHHHHH
Q 024646 54 QSRGLVVVAYSRSPSFYVDLLKRRGIDIASS-HDWIHILDCYTDPLGWKNWLIDKDISQEASSLSSFCQDVRNLDKLYSL 132 (265)
Q Consensus 54 q~~~Vhvl~fe~spe~y~~~lk~~G~d~~~~-~~~v~i~D~ysDPlgW~~~~~~~~~~~~~s~~~~~~~~v~~L~sl~~~ 132 (265)
++..|.++++|.+++.+...++..|++.... ..++.++|.+....+ ...... .. +..++...+..
T Consensus 50 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-----------~~--~~~~~~~~~~~ 115 (235)
T 2w0m_A 50 DGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEKKLIIIDALMKEKE-DQWSLV-----------NL--TPEELVNKVIE 115 (235)
T ss_dssp HTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTTTEEEEECCC-----CTTBCS-----------SC--CHHHHHHHHHH
T ss_pred CCCeEEEEEcccCHHHHHHHHHHhcchHHHHhhCCEEEEeccccccC-ceeeec-----------CC--CHHHHHHHHHH
Confidence 4568999999999998888777777765431 225778887765543 110000 00 22333322233
Q ss_pred HHHhccCccCCCCCcEEEEEechhHHH--HhcChHHHHHHHHhhhcCCceeEEEEeecccccchhHH-HHHHhhheeEEE
Q 024646 133 IIEQGKGLIGQGKDRFSIAIDSVSEMV--RHASISSVAGILSNLRSHDQVSSIFWLLHSDLHEIKFT-SVLEYLSSMVAS 209 (265)
Q Consensus 133 ~~e~~~~~~~~~k~r~~VaIDSLS~LL--~h~s~~~vc~lL~~Lr~~~~vssVl~LLHsDLHe~~vv-~ALe~LAs~vv~ 209 (265)
.....+ ++ ...|+||+++.++ .......+.+.|.++.+...+ .|+..-|..-.+.+.. ..+++++..++.
T Consensus 116 ~~~~~~-----~~-~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~-~vi~~~h~~~~~~~~~~~~~~~~~d~vi~ 188 (235)
T 2w0m_A 116 AKQKLG-----YG-KARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNF-TIYATSQYAITTSQAFGFGVEHVADGIIR 188 (235)
T ss_dssp HHHHHC-----SS-CEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTE-EEEEEEC-----------CHHHHCSEEEE
T ss_pred HHHhhC-----CC-ceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCC-eEEEEeccCcccccccccchheeeeEEEE
Confidence 232211 12 1589999999987 323345666777766442233 4444444331221111 458889999988
Q ss_pred eeeC
Q 024646 210 VEPF 213 (265)
Q Consensus 210 v~P~ 213 (265)
+.-.
T Consensus 189 l~~~ 192 (235)
T 2w0m_A 189 FRRM 192 (235)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8653
No 6
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=92.20 E-value=0.77 Score=37.95 Aligned_cols=139 Identities=14% Similarity=0.147 Sum_probs=72.2
Q ss_pred ccceeEEEEeeCChHHHHHHHhhcCCCccCC--CCeEEEEeccCCCCCCcccccCccccccccccccc--cccchhhhHH
Q 024646 54 QSRGLVVVAYSRSPSFYVDLLKRRGIDIASS--HDWIHILDCYTDPLGWKNWLIDKDISQEASSLSSF--CQDVRNLDKL 129 (265)
Q Consensus 54 q~~~Vhvl~fe~spe~y~~~lk~~G~d~~~~--~~~v~i~D~ysDPlgW~~~~~~~~~~~~~s~~~~~--~~~v~~L~sl 129 (265)
++..|.++.+|.+++...+-+++.|++.... ..++.+.|+|.+-.+...... .+.. +.++.++...
T Consensus 50 ~~~~v~~~~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~ 119 (247)
T 2dr3_A 50 MGEPGIYVALEEHPVQVRQNMAQFGWDVKPYEEKGMFAMVDAFTAGIGKSKEYE----------KYIVHDLTDIREFIEV 119 (247)
T ss_dssp TTCCEEEEESSSCHHHHHHHHHTTTCCCHHHHHHTSEEEEECSTTTTCC--CCC----------SCBCSCCSSHHHHHHH
T ss_pred cCCeEEEEEccCCHHHHHHHHHHcCCCHHHHhhCCcEEEEecchhhcccccccc----------cccccCccCHHHHHHH
Confidence 5778999999999999988888888875321 236899998765443211000 0000 0112222222
Q ss_pred HHHHHHhccCccCCCCCcEEEEEechhHHHHhcChHHHHHHHHhhhc---CCceeEEEEeecccccchhH-HHHHHhhhe
Q 024646 130 YSLIIEQGKGLIGQGKDRFSIAIDSVSEMVRHASISSVAGILSNLRS---HDQVSSIFWLLHSDLHEIKF-TSVLEYLSS 205 (265)
Q Consensus 130 ~~~~~e~~~~~~~~~k~r~~VaIDSLS~LL~h~s~~~vc~lL~~Lr~---~~~vssVl~LLHsDLHe~~v-v~ALe~LAs 205 (265)
....++. .++ -.|+||+++.++. ......-+.+..|.+ ...+ .|+..-|..-..... --++++.+.
T Consensus 120 i~~~~~~-------~~~-~~vviD~~~~l~~-~~~~~~~~~l~~l~~~~~~~~~-~vi~~~h~~~~~~~~~~~~~~~~~D 189 (247)
T 2dr3_A 120 LRQAIRD-------INA-KRVVVDSVTTLYI-NKPAMARSIILQLKRVLAGTGC-TSIFVSQVSVGERGFGGPGVEHGVD 189 (247)
T ss_dssp HHHHHHH-------HTC-CEEEEETSGGGTT-TCGGGHHHHHHHHHHHHHHTTC-EEEEEEECC----CCC-CCHHHHSS
T ss_pred HHHHHHH-------hCC-CEEEECCchHhhc-CCHHHHHHHHHHHHHHHHHCCC-eEEEEecCCCCcccccccccceeEE
Confidence 1222221 123 3799999998873 222223333333332 1222 455555543321100 003778888
Q ss_pred eEEEeee
Q 024646 206 MVASVEP 212 (265)
Q Consensus 206 ~vv~v~P 212 (265)
+++.+..
T Consensus 190 ~vi~L~~ 196 (247)
T 2dr3_A 190 GIIRLDL 196 (247)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 8888865
No 7
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=91.59 E-value=1.3 Score=39.32 Aligned_cols=126 Identities=11% Similarity=0.056 Sum_probs=69.2
Q ss_pred ceeEEEEeeCC--hHHHHHHHhhcCCCccCCCCeEEEEeccCCCCCCcccccCccccccccccccccccchhhhHHHHHH
Q 024646 56 RGLVVVAYSRS--PSFYVDLLKRRGIDIASSHDWIHILDCYTDPLGWKNWLIDKDISQEASSLSSFCQDVRNLDKLYSLI 133 (265)
Q Consensus 56 ~~Vhvl~fe~s--pe~y~~~lk~~G~d~~~~~~~v~i~D~ysDPlgW~~~~~~~~~~~~~s~~~~~~~~v~~L~sl~~~~ 133 (265)
..|..+.+|.+ ++...+.+++.|+|.+..-+++.+.+.++ .. ++..++..+
T Consensus 143 ~~v~yi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~~----~~-----------------------~~~~~l~~l 195 (322)
T 2i1q_A 143 PKAVYIDTEGTFRPERIMQMAEHAGIDGQTVLDNTFVARAYN----SD-----------------------MQMLFAEKI 195 (322)
T ss_dssp EEEEEEESSSCCCHHHHHHHHHHHTCCHHHHHHTEEEEECSS----HH-----------------------HHHHHHHTH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHcCCCHHHHhcCEEEEeCCC----HH-----------------------HHHHHHHHH
Confidence 68999999987 88888888888887532113466555321 10 111111111
Q ss_pred HHhccCccCCCCCcEEEEEechhHHHHhc-----Ch----HHHHHHHHhhhcC---CceeEEEEeec--cccc-------
Q 024646 134 IEQGKGLIGQGKDRFSIAIDSVSEMVRHA-----SI----SSVAGILSNLRSH---DQVSSIFWLLH--SDLH------- 192 (265)
Q Consensus 134 ~e~~~~~~~~~k~r~~VaIDSLS~LL~h~-----s~----~~vc~lL~~Lr~~---~~vssVl~LLH--sDLH------- 192 (265)
.+..+ ...++ -.|+||||+.+.+.. .. ..+.++++.|++. -.+ .|+..-| .+..
T Consensus 196 ~~~~~---~~~~~-~lvVIDsl~~l~~~~~~~~~~~~~r~~~~~~~~~~L~~la~~~~~-~vi~~nq~~~~~~~~~g~~~ 270 (322)
T 2i1q_A 196 EDLIQ---EGNNI-KLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATLNKLADLFNC-VVLVTNQVSAKPDAFFGMAE 270 (322)
T ss_dssp HHHHH---TTCEE-EEEEEECSSHHHHHHCCCTTSHHHHHHHHHHHHHHHHHHHHHTTC-EEEEEECEECC-------CC
T ss_pred HHHHh---hccCc-cEEEEECcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCC-EEEEECceeecCCCCCCCCc
Confidence 11111 00123 589999999998641 11 2356666666552 122 2222222 2222
Q ss_pred chhHHHHHHhhheeEEEeeeC
Q 024646 193 EIKFTSVLEYLSSMVASVEPF 213 (265)
Q Consensus 193 e~~vv~ALe~LAs~vv~v~P~ 213 (265)
.|.--.++++.+++++.+...
T Consensus 271 ~~~g~~~~~~~~d~~i~l~~~ 291 (322)
T 2i1q_A 271 QAIGGHIVGHAATFRFFVRKG 291 (322)
T ss_dssp EESSHHHHHHHCSEEEEEEEC
T ss_pred CCCCcHHHHhcCcEEEEEEec
Confidence 233345899999999999753
No 8
>4a8j_A Elongator complex protein 4; transcription; 2.10A {Saccharomyces cerevisiae} PDB: 4ejs_A
Probab=89.95 E-value=0.64 Score=43.98 Aligned_cols=68 Identities=24% Similarity=0.305 Sum_probs=54.9
Q ss_pred EEEEEechhHHHHhc----ChHHHHHHHHhhhc----CCceeEEEEeecccccchhHHHHHHhhheeEEEeeeCCc
Q 024646 148 FSIAIDSVSEMVRHA----SISSVAGILSNLRS----HDQVSSIFWLLHSDLHEIKFTSVLEYLSSMVASVEPFNQ 215 (265)
Q Consensus 148 ~~VaIDSLS~LL~h~----s~~~vc~lL~~Lr~----~~~vssVl~LLHsDLHe~~vv~ALe~LAs~vv~v~P~~~ 215 (265)
.=|+|=||-.-+... ..+.+.+||+.||. +.....++.-++++|-.+..+.-+++++-+++.|+|...
T Consensus 219 lRIvI~SLgSP~wy~~~~~~~~~ll~FL~~LRaLlR~~~~~~v~~iTlP~~l~~~~l~~rle~l~D~vi~L~pF~~ 294 (361)
T 4a8j_A 219 IRIVIPSLLHPAMYPPKMFESSEIIGLMHGVRSLVKKYYERVVLFASISIDIITPPLLVLLRNMFDSVINLEPFNQ 294 (361)
T ss_dssp EEEEETTTTCTTTSCGGGGBHHHHHHHHHHHHHHHHHTTTTEEEEEEEECTTSCHHHHHHHHHHCSEEEEEEECCH
T ss_pred EEEEecCCCCcccCCCcccCHHHHHHHHHHHHHHHhhcCCceEEEEEEChHHcChHHHHHHHHhCcEEEEeeecCC
Confidence 678888876655433 46789999999988 344445666789999999999999999999999999865
No 9
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=89.59 E-value=1.7 Score=38.91 Aligned_cols=65 Identities=12% Similarity=0.157 Sum_probs=37.6
Q ss_pred EEEEEechhHHHHhcC----hHHHHHHHHhhhcC---CceeEEEEeec--cccc----------chhHHHHHHhhheeEE
Q 024646 148 FSIAIDSVSEMVRHAS----ISSVAGILSNLRSH---DQVSSIFWLLH--SDLH----------EIKFTSVLEYLSSMVA 208 (265)
Q Consensus 148 ~~VaIDSLS~LL~h~s----~~~vc~lL~~Lr~~---~~vssVl~LLH--sDLH----------e~~vv~ALe~LAs~vv 208 (265)
..|+||+|..|-...+ ..++...++.|++- -.+ .|+.+-| .+.- .-+-.+++++.|.+++
T Consensus 183 ~lVVID~l~~l~~~~~~~~r~~~i~~~~~~Lk~lAk~~~i-~vi~lsql~r~~e~r~~~~p~l~dlr~sg~ie~~aD~vi 261 (315)
T 3bh0_A 183 VIVMIDYLQLLEPAKANDSRTNQISQISRDLKKMARELDV-VVIALSQLSRQVEQRQDKRPMLSDLRESGQLEQDADIIE 261 (315)
T ss_dssp EEEEEECGGGSBCSCTTSCHHHHHHHHHHHHHHHHHHHTC-EEEEEECCCGGGTTSSSCCCCGGGGTTTSHHHHHCSEEE
T ss_pred eEEEEeCchhcCCCCCCCCHHHHHHHHHHHHHHHHHHhCC-eEEEEeecCcccccCCCCCCCHHHhhhhhhhHhhCCEEE
Confidence 4899999998753211 24555555555441 122 2344433 2221 1123478999999999
Q ss_pred EeeeC
Q 024646 209 SVEPF 213 (265)
Q Consensus 209 ~v~P~ 213 (265)
.+...
T Consensus 262 ~L~r~ 266 (315)
T 3bh0_A 262 FLYRD 266 (315)
T ss_dssp EEEEH
T ss_pred EEecc
Confidence 99753
No 10
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=88.93 E-value=2.3 Score=38.07 Aligned_cols=128 Identities=14% Similarity=0.030 Sum_probs=60.2
Q ss_pred cceeEEEEeeCC--hHHHHHHHhhcCCCccCCCCeEEEEeccCCCCCCcccccCccccccccccccccccchhhhHHHHH
Q 024646 55 SRGLVVVAYSRS--PSFYVDLLKRRGIDIASSHDWIHILDCYTDPLGWKNWLIDKDISQEASSLSSFCQDVRNLDKLYSL 132 (265)
Q Consensus 55 ~~~Vhvl~fe~s--pe~y~~~lk~~G~d~~~~~~~v~i~D~ysDPlgW~~~~~~~~~~~~~s~~~~~~~~v~~L~sl~~~ 132 (265)
+..+..+.+|.+ ++...+.+++.|++.+..-+++.+.+.++ . .++..++..
T Consensus 141 ~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~~----~-----------------------~~~~~~l~~ 193 (324)
T 2z43_A 141 SGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAIN----T-----------------------DHQIAIVDD 193 (324)
T ss_dssp SCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCS----H-----------------------HHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCCC----H-----------------------HHHHHHHHH
Confidence 568999999987 88888888888887532113455554321 0 011111111
Q ss_pred HHHhccCccCCCCCcEEEEEechhHHHHhc-----Ch----HHHHHHHHhhhcC----CceeEEEEeeccccc-------
Q 024646 133 IIEQGKGLIGQGKDRFSIAIDSVSEMVRHA-----SI----SSVAGILSNLRSH----DQVSSIFWLLHSDLH------- 192 (265)
Q Consensus 133 ~~e~~~~~~~~~k~r~~VaIDSLS~LL~h~-----s~----~~vc~lL~~Lr~~----~~vssVl~LLHsDLH------- 192 (265)
+.+..+ ...++ -.|+|||++.+.+.. .. ..+.++++.|++. ....=++.-+..+..
T Consensus 194 l~~~~~---~~~~~-~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~~~~~~~~~~~~~ 269 (324)
T 2z43_A 194 LQELVS---KDPSI-KLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVMARPDMFYGDPT 269 (324)
T ss_dssp HHHHHH---HCTTE-EEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC------------
T ss_pred HHHHHH---hccCC-CEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcceeecCCCcCCCCC
Confidence 111111 00123 689999999998641 11 2356666666652 111111122222222
Q ss_pred chhHHHHHHhhheeEEEeeeC
Q 024646 193 EIKFTSVLEYLSSMVASVEPF 213 (265)
Q Consensus 193 e~~vv~ALe~LAs~vv~v~P~ 213 (265)
.|.--.++++.+++++.+...
T Consensus 270 ~~~gg~~l~~~~d~~l~l~r~ 290 (324)
T 2z43_A 270 VAVGGHTLYHVPGIRIQLKKS 290 (324)
T ss_dssp ------------CEEEEEEEC
T ss_pred CCCchHHHHhhCcEEEEEEEc
Confidence 222334799999999999753
No 11
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=82.20 E-value=11 Score=35.21 Aligned_cols=28 Identities=11% Similarity=0.153 Sum_probs=20.1
Q ss_pred ccceeEEEEeeCChHHHHHHH--hhcCCCc
Q 024646 54 QSRGLVVVAYSRSPSFYVDLL--KRRGIDI 81 (265)
Q Consensus 54 q~~~Vhvl~fe~spe~y~~~l--k~~G~d~ 81 (265)
++..|.++.+|-|++++..-+ ...|++.
T Consensus 228 ~g~~vl~~slE~~~~~l~~R~~~~~~~i~~ 257 (444)
T 2q6t_A 228 EGVGVGIYSLEMPAAQLTLRMMCSEARIDM 257 (444)
T ss_dssp TCCCEEEEESSSCHHHHHHHHHHHHTTCCT
T ss_pred CCCeEEEEECCCCHHHHHHHHHHHHcCCCH
Confidence 467899999999998777632 2346654
No 12
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=80.03 E-value=17 Score=34.28 Aligned_cols=65 Identities=17% Similarity=0.280 Sum_probs=36.5
Q ss_pred EEEEEechhHHHHh----cChHHHHHHHHhhhc---CCceeEEEEeeccc---------------ccchhHHHHHHhhhe
Q 024646 148 FSIAIDSVSEMVRH----ASISSVAGILSNLRS---HDQVSSIFWLLHSD---------------LHEIKFTSVLEYLSS 205 (265)
Q Consensus 148 ~~VaIDSLS~LL~h----~s~~~vc~lL~~Lr~---~~~vssVl~LLHsD---------------LHe~~vv~ALe~LAs 205 (265)
-.|+||+|..|-.. ...+.+...++.|++ .-.+ .|+.+-|-- +..-+-.+++++.|-
T Consensus 356 ~lvVID~l~~l~~~~~~~~~~~~~~~~~~~Lk~lak~~~i-~vi~~~q~~r~~~~~~~~~~~~p~l~dlr~s~~ie~~aD 434 (503)
T 1q57_A 356 DVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGV-VLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSD 434 (503)
T ss_dssp SEEEEECTTCCCSCCSCCCHHHHHHHHHHHHHHHHHHHTC-EEEEEEECCCCSSSSCSTTCCCCCSSSCSSSSHHHHHCS
T ss_pred CEEEEccchhcCCCCCCCCHHHHHHHHHHHHHHHHHHHCC-eEEEEEcCCchhccCccccCCCCChhhhccchHhhecCc
Confidence 48999999876321 112344555555544 1122 233333321 122223578999999
Q ss_pred eEEEeeeC
Q 024646 206 MVASVEPF 213 (265)
Q Consensus 206 ~vv~v~P~ 213 (265)
+++.+...
T Consensus 435 ~vi~l~r~ 442 (503)
T 1q57_A 435 TIIALERN 442 (503)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEeC
Confidence 99999764
No 13
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=79.80 E-value=5.2 Score=32.28 Aligned_cols=127 Identities=12% Similarity=0.211 Sum_probs=67.6
Q ss_pred cccceeEEEEeeC--ChHHHHHHHhhcCCCccCCCCeEEEEeccCCCCCCcccccCccccccccccccccccchhhhHHH
Q 024646 53 SQSRGLVVVAYSR--SPSFYVDLLKRRGIDIASSHDWIHILDCYTDPLGWKNWLIDKDISQEASSLSSFCQDVRNLDKLY 130 (265)
Q Consensus 53 ~q~~~Vhvl~fe~--spe~y~~~lk~~G~d~~~~~~~v~i~D~ysDPlgW~~~~~~~~~~~~~s~~~~~~~~v~~L~sl~ 130 (265)
.++..|.++.+|. +++.+.+.++..|++.+....++.+.+ |.++. ++...+
T Consensus 43 ~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-----------------------~~~~~~ 95 (220)
T 2cvh_A 43 LSGKKVAYVDTEGGFSPERLVQMAETRGLNPEEALSRFILFT----PSDFK-----------------------EQRRVI 95 (220)
T ss_dssp HHCSEEEEEESSCCCCHHHHHHHHHTTTCCHHHHHHHEEEEC----CTTTS-----------------------HHHHHH
T ss_pred HcCCcEEEEECCCCCCHHHHHHHHHhcCCChHHHhhcEEEEe----cCCHH-----------------------HHHHHH
Confidence 3567899999998 888888877766665322112333332 22221 111111
Q ss_pred HHHHHhccCccCCCCCcEEEEEechhHHHHhcCh-----HHH---HHHHHhhhcCCceeEEEEeecc--cc----cchhH
Q 024646 131 SLIIEQGKGLIGQGKDRFSIAIDSVSEMVRHASI-----SSV---AGILSNLRSHDQVSSIFWLLHS--DL----HEIKF 196 (265)
Q Consensus 131 ~~~~e~~~~~~~~~k~r~~VaIDSLS~LL~h~s~-----~~v---c~lL~~Lr~~~~vssVl~LLHs--DL----He~~v 196 (265)
..+... ..+ ++ -+|+||+++.++...+- ..+ .+.|.++.+...+ .|+..-|. +. ..|.-
T Consensus 96 ~~~~~l----~~~-~~-~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~-~vi~~~h~~~~~~~~~~~p~~ 168 (220)
T 2cvh_A 96 GSLKKT----VDS-NF-ALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNI-PVIVINQVHFDSRTEMTKPVA 168 (220)
T ss_dssp HHHHHH----CCT-TE-EEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTC-CEEEEECSSSSCTTSSCCSCC
T ss_pred HHHHHH----hhc-CC-CEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCC-EEEEEeeEEEcCCCCccccCC
Confidence 222121 112 23 68999999998864322 334 4445555432122 24444443 11 11223
Q ss_pred HHHHHhhheeEEEeeeC
Q 024646 197 TSVLEYLSSMVASVEPF 213 (265)
Q Consensus 197 v~ALe~LAs~vv~v~P~ 213 (265)
...+++++..++.+...
T Consensus 169 ~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 169 EQTLGYRCKDILRLDKL 185 (220)
T ss_dssp CHHHHHTSSEEEEEEEC
T ss_pred CcceeecCcEEEEEEEe
Confidence 34899999999999764
No 14
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=78.91 E-value=15 Score=34.68 Aligned_cols=65 Identities=12% Similarity=0.159 Sum_probs=36.9
Q ss_pred EEEEEechhHHHHhc----ChHHHHHHHHhhhc---CCceeEEEEeec--cccc----------chhHHHHHHhhheeEE
Q 024646 148 FSIAIDSVSEMVRHA----SISSVAGILSNLRS---HDQVSSIFWLLH--SDLH----------EIKFTSVLEYLSSMVA 208 (265)
Q Consensus 148 ~~VaIDSLS~LL~h~----s~~~vc~lL~~Lr~---~~~vssVl~LLH--sDLH----------e~~vv~ALe~LAs~vv 208 (265)
+.|+||+|..|-... ..+++....+.|+. .-.| .|+.+-| -+.- .-+-.+++++.|-+++
T Consensus 312 ~lIVID~Lq~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v-~vi~lsql~r~~e~r~~krp~lsdlr~Sg~ieq~aD~Vi 390 (444)
T 3bgw_A 312 VIVMIDYLQLLEPAKANDSRTNQISQISRDLKKMARELDV-VVIALSQLSRQVEQRQDKRPMLSDLRESGQLEQDADIIE 390 (444)
T ss_dssp EEEEEECSTTSBCSCSSSCHHHHHHHHHHHHHHHHHHHTC-EEEEEEECCGGGGGSSCCCCCGGGCCSCSHHHHHCSEEE
T ss_pred eEEEEecHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCC-eEEEEecCCccccccCCCCCchhhhhhhhhHHhhCCEEE
Confidence 589999999864221 12345555555543 2122 2444444 1111 1123368999999999
Q ss_pred EeeeC
Q 024646 209 SVEPF 213 (265)
Q Consensus 209 ~v~P~ 213 (265)
.+...
T Consensus 391 ~L~r~ 395 (444)
T 3bgw_A 391 FLYRD 395 (444)
T ss_dssp ECCBG
T ss_pred EEecc
Confidence 99753
No 15
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=76.68 E-value=15 Score=33.96 Aligned_cols=120 Identities=12% Similarity=0.156 Sum_probs=63.5
Q ss_pred ccceeEEEEeeCChHHHHHHHhhcCCCccCCCCeEEEEeccCCCCCCcccccCccccccccccccccccchhhhHHHHHH
Q 024646 54 QSRGLVVVAYSRSPSFYVDLLKRRGIDIASSHDWIHILDCYTDPLGWKNWLIDKDISQEASSLSSFCQDVRNLDKLYSLI 133 (265)
Q Consensus 54 q~~~Vhvl~fe~spe~y~~~lk~~G~d~~~~~~~v~i~D~ysDPlgW~~~~~~~~~~~~~s~~~~~~~~v~~L~sl~~~~ 133 (265)
++..|.++.+|.+++... +++.|+|. .++.+.| |.. ..++...+...
T Consensus 101 ~g~~vlyi~~E~s~~~~~--a~~~g~d~----~~l~i~~----~~~-----------------------~e~~l~~l~~l 147 (366)
T 1xp8_A 101 AGGTCAFIDAEHALDPVY--ARALGVNT----DELLVSQ----PDN-----------------------GEQALEIMELL 147 (366)
T ss_dssp TTCCEEEEESSCCCCHHH--HHHTTCCG----GGCEEEC----CSS-----------------------HHHHHHHHHHH
T ss_pred CCCeEEEEECCCChhHHH--HHHcCCCH----HHceeec----CCc-----------------------HHHHHHHHHHH
Confidence 467899999998877653 46667763 3455443 321 11222221222
Q ss_pred HHhccCccCCCCCcEEEEEechhHHHHhcC-----------h--HHHHHHHHhhhc----CCceeEEEEeecc-------
Q 024646 134 IEQGKGLIGQGKDRFSIAIDSVSEMVRHAS-----------I--SSVAGILSNLRS----HDQVSSIFWLLHS------- 189 (265)
Q Consensus 134 ~e~~~~~~~~~k~r~~VaIDSLS~LL~h~s-----------~--~~vc~lL~~Lr~----~~~vssVl~LLHs------- 189 (265)
.. ..+. -.|+||||+.+..+.. . ..+.+.|+.|.. .....=++.-+..
T Consensus 148 ~~-------~~~~-~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~nq~~~~~~~~fg 219 (366)
T 1xp8_A 148 VR-------SGAI-DVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQVREKIGVMYG 219 (366)
T ss_dssp HT-------TTCC-SEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEEC---------
T ss_pred Hh-------cCCC-CEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEEecccccCcccC
Confidence 22 1223 4899999999873211 1 236777777743 3322212222222
Q ss_pred cccchhHHHHHHhhheeEEEeeeCC
Q 024646 190 DLHEIKFTSVLEYLSSMVASVEPFN 214 (265)
Q Consensus 190 DLHe~~vv~ALe~LAs~vv~v~P~~ 214 (265)
|-..+.--.++++.|++++.+.-..
T Consensus 220 ~p~~~~gg~al~~~a~~rl~L~r~~ 244 (366)
T 1xp8_A 220 NPETTTGGRALKFYASVRLDVRKIG 244 (366)
T ss_dssp ------CHHHHHHHCSEEEEEEEES
T ss_pred CccccCCcchhhheeeEEEEEEecc
Confidence 2122333568999999999997543
No 16
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=75.55 E-value=2.5 Score=47.96 Aligned_cols=118 Identities=14% Similarity=0.203 Sum_probs=69.1
Q ss_pred cccceeEEEEeeCChHHHHHHHhhcCCCccCCCCeEEEEeccCCCCCCcccccCccccccccccccccccchhhhHHHHH
Q 024646 53 SQSRGLVVVAYSRSPSFYVDLLKRRGIDIASSHDWIHILDCYTDPLGWKNWLIDKDISQEASSLSSFCQDVRNLDKLYSL 132 (265)
Q Consensus 53 ~q~~~Vhvl~fe~spe~y~~~lk~~G~d~~~~~~~v~i~D~ysDPlgW~~~~~~~~~~~~~s~~~~~~~~v~~L~sl~~~ 132 (265)
.+++.+..+.+|.+++..+ ++..|+|. +++.+. +|. . ..++..++..
T Consensus 60 ~~Ge~vlYI~tEes~~~~r--a~~lG~dl----~~i~v~----~p~-----~------------------~e~ll~il~~ 106 (2050)
T 3cmu_A 60 REGKTCAFIDAEHALDPIY--ARKLGVDI----DNLLCS----QPD-----T------------------GEQALEICDA 106 (2050)
T ss_dssp TTTCCEEEECTTSCCCHHH--HHHTTCCT----TTCEEE----CCS-----S------------------HHHHHHHHHH
T ss_pred ccCCceEEEEccCcchhhH--HhhhccCc----ccceec----CCC-----c------------------HHHHHHHHHH
Confidence 3578999999999988877 46678774 334433 341 0 1122233333
Q ss_pred HHHhccCccCCCCCcEEEEEechhHHHHhcCh-------------HHHHHHHHhhhc----CCceeEEEE--------ee
Q 024646 133 IIEQGKGLIGQGKDRFSIAIDSVSEMVRHASI-------------SSVAGILSNLRS----HDQVSSIFW--------LL 187 (265)
Q Consensus 133 ~~e~~~~~~~~~k~r~~VaIDSLS~LL~h~s~-------------~~vc~lL~~Lr~----~~~vssVl~--------LL 187 (265)
+.+.. ++ -.|+||||+.+.+.... ..+-+++..|.+ +. +.-|+. ..
T Consensus 107 L~~~~-------~~-~lVVIDSISaL~~~~e~~~e~~d~~~~~raR~l~~~l~~L~~~ak~~g-itVVlTNQv~~~~g~~ 177 (2050)
T 3cmu_A 107 LARSG-------AV-DVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSN-TLLIFINQIRMKIGVM 177 (2050)
T ss_dssp HHHHT-------CC-SEEEESCGGGCCCHHHHHSCSSSCCTTHHHHHHHHHHHHHHHHHHTTT-CEEEEEECCEECTTCC
T ss_pred HHhcc-------CC-cEEEEcChHHhhhhcccccccccchhhHHHHHHHHHHHHHHHHHHHhC-CeEEEEEecccccccc
Confidence 33321 22 48999999998875321 123344444443 32 222211 12
Q ss_pred cccccchhHHHHHHhhheeEEEeee
Q 024646 188 HSDLHEIKFTSVLEYLSSMVASVEP 212 (265)
Q Consensus 188 HsDLHe~~vv~ALe~LAs~vv~v~P 212 (265)
+++-+.+..-.+++|++.+++.++-
T Consensus 178 fg~~~~~~gG~~l~~iaD~VI~L~r 202 (2050)
T 3cmu_A 178 FGNPETTTGGNALKFYASVRLDIRR 202 (2050)
T ss_dssp SSCCEECSSHHHHHHHEEEEEEEEE
T ss_pred cCcccccCCcchhhhhCcEEEEEEe
Confidence 3445667778899999999999964
No 17
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=70.80 E-value=22 Score=32.08 Aligned_cols=39 Identities=13% Similarity=0.192 Sum_probs=27.5
Q ss_pred ccceeEEEEeeCC--hHHHHHHHhhcCCCccCCCCeEEEEe
Q 024646 54 QSRGLVVVAYSRS--PSFYVDLLKRRGIDIASSHDWIHILD 92 (265)
Q Consensus 54 q~~~Vhvl~fe~s--pe~y~~~lk~~G~d~~~~~~~v~i~D 92 (265)
++..+..+.+|.+ ++...+.+++.|++.+..-+++.+.+
T Consensus 155 ~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~ 195 (343)
T 1v5w_A 155 PGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYAR 195 (343)
T ss_dssp CCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEee
Confidence 4678999999996 88888888888887532113455544
No 18
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=69.61 E-value=29 Score=32.33 Aligned_cols=66 Identities=18% Similarity=0.172 Sum_probs=38.4
Q ss_pred EEEEEechhHHHHhc-----ChHHHHHHHHhhhc---CCceeEEEEeec--ccc----------cchhHHHHHHhhheeE
Q 024646 148 FSIAIDSVSEMVRHA-----SISSVAGILSNLRS---HDQVSSIFWLLH--SDL----------HEIKFTSVLEYLSSMV 207 (265)
Q Consensus 148 ~~VaIDSLS~LL~h~-----s~~~vc~lL~~Lr~---~~~vssVl~LLH--sDL----------He~~vv~ALe~LAs~v 207 (265)
-.|+||++..+.... ..+.+..+++.|+. .-.+ .|+.+-| .+. ..-+-.+++++.|.++
T Consensus 315 ~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i-~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~v 393 (454)
T 2r6a_A 315 GMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEV-PVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIV 393 (454)
T ss_dssp CEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTC-CEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEE
T ss_pred CEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCC-eEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEE
Confidence 489999999987421 33444444444443 2122 3555555 111 1112235899999999
Q ss_pred EEeeeCC
Q 024646 208 ASVEPFN 214 (265)
Q Consensus 208 v~v~P~~ 214 (265)
+.+....
T Consensus 394 i~l~r~~ 400 (454)
T 2r6a_A 394 AFLYRDD 400 (454)
T ss_dssp EEEEETT
T ss_pred EEEeccc
Confidence 9997543
No 19
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=62.12 E-value=31 Score=28.10 Aligned_cols=139 Identities=14% Similarity=0.033 Sum_probs=69.1
Q ss_pred cccceeEEEEeeCChHHHHHHHhhcCCCccC--CCCeEEEEeccCCCCCCcccccCccccccccccccccccchhhhHHH
Q 024646 53 SQSRGLVVVAYSRSPSFYVDLLKRRGIDIAS--SHDWIHILDCYTDPLGWKNWLIDKDISQEASSLSSFCQDVRNLDKLY 130 (265)
Q Consensus 53 ~q~~~Vhvl~fe~spe~y~~~lk~~G~d~~~--~~~~v~i~D~ysDPlgW~~~~~~~~~~~~~s~~~~~~~~v~~L~sl~ 130 (265)
.++.++.++..+.+++...+.+++.|++... ...++.+.|.+..+.+...... .... ...++..+.
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~-~~~~~~~~~ 124 (251)
T 2ehv_A 57 EYGEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSSVVGLPSEEK-----------FVLE-DRFNVDNFL 124 (251)
T ss_dssp HHCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC-------------------------------CCHHHHH
T ss_pred hCCCeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEEEEEccccccccccccc-----------eecc-CcccHHHHH
Confidence 3567888999999998888878877776443 1346888888776543211000 0000 001122221
Q ss_pred HHHHHhccCccCCCCCcEEEEEechhHHHH-----hcChHHHHHHHHhhhcCCceeEEEEeecccccch---hHHHHHHh
Q 024646 131 SLIIEQGKGLIGQGKDRFSIAIDSVSEMVR-----HASISSVAGILSNLRSHDQVSSIFWLLHSDLHEI---KFTSVLEY 202 (265)
Q Consensus 131 ~~~~e~~~~~~~~~k~r~~VaIDSLS~LL~-----h~s~~~vc~lL~~Lr~~~~vssVl~LLHsDLHe~---~vv~ALe~ 202 (265)
....+... ..++ -.|++|..+.++. ...-..+..++..+++.. ..|+..-|. +.+. .....+++
T Consensus 125 ~~~~~~l~----~~~p-~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g--~tii~vtH~-~~~~~~~~~~~~i~~ 196 (251)
T 2ehv_A 125 RYIYRVVK----AINA-KRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMG--VTTILTTEA-PDPQHGKLSRYGIEE 196 (251)
T ss_dssp HHHHHHHH----HTTC-SEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHC--CEEEEEECC-C----CCSSSSSCGG
T ss_pred HHHHHHHH----hhCC-CEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCC--CeEEEEECC-CCCCcccccccChhh
Confidence 22211110 1233 4799999999997 333334777888886532 234444443 3221 11123467
Q ss_pred hh-eeEEEee
Q 024646 203 LS-SMVASVE 211 (265)
Q Consensus 203 LA-s~vv~v~ 211 (265)
++ ..++.+.
T Consensus 197 ~~aD~vi~l~ 206 (251)
T 2ehv_A 197 FIARGVIVLD 206 (251)
T ss_dssp GGCSEEEEEE
T ss_pred EeeeEEEEEe
Confidence 77 7777774
No 20
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=56.61 E-value=30 Score=28.11 Aligned_cols=27 Identities=11% Similarity=0.169 Sum_probs=20.8
Q ss_pred cceeEEEEeeC--ChHHHHHHHhhcCCCc
Q 024646 55 SRGLVVVAYSR--SPSFYVDLLKRRGIDI 81 (265)
Q Consensus 55 ~~~Vhvl~fe~--spe~y~~~lk~~G~d~ 81 (265)
..++..+..+. +++...+.+++.|+++
T Consensus 58 ~~~~~~i~~~~~~~~~~~~~~~~~~g~~~ 86 (243)
T 1n0w_A 58 EGKAMYIDTEGTFRPERLLAVAERYGLSG 86 (243)
T ss_dssp SSEEEEEESSSCCCHHHHHHHHHHTTCCH
T ss_pred CCeEEEEECCCCcCHHHHHHHHHHcCCCH
Confidence 57888888888 4777777778787764
No 21
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=53.91 E-value=29 Score=31.85 Aligned_cols=65 Identities=12% Similarity=0.196 Sum_probs=33.7
Q ss_pred EEEEEechhHHHHhcC-----------hH--HHHHHHHhhhc----CCceeEEEEeecccccc----h-hH--HHHHHhh
Q 024646 148 FSIAIDSVSEMVRHAS-----------IS--SVAGILSNLRS----HDQVSSIFWLLHSDLHE----I-KF--TSVLEYL 203 (265)
Q Consensus 148 ~~VaIDSLS~LL~h~s-----------~~--~vc~lL~~Lr~----~~~vssVl~LLHsDLHe----~-~v--v~ALe~L 203 (265)
-.|+|||++.+..... .+ .+.+.|+.|.. .....=++.-+..+... | .+ -.+|++.
T Consensus 143 ~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~a~~~~~~VI~~nq~~~~~~~~fg~~~~~~gG~~l~~~ 222 (356)
T 1u94_A 143 DVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFY 222 (356)
T ss_dssp SEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHHTCEEEEEEC--------------CTTCSHHHHH
T ss_pred CEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCcccCCCcceeee
Confidence 4899999998863211 22 45677777753 22211122222222211 1 11 1389999
Q ss_pred heeEEEeee
Q 024646 204 SSMVASVEP 212 (265)
Q Consensus 204 As~vv~v~P 212 (265)
|++++.+.-
T Consensus 223 advrl~l~r 231 (356)
T 1u94_A 223 ASVRLDIRR 231 (356)
T ss_dssp CSEEEEEEE
T ss_pred ccEEEEEEE
Confidence 999988754
No 22
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=52.10 E-value=14 Score=41.24 Aligned_cols=119 Identities=13% Similarity=0.168 Sum_probs=66.7
Q ss_pred cccceeEEEEeeCChHHHHHHHhhcCCCccCCCCeEEEEeccCCCCCCcccccCccccccccccccccccchhhhHHHHH
Q 024646 53 SQSRGLVVVAYSRSPSFYVDLLKRRGIDIASSHDWIHILDCYTDPLGWKNWLIDKDISQEASSLSSFCQDVRNLDKLYSL 132 (265)
Q Consensus 53 ~q~~~Vhvl~fe~spe~y~~~lk~~G~d~~~~~~~v~i~D~ysDPlgW~~~~~~~~~~~~~s~~~~~~~~v~~L~sl~~~ 132 (265)
.+++.|..+.++.+++... +++.|+|. +++.+. +|. . ..++..++..
T Consensus 60 ~~G~~vlYI~te~~~~~l~--~~~lg~dl----~~i~i~----~p~-----t------------------~e~l~~ll~~ 106 (1706)
T 3cmw_A 60 REGKTCAFIDAEHALDPIY--ARKLGVDI----DNLLCS----QPD-----T------------------GEQALEICDA 106 (1706)
T ss_dssp HTTCCEEEECTTSCCCHHH--HHHTTCCG----GGCEEE----CCS-----S------------------HHHHHHHHHH
T ss_pred hCCCceEEEEecCccHHHH--HHhhccCc----cceeee----ccC-----c------------------HHHHHHHHHH
Confidence 3578899999999988776 45667763 334433 231 0 1223333333
Q ss_pred HHHhccCccCCCCCcEEEEEechhHHHHhcChH-------------HHHHHHHhhhc----CCceeEEEEee-------c
Q 024646 133 IIEQGKGLIGQGKDRFSIAIDSVSEMVRHASIS-------------SVAGILSNLRS----HDQVSSIFWLL-------H 188 (265)
Q Consensus 133 ~~e~~~~~~~~~k~r~~VaIDSLS~LL~h~s~~-------------~vc~lL~~Lr~----~~~vssVl~LL-------H 188 (265)
+.+.. ++ -.|+||||+.+.+..... .+.+++..|.+ +....=+...+ -
T Consensus 107 L~~~~-------~~-~LVVIDSLt~L~~~~e~e~~~~~~~~~~~~r~~~~ll~~L~~~ake~~~tVIvTNqv~s~~g~~f 178 (1706)
T 3cmw_A 107 LARSG-------AV-DVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMF 178 (1706)
T ss_dssp HHHHT-------CC-SEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEEECTTCCS
T ss_pred HHhcc-------CC-CEEEEcchhhhccccccccccccchhHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeccccccccc
Confidence 33321 22 589999999988764211 23444444443 33221111111 1
Q ss_pred ccccchhHHHHHHhhheeEEEeee
Q 024646 189 SDLHEIKFTSVLEYLSSMVASVEP 212 (265)
Q Consensus 189 sDLHe~~vv~ALe~LAs~vv~v~P 212 (265)
+|-+.+..-..++|.+.+++.++-
T Consensus 179 gd~~~a~~g~~l~h~ad~~I~L~r 202 (1706)
T 3cmw_A 179 GNPETTTGGNALKFYASVRLDIRR 202 (1706)
T ss_dssp SCCEEESSCSHHHHHEEEEEEEEE
T ss_pred CccccccCcchhhhhCCEEEEEEe
Confidence 233445556799999999999963
No 23
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=46.79 E-value=61 Score=29.43 Aligned_cols=64 Identities=17% Similarity=0.264 Sum_probs=36.6
Q ss_pred EEEEEechhHHHHhc-----------ChH--HHHHHHHhhhc----CCceeEEEEeec--ccc-------cchhHHHHHH
Q 024646 148 FSIAIDSVSEMVRHA-----------SIS--SVAGILSNLRS----HDQVSSIFWLLH--SDL-------HEIKFTSVLE 201 (265)
Q Consensus 148 ~~VaIDSLS~LL~h~-----------s~~--~vc~lL~~Lr~----~~~vssVl~LLH--sDL-------He~~vv~ALe 201 (265)
-.|+|||++.++.+. +.+ .+.+.|+.|.. ... .|+..-| .+. ..+.--.+|+
T Consensus 141 ~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~--tVI~inh~~~~~~~~~~~p~~~~gg~~l~ 218 (349)
T 2zr9_A 141 DIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGT--TAIFINELREKIGVMFGSPETTTGGKALK 218 (349)
T ss_dssp SEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTC--EEEEEEECC-----------CCSSHHHHH
T ss_pred CEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCC--EEEEEeccccccCcccCCCcccCCchHhh
Confidence 489999999987311 122 45677777742 222 2333333 111 1122246899
Q ss_pred hhheeEEEeeeC
Q 024646 202 YLSSMVASVEPF 213 (265)
Q Consensus 202 ~LAs~vv~v~P~ 213 (265)
+.|++.+.+.-.
T Consensus 219 ~~ad~~l~lrr~ 230 (349)
T 2zr9_A 219 FYASVRLDVRRI 230 (349)
T ss_dssp HHCSEEEEEEEE
T ss_pred hccceEEEEEEe
Confidence 999999988543
No 24
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=44.94 E-value=19 Score=40.26 Aligned_cols=133 Identities=11% Similarity=0.132 Sum_probs=73.0
Q ss_pred chhhHHHHHHHHHHHHHHhhccccceeEEEEeeCChHHHHHHHhhcCCCccCCCCeEEEEeccCCCCCCcccccCccccc
Q 024646 32 FGFDVFNYVLTQLSNYILAGKSQSRGLVVVAYSRSPSFYVDLLKRRGIDIASSHDWIHILDCYTDPLGWKNWLIDKDISQ 111 (265)
Q Consensus 32 ~g~~~~~h~~~~l~s~i~a~~~q~~~Vhvl~fe~spe~y~~~lk~~G~d~~~~~~~v~i~D~ysDPlgW~~~~~~~~~~~ 111 (265)
+=+.+..|++.. ...++..+.++.+|-+++... .++.|+|. +++.+.| |-.+
T Consensus 395 GKTtLaLq~a~~-------~~~~G~~vlyis~E~s~~~~~--a~~lGvd~----~~L~i~~----~~~~----------- 446 (1706)
T 3cmw_A 395 GKTTLTLQVIAA-------AQREGKTCAFIDAEHALDPIY--ARKLGVDI----DNLLCSQ----PDTG----------- 446 (1706)
T ss_dssp SHHHHHHHHHHH-------HHHTTCCEEEECTTSCCCHHH--HHHTTCCG----GGCEEEC----CSSH-----------
T ss_pred CHHHHHHHHHHH-------HHHhCCCeEEEEccCchHHHH--HHHcCCCH----HHeEEcC----CCCH-----------
Confidence 445555554432 223578899999999988764 57778874 3455433 2211
Q ss_pred cccccccccccchhhhHHHHHHHHhccCccCCCCCcEEEEEechhHHHHhc-------------ChHHHHHHHHhhhc--
Q 024646 112 EASSLSSFCQDVRNLDKLYSLIIEQGKGLIGQGKDRFSIAIDSVSEMVRHA-------------SISSVAGILSNLRS-- 176 (265)
Q Consensus 112 ~~s~~~~~~~~v~~L~sl~~~~~e~~~~~~~~~k~r~~VaIDSLS~LL~h~-------------s~~~vc~lL~~Lr~-- 176 (265)
.++.......++. .++ -.|+||||+.|.... ....+.+.|+.|..
T Consensus 447 ------------e~~l~~l~~lv~~-------~~~-~lVVIDSL~al~~~~e~e~~~g~~~~~~q~r~~s~~Lr~L~~~a 506 (1706)
T 3cmw_A 447 ------------EQALEICDALARS-------GAV-DVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 506 (1706)
T ss_dssp ------------HHHHHHHHHHHHH-------TCC-SEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHH
T ss_pred ------------HHHHHHHHHHHHh-------cCC-CEEEECCHHHhhccccccccccccchhHHHHHHHHHHHHHHHHH
Confidence 1222221222221 233 489999999987321 11245677777743
Q ss_pred --CCceeEEEEeecccc-------cchhHHHHHHhhheeEEEeee
Q 024646 177 --HDQVSSIFWLLHSDL-------HEIKFTSVLEYLSSMVASVEP 212 (265)
Q Consensus 177 --~~~vssVl~LLHsDL-------He~~vv~ALe~LAs~vv~v~P 212 (265)
.....=++.-++.+. +.|.--++|++.|.+++.|.-
T Consensus 507 k~~~v~VI~inQl~~~vg~~fg~~~~p~gg~ale~~ADv~L~L~R 551 (1706)
T 3cmw_A 507 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRR 551 (1706)
T ss_dssp HHHTCEEEEEECEEECTTCCSSCCEEESSCSHHHHHEEEEEEEEE
T ss_pred HHcCCEEEEEeecccccccccCCCccCCCCcceeeeCCEEEEEEe
Confidence 232222222233331 122224799999999998854
No 25
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=41.76 E-value=1.2e+02 Score=34.71 Aligned_cols=118 Identities=12% Similarity=0.161 Sum_probs=67.1
Q ss_pred ccceeEEEEeeCChHHHHHHHhhcCCCccCCCCeEEEEeccCCCCCCcccccCccccccccccccccccchhhhHHHHHH
Q 024646 54 QSRGLVVVAYSRSPSFYVDLLKRRGIDIASSHDWIHILDCYTDPLGWKNWLIDKDISQEASSLSSFCQDVRNLDKLYSLI 133 (265)
Q Consensus 54 q~~~Vhvl~fe~spe~y~~~lk~~G~d~~~~~~~v~i~D~ysDPlgW~~~~~~~~~~~~~s~~~~~~~~v~~L~sl~~~~ 133 (265)
++..|.++.+|-+.+... .++.|+|. +++.+.| |..+ .++.......
T Consensus 410 ~G~~vlyis~E~s~~~~~--a~~lGvd~----~~L~I~~----~~~~-----------------------e~il~~~~~l 456 (2050)
T 3cmu_A 410 EGKTCAFIDAEHALDPIY--ARKLGVDI----DNLLCSQ----PDTG-----------------------EQALEICDAL 456 (2050)
T ss_dssp TTCCEEEECTTSCCCHHH--HHHTTCCT----TTCEEEC----CSSH-----------------------HHHHHHHHHH
T ss_pred cCCeEEEEEcCCCHHHHH--HHHcCCCH----HHeEEeC----CCCH-----------------------HHHHHHHHHH
Confidence 467899999999988664 67778873 4455543 3211 1222221222
Q ss_pred HHhccCccCCCCCcEEEEEechhHHHHhc------C-------hHHHHHHHHhhh----cCCceeEEEEeecccc-----
Q 024646 134 IEQGKGLIGQGKDRFSIAIDSVSEMVRHA------S-------ISSVAGILSNLR----SHDQVSSIFWLLHSDL----- 191 (265)
Q Consensus 134 ~e~~~~~~~~~k~r~~VaIDSLS~LL~h~------s-------~~~vc~lL~~Lr----~~~~vssVl~LLHsDL----- 191 (265)
+.. .++ -+|+||||..|..+. + ...+.+.|+.|. ......=++.-++.+.
T Consensus 457 v~~-------~~~-~lIVIDSL~al~~~~e~eg~~Gd~~~~~q~R~is~~Lr~L~~lake~~i~VIlinQl~~~vg~~~g 528 (2050)
T 3cmu_A 457 ARS-------GAV-DVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFG 528 (2050)
T ss_dssp HHH-------TCC-SEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECTTCCSS
T ss_pred HHh-------cCC-cEEEECCHHHhhcccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCeEEEEeecccccccccC
Confidence 221 233 489999999887311 1 124677888884 3333222223343332
Q ss_pred --cchhHHHHHHhhheeEEEeee
Q 024646 192 --HEIKFTSVLEYLSSMVASVEP 212 (265)
Q Consensus 192 --He~~vv~ALe~LAs~vv~v~P 212 (265)
..|.=-.++++.|++++.+.-
T Consensus 529 ~p~~psGg~ale~~ADv~l~L~R 551 (2050)
T 3cmu_A 529 NPETTTGGNALKFYASVRLDIRR 551 (2050)
T ss_dssp CCEECSSHHHHHHHEEEEEEEEE
T ss_pred CCcCCCCcchhhhhCCEEEEEEe
Confidence 222334589999999998854
No 26
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=30.41 E-value=1.4e+02 Score=27.80 Aligned_cols=65 Identities=14% Similarity=0.096 Sum_probs=35.9
Q ss_pred EEEEEechhHHHHhcC-----h-------HHHHHHHHhhhcCCceeEEEEeecc--cc----------cchhHHHHHHhh
Q 024646 148 FSIAIDSVSEMVRHAS-----I-------SSVAGILSNLRSHDQVSSIFWLLHS--DL----------HEIKFTSVLEYL 203 (265)
Q Consensus 148 ~~VaIDSLS~LL~h~s-----~-------~~vc~lL~~Lr~~~~vssVl~LLHs--DL----------He~~vv~ALe~L 203 (265)
-.|+||+++.++...- + ..+.+.|..|.+... ..||..-|- .. ..|---..++|+
T Consensus 275 ~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~g-itVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ 353 (400)
T 3lda_A 275 SLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFG-VAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYS 353 (400)
T ss_dssp EEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHC-CEEEEEEEC--------------------CHHHHH
T ss_pred ceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcC-CEEEEEEeecccCCccccccCCCccCCchhHHHHh
Confidence 5788999999876421 1 344555555543212 234444453 11 112123678999
Q ss_pred heeEEEeeeC
Q 024646 204 SSMVASVEPF 213 (265)
Q Consensus 204 As~vv~v~P~ 213 (265)
+.+++.+.-.
T Consensus 354 ad~vl~L~~~ 363 (400)
T 3lda_A 354 STTRLGFKKG 363 (400)
T ss_dssp CSEEEEEEEC
T ss_pred cceEEEEEec
Confidence 9999999764
No 27
>4dm9_A Ubiquitin carboxyl-terminal hydrolase isozyme L1; ubiquitin hydrolase, ligase, hydrolase, ligase-inhibitor COM; HET: PHQ GME; 2.35A {Homo sapiens} PDB: 3kw5_A 2etl_A* 3irt_A 3kvf_A 3ifw_A 2len_A
Probab=29.56 E-value=38 Score=29.74 Aligned_cols=32 Identities=16% Similarity=0.287 Sum_probs=26.9
Q ss_pred EEeeCChHHHHHHHhhcCCCccCCCCeEEEEeccC-CC
Q 024646 61 VAYSRSPSFYVDLLKRRGIDIASSHDWIHILDCYT-DP 97 (265)
Q Consensus 61 l~fe~spe~y~~~lk~~G~d~~~~~~~v~i~D~ys-DP 97 (265)
+-+|..|+.|.+++++-|+. ..+.++|.|+ ||
T Consensus 9 ~pLESnP~Vft~l~~~LGv~-----~~~~f~DVysLD~ 41 (228)
T 4dm9_A 9 KPMEINPEMLNKVLSRLGVA-----GQWRFVDVLGLEE 41 (228)
T ss_dssp CCCCCSHHHHHHHHHHTTBC-----SSEEEEEECCSSH
T ss_pred eeccCCHHHHHHHHHHcCCC-----CceEEEEeecCCH
Confidence 44799999999999999994 3589999998 44
No 28
>1cmx_A Protein (ubiquitin YUH1-UBAL); ubiquitin hydrolase, deubiquitinating enzyme, cysteine protease, enzyme specificity; 2.25A {Synthetic} SCOP: d.3.1.6
Probab=27.11 E-value=46 Score=29.44 Aligned_cols=31 Identities=19% Similarity=0.472 Sum_probs=26.7
Q ss_pred EEEeeCChHHHHHHHhhcCCCccCCCCeEEEEeccC
Q 024646 60 VVAYSRSPSFYVDLLKRRGIDIASSHDWIHILDCYT 95 (265)
Q Consensus 60 vl~fe~spe~y~~~lk~~G~d~~~~~~~v~i~D~ys 95 (265)
.+-+|..|+.|.+++++-|+. ..+.++|.|+
T Consensus 8 w~plESnP~Vft~l~~~lGv~-----~~~~f~DVys 38 (235)
T 1cmx_A 8 VVPIESNPEVFTNFAHKLGLK-----NEWAYFDIYS 38 (235)
T ss_dssp CCCEECCHHHHHHHHHHHTBC-----TTEEEEEECC
T ss_pred eeeecCCHHHHHHHHHHcCCC-----CCcEEEEccc
Confidence 345799999999999999993 4689999998
No 29
>1xd3_A Ubiquitin carboxyl-terminal esterase L3; enzyme-ligand complex, active site crossover loop, hydrolase; HET: GVE; 1.45A {Homo sapiens} SCOP: d.3.1.6 PDB: 1uch_A*
Probab=25.21 E-value=52 Score=28.85 Aligned_cols=33 Identities=24% Similarity=0.452 Sum_probs=27.4
Q ss_pred EEEeeCChHHHHHHHhhcCCCccCCCCeEEEEeccC-CC
Q 024646 60 VVAYSRSPSFYVDLLKRRGIDIASSHDWIHILDCYT-DP 97 (265)
Q Consensus 60 vl~fe~spe~y~~~lk~~G~d~~~~~~~v~i~D~ys-DP 97 (265)
.+-+|..|+.|.+++++-|+. ..+.++|.|+ ||
T Consensus 6 w~plESnP~Vft~l~~~lGv~-----~~~~f~DVysld~ 39 (230)
T 1xd3_A 6 WLPLEANPEVTNQFLKQLGLH-----PNWQFVDVYGMDP 39 (230)
T ss_dssp CCCCBCCHHHHHHHHHHTTBC-----TTEEEEECCCSSH
T ss_pred cccccCCHHHHHHHHHHcCCC-----ceEEEEEeccCCH
Confidence 345799999999999999995 3489999998 44
No 30
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=24.42 E-value=3.3e+02 Score=24.86 Aligned_cols=18 Identities=17% Similarity=0.176 Sum_probs=15.0
Q ss_pred hHHHHHHhhheeEEEeee
Q 024646 195 KFTSVLEYLSSMVASVEP 212 (265)
Q Consensus 195 ~vv~ALe~LAs~vv~v~P 212 (265)
-=-.+|+|.+++++.++-
T Consensus 212 ~GG~~l~h~~~~rl~l~k 229 (356)
T 3hr8_A 212 TGGLALKFYATMRMEVRR 229 (356)
T ss_dssp THHHHHHHHCSEEEEEEE
T ss_pred CCcchhhhhCcEEEEEEe
Confidence 336789999999999975
No 31
>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}
Probab=22.48 E-value=66 Score=23.59 Aligned_cols=24 Identities=13% Similarity=0.292 Sum_probs=19.3
Q ss_pred ChHHHHHHHhhcCCCccCCCCeEEEEeccCC
Q 024646 66 SPSFYVDLLKRRGIDIASSHDWIHILDCYTD 96 (265)
Q Consensus 66 spe~y~~~lk~~G~d~~~~~~~v~i~D~ysD 96 (265)
+.++|.+.++.. .++++++|+|++
T Consensus 7 ~~~~f~~~l~~~-------~~k~vvv~F~a~ 30 (105)
T 3zzx_A 7 DQEDFTKQLNEA-------GNKLVVIDFYAT 30 (105)
T ss_dssp SHHHHHHHHHHT-------TTSEEEEEEECT
T ss_pred CHHHHHHHHHhc-------CCCEEEEEEECC
Confidence 577888877755 568999999985
No 32
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=21.77 E-value=65 Score=27.53 Aligned_cols=66 Identities=18% Similarity=0.215 Sum_probs=33.7
Q ss_pred EEEEEechhHHHHh-------cChHHHHHHHHhhhcCCceeEEEEeeccc-ccc--------------hhHHHHHHhhhe
Q 024646 148 FSIAIDSVSEMVRH-------ASISSVAGILSNLRSHDQVSSIFWLLHSD-LHE--------------IKFTSVLEYLSS 205 (265)
Q Consensus 148 ~~VaIDSLS~LL~h-------~s~~~vc~lL~~Lr~~~~vssVl~LLHsD-LHe--------------~~vv~ALe~LAs 205 (265)
-+|+||.+..++.. .....+.+.|..|.+...+ .|+..-|-- ..+ -+-.+.++++|.
T Consensus 149 ~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~~~~-~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD 227 (296)
T 1cr0_A 149 DVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGV-VLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSD 227 (296)
T ss_dssp SEEEEEEEC-----------CHHHHHHHHHHHHHHHHHCC-EEEEEEECC-----------------CCC---CHHHHCS
T ss_pred CEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHHhCC-eEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCc
Confidence 48999999997743 2223455666666432122 345454542 121 112347899999
Q ss_pred eEEEeeeCC
Q 024646 206 MVASVEPFN 214 (265)
Q Consensus 206 ~vv~v~P~~ 214 (265)
.++.+....
T Consensus 228 ~vi~L~~~~ 236 (296)
T 1cr0_A 228 TIIALERNQ 236 (296)
T ss_dssp EEEEEEEC-
T ss_pred EEEEEecCc
Confidence 999997654
No 33
>4b5o_A Alpha-tubulin N-acetyltransferase; microtubules, cilium, intraflagellar transport; HET: ACO; 1.05A {Homo sapiens} PDB: 4b5p_A*
Probab=21.62 E-value=34 Score=29.91 Aligned_cols=56 Identities=13% Similarity=0.328 Sum_probs=36.2
Q ss_pred chhhHHHHHHHHHHHHHHhhccccceeEEEEeeCChHHHHHHHhh-cCCCccC--CCCeEEEEeccCCC
Q 024646 32 FGFDVFNYVLTQLSNYILAGKSQSRGLVVVAYSRSPSFYVDLLKR-RGIDIAS--SHDWIHILDCYTDP 97 (265)
Q Consensus 32 ~g~~~~~h~~~~l~s~i~a~~~q~~~Vhvl~fe~spe~y~~~lk~-~G~d~~~--~~~~v~i~D~ysDP 97 (265)
-|-.+|.|.+.. ..-..+=+|+|+|-.-++.+|++ +|+...+ .|+=+++-++|.||
T Consensus 139 ~Gk~LF~~ML~~----------e~~~p~~la~DrPS~Kll~FL~KhY~L~~~ipQ~NnFVVf~~fF~~~ 197 (200)
T 4b5o_A 139 HGRELFQYMLQK----------ERVEPHQLAIDRPSQKLLKFLNKHYNLETTVPQVNNFVIFEGFFAHQ 197 (200)
T ss_dssp HHHHHHHHHHHH----------HTCCGGGCEEESCCHHHHHHHHHHHCCCBCSCCTTSEECBTTSSTTS
T ss_pred cHHHHHHHHHHH----------cCCChhhccccCCCHHHHHHHHHhcCCCcCCCCCccEEEehhhccCC
Confidence 478889998842 12223346789999999999876 4554333 25445566666665
No 34
>2wdt_A Ubiquitin carboxyl-terminal hydrolase L3; hydrolase-protein binding complex, enzyme-ligand complex, UB isopeptidase, UCH-L superfamily, cystein proteinase, peptid hydrolase; 2.30A {Plasmodium falciparum} PDB: 2we6_A
Probab=21.57 E-value=69 Score=28.16 Aligned_cols=32 Identities=13% Similarity=0.188 Sum_probs=27.0
Q ss_pred EEEeeCChHHHHHHHhhcCCCccCCCCeEEEEeccC-CC
Q 024646 60 VVAYSRSPSFYVDLLKRRGIDIASSHDWIHILDCYT-DP 97 (265)
Q Consensus 60 vl~fe~spe~y~~~lk~~G~d~~~~~~~v~i~D~ys-DP 97 (265)
.+-+|..|+.|.+++++-|+. . +.++|.|+ ||
T Consensus 7 w~plESnP~Vft~l~~~lGv~-----~-~~f~DVysld~ 39 (232)
T 2wdt_A 7 WTPLESNPDSLYLYSCKLGQS-----K-LKFVDIYGFNN 39 (232)
T ss_dssp CCCCBCCHHHHHHHHHHHTCC-----S-EEEEECCCSSH
T ss_pred ceeecCCHHHHHHHHHHhCCC-----C-eEEEEcccCCH
Confidence 345799999999999999994 3 89999998 54
No 35
>3rii_A Ubiquitin carboxyl-terminal hydrolase isozyme L5; alpha-beta-alpha fold, thiol hydroalse, cysteine protease, deubiquitinating enzyme; 2.00A {Homo sapiens} SCOP: d.3.1.0 PDB: 3ris_A 3sqa_A 3tb3_A 3a7s_A
Probab=20.07 E-value=73 Score=28.00 Aligned_cols=32 Identities=16% Similarity=0.393 Sum_probs=26.8
Q ss_pred EEEeeCChHHHHHHHhhcCCCccCCCCeEEEEeccC-CC
Q 024646 60 VVAYSRSPSFYVDLLKRRGIDIASSHDWIHILDCYT-DP 97 (265)
Q Consensus 60 vl~fe~spe~y~~~lk~~G~d~~~~~~~v~i~D~ys-DP 97 (265)
.+-+|..|+.|.+++++-|+. .+.++|.|+ ||
T Consensus 13 w~pLESnP~Vft~l~~~LGv~------~~~f~DVysLD~ 45 (233)
T 3rii_A 13 WCLMESDPGVFTELIKGFGCR------GAQVEEIWSLEP 45 (233)
T ss_dssp SCCCCCCHHHHHHHHHHTTCB------SEEEEECSCSST
T ss_pred eeeecCCHHHHHHHHHHhCCC------CcEEEEcccCCH
Confidence 345799999999999999994 389999998 54
Done!