Query 024647
Match_columns 265
No_of_seqs 209 out of 2627
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 06:19:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024647.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024647hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3010 Methyltransferase [Gen 100.0 2.9E-44 6.2E-49 286.4 18.8 259 1-262 1-261 (261)
2 PRK10258 biotin biosynthesis p 99.9 2.2E-23 4.8E-28 175.2 19.3 233 2-261 10-250 (251)
3 COG2226 UbiE Methylase involve 99.9 4.6E-24 9.9E-29 174.8 11.3 143 2-155 14-173 (238)
4 PRK14103 trans-aconitate 2-met 99.9 1.2E-21 2.5E-26 165.1 17.4 232 9-262 4-254 (255)
5 PF01209 Ubie_methyltran: ubiE 99.9 1.5E-22 3.3E-27 167.3 11.0 149 2-162 10-176 (233)
6 PRK01683 trans-aconitate 2-met 99.9 3.2E-20 7E-25 156.6 17.8 236 8-263 5-258 (258)
7 PLN02233 ubiquinone biosynthes 99.9 1.4E-20 2.9E-25 158.8 14.1 132 3-142 37-187 (261)
8 COG4106 Tam Trans-aconitate me 99.8 1.5E-20 3.3E-25 148.2 11.6 224 15-263 16-257 (257)
9 TIGR02072 BioC biotin biosynth 99.8 1.6E-19 3.4E-24 150.3 15.8 228 4-261 1-240 (240)
10 PRK05785 hypothetical protein; 99.8 1.3E-19 2.8E-24 149.6 14.1 119 2-130 12-140 (226)
11 PLN02244 tocopherol O-methyltr 99.8 1.8E-19 3.9E-24 157.5 14.5 99 32-138 117-224 (340)
12 PF08241 Methyltransf_11: Meth 99.8 1.8E-19 3.9E-24 128.2 8.6 90 38-135 1-95 (95)
13 PRK11036 putative S-adenosyl-L 99.8 2.4E-18 5.1E-23 145.0 12.6 129 3-139 4-151 (255)
14 KOG1540 Ubiquinone biosynthesi 99.8 2.6E-18 5.7E-23 138.8 11.1 145 3-156 64-232 (296)
15 PRK08317 hypothetical protein; 99.8 4E-17 8.7E-22 135.7 18.2 99 32-138 18-125 (241)
16 PF13489 Methyltransf_23: Meth 99.8 2.7E-18 6E-23 134.1 9.5 117 12-140 1-118 (161)
17 TIGR02752 MenG_heptapren 2-hep 99.8 1.4E-17 3E-22 138.2 13.9 133 2-142 8-156 (231)
18 PLN02396 hexaprenyldihydroxybe 99.8 4.7E-18 1E-22 146.5 10.9 100 33-140 131-238 (322)
19 COG2227 UbiG 2-polyprenyl-3-me 99.7 5.5E-18 1.2E-22 136.8 9.4 100 33-140 59-164 (243)
20 PF13847 Methyltransf_31: Meth 99.7 7E-17 1.5E-21 125.4 9.8 98 33-139 3-112 (152)
21 PRK11088 rrmA 23S rRNA methylt 99.7 3.5E-16 7.6E-21 133.0 14.7 108 22-143 73-187 (272)
22 PRK11207 tellurite resistance 99.7 2.4E-16 5.2E-21 127.6 12.6 107 20-137 19-134 (197)
23 PF12847 Methyltransf_18: Meth 99.7 1.4E-16 3.1E-21 117.0 10.2 97 33-137 1-111 (112)
24 PTZ00098 phosphoethanolamine N 99.7 1.2E-15 2.6E-20 128.9 17.0 100 32-139 51-158 (263)
25 PRK15451 tRNA cmo(5)U34 methyl 99.7 5.2E-16 1.1E-20 130.1 13.1 123 5-138 20-165 (247)
26 KOG1270 Methyltransferases [Co 99.7 1.1E-16 2.4E-21 130.2 7.5 100 34-140 90-198 (282)
27 PRK15068 tRNA mo(5)U34 methylt 99.7 2.9E-16 6.3E-21 136.1 10.7 97 33-138 122-227 (322)
28 PLN02490 MPBQ/MSBQ methyltrans 99.7 6E-16 1.3E-20 134.0 12.0 126 5-138 80-216 (340)
29 TIGR00452 methyltransferase, p 99.7 1.7E-16 3.7E-21 136.3 7.4 98 32-138 120-226 (314)
30 KOG4300 Predicted methyltransf 99.7 6.1E-16 1.3E-20 121.4 9.6 136 12-156 53-200 (252)
31 TIGR00740 methyltransferase, p 99.6 2E-15 4.3E-20 126.0 12.5 124 5-139 17-163 (239)
32 PF08242 Methyltransf_12: Meth 99.6 4.6E-17 1E-21 117.1 2.1 90 38-133 1-99 (99)
33 PRK00216 ubiE ubiquinone/menaq 99.6 3E-15 6.4E-20 124.6 13.0 130 3-140 15-161 (239)
34 PF13649 Methyltransf_25: Meth 99.6 2.4E-16 5.3E-21 113.8 5.0 87 37-131 1-101 (101)
35 TIGR00477 tehB tellurite resis 99.6 2.8E-15 6E-20 121.2 11.7 107 20-137 19-133 (195)
36 TIGR01934 MenG_MenH_UbiE ubiqu 99.6 6E-15 1.3E-19 121.5 13.2 131 2-140 2-146 (223)
37 PLN02336 phosphoethanolamine N 99.6 2.8E-15 6E-20 137.2 12.0 100 32-139 265-371 (475)
38 TIGR03587 Pse_Me-ase pseudamin 99.6 6.3E-15 1.4E-19 119.7 12.7 98 30-138 40-143 (204)
39 PRK00121 trmB tRNA (guanine-N( 99.6 1.1E-15 2.5E-20 124.1 8.3 109 23-139 30-158 (202)
40 PRK11873 arsM arsenite S-adeno 99.6 4.8E-15 1E-19 126.0 11.9 100 32-139 76-185 (272)
41 PRK00107 gidB 16S rRNA methylt 99.6 1.5E-14 3.3E-19 115.6 11.9 97 30-138 42-146 (187)
42 smart00138 MeTrc Methyltransfe 99.6 4.3E-15 9.3E-20 125.4 8.6 95 33-135 99-240 (264)
43 PRK06922 hypothetical protein; 99.6 3.4E-14 7.3E-19 130.5 14.6 98 33-138 418-538 (677)
44 TIGR03840 TMPT_Se_Te thiopurin 99.6 1.7E-14 3.6E-19 117.9 11.2 118 21-139 21-154 (213)
45 PRK11188 rrmJ 23S rRNA methylt 99.6 2.1E-14 4.6E-19 117.1 11.0 100 31-143 49-171 (209)
46 PF05401 NodS: Nodulation prot 99.6 9.4E-15 2E-19 115.1 8.3 97 34-139 44-148 (201)
47 PRK12335 tellurite resistance 99.6 3.3E-14 7.1E-19 121.8 12.0 107 20-137 109-223 (287)
48 COG2230 Cfa Cyclopropane fatty 99.6 3.4E-14 7.4E-19 118.8 11.6 98 32-140 71-179 (283)
49 PRK06202 hypothetical protein; 99.6 2E-14 4.4E-19 119.4 9.8 98 32-139 59-168 (232)
50 TIGR00138 gidB 16S rRNA methyl 99.6 1.2E-13 2.7E-18 110.1 13.7 111 15-137 18-142 (181)
51 COG4976 Predicted methyltransf 99.5 7.7E-15 1.7E-19 117.0 6.1 131 2-139 88-227 (287)
52 PF05175 MTS: Methyltransferas 99.5 8.2E-14 1.8E-18 110.2 11.5 111 33-152 31-155 (170)
53 TIGR00091 tRNA (guanine-N(7)-) 99.5 5.1E-14 1.1E-18 113.8 9.9 100 32-139 15-134 (194)
54 smart00828 PKS_MT Methyltransf 99.5 1.9E-14 4.2E-19 118.8 7.2 96 35-139 1-106 (224)
55 PLN02336 phosphoethanolamine N 99.5 5.2E-14 1.1E-18 128.8 10.3 97 33-137 37-142 (475)
56 PF02353 CMAS: Mycolic acid cy 99.5 2E-13 4.3E-18 115.5 11.3 105 24-139 51-168 (273)
57 KOG2940 Predicted methyltransf 99.5 1.5E-13 3.4E-18 109.6 9.8 106 32-143 71-180 (325)
58 TIGR02081 metW methionine bios 99.5 1.5E-13 3.3E-18 111.0 10.0 94 26-127 6-103 (194)
59 TIGR02469 CbiT precorrin-6Y C5 99.5 4.6E-13 1E-17 99.9 11.7 106 22-137 6-122 (124)
60 PRK05134 bifunctional 3-demeth 99.5 8.5E-13 1.8E-17 109.7 14.1 129 3-139 10-153 (233)
61 PRK11705 cyclopropane fatty ac 99.5 3.6E-13 7.7E-18 119.4 12.4 97 32-139 166-269 (383)
62 TIGR01983 UbiG ubiquinone bios 99.5 3.7E-13 8E-18 111.1 11.7 98 34-139 46-151 (224)
63 PF03848 TehB: Tellurite resis 99.5 2.8E-13 6.1E-18 107.9 9.9 107 21-138 20-134 (192)
64 KOG1541 Predicted protein carb 99.5 1.7E-13 3.8E-18 108.7 8.5 125 7-139 18-162 (270)
65 TIGR02021 BchM-ChlM magnesium 99.5 2.8E-13 6E-18 111.6 10.1 93 32-135 54-156 (219)
66 TIGR00537 hemK_rel_arch HemK-r 99.5 5.5E-13 1.2E-17 106.4 10.6 99 32-140 18-143 (179)
67 PRK13255 thiopurine S-methyltr 99.5 8.3E-13 1.8E-17 108.3 11.9 114 21-135 24-153 (218)
68 PRK13944 protein-L-isoaspartat 99.5 6.7E-13 1.5E-17 108.1 10.8 104 21-137 58-173 (205)
69 PRK09489 rsmC 16S ribosomal RN 99.4 3.3E-13 7.3E-18 117.7 9.5 108 34-151 197-317 (342)
70 PRK14121 tRNA (guanine-N(7)-)- 99.4 1.6E-12 3.5E-17 113.8 13.7 101 33-141 122-239 (390)
71 PF08003 Methyltransf_9: Prote 99.4 1.9E-13 4E-18 114.6 7.2 107 25-138 105-220 (315)
72 PRK04266 fibrillarin; Provisio 99.4 8E-13 1.7E-17 108.8 10.8 98 32-136 71-175 (226)
73 PTZ00146 fibrillarin; Provisio 99.4 1.4E-12 3.1E-17 109.9 12.4 116 12-135 107-235 (293)
74 PRK15001 SAM-dependent 23S rib 99.4 1.3E-12 2.8E-17 114.8 12.7 107 34-149 229-352 (378)
75 PRK13942 protein-L-isoaspartat 99.4 1E-12 2.3E-17 107.5 11.4 104 20-136 61-175 (212)
76 TIGR00080 pimt protein-L-isoas 99.4 1.3E-12 2.9E-17 107.2 11.5 103 22-137 64-177 (215)
77 PF07021 MetW: Methionine bios 99.4 1.1E-12 2.3E-17 103.3 9.5 104 26-139 6-111 (193)
78 TIGR00406 prmA ribosomal prote 99.4 6.1E-13 1.3E-17 113.9 8.3 104 24-139 150-261 (288)
79 PF13659 Methyltransf_26: Meth 99.4 1.3E-12 2.7E-17 96.7 8.9 96 35-138 2-116 (117)
80 PRK14967 putative methyltransf 99.4 1.8E-12 3.9E-17 107.0 10.5 116 15-139 16-161 (223)
81 TIGR00438 rrmJ cell division p 99.4 2.1E-12 4.4E-17 103.9 10.0 104 32-142 31-151 (188)
82 PLN03075 nicotianamine synthas 99.4 3.9E-12 8.4E-17 107.7 11.9 96 33-137 123-233 (296)
83 TIGR03438 probable methyltrans 99.4 3.9E-12 8.4E-17 109.6 11.9 100 29-136 59-176 (301)
84 PRK00312 pcm protein-L-isoaspa 99.4 5E-12 1.1E-16 103.6 11.5 106 20-138 63-176 (212)
85 PRK08287 cobalt-precorrin-6Y C 99.4 8E-12 1.7E-16 100.3 12.3 95 32-138 30-132 (187)
86 PLN02585 magnesium protoporphy 99.4 5.3E-12 1.1E-16 108.8 11.9 92 33-136 144-249 (315)
87 COG2264 PrmA Ribosomal protein 99.4 1.2E-12 2.6E-17 110.4 7.6 113 20-139 149-265 (300)
88 PRK00517 prmA ribosomal protei 99.4 1.3E-12 2.9E-17 109.6 7.8 105 21-139 107-215 (250)
89 TIGR01177 conserved hypothetic 99.4 8.7E-12 1.9E-16 108.8 13.0 115 20-142 167-299 (329)
90 PRK07580 Mg-protoporphyrin IX 99.3 6.9E-12 1.5E-16 103.9 10.6 90 32-132 62-161 (230)
91 PRK00811 spermidine synthase; 99.3 1.6E-11 3.5E-16 104.7 12.3 112 19-138 62-192 (283)
92 TIGR02716 C20_methyl_CrtF C-20 99.3 9.7E-12 2.1E-16 107.5 10.0 96 32-138 148-255 (306)
93 TIGR03534 RF_mod_PrmC protein- 99.3 3E-11 6.5E-16 101.3 12.5 109 20-137 73-217 (251)
94 PLN02232 ubiquinone biosynthes 99.3 6.7E-12 1.4E-16 98.2 7.7 75 59-141 1-85 (160)
95 PRK13256 thiopurine S-methyltr 99.3 5.8E-11 1.3E-15 97.2 13.3 118 20-138 29-164 (226)
96 PRK07402 precorrin-6B methylas 99.3 6.5E-11 1.4E-15 95.8 13.0 112 17-139 22-144 (196)
97 PRK00377 cbiT cobalt-precorrin 99.3 3.8E-11 8.3E-16 97.3 11.6 97 32-138 39-146 (198)
98 PHA03411 putative methyltransf 99.3 3.4E-11 7.4E-16 100.6 11.4 108 20-136 51-182 (279)
99 cd02440 AdoMet_MTases S-adenos 99.3 3.6E-11 7.8E-16 85.7 10.2 93 36-136 1-103 (107)
100 PRK01581 speE spermidine synth 99.3 4.3E-11 9.3E-16 103.6 11.9 112 19-138 136-269 (374)
101 PRK04457 spermidine synthase; 99.3 2.4E-11 5.1E-16 102.6 10.0 99 32-139 65-179 (262)
102 COG4123 Predicted O-methyltran 99.3 3E-11 6.5E-16 99.5 10.1 106 32-138 43-171 (248)
103 PRK14968 putative methyltransf 99.3 6.6E-11 1.4E-15 94.8 12.0 98 32-138 22-149 (188)
104 PF06325 PrmA: Ribosomal prote 99.3 6.1E-12 1.3E-16 107.0 5.1 119 21-152 149-273 (295)
105 PRK14966 unknown domain/N5-glu 99.2 3.5E-11 7.5E-16 106.2 9.6 110 20-137 238-381 (423)
106 TIGR03533 L3_gln_methyl protei 99.2 4.2E-11 9.2E-16 102.2 9.4 110 20-138 105-252 (284)
107 PRK13943 protein-L-isoaspartat 99.2 1.6E-10 3.4E-15 99.9 12.3 104 21-137 66-180 (322)
108 PF05219 DREV: DREV methyltran 99.2 1.7E-10 3.8E-15 94.7 11.9 92 33-135 94-186 (265)
109 TIGR00536 hemK_fam HemK family 99.2 1.7E-10 3.8E-15 98.6 12.3 113 16-138 95-245 (284)
110 smart00650 rADc Ribosomal RNA 99.2 5.9E-11 1.3E-15 93.7 8.6 94 32-135 12-111 (169)
111 COG2813 RsmC 16S RNA G1207 met 99.2 4.6E-11 1E-15 100.4 7.8 110 34-153 159-282 (300)
112 COG2242 CobL Precorrin-6B meth 99.2 3.4E-10 7.4E-15 88.7 12.0 98 32-140 33-138 (187)
113 PRK03612 spermidine synthase; 99.2 2.2E-10 4.7E-15 105.7 12.4 112 19-138 283-416 (521)
114 PF03291 Pox_MCEL: mRNA cappin 99.2 8.4E-11 1.8E-15 101.9 9.0 104 33-139 62-188 (331)
115 PRK11805 N5-glutamine S-adenos 99.2 7.7E-11 1.7E-15 101.6 8.6 95 35-138 135-264 (307)
116 PRK09328 N5-glutamine S-adenos 99.2 2.9E-10 6.2E-15 96.8 12.0 109 20-137 93-238 (275)
117 PHA03412 putative methyltransf 99.2 2.8E-10 6E-15 93.1 10.8 106 20-135 36-160 (241)
118 TIGR00417 speE spermidine synt 99.2 3.2E-10 6.9E-15 96.3 11.6 100 31-138 70-187 (270)
119 KOG1975 mRNA cap methyltransfe 99.2 2.1E-10 4.6E-15 96.2 10.0 130 7-139 75-239 (389)
120 PF05891 Methyltransf_PK: AdoM 99.2 1.2E-10 2.6E-15 93.5 8.2 95 33-135 55-159 (218)
121 PLN02366 spermidine synthase 99.2 4E-10 8.6E-15 96.9 11.8 99 31-137 89-206 (308)
122 TIGR03704 PrmC_rel_meth putati 99.2 4.8E-10 1E-14 94.1 12.1 111 20-138 70-217 (251)
123 KOG2899 Predicted methyltransf 99.1 1.8E-10 4E-15 92.9 8.5 113 20-135 45-207 (288)
124 PF05724 TPMT: Thiopurine S-me 99.1 2E-10 4.3E-15 94.1 8.6 124 9-135 14-153 (218)
125 PRK01544 bifunctional N5-gluta 99.1 2E-10 4.4E-15 105.4 8.9 95 34-137 139-269 (506)
126 PF02390 Methyltransf_4: Putat 99.1 2.6E-10 5.7E-15 91.9 8.2 100 35-139 19-135 (195)
127 COG2518 Pcm Protein-L-isoaspar 99.1 8.8E-10 1.9E-14 88.2 10.7 94 32-138 71-170 (209)
128 PF01135 PCMT: Protein-L-isoas 99.1 3.4E-10 7.5E-15 92.0 8.5 104 21-137 58-172 (209)
129 PRK10901 16S rRNA methyltransf 99.1 2.7E-10 5.9E-15 102.8 8.5 100 32-139 243-374 (427)
130 PRK10909 rsmD 16S rRNA m(2)G96 99.1 2.2E-09 4.8E-14 86.7 12.8 117 15-140 33-162 (199)
131 KOG2361 Predicted methyltransf 99.1 4.4E-10 9.6E-15 90.8 8.5 104 35-142 73-188 (264)
132 KOG1271 Methyltransferases [Ge 99.1 6.5E-10 1.4E-14 86.1 8.5 123 21-153 49-195 (227)
133 PRK14901 16S rRNA methyltransf 99.1 9.2E-10 2E-14 99.6 11.0 100 32-139 251-386 (434)
134 COG0220 Predicted S-adenosylme 99.1 2.5E-09 5.5E-14 87.7 11.8 127 8-139 18-166 (227)
135 TIGR00446 nop2p NOL1/NOP2/sun 99.1 2.3E-09 5E-14 90.7 11.7 100 32-139 70-201 (264)
136 PRK13168 rumA 23S rRNA m(5)U19 99.0 2E-09 4.3E-14 97.7 12.0 122 21-150 283-412 (443)
137 PRK14904 16S rRNA methyltransf 99.0 1.9E-09 4E-14 97.9 11.6 99 32-139 249-379 (445)
138 PRK03522 rumB 23S rRNA methylu 99.0 2.3E-09 4.9E-14 93.1 11.3 106 33-149 173-285 (315)
139 PRK14903 16S rRNA methyltransf 99.0 1.9E-09 4.1E-14 97.3 11.1 100 32-139 236-368 (431)
140 PF05148 Methyltransf_8: Hypot 99.0 1.5E-09 3.2E-14 86.5 9.1 128 10-155 46-177 (219)
141 COG2890 HemK Methylase of poly 99.0 6.3E-09 1.4E-13 88.5 12.7 123 20-154 96-253 (280)
142 PF00891 Methyltransf_2: O-met 99.0 2.2E-09 4.7E-14 89.7 9.4 96 32-139 99-201 (241)
143 COG2519 GCD14 tRNA(1-methylade 99.0 3.3E-09 7.2E-14 86.8 9.9 115 15-142 75-200 (256)
144 PF06080 DUF938: Protein of un 99.0 2.9E-09 6.3E-14 85.2 9.2 136 21-164 12-169 (204)
145 PLN02781 Probable caffeoyl-CoA 99.0 5.5E-09 1.2E-13 86.7 10.8 107 23-136 59-177 (234)
146 PRK15128 23S rRNA m(5)C1962 me 99.0 1E-08 2.2E-13 91.3 13.0 112 32-151 219-353 (396)
147 PRK00274 ksgA 16S ribosomal RN 99.0 2.3E-09 5E-14 91.1 8.5 83 20-109 27-114 (272)
148 TIGR00563 rsmB ribosomal RNA s 99.0 2.1E-09 4.6E-14 97.0 8.4 104 32-139 237-370 (426)
149 PRK14902 16S rRNA methyltransf 99.0 4.7E-09 1E-13 95.3 10.5 99 32-139 249-381 (444)
150 KOG1499 Protein arginine N-met 98.9 6.3E-10 1.4E-14 94.8 4.3 93 33-134 60-164 (346)
151 PRK11783 rlmL 23S rRNA m(2)G24 98.9 1.7E-09 3.7E-14 103.2 7.1 100 32-139 537-658 (702)
152 TIGR00479 rumA 23S rRNA (uraci 98.9 4.9E-09 1.1E-13 94.9 9.1 114 17-137 274-396 (431)
153 PRK14896 ksgA 16S ribosomal RN 98.9 7.6E-09 1.6E-13 87.3 9.0 84 20-112 14-103 (258)
154 PF01739 CheR: CheR methyltran 98.9 5E-09 1.1E-13 84.3 7.3 95 33-135 31-173 (196)
155 TIGR00478 tly hemolysin TlyA f 98.9 2.5E-08 5.4E-13 82.1 11.4 103 22-135 62-169 (228)
156 TIGR00755 ksgA dimethyladenosi 98.9 1.7E-08 3.7E-13 84.9 10.8 84 20-112 14-106 (253)
157 PRK00536 speE spermidine synth 98.9 2.9E-08 6.3E-13 83.1 11.8 105 19-138 58-172 (262)
158 COG3963 Phospholipid N-methylt 98.9 5.8E-08 1.3E-12 74.3 12.2 115 20-139 33-158 (194)
159 KOG3045 Predicted RNA methylas 98.9 8.5E-09 1.8E-13 84.2 8.0 88 32-139 179-266 (325)
160 PF05185 PRMT5: PRMT5 arginine 98.9 6E-09 1.3E-13 94.0 7.3 119 3-134 154-294 (448)
161 PLN02823 spermine synthase 98.8 3.6E-08 7.8E-13 85.7 11.3 118 19-137 89-220 (336)
162 TIGR00095 RNA methyltransferas 98.8 2.7E-08 5.9E-13 79.9 9.8 116 15-139 29-161 (189)
163 PF10294 Methyltransf_16: Puta 98.8 1.4E-08 3E-13 80.5 7.9 103 32-139 44-158 (173)
164 PRK10611 chemotaxis methyltran 98.8 1.6E-08 3.6E-13 85.8 8.8 101 34-135 116-260 (287)
165 PTZ00338 dimethyladenosine tra 98.8 1.9E-08 4.1E-13 86.1 9.2 86 20-114 21-115 (294)
166 PF01596 Methyltransf_3: O-met 98.8 2.7E-08 5.8E-13 80.7 9.1 107 24-137 37-155 (205)
167 PF08704 GCD14: tRNA methyltra 98.8 3.3E-08 7.2E-13 82.1 9.3 113 18-142 24-151 (247)
168 TIGR02085 meth_trns_rumB 23S r 98.8 5.1E-08 1.1E-12 86.5 11.1 118 22-150 220-346 (374)
169 KOG2904 Predicted methyltransf 98.8 5.9E-08 1.3E-12 80.0 10.3 122 16-142 127-290 (328)
170 COG2263 Predicted RNA methylas 98.7 1.9E-08 4.2E-13 78.7 6.1 85 33-127 45-138 (198)
171 COG4122 Predicted O-methyltran 98.7 1.3E-07 2.8E-12 76.9 11.1 97 32-138 58-167 (219)
172 PF03141 Methyltransf_29: Puta 98.7 9.1E-09 2E-13 91.7 4.6 112 20-138 102-220 (506)
173 PRK04148 hypothetical protein; 98.7 2.1E-07 4.6E-12 69.7 10.5 105 22-139 3-111 (134)
174 KOG1331 Predicted methyltransf 98.7 3.2E-08 6.8E-13 82.2 6.6 125 4-139 17-145 (293)
175 PLN02476 O-methyltransferase 98.7 1.5E-07 3.3E-12 79.4 10.7 99 32-136 117-227 (278)
176 PF01564 Spermine_synth: Sperm 98.7 1.1E-07 2.3E-12 79.6 9.7 113 19-139 62-193 (246)
177 PLN02672 methionine S-methyltr 98.7 1E-07 2.2E-12 93.4 10.8 117 34-153 119-293 (1082)
178 COG1041 Predicted DNA modifica 98.7 9.3E-08 2E-12 82.1 8.7 119 18-139 180-312 (347)
179 PRK01544 bifunctional N5-gluta 98.7 1.4E-07 3.1E-12 86.8 10.4 101 33-139 347-464 (506)
180 COG0421 SpeE Spermidine syntha 98.7 3.5E-07 7.6E-12 77.5 11.7 104 32-137 75-190 (282)
181 COG1352 CheR Methylase of chem 98.7 3.2E-07 7E-12 77.1 11.4 94 34-135 97-239 (268)
182 TIGR02143 trmA_only tRNA (urac 98.7 1.3E-07 2.8E-12 83.3 9.4 65 20-84 183-254 (353)
183 PLN02589 caffeoyl-CoA O-methyl 98.6 3.2E-07 6.9E-12 76.5 10.9 97 33-135 79-188 (247)
184 PRK05031 tRNA (uracil-5-)-meth 98.6 1.6E-07 3.4E-12 83.1 9.3 65 20-84 192-263 (362)
185 KOG3987 Uncharacterized conser 98.6 1.8E-08 4E-13 79.7 2.9 93 33-135 112-205 (288)
186 PF01728 FtsJ: FtsJ-like methy 98.6 1.9E-07 4.2E-12 74.4 8.2 124 22-152 8-153 (181)
187 KOG0820 Ribosomal RNA adenine 98.6 1.3E-07 2.8E-12 78.0 6.7 88 21-111 44-134 (315)
188 COG0293 FtsJ 23S rRNA methylas 98.6 4.3E-07 9.3E-12 72.8 9.4 120 15-143 27-165 (205)
189 PF03602 Cons_hypoth95: Conser 98.5 2.4E-07 5.1E-12 73.9 7.2 123 13-140 19-156 (183)
190 PRK04338 N(2),N(2)-dimethylgua 98.5 6.7E-07 1.4E-11 79.4 10.4 109 17-136 38-157 (382)
191 COG0030 KsgA Dimethyladenosine 98.5 4.7E-07 1E-11 75.4 8.6 85 20-111 15-106 (259)
192 COG2521 Predicted archaeal met 98.5 3.4E-07 7.3E-12 74.0 7.0 102 32-141 133-249 (287)
193 KOG1661 Protein-L-isoaspartate 98.5 6.3E-07 1.4E-11 71.3 7.8 111 19-135 68-191 (237)
194 KOG3178 Hydroxyindole-O-methyl 98.5 9.1E-07 2E-11 75.9 8.9 93 34-138 178-276 (342)
195 KOG1500 Protein arginine N-met 98.5 3E-07 6.4E-12 78.0 5.8 99 33-134 177-279 (517)
196 PF02475 Met_10: Met-10+ like- 98.5 1.8E-07 3.9E-12 75.4 4.2 97 26-134 94-199 (200)
197 COG1092 Predicted SAM-dependen 98.5 1.5E-06 3.3E-11 76.7 10.4 107 26-141 211-340 (393)
198 COG0500 SmtA SAM-dependent met 98.4 2.4E-06 5.2E-11 65.2 10.2 96 37-141 52-159 (257)
199 PF09243 Rsm22: Mitochondrial 98.4 2.7E-06 5.9E-11 72.3 11.0 108 33-145 33-147 (274)
200 PRK11760 putative 23S rRNA C24 98.4 1.8E-06 4E-11 74.2 8.8 96 32-139 210-306 (357)
201 KOG3420 Predicted RNA methylas 98.4 6.2E-07 1.3E-11 67.1 5.0 88 16-110 29-124 (185)
202 PF12147 Methyltransf_20: Puta 98.4 1.2E-05 2.6E-10 67.5 13.0 99 32-135 134-247 (311)
203 PF02527 GidB: rRNA small subu 98.4 3.7E-06 8E-11 67.0 9.6 91 36-138 51-149 (184)
204 PRK00050 16S rRNA m(4)C1402 me 98.4 2E-06 4.3E-11 73.4 8.6 89 15-109 3-99 (296)
205 COG2265 TrmA SAM-dependent met 98.4 3.9E-06 8.5E-11 75.5 10.7 115 20-151 278-409 (432)
206 KOG3191 Predicted N6-DNA-methy 98.3 7.7E-06 1.7E-10 63.7 10.6 121 10-141 17-172 (209)
207 KOG1269 SAM-dependent methyltr 98.3 7.6E-07 1.7E-11 78.1 5.5 111 27-138 104-216 (364)
208 PRK11727 23S rRNA mA1618 methy 98.3 7.5E-07 1.6E-11 76.9 5.1 77 33-113 114-202 (321)
209 COG0742 N6-adenine-specific me 98.3 1.5E-05 3.2E-10 63.1 11.8 118 14-140 21-157 (187)
210 PF01170 UPF0020: Putative RNA 98.3 6.6E-06 1.4E-10 65.5 9.1 103 19-129 12-143 (179)
211 PRK11933 yebU rRNA (cytosine-C 98.2 1.5E-05 3.2E-10 72.5 11.7 100 32-139 112-244 (470)
212 PF05958 tRNA_U5-meth_tr: tRNA 98.2 4.3E-06 9.3E-11 73.7 8.0 65 20-84 182-253 (352)
213 PF00398 RrnaAD: Ribosomal RNA 98.2 6.8E-06 1.5E-10 69.5 8.1 99 20-127 15-122 (262)
214 TIGR03439 methyl_EasF probable 98.1 4.1E-05 9E-10 66.2 11.6 102 28-135 71-195 (319)
215 PF01269 Fibrillarin: Fibrilla 98.1 3.5E-05 7.6E-10 62.4 10.2 120 11-138 47-179 (229)
216 PF10672 Methyltrans_SAM: S-ad 98.1 1.4E-05 3.1E-10 67.9 7.9 109 25-139 116-240 (286)
217 KOG1663 O-methyltransferase [S 98.1 4E-05 8.6E-10 62.1 9.8 96 33-135 73-181 (237)
218 PF11968 DUF3321: Putative met 98.1 2E-05 4.4E-10 63.4 8.1 102 20-139 32-151 (219)
219 COG2520 Predicted methyltransf 98.0 1.8E-05 3.9E-10 68.6 8.0 111 26-140 181-292 (341)
220 PF09445 Methyltransf_15: RNA 98.0 1.1E-05 2.3E-10 62.8 4.6 66 36-108 2-77 (163)
221 COG0357 GidB Predicted S-adeno 98.0 0.00012 2.6E-09 59.5 10.7 115 10-136 36-167 (215)
222 KOG1709 Guanidinoacetate methy 97.9 0.0001 2.2E-09 59.1 9.9 101 32-138 100-207 (271)
223 KOG2187 tRNA uracil-5-methyltr 97.9 7.3E-05 1.6E-09 67.2 9.5 65 21-85 369-441 (534)
224 PF02384 N6_Mtase: N-6 DNA Met 97.9 5.9E-05 1.3E-09 65.4 8.7 113 20-139 31-185 (311)
225 COG1189 Predicted rRNA methyla 97.9 0.00012 2.6E-09 59.7 9.6 106 22-135 66-176 (245)
226 TIGR02987 met_A_Alw26 type II 97.9 8.1E-05 1.8E-09 69.2 9.9 54 20-73 9-81 (524)
227 PF07942 N2227: N2227-like pro 97.9 0.0001 2.2E-09 62.0 9.6 100 34-134 57-199 (270)
228 COG4262 Predicted spermidine s 97.9 4.8E-05 1E-09 65.6 7.2 110 20-137 276-407 (508)
229 PF08123 DOT1: Histone methyla 97.9 9.5E-05 2.1E-09 60.0 8.7 99 32-135 41-156 (205)
230 COG4076 Predicted RNA methylas 97.9 3.5E-05 7.6E-10 60.4 5.9 92 34-135 33-133 (252)
231 KOG2352 Predicted spermine/spe 97.8 0.00019 4.1E-09 64.3 10.3 106 25-138 39-162 (482)
232 COG0144 Sun tRNA and rRNA cyto 97.8 0.00029 6.2E-09 62.2 11.3 103 32-139 155-290 (355)
233 KOG4589 Cell division protein 97.8 9.7E-05 2.1E-09 57.9 7.1 113 32-153 68-199 (232)
234 PF01234 NNMT_PNMT_TEMT: NNMT/ 97.7 5.5E-05 1.2E-09 63.2 5.5 105 33-138 56-200 (256)
235 TIGR00308 TRM1 tRNA(guanine-26 97.7 0.00021 4.4E-09 63.4 9.1 92 35-137 46-147 (374)
236 COG3897 Predicted methyltransf 97.7 0.00027 5.9E-09 55.9 7.9 114 23-143 67-185 (218)
237 PF13679 Methyltransf_32: Meth 97.5 0.00022 4.7E-09 54.5 5.3 42 32-73 24-71 (141)
238 PF03059 NAS: Nicotianamine sy 97.5 0.00075 1.6E-08 57.1 8.8 95 34-136 121-229 (276)
239 KOG3115 Methyltransferase-like 97.5 0.00034 7.3E-09 55.7 6.0 53 20-72 41-101 (249)
240 TIGR01444 fkbM_fam methyltrans 97.4 0.00019 4E-09 54.7 4.5 38 36-73 1-40 (143)
241 COG1063 Tdh Threonine dehydrog 97.4 0.0025 5.3E-08 56.3 12.0 101 33-140 168-272 (350)
242 PRK11783 rlmL 23S rRNA m(2)G24 97.4 0.00079 1.7E-08 64.8 9.1 113 19-139 173-349 (702)
243 PF13578 Methyltransf_24: Meth 97.4 0.0001 2.2E-09 53.2 2.3 92 38-136 1-104 (106)
244 COG5459 Predicted rRNA methyla 97.3 0.00069 1.5E-08 58.3 6.4 105 33-142 113-230 (484)
245 KOG3201 Uncharacterized conser 97.2 0.00043 9.4E-09 53.1 4.0 107 34-142 30-145 (201)
246 COG1889 NOP1 Fibrillarin-like 97.2 0.0048 1E-07 49.3 9.9 118 11-136 50-179 (231)
247 PF01189 Nol1_Nop2_Fmu: NOL1/N 97.2 0.0021 4.6E-08 55.0 8.4 112 20-139 69-221 (283)
248 TIGR00006 S-adenosyl-methyltra 97.2 0.0024 5.3E-08 54.8 8.6 90 15-110 4-102 (305)
249 COG1064 AdhP Zn-dependent alco 97.1 0.0035 7.6E-08 54.5 9.3 96 31-139 164-261 (339)
250 KOG2915 tRNA(1-methyladenosine 97.1 0.0015 3.2E-08 54.4 6.5 109 18-138 89-211 (314)
251 KOG0024 Sorbitol dehydrogenase 97.1 0.0066 1.4E-07 51.9 10.2 104 32-142 168-278 (354)
252 PF04672 Methyltransf_19: S-ad 97.1 0.0038 8.3E-08 52.3 8.7 104 35-140 70-193 (267)
253 KOG2730 Methylase [General fun 97.1 0.001 2.2E-08 53.6 5.0 63 20-82 78-150 (263)
254 COG0116 Predicted N6-adenine-s 97.0 0.0081 1.7E-07 52.9 10.5 109 21-137 177-344 (381)
255 KOG0822 Protein kinase inhibit 97.0 0.0011 2.3E-08 60.0 4.9 128 3-136 336-477 (649)
256 PF06962 rRNA_methylase: Putat 97.0 0.0032 6.9E-08 47.6 6.7 93 57-155 1-110 (140)
257 PF03141 Methyltransf_29: Puta 96.9 0.0015 3.2E-08 59.1 4.8 127 3-137 337-467 (506)
258 PRK09880 L-idonate 5-dehydroge 96.8 0.02 4.4E-07 50.2 11.7 96 33-138 169-267 (343)
259 COG0275 Predicted S-adenosylme 96.8 0.028 6.1E-07 47.8 11.7 68 15-84 7-82 (314)
260 PLN02668 indole-3-acetate carb 96.8 0.0067 1.4E-07 53.8 8.3 26 89-114 151-176 (386)
261 PF07091 FmrO: Ribosomal RNA m 96.8 0.005 1.1E-07 51.0 6.9 109 21-139 93-210 (251)
262 PF01555 N6_N4_Mtase: DNA meth 96.8 0.0029 6.3E-08 51.8 5.5 57 16-72 173-230 (231)
263 cd08283 FDH_like_1 Glutathione 96.7 0.02 4.3E-07 51.1 11.2 105 32-138 183-307 (386)
264 PF03492 Methyltransf_7: SAM d 96.7 0.013 2.8E-07 51.3 9.3 79 31-114 14-121 (334)
265 COG4627 Uncharacterized protei 96.7 0.0014 3.1E-08 49.9 2.8 47 93-140 40-89 (185)
266 COG4798 Predicted methyltransf 96.7 0.0081 1.8E-07 47.7 7.1 100 31-139 46-168 (238)
267 PRK09424 pntA NAD(P) transhydr 96.6 0.019 4.1E-07 53.0 10.3 104 33-138 164-286 (509)
268 PF00107 ADH_zinc_N: Zinc-bind 96.6 0.015 3.2E-07 43.2 8.1 91 43-140 1-92 (130)
269 KOG1099 SAM-dependent methyltr 96.6 0.0027 6E-08 51.5 4.1 115 33-154 41-183 (294)
270 PRK10742 putative methyltransf 96.5 0.02 4.3E-07 47.6 8.8 91 36-126 91-190 (250)
271 PRK11524 putative methyltransf 96.5 0.008 1.7E-07 51.4 6.6 57 18-74 192-249 (284)
272 PF04816 DUF633: Family of unk 96.3 0.013 2.8E-07 47.6 6.6 90 37-135 1-99 (205)
273 PF04989 CmcI: Cephalosporin h 96.3 0.032 6.9E-07 45.1 8.5 117 18-138 16-148 (206)
274 PHA01634 hypothetical protein 96.3 0.014 3.1E-07 43.1 5.9 71 33-107 28-99 (156)
275 PRK13699 putative methylase; P 96.2 0.017 3.6E-07 47.8 6.7 56 18-73 147-203 (227)
276 KOG1562 Spermidine synthase [A 96.2 0.017 3.6E-07 48.9 6.4 101 31-137 119-236 (337)
277 PF01795 Methyltransf_5: MraW 96.1 0.021 4.6E-07 49.1 7.2 89 15-109 4-102 (310)
278 KOG2798 Putative trehalase [Ca 96.0 0.027 5.9E-07 48.0 6.8 120 15-135 126-294 (369)
279 cd08237 ribitol-5-phosphate_DH 95.9 0.1 2.2E-06 45.8 10.6 92 32-138 162-257 (341)
280 KOG2793 Putative N2,N2-dimethy 95.9 0.076 1.6E-06 44.2 9.1 104 33-138 86-200 (248)
281 TIGR03451 mycoS_dep_FDH mycoth 95.8 0.13 2.9E-06 45.3 11.1 100 32-138 175-277 (358)
282 cd08254 hydroxyacyl_CoA_DH 6-h 95.8 0.13 2.8E-06 44.5 10.9 99 32-139 164-265 (338)
283 COG3510 CmcI Cephalosporin hyd 95.7 0.14 3.1E-06 40.7 9.4 122 15-139 48-182 (237)
284 KOG1596 Fibrillarin and relate 95.6 0.06 1.3E-06 44.3 7.3 110 19-138 137-262 (317)
285 cd08239 THR_DH_like L-threonin 95.6 0.18 4E-06 43.9 11.1 99 32-138 162-263 (339)
286 PF07757 AdoMet_MTase: Predict 95.5 0.012 2.6E-07 42.1 2.7 33 33-65 58-90 (112)
287 PF05971 Methyltransf_10: Prot 95.5 0.07 1.5E-06 45.7 7.8 77 34-113 103-190 (299)
288 cd08281 liver_ADH_like1 Zinc-d 95.5 0.19 4.1E-06 44.6 10.9 99 32-138 190-291 (371)
289 cd08230 glucose_DH Glucose deh 95.5 0.17 3.6E-06 44.6 10.4 95 32-138 171-270 (355)
290 cd00315 Cyt_C5_DNA_methylase C 95.3 0.042 9E-07 46.8 5.8 67 36-110 2-72 (275)
291 cd05188 MDR Medium chain reduc 95.3 0.26 5.5E-06 41.0 10.5 100 32-139 133-234 (271)
292 KOG1227 Putative methyltransfe 95.3 0.021 4.5E-07 48.4 3.7 100 32-135 193-294 (351)
293 TIGR00561 pntA NAD(P) transhyd 95.3 0.086 1.9E-06 48.6 8.0 100 33-134 163-281 (511)
294 KOG1501 Arginine N-methyltrans 95.2 0.032 6.9E-07 49.7 4.8 92 36-133 69-171 (636)
295 TIGR01202 bchC 2-desacetyl-2-h 95.2 0.21 4.5E-06 43.1 9.9 86 33-138 144-232 (308)
296 PF04445 SAM_MT: Putative SAM- 95.2 0.02 4.3E-07 47.2 3.3 72 35-112 77-163 (234)
297 TIGR03366 HpnZ_proposed putati 95.2 0.27 5.9E-06 41.7 10.5 97 33-138 120-219 (280)
298 COG2384 Predicted SAM-dependen 95.1 0.086 1.9E-06 42.8 6.6 106 23-135 6-118 (226)
299 PRK10309 galactitol-1-phosphat 95.0 0.37 8E-06 42.2 11.2 99 32-138 159-261 (347)
300 PTZ00357 methyltransferase; Pr 94.7 0.065 1.4E-06 50.5 5.6 96 36-132 703-830 (1072)
301 cd08232 idonate-5-DH L-idonate 94.5 0.51 1.1E-05 41.0 10.8 96 33-138 165-263 (339)
302 PLN02740 Alcohol dehydrogenase 94.5 0.54 1.2E-05 41.9 11.1 99 32-138 197-301 (381)
303 cd00401 AdoHcyase S-adenosyl-L 94.4 0.52 1.1E-05 42.5 10.6 90 32-140 200-292 (413)
304 KOG2198 tRNA cytosine-5-methyl 94.4 0.39 8.5E-06 42.1 9.3 123 32-155 154-316 (375)
305 KOG2920 Predicted methyltransf 94.3 0.025 5.4E-07 47.7 1.8 48 22-69 100-153 (282)
306 PF06859 Bin3: Bicoid-interact 94.3 0.025 5.5E-07 40.7 1.6 35 100-135 1-42 (110)
307 TIGR02822 adh_fam_2 zinc-bindi 94.2 0.57 1.2E-05 40.8 10.4 90 32-138 164-255 (329)
308 cd08285 NADP_ADH NADP(H)-depen 94.1 0.78 1.7E-05 40.2 11.1 100 32-138 165-267 (351)
309 KOG4058 Uncharacterized conser 94.1 0.39 8.4E-06 36.6 7.7 41 33-73 72-113 (199)
310 KOG2539 Mitochondrial/chloropl 94.1 0.11 2.3E-06 46.9 5.3 114 33-151 200-329 (491)
311 cd05278 FDH_like Formaldehyde 94.0 0.79 1.7E-05 39.9 10.9 99 32-137 166-267 (347)
312 COG0286 HsdM Type I restrictio 93.9 0.32 7E-06 45.0 8.5 116 20-139 171-328 (489)
313 TIGR03201 dearomat_had 6-hydro 93.9 0.85 1.8E-05 40.0 10.9 99 32-138 165-273 (349)
314 COG4301 Uncharacterized conser 93.8 1.8 3.8E-05 36.1 11.5 114 34-155 79-210 (321)
315 PLN02827 Alcohol dehydrogenase 93.7 0.83 1.8E-05 40.7 10.6 100 31-138 191-296 (378)
316 cd08261 Zn_ADH7 Alcohol dehydr 93.7 1.1 2.3E-05 39.0 11.0 101 31-138 157-259 (337)
317 PLN03154 putative allyl alcoho 93.6 1.3 2.8E-05 39.0 11.5 98 32-138 157-259 (348)
318 TIGR02819 fdhA_non_GSH formald 93.6 1 2.2E-05 40.4 10.9 104 32-138 184-300 (393)
319 PLN02586 probable cinnamyl alc 93.4 0.91 2E-05 40.1 10.3 95 32-138 182-279 (360)
320 cd08300 alcohol_DH_class_III c 93.1 1.4 3E-05 39.0 11.0 99 32-138 185-289 (368)
321 KOG1098 Putative SAM-dependent 93.1 0.18 3.8E-06 47.0 5.2 112 16-139 27-160 (780)
322 PF11599 AviRa: RRNA methyltra 93.1 0.14 3E-06 41.6 4.0 59 15-73 27-95 (246)
323 COG1255 Uncharacterized protei 92.9 1.2 2.7E-05 32.3 8.2 89 33-138 13-103 (129)
324 PRK05708 2-dehydropantoate 2-r 92.8 1.3 2.9E-05 38.2 10.1 101 35-139 3-106 (305)
325 cd08236 sugar_DH NAD(P)-depend 92.8 2.6 5.6E-05 36.6 12.1 98 32-137 158-258 (343)
326 KOG2671 Putative RNA methylase 92.7 0.2 4.3E-06 43.5 4.6 108 31-139 206-356 (421)
327 cd08238 sorbose_phosphate_red 92.7 1.1 2.5E-05 40.3 9.9 98 32-136 174-287 (410)
328 TIGR02818 adh_III_F_hyde S-(hy 92.6 1.5 3.3E-05 38.8 10.5 99 32-138 184-288 (368)
329 PLN02178 cinnamyl-alcohol dehy 92.6 1.6 3.5E-05 38.8 10.7 94 33-138 178-274 (375)
330 cd08233 butanediol_DH_like (2R 92.6 2 4.2E-05 37.6 11.1 99 32-138 171-273 (351)
331 KOG2651 rRNA adenine N-6-methy 92.3 0.37 8.1E-06 42.4 5.9 41 33-73 153-194 (476)
332 PF01861 DUF43: Protein of unk 92.3 2.2 4.7E-05 35.5 10.0 99 33-139 44-150 (243)
333 cd05285 sorbitol_DH Sorbitol d 92.2 3 6.6E-05 36.3 11.9 100 32-138 161-266 (343)
334 cd08278 benzyl_alcohol_DH Benz 92.0 2.3 4.9E-05 37.6 10.9 99 32-138 185-286 (365)
335 cd08301 alcohol_DH_plants Plan 91.9 2.2 4.9E-05 37.6 10.8 99 32-138 186-290 (369)
336 KOG1122 tRNA and rRNA cytosine 91.7 1.2 2.6E-05 39.9 8.4 99 32-139 240-373 (460)
337 PF02636 Methyltransf_28: Puta 91.7 0.24 5.2E-06 41.6 4.1 40 34-73 19-68 (252)
338 cd08234 threonine_DH_like L-th 91.6 2.6 5.6E-05 36.4 10.6 97 32-138 158-258 (334)
339 COG1062 AdhC Zn-dependent alco 91.5 3.5 7.6E-05 36.0 10.8 100 32-139 184-287 (366)
340 PF03269 DUF268: Caenorhabditi 91.5 0.47 1E-05 36.7 5.0 98 34-139 2-113 (177)
341 KOG2352 Predicted spermine/spe 91.5 0.67 1.4E-05 42.2 6.7 114 34-153 296-433 (482)
342 cd08286 FDH_like_ADH2 formalde 91.4 4.1 8.9E-05 35.4 11.8 100 32-138 165-267 (345)
343 COG3129 Predicted SAM-dependen 91.4 0.25 5.3E-06 40.6 3.6 97 15-113 56-166 (292)
344 PF12692 Methyltransf_17: S-ad 91.3 0.42 9E-06 36.4 4.5 109 22-135 16-132 (160)
345 TIGR02825 B4_12hDH leukotriene 91.2 3.7 8E-05 35.4 11.2 98 32-138 137-238 (325)
346 COG0604 Qor NADPH:quinone redu 91.2 4.7 0.0001 35.2 11.7 101 31-139 140-243 (326)
347 cd05281 TDH Threonine dehydrog 91.1 3.2 6.9E-05 36.1 10.7 99 32-138 162-263 (341)
348 cd05284 arabinose_DH_like D-ar 91.0 4.3 9.4E-05 35.1 11.5 99 32-138 166-267 (340)
349 cd08294 leukotriene_B4_DH_like 90.9 4.1 8.8E-05 35.0 11.2 97 32-137 142-241 (329)
350 cd08231 MDR_TM0436_like Hypoth 90.8 4.2 9.2E-05 35.6 11.4 99 33-138 177-281 (361)
351 cd08277 liver_alcohol_DH_like 90.7 3.4 7.3E-05 36.5 10.6 99 32-138 183-287 (365)
352 cd08293 PTGR2 Prostaglandin re 90.7 3.9 8.5E-05 35.5 11.0 94 35-137 156-254 (345)
353 cd08291 ETR_like_1 2-enoyl thi 90.7 3.7 8.1E-05 35.4 10.7 90 41-138 152-243 (324)
354 cd08255 2-desacetyl-2-hydroxye 90.7 2.9 6.2E-05 35.0 9.8 92 32-138 96-191 (277)
355 cd08245 CAD Cinnamyl alcohol d 90.6 3.5 7.6E-05 35.5 10.5 94 32-137 161-256 (330)
356 COG1867 TRM1 N2,N2-dimethylgua 90.6 0.82 1.8E-05 40.2 6.2 97 34-137 53-154 (380)
357 cd08296 CAD_like Cinnamyl alco 90.5 3 6.6E-05 36.1 10.0 96 32-138 162-260 (333)
358 PLN02514 cinnamyl-alcohol dehy 90.2 2.9 6.2E-05 36.9 9.7 96 32-138 179-276 (357)
359 cd08265 Zn_ADH3 Alcohol dehydr 90.1 5 0.00011 35.7 11.2 101 31-138 201-308 (384)
360 PRK05396 tdh L-threonine 3-deh 90.0 4.9 0.00011 34.9 11.0 100 33-139 163-265 (341)
361 PRK11524 putative methyltransf 89.7 0.37 8.1E-06 41.2 3.5 41 96-137 23-80 (284)
362 TIGR00692 tdh L-threonine 3-de 89.6 8.4 0.00018 33.4 12.1 100 32-138 160-262 (340)
363 cd08279 Zn_ADH_class_III Class 89.5 5.9 0.00013 34.9 11.2 100 32-138 181-283 (363)
364 cd08242 MDR_like Medium chain 89.4 4.5 9.7E-05 34.7 10.2 88 32-135 154-243 (319)
365 COG1565 Uncharacterized conser 89.2 1.9 4.1E-05 37.9 7.4 41 32-72 76-126 (370)
366 cd08263 Zn_ADH10 Alcohol dehyd 89.1 5.7 0.00012 35.0 10.8 99 32-138 186-288 (367)
367 PRK13699 putative methylase; P 89.1 0.52 1.1E-05 39.0 3.8 42 96-138 16-73 (227)
368 cd08240 6_hydroxyhexanoate_dh_ 88.7 6.5 0.00014 34.3 10.8 96 33-137 175-274 (350)
369 PRK10083 putative oxidoreducta 88.6 6.7 0.00015 33.9 10.8 97 32-138 159-260 (339)
370 PF03686 UPF0146: Uncharacteri 88.6 1.3 2.7E-05 32.9 5.1 100 22-139 3-104 (127)
371 PRK07417 arogenate dehydrogena 88.5 1.9 4.1E-05 36.7 7.1 84 36-133 2-87 (279)
372 cd08295 double_bond_reductase_ 88.3 7.6 0.00017 33.7 10.9 97 32-137 150-251 (338)
373 COG0686 Ald Alanine dehydrogen 88.2 2.7 5.8E-05 36.3 7.4 94 33-134 167-265 (371)
374 PF02005 TRM: N2,N2-dimethylgu 88.2 0.46 1E-05 42.4 3.1 93 33-137 49-154 (377)
375 PRK01747 mnmC bifunctional tRN 87.9 1.2 2.6E-05 42.9 6.1 106 32-138 56-207 (662)
376 TIGR00675 dcm DNA-methyltransf 87.9 1.1 2.4E-05 38.9 5.3 65 37-109 1-68 (315)
377 COG4017 Uncharacterized protei 87.6 3.7 8E-05 32.9 7.4 89 32-140 43-132 (254)
378 PF05206 TRM13: Methyltransfer 87.5 1.3 2.8E-05 37.4 5.2 45 22-66 5-58 (259)
379 cd08235 iditol_2_DH_like L-idi 87.4 9.6 0.00021 33.0 11.1 99 32-137 164-265 (343)
380 PF00145 DNA_methylase: C-5 cy 87.3 0.49 1.1E-05 40.9 2.8 66 36-111 2-72 (335)
381 TIGR00936 ahcY adenosylhomocys 87.1 5.9 0.00013 35.7 9.5 91 32-141 193-286 (406)
382 cd08287 FDH_like_ADH3 formalde 86.9 11 0.00024 32.6 11.2 98 32-137 167-268 (345)
383 cd08269 Zn_ADH9 Alcohol dehydr 86.9 13 0.00028 31.5 11.4 100 32-138 128-230 (312)
384 COG1748 LYS9 Saccharopine dehy 86.7 4 8.7E-05 36.5 8.1 69 35-107 2-75 (389)
385 cd08260 Zn_ADH6 Alcohol dehydr 86.6 9.6 0.00021 33.1 10.6 99 32-138 164-265 (345)
386 PRK09422 ethanol-active dehydr 86.4 11 0.00024 32.5 10.9 97 32-138 161-262 (338)
387 PRK05476 S-adenosyl-L-homocyst 86.3 5.9 0.00013 36.0 9.1 91 33-142 211-304 (425)
388 TIGR00518 alaDH alanine dehydr 86.2 2.6 5.6E-05 37.6 6.7 99 33-137 166-267 (370)
389 COG2933 Predicted SAM-dependen 86.1 3.9 8.5E-05 34.5 7.1 89 32-133 210-298 (358)
390 PRK10458 DNA cytosine methylas 85.8 5.1 0.00011 36.9 8.5 39 34-72 88-127 (467)
391 COG0569 TrkA K+ transport syst 85.8 3.4 7.4E-05 34.0 6.8 71 35-108 1-74 (225)
392 cd05286 QOR2 Quinone oxidoredu 85.7 15 0.00032 30.9 11.2 98 32-138 135-236 (320)
393 PF07279 DUF1442: Protein of u 85.7 18 0.00038 29.6 10.5 104 20-135 29-146 (218)
394 cd05279 Zn_ADH1 Liver alcohol 85.6 12 0.00025 33.0 10.7 100 32-138 182-286 (365)
395 PRK10669 putative cation:proto 85.6 8.4 0.00018 36.3 10.2 94 35-137 418-515 (558)
396 PF03514 GRAS: GRAS domain fam 85.3 6.1 0.00013 35.3 8.7 120 33-153 110-263 (374)
397 cd08284 FDH_like_2 Glutathione 84.9 14 0.0003 32.0 10.7 100 32-139 166-268 (344)
398 PF02254 TrkA_N: TrkA-N domain 84.8 2.8 6.1E-05 30.1 5.4 88 42-138 4-97 (116)
399 PF11899 DUF3419: Protein of u 84.6 2.7 5.8E-05 37.6 6.0 59 75-141 275-338 (380)
400 cd08289 MDR_yhfp_like Yhfp put 84.5 15 0.00032 31.4 10.7 96 33-138 146-244 (326)
401 PF02558 ApbA: Ketopantoate re 84.4 2.5 5.4E-05 32.0 5.1 98 37-139 1-103 (151)
402 PF02153 PDH: Prephenate dehyd 84.3 9.6 0.00021 32.0 9.1 74 47-134 1-76 (258)
403 cd08241 QOR1 Quinone oxidoredu 84.1 18 0.00038 30.5 10.9 97 32-137 138-238 (323)
404 KOG3924 Putative protein methy 84.0 2 4.3E-05 38.1 4.8 119 11-136 164-307 (419)
405 cd08298 CAD2 Cinnamyl alcohol 83.9 18 0.00038 31.1 10.9 89 32-137 166-256 (329)
406 KOG0022 Alcohol dehydrogenase, 83.8 13 0.00029 32.2 9.5 100 31-138 190-295 (375)
407 PF08484 Methyltransf_14: C-me 83.5 6.8 0.00015 30.4 7.2 114 4-136 42-158 (160)
408 cd08243 quinone_oxidoreductase 83.5 20 0.00044 30.3 11.0 95 32-137 141-238 (320)
409 cd08256 Zn_ADH2 Alcohol dehydr 83.5 20 0.00044 31.2 11.2 98 32-137 173-274 (350)
410 cd05283 CAD1 Cinnamyl alcohol 83.5 13 0.00029 32.2 9.9 95 32-138 168-264 (337)
411 PRK11064 wecC UDP-N-acetyl-D-m 83.0 9.7 0.00021 34.5 9.1 39 35-73 4-44 (415)
412 PRK03562 glutathione-regulated 82.9 11 0.00025 36.0 9.9 94 34-137 400-498 (621)
413 cd08282 PFDH_like Pseudomonas 82.9 21 0.00046 31.5 11.2 102 32-137 175-285 (375)
414 cd05288 PGDH Prostaglandin deh 82.7 24 0.00052 30.2 11.2 97 32-137 144-244 (329)
415 COG0270 Dcm Site-specific DNA 82.7 4.5 9.8E-05 35.3 6.7 71 34-111 3-78 (328)
416 cd08292 ETR_like_2 2-enoyl thi 82.7 20 0.00042 30.6 10.6 97 32-137 138-238 (324)
417 PRK06035 3-hydroxyacyl-CoA deh 82.6 7.5 0.00016 33.2 7.9 38 35-72 4-43 (291)
418 PRK09260 3-hydroxybutyryl-CoA 82.5 7.5 0.00016 33.2 7.8 37 36-72 3-41 (288)
419 PRK07502 cyclohexadienyl dehyd 82.3 8.2 0.00018 33.3 8.1 88 35-135 7-98 (307)
420 PRK09496 trkA potassium transp 82.2 8.1 0.00018 35.1 8.4 72 33-107 230-304 (453)
421 PRK08306 dipicolinate synthase 82.1 10 0.00022 32.7 8.4 90 33-138 151-242 (296)
422 cd08246 crotonyl_coA_red croto 82.1 20 0.00044 31.8 10.8 99 32-138 192-316 (393)
423 PRK08177 short chain dehydroge 82.1 12 0.00026 30.2 8.7 74 35-109 2-80 (225)
424 cd08274 MDR9 Medium chain dehy 82.1 22 0.00047 30.8 10.8 94 32-137 176-273 (350)
425 PRK08293 3-hydroxybutyryl-CoA 82.0 5.9 0.00013 33.8 7.0 38 35-72 4-43 (287)
426 PRK06522 2-dehydropantoate 2-r 82.0 10 0.00022 32.3 8.6 94 36-137 2-100 (304)
427 PLN02702 L-idonate 5-dehydroge 82.0 23 0.00049 31.1 11.0 100 32-138 180-286 (364)
428 PTZ00354 alcohol dehydrogenase 81.9 26 0.00057 29.9 11.2 98 32-137 139-240 (334)
429 PRK10754 quinone oxidoreductas 81.5 29 0.00063 29.7 11.4 99 32-138 139-240 (327)
430 PRK03659 glutathione-regulated 81.0 15 0.00034 35.0 10.0 96 34-138 400-499 (601)
431 PF11312 DUF3115: Protein of u 80.9 1.8 3.8E-05 37.3 3.3 38 100-138 200-243 (315)
432 KOG2078 tRNA modification enzy 80.6 1.2 2.6E-05 39.9 2.2 47 27-73 243-289 (495)
433 PF02086 MethyltransfD12: D12 80.3 1.9 4.2E-05 35.9 3.4 51 22-72 7-59 (260)
434 COG0863 DNA modification methy 80.1 6.1 0.00013 33.7 6.5 57 17-73 205-262 (302)
435 PRK05808 3-hydroxybutyryl-CoA 79.9 12 0.00025 31.9 8.1 87 36-135 5-116 (282)
436 cd08297 CAD3 Cinnamyl alcohol 79.3 34 0.00075 29.5 11.1 99 32-138 164-266 (341)
437 COG1893 ApbA Ketopantoate redu 79.1 22 0.00047 30.8 9.5 113 35-153 1-116 (307)
438 cd08266 Zn_ADH_like1 Alcohol d 79.1 38 0.00082 28.8 11.3 98 32-137 165-265 (342)
439 PRK12921 2-dehydropantoate 2-r 78.9 24 0.00052 30.1 9.8 93 36-136 2-101 (305)
440 PF03721 UDPG_MGDP_dh_N: UDP-g 78.4 4.5 9.8E-05 32.2 4.8 39 35-73 1-41 (185)
441 cd08268 MDR2 Medium chain dehy 78.2 37 0.00079 28.7 10.8 99 32-138 143-244 (328)
442 PRK05786 fabG 3-ketoacyl-(acyl 78.0 34 0.00074 27.6 10.2 102 34-138 5-136 (238)
443 PLN02494 adenosylhomocysteinas 77.5 24 0.00053 32.5 9.6 100 32-149 252-354 (477)
444 KOG0821 Predicted ribosomal RN 77.4 3.7 8E-05 33.6 3.9 39 33-71 50-89 (326)
445 PF06460 NSP13: Coronavirus NS 77.3 13 0.00029 31.2 7.2 108 32-155 60-186 (299)
446 TIGR02817 adh_fam_1 zinc-bindi 77.3 42 0.00091 28.8 11.0 94 34-136 149-246 (336)
447 cd05213 NAD_bind_Glutamyl_tRNA 77.1 18 0.00039 31.3 8.6 67 33-109 177-247 (311)
448 PF05575 V_cholerae_RfbT: Vibr 77.0 4.6 0.0001 31.5 4.2 57 16-72 62-120 (286)
449 cd08276 MDR7 Medium chain dehy 77.0 45 0.00096 28.4 11.1 99 32-138 159-260 (336)
450 cd05289 MDR_like_2 alcohol deh 76.8 43 0.00092 28.0 10.8 94 32-138 143-239 (309)
451 PLN02256 arogenate dehydrogena 76.6 24 0.00052 30.5 9.1 99 18-133 22-123 (304)
452 PRK06249 2-dehydropantoate 2-r 76.3 17 0.00038 31.3 8.2 99 34-138 5-107 (313)
453 PRK07530 3-hydroxybutyryl-CoA 76.1 16 0.00034 31.2 7.9 38 35-72 5-44 (292)
454 PF05050 Methyltransf_21: Meth 75.9 4 8.6E-05 31.1 3.8 35 39-73 1-41 (167)
455 PRK05562 precorrin-2 dehydroge 75.7 36 0.00078 28.0 9.4 87 33-135 24-114 (223)
456 PF01408 GFO_IDH_MocA: Oxidore 75.1 22 0.00048 25.4 7.4 89 36-139 2-95 (120)
457 COG0287 TyrA Prephenate dehydr 75.0 16 0.00034 31.2 7.4 88 35-134 4-95 (279)
458 PRK12742 oxidoreductase; Provi 74.6 42 0.00092 27.0 9.9 102 34-137 6-131 (237)
459 PRK07066 3-hydroxybutyryl-CoA 74.6 11 0.00023 33.0 6.4 95 35-135 8-117 (321)
460 TIGR00872 gnd_rel 6-phosphoglu 74.5 23 0.0005 30.4 8.5 86 36-133 2-89 (298)
461 KOG0023 Alcohol dehydrogenase, 74.3 43 0.00092 29.3 9.6 96 32-138 180-280 (360)
462 TIGR02437 FadB fatty oxidation 74.0 16 0.00034 35.7 8.0 97 35-137 314-428 (714)
463 cd08299 alcohol_DH_class_I_II_ 73.7 46 0.001 29.4 10.5 99 32-138 189-293 (373)
464 PF07652 Flavi_DEAD: Flaviviru 73.7 38 0.00083 25.9 10.1 83 34-117 5-111 (148)
465 TIGR02356 adenyl_thiF thiazole 73.7 46 0.00099 26.8 9.5 31 34-64 21-54 (202)
466 cd05282 ETR_like 2-enoyl thioe 73.4 42 0.00092 28.4 10.0 97 32-137 137-237 (323)
467 PRK06130 3-hydroxybutyryl-CoA 73.1 27 0.00059 30.0 8.6 38 35-72 5-44 (311)
468 cd05280 MDR_yhdh_yhfp Yhdh and 73.0 57 0.0012 27.6 10.8 95 34-138 147-244 (325)
469 PRK08265 short chain dehydroge 73.0 32 0.0007 28.5 8.9 75 34-109 6-89 (261)
470 cd08244 MDR_enoyl_red Possible 73.0 57 0.0012 27.6 11.2 98 32-138 141-242 (324)
471 KOG1253 tRNA methyltransferase 72.9 5.5 0.00012 36.5 4.3 102 32-137 108-216 (525)
472 TIGR02441 fa_ox_alpha_mit fatt 72.9 16 0.00034 35.9 7.7 96 35-137 336-450 (737)
473 cd08250 Mgc45594_like Mgc45594 72.9 59 0.0013 27.7 11.3 97 32-137 138-237 (329)
474 PF02826 2-Hacid_dh_C: D-isome 72.9 7.5 0.00016 30.6 4.7 88 33-134 35-124 (178)
475 TIGR02823 oxido_YhdH putative 72.6 54 0.0012 27.9 10.4 96 32-138 143-242 (323)
476 PTZ00075 Adenosylhomocysteinas 71.8 9.4 0.0002 35.1 5.6 88 33-139 253-343 (476)
477 PRK08324 short chain dehydroge 71.8 34 0.00073 33.2 9.7 103 34-138 422-558 (681)
478 PF11899 DUF3419: Protein of u 71.7 12 0.00026 33.5 6.1 41 31-72 33-74 (380)
479 TIGR00027 mthyl_TIGR00027 meth 71.6 39 0.00085 28.5 9.0 118 15-139 65-199 (260)
480 COG2910 Putative NADH-flavin r 71.6 11 0.00024 30.1 5.1 82 42-131 7-96 (211)
481 PF01262 AlaDh_PNT_C: Alanine 70.5 6.4 0.00014 30.7 3.8 97 33-134 19-136 (168)
482 PRK00094 gpsA NAD(P)H-dependen 70.3 53 0.0011 28.2 9.9 93 36-135 3-103 (325)
483 cd08258 Zn_ADH4 Alcohol dehydr 70.2 68 0.0015 27.3 10.5 99 32-138 163-265 (306)
484 cd08262 Zn_ADH8 Alcohol dehydr 70.2 71 0.0015 27.5 11.2 100 32-138 160-265 (341)
485 PRK11730 fadB multifunctional 70.2 25 0.00054 34.4 8.4 95 35-135 314-426 (715)
486 cd08249 enoyl_reductase_like e 69.9 49 0.0011 28.6 9.6 98 32-138 153-255 (339)
487 PRK06182 short chain dehydroge 69.7 36 0.00078 28.4 8.5 74 34-110 3-84 (273)
488 cd08252 AL_MDR Arginate lyase 69.6 71 0.0015 27.3 10.7 95 34-137 150-248 (336)
489 PRK09496 trkA potassium transp 69.3 17 0.00037 33.0 6.8 92 36-135 2-97 (453)
490 PRK07576 short chain dehydroge 69.0 54 0.0012 27.2 9.4 74 33-108 8-94 (264)
491 smart00829 PKS_ER Enoylreducta 68.5 65 0.0014 26.4 10.8 99 32-138 103-206 (288)
492 PF10237 N6-adenineMlase: Prob 68.5 49 0.0011 25.7 8.2 111 19-138 7-124 (162)
493 PRK08655 prephenate dehydrogen 68.0 28 0.00062 31.8 7.9 84 36-134 2-89 (437)
494 PLN02545 3-hydroxybutyryl-CoA 67.9 28 0.00061 29.7 7.5 37 35-71 5-43 (295)
495 TIGR01751 crot-CoA-red crotony 67.0 92 0.002 27.7 11.0 99 32-138 188-311 (398)
496 COG1179 Dinucleotide-utilizing 67.0 21 0.00045 29.9 6.0 71 35-107 31-128 (263)
497 TIGR03026 NDP-sugDHase nucleot 66.5 1E+02 0.0022 27.8 11.2 38 36-73 2-41 (411)
498 TIGR01470 cysG_Nterm siroheme 66.3 48 0.001 26.8 8.1 86 33-134 8-97 (205)
499 PRK13771 putative alcohol dehy 66.0 45 0.00097 28.6 8.6 93 32-138 161-256 (334)
500 PF04072 LCM: Leucine carboxyl 65.3 33 0.00072 27.0 7.0 105 15-120 60-177 (183)
No 1
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=100.00 E-value=2.9e-44 Score=286.35 Aligned_cols=259 Identities=42% Similarity=0.748 Sum_probs=228.5
Q ss_pred ChhHHHHHHHHHhhhCCCCcHHHHHHHHhhCCCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcCCCceEE
Q 024647 1 MAELFIKQAKQYAETRPNYPEELFKFITSKTTNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKLPNIRYE 80 (265)
Q Consensus 1 ~~~~f~~~a~~Y~~~rp~y~~~l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~ 80 (265)
|+.+|..+|+.|..+||.||.+.+..+.........++|+|||+|+.++.+++++.+|+|+|+|+.|++.|++.+++...
T Consensus 1 ~~~~~~~~a~~Y~~ARP~YPtdw~~~ia~~~~~h~~a~DvG~G~Gqa~~~iae~~k~VIatD~s~~mL~~a~k~~~~~y~ 80 (261)
T KOG3010|consen 1 MAKLFDKQAADYLNARPSYPTDWFKKIASRTEGHRLAWDVGTGNGQAARGIAEHYKEVIATDVSEAMLKVAKKHPPVTYC 80 (261)
T ss_pred CcccccccHHHHhhcCCCCcHHHHHHHHhhCCCcceEEEeccCCCcchHHHHHhhhhheeecCCHHHHHHhhcCCCcccc
Confidence 78899999999999999999999999998877666899999999999999999999999999999999999998888887
Q ss_pred ecCCccchhhhhhccCCCCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEecC-CCCCChHHHHhhcccccCCC
Q 024647 81 LTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCYT-VPEVNVSVDAVFQPFYTVDS 159 (265)
Q Consensus 81 ~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~~-~~~~~~~~~~~~~~~~~~~~ 159 (265)
..+..+...++..+--.++++|+|+|++|+||||.+.+++++.|+||++||++++|+++ +....++...++.+++. ..
T Consensus 81 ~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HWFdle~fy~~~~rvLRk~Gg~iavW~Y~dd~v~~pE~dsv~~r~~~-~~ 159 (261)
T KOG3010|consen 81 HTPSTMSSDEMVDLLGGEESVDLITAAQAVHWFDLERFYKEAYRVLRKDGGLIAVWNYNDDFVDWPEFDSVMLRLYD-ST 159 (261)
T ss_pred cCCccccccccccccCCCcceeeehhhhhHHhhchHHHHHHHHHHcCCCCCEEEEEEccCCCcCCHHHHHHHHHHhh-cc
Confidence 77766665555555445889999999999999999999999999999777799999999 44558999999998887 68
Q ss_pred CCCcc-hhhhhhhhccCCCCCCCCCCCCCCCCCCCccceeeeccCHHHHHHHHHhhhHHHHHHHhCCccchHHHHHHHHH
Q 024647 160 DPFWE-PQRKLVDNKYMTIDFPFEPVDGADSTGPFDRFVIEKTMDLEGYFSYIRSWSAYQTAKDKGVELLTENVIENFRR 238 (265)
Q Consensus 160 ~~~~~-~~~~~~~~~~~~~~~~f~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~~~~~~~~~~l~~~~~~~l~~ 238 (265)
.|||. |...++-+.|..+.|||+.+.-.-...+. .+.+...++++++.++++|||.+..+++++.+++.+.++.++++
T Consensus 160 ~p~~r~~~~n~~fdgy~~~~F~~e~v~~~s~~~~~-~l~~~~~lsl~~F~~~~rsws~~~~akek~~e~i~~~~I~e~~~ 238 (261)
T KOG3010|consen 160 LPYWRSPLRNLLFDGYKTIEFPFESVGMGSQGKPK-TLEIPHTLSLEGFSGFLRSWSAYKEAKEKGLELIADIFIPEFEE 238 (261)
T ss_pred CchhhhHHHHhhccccccccccccccCCCCCCCce-eehhhHHHHHHHHHHHHhCcHHHHHHHhcChHHHHHHHHHHHHh
Confidence 88865 77888889999999999988643222233 78889999999999999999999999999999999999999999
Q ss_pred HhccCCCccEEEEEeeEEEEeecC
Q 024647 239 AWNEDGQSRKVVRFPIYLRIGKVG 262 (265)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~ark~ 262 (265)
.|+++. ....|.|.+++..||++
T Consensus 239 ~~~~~~-~~~~V~y~tf~~~gk~~ 261 (261)
T KOG3010|consen 239 AWGEDN-LVKTVVYSTFMLLGKVR 261 (261)
T ss_pred hccccc-ceeEEEeeeeeeecccC
Confidence 999874 46899999999999974
No 2
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.92 E-value=2.2e-23 Score=175.20 Aligned_cols=233 Identities=17% Similarity=0.260 Sum_probs=158.7
Q ss_pred hhHHHHHHHHHhhhCCCCcHHHHHHHHhhCC--CCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcC-CCce
Q 024647 2 AELFIKQAKQYAETRPNYPEELFKFITSKTT--NHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKL-PNIR 78 (265)
Q Consensus 2 ~~~f~~~a~~Y~~~rp~y~~~l~~~l~~~~~--~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-~~~~ 78 (265)
++.|+++|.+|++.... .....+.+.+..+ +..+|||+|||+|.++..+++.+.+|+++|+|+.|++.+++. ....
T Consensus 10 ~~~F~~aa~~Y~~~~~~-q~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~l~~a~~~~~~~~ 88 (251)
T PRK10258 10 AAAFGRAAAHYEQHAEL-QRQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPMLAQARQKDAADH 88 (251)
T ss_pred HHHHHHHHHhHhHHHHH-HHHHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCCCCC
Confidence 47899999999986443 3444555555443 457899999999999999998889999999999999999863 3345
Q ss_pred EEecCCccchhhhhhccCCCCceeEEEeccccccC-ChhHHHHHHHHHhcCCCcEEEEEecCCCCCChHHHHhhcccccC
Q 024647 79 YELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWF-DLPQFYNQVKWVLKKPNGVIATWCYTVPEVNVSVDAVFQPFYTV 157 (265)
Q Consensus 79 ~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~ 157 (265)
+.. +|++.+++++++||+|+++.++||+ |+..++.++.++|+ |||.+++..+....+ ..+...+......
T Consensus 89 ~~~-------~d~~~~~~~~~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk-~gG~l~~~~~~~~~~-~el~~~~~~~~~~ 159 (251)
T PRK10258 89 YLA-------GDIESLPLATATFDLAWSNLAVQWCGNLSTALRELYRVVR-PGGVVAFTTLVQGSL-PELHQAWQAVDER 159 (251)
T ss_pred EEE-------cCcccCcCCCCcEEEEEECchhhhcCCHHHHHHHHHHHcC-CCeEEEEEeCCCCch-HHHHHHHHHhccC
Confidence 555 7778888888899999999999999 89999999999999 999999988775553 4555554433221
Q ss_pred -CCCCCcchhhhhhhhccCCCCCCCCCCCCCCCCCCCccceeeeccCHHHHHHHHHhhhHHHHHH---HhCCccchHHHH
Q 024647 158 -DSDPFWEPQRKLVDNKYMTIDFPFEPVDGADSTGPFDRFVIEKTMDLEGYFSYIRSWSAYQTAK---DKGVELLTENVI 233 (265)
Q Consensus 158 -~~~~~~~~~~~~~~~~~~~~~~~f~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~~~~---~~~~~~l~~~~~ 233 (265)
...++..+ ..+.+.+...+ +. .-....+++.++..+++++.....+.. ..++..+....+
T Consensus 160 ~~~~~~~~~--~~l~~~l~~~~--~~------------~~~~~~~~~f~~~~~~l~~lk~~G~~~~~~~~~~~~~~~~~~ 223 (251)
T PRK10258 160 PHANRFLPP--DAIEQALNGWR--YQ------------HHIQPITLWFDDALSAMRSLKGIGATHLHEGRDPRILTRSQL 223 (251)
T ss_pred CccccCCCH--HHHHHHHHhCC--ce------------eeeeEEEEECCCHHHHHHHHHHhCCCCCCCCCCCCCCcHHHH
Confidence 11222221 11122221111 11 111224445666666666655554432 123456666667
Q ss_pred HHHHHHhccCCCccEEEEEeeEEEEeec
Q 024647 234 ENFRRAWNEDGQSRKVVRFPIYLRIGKV 261 (265)
Q Consensus 234 ~~l~~~~~~~~~~~~~~~~~~~~~~ark 261 (265)
+.+.+.|.... +.++++|.+++..++|
T Consensus 224 ~~~~~~~~~~~-g~~~lty~v~~~~~~~ 250 (251)
T PRK10258 224 QRLQLAWPQQQ-GRYPLTYHLFLGVIER 250 (251)
T ss_pred HHHHHhccccC-CCcceEEEEEEEEEEc
Confidence 77777776533 2589999999988776
No 3
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.91 E-value=4.6e-24 Score=174.75 Aligned_cols=143 Identities=22% Similarity=0.359 Sum_probs=113.7
Q ss_pred hhHHHHHHHHHhhhCCCC--------cHHHHHHHHhhCCCCCeEEEEcCCcchhHHHHHhcC--CcEEEEcCCHHHHHHH
Q 024647 2 AELFIKQAKQYAETRPNY--------PEELFKFITSKTTNHELAWDVGTGSGQAAASLSGIF--ENVIGTETSPKQIEFA 71 (265)
Q Consensus 2 ~~~f~~~a~~Y~~~rp~y--------~~~l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a 71 (265)
.+.|++.|..||..-.-. .++++.++. .+++.+|||||||||..+..+++.. .+|+|+|+|+.|++.+
T Consensus 14 ~~vF~~ia~~YD~~n~~~S~g~~~~Wr~~~i~~~~--~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a 91 (238)
T COG2226 14 QKVFDKVAKKYDLMNDLMSFGLHRLWRRALISLLG--IKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVA 91 (238)
T ss_pred HHHHHhhHHHHHhhcccccCcchHHHHHHHHHhhC--CCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHH
Confidence 367999999999965322 122222222 1368999999999999999999987 5899999999999999
Q ss_pred HcC-C-----CceEEecCCccchhhhhhccCCCCceeEEEeccccccC-ChhHHHHHHHHHhcCCCcEEEEEecCCCCCC
Q 024647 72 TKL-P-----NIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWF-DLPQFYNQVKWVLKKPNGVIATWCYTVPEVN 144 (265)
Q Consensus 72 ~~~-~-----~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~~~~~~~~ 144 (265)
++. . +++|+. +|++++|+++++||+|+++++++++ |++++|+|++|+|| |||.+++.....+. .
T Consensus 92 ~~k~~~~~~~~i~fv~-------~dAe~LPf~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlK-pgG~~~vle~~~p~-~ 162 (238)
T COG2226 92 REKLKKKGVQNVEFVV-------GDAENLPFPDNSFDAVTISFGLRNVTDIDKALKEMYRVLK-PGGRLLVLEFSKPD-N 162 (238)
T ss_pred HHHhhccCccceEEEE-------echhhCCCCCCccCEEEeeehhhcCCCHHHHHHHHHHhhc-CCeEEEEEEcCCCC-c
Confidence 863 2 255666 8899999999999999999999999 99999999999999 99999988777554 3
Q ss_pred hHHHHhhcccc
Q 024647 145 VSVDAVFQPFY 155 (265)
Q Consensus 145 ~~~~~~~~~~~ 155 (265)
..+...+..++
T Consensus 163 ~~~~~~~~~~~ 173 (238)
T COG2226 163 PVLRKAYILYY 173 (238)
T ss_pred hhhHHHHHHHH
Confidence 44455444443
No 4
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.88 E-value=1.2e-21 Score=165.09 Aligned_cols=232 Identities=14% Similarity=0.202 Sum_probs=141.8
Q ss_pred HHHHhh---hCCCCcHHHHHHHHhhCCCCCeEEEEcCCcchhHHHHHhcC--CcEEEEcCCHHHHHHHHcCCCceEEecC
Q 024647 9 AKQYAE---TRPNYPEELFKFITSKTTNHELAWDVGTGSGQAAASLSGIF--ENVIGTETSPKQIEFATKLPNIRYELTS 83 (265)
Q Consensus 9 a~~Y~~---~rp~y~~~l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~ 83 (265)
++.|.+ .|+.+...+++.+. ..++.+|||+|||+|.++..+++.+ .+|+|+|+|+.|++.|++ .++.+..
T Consensus 4 ~~~y~~~~~~~~~~~~~ll~~l~--~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~-~~~~~~~-- 78 (255)
T PRK14103 4 PDVYLAFADHRGRPFYDLLARVG--AERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARE-RGVDART-- 78 (255)
T ss_pred HHHHHHHHhHhhCHHHHHHHhCC--CCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHh-cCCcEEE--
Confidence 455555 34443344444432 2456889999999999999999884 579999999999999986 4677777
Q ss_pred CccchhhhhhccCCCCceeEEEeccccccC-ChhHHHHHHHHHhcCCCcEEEEEecCCCC--CChHHHHhhc--ccccC-
Q 024647 84 PAMSIAELEQNVAAQSTVDLVTIAQAMHWF-DLPQFYNQVKWVLKKPNGVIATWCYTVPE--VNVSVDAVFQ--PFYTV- 157 (265)
Q Consensus 84 ~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~~~~~~--~~~~~~~~~~--~~~~~- 157 (265)
+|++.++ ++++||+|+++.++||+ |+..+++++.++|| |||.+++..+.... .......+.. .+...
T Consensus 79 -----~d~~~~~-~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~Lk-pgG~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 151 (255)
T PRK14103 79 -----GDVRDWK-PKPDTDVVVSNAALQWVPEHADLLVRWVDELA-PGSWIAVQVPGNFDAPSHAAVRALARREPWAKLL 151 (255)
T ss_pred -----cChhhCC-CCCCceEEEEehhhhhCCCHHHHHHHHHHhCC-CCcEEEEEcCCCcCChhHHHHHHHhccCchhHHh
Confidence 6667664 56799999999999999 88999999999999 99999886543211 1111111110 11100
Q ss_pred CCCCC----cchhhhhhhhccCCCCCCCCCCCCCCCCCCCccceeeecc-CHHHHHHHHHhhh---HHHHHHHhCCccch
Q 024647 158 DSDPF----WEPQRKLVDNKYMTIDFPFEPVDGADSTGPFDRFVIEKTM-DLEGYFSYIRSWS---AYQTAKDKGVELLT 229 (265)
Q Consensus 158 ~~~~~----~~~~~~~~~~~~~~~~~~f~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~s---~~~~~~~~~~~~l~ 229 (265)
...++ .......+.+.+...||...... . .....+ ..+.+.+++...+ ....+.++..+.+.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~l~~aGf~v~~~~---------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 221 (255)
T PRK14103 152 RDIPFRVGAVVQTPAGYAELLTDAGCKVDAWE---------T-TYVHQLTGEDPVLDWITGTALRPVRERLSDDSWEQFR 221 (255)
T ss_pred cccccccCcCCCCHHHHHHHHHhCCCeEEEEe---------e-eeeeeCCCchhhhhhhhccchhhhhhhCCHHHHHHHH
Confidence 00011 00111223344455553211111 0 111122 2455677765433 22333344556667
Q ss_pred HHHHHHHHHHhccCCCccEEEEEeeEEEEeecC
Q 024647 230 ENVIENFRRAWNEDGQSRKVVRFPIYLRIGKVG 262 (265)
Q Consensus 230 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ark~ 262 (265)
+++.+.+.+.+.....+.+...|.....+|+|+
T Consensus 222 ~~~~~~l~~~~~~~~~g~~~~~~~~~~~~a~~~ 254 (255)
T PRK14103 222 AELIPLLREAYPPRADGTTFFPFRRVFVVARVG 254 (255)
T ss_pred HHHHHHHHHHCCCCCCCcEEeeeccEEEEEEeC
Confidence 767777777754222125778999999999996
No 5
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.88 E-value=1.5e-22 Score=167.26 Aligned_cols=149 Identities=23% Similarity=0.391 Sum_probs=87.6
Q ss_pred hhHHHHHHHHHhhhCCC--------CcHHHHHHHHhhCCCCCeEEEEcCCcchhHHHHHhcC---CcEEEEcCCHHHHHH
Q 024647 2 AELFIKQAKQYAETRPN--------YPEELFKFITSKTTNHELAWDVGTGSGQAAASLSGIF---ENVIGTETSPKQIEF 70 (265)
Q Consensus 2 ~~~f~~~a~~Y~~~rp~--------y~~~l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~ 70 (265)
.+.|++.|..||....- .-..+++.+ ...++.+|||+|||||.++..++++. .+|+|+|+|+.|++.
T Consensus 10 ~~~Fd~ia~~YD~~n~~ls~g~~~~wr~~~~~~~--~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~ 87 (233)
T PF01209_consen 10 RKMFDRIAPRYDRMNDLLSFGQDRRWRRKLIKLL--GLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEV 87 (233)
T ss_dssp ---------------------------SHHHHHH--T--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHH
T ss_pred HHHHHHHHHHhCCCccccCCcHHHHHHHHHHhcc--CCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHH
Confidence 36799999999984221 112223222 23467899999999999999999864 379999999999999
Q ss_pred HHc------CCCceEEecCCccchhhhhhccCCCCceeEEEeccccccC-ChhHHHHHHHHHhcCCCcEEEEEecCCCCC
Q 024647 71 ATK------LPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWF-DLPQFYNQVKWVLKKPNGVIATWCYTVPEV 143 (265)
Q Consensus 71 a~~------~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~~~~~~~ 143 (265)
|++ ..++++++ +|++++|+++++||+|++++++|.+ |+.++++|+.|+|| |||.+++..+..+.
T Consensus 88 a~~k~~~~~~~~i~~v~-------~da~~lp~~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLk-PGG~l~ile~~~p~- 158 (233)
T PF01209_consen 88 ARKKLKREGLQNIEFVQ-------GDAEDLPFPDNSFDAVTCSFGLRNFPDRERALREMYRVLK-PGGRLVILEFSKPR- 158 (233)
T ss_dssp HHHHHHHTT--SEEEEE--------BTTB--S-TT-EEEEEEES-GGG-SSHHHHHHHHHHHEE-EEEEEEEEEEEB-S-
T ss_pred HHHHHHhhCCCCeeEEE-------cCHHHhcCCCCceeEEEHHhhHHhhCCHHHHHHHHHHHcC-CCeEEEEeeccCCC-
Confidence 985 24778887 8889999999999999999999998 99999999999999 99999988877655
Q ss_pred ChHHHHhhcccccCCCCCC
Q 024647 144 NVSVDAVFQPFYTVDSDPF 162 (265)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~ 162 (265)
...+..++.-+.. ...|.
T Consensus 159 ~~~~~~~~~~y~~-~ilP~ 176 (233)
T PF01209_consen 159 NPLLRALYKFYFK-YILPL 176 (233)
T ss_dssp SHHHHHHHHH---------
T ss_pred Cchhhceeeeeec-ccccc
Confidence 4566666554443 34443
No 6
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.86 E-value=3.2e-20 Score=156.61 Aligned_cols=236 Identities=13% Similarity=0.216 Sum_probs=140.8
Q ss_pred HHHHHhhhCCCCcHHHHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhcC--CcEEEEcCCHHHHHHHHc-CCCceEEec
Q 024647 8 QAKQYAETRPNYPEELFKFITSKT--TNHELAWDVGTGSGQAAASLSGIF--ENVIGTETSPKQIEFATK-LPNIRYELT 82 (265)
Q Consensus 8 ~a~~Y~~~rp~y~~~l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~-~~~~~~~~~ 82 (265)
.|+.|++..+.. .+....+.... .++.+|||+|||+|.++..+++.+ .+|+|+|+|+.|++.+++ .+++.+..
T Consensus 5 ~~~~Y~~~~~~~-~~~~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~- 82 (258)
T PRK01683 5 NPSLYLKFEDER-TRPARDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVE- 82 (258)
T ss_pred CHHHHHHHHHHh-hcHHHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEE-
Confidence 356676644431 12232333332 456899999999999999999875 579999999999999986 35677777
Q ss_pred CCccchhhhhhccCCCCceeEEEeccccccC-ChhHHHHHHHHHhcCCCcEEEEEecCCCC-CC-hHHHHhh-----ccc
Q 024647 83 SPAMSIAELEQNVAAQSTVDLVTIAQAMHWF-DLPQFYNQVKWVLKKPNGVIATWCYTVPE-VN-VSVDAVF-----QPF 154 (265)
Q Consensus 83 ~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~~~~~~-~~-~~~~~~~-----~~~ 154 (265)
+|+..+. ++++||+|+++.++||+ |+..+++++.++|+ |||.+++..+.... .. ..+.++. ...
T Consensus 83 ------~d~~~~~-~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~Lk-pgG~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 154 (258)
T PRK01683 83 ------ADIASWQ-PPQALDLIFANASLQWLPDHLELFPRLVSLLA-PGGVLAVQMPDNLDEPSHVLMREVAENGPWEQN 154 (258)
T ss_pred ------CchhccC-CCCCccEEEEccChhhCCCHHHHHHHHHHhcC-CCcEEEEECCCCCCCHHHHHHHHHHccCchHHH
Confidence 5666553 45699999999999999 88999999999999 99999886543111 11 1111111 111
Q ss_pred ccC-CCCCCcchhhhhhhhccCCCCCCCCCCCCCCCCCCCccceeeecc-CHHHHHHHHHhhhHH---HHHHHhCCccch
Q 024647 155 YTV-DSDPFWEPQRKLVDNKYMTIDFPFEPVDGADSTGPFDRFVIEKTM-DLEGYFSYIRSWSAY---QTAKDKGVELLT 229 (265)
Q Consensus 155 ~~~-~~~~~~~~~~~~~~~~~~~~~~~f~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~s~~---~~~~~~~~~~l~ 229 (265)
+.. ...+...+......+.+...++-. .+. .......+ +.+++.+++++.+.. ..+.+..++.+.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~l~~~g~~v-~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~f~ 224 (258)
T PRK01683 155 LPDRGARRAPLPPPHAYYDALAPAACRV-DIW---------HTTYYHPMPSAQAIVEWVKGTGLRPFLDPLTESEQAAFL 224 (258)
T ss_pred hccccccCcCCCCHHHHHHHHHhCCCce-eee---------eeeeeeecCCchhhhhhhhhccHHHHHhhCCHHHHHHHH
Confidence 100 000111111111122222222111 110 11222233 456777777654322 223344566677
Q ss_pred HHHHHHHHHHhccCCCccEEEEEeeEEEEeecCC
Q 024647 230 ENVIENFRRAWNEDGQSRKVVRFPIYLRIGKVGN 263 (265)
Q Consensus 230 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ark~~ 263 (265)
+++.+.+.+.+....++.+.++|...+++|+|.+
T Consensus 225 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 258 (258)
T PRK01683 225 AAYLARIAEAYPLQADGKVLLAFPRLFIVARRKE 258 (258)
T ss_pred HHHHHHHHHHCCCCCCCcEEcccceEEEEEEecC
Confidence 7677777777542121258899999999999853
No 7
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.85 E-value=1.4e-20 Score=158.81 Aligned_cols=132 Identities=20% Similarity=0.242 Sum_probs=104.5
Q ss_pred hHHHHHHHHHhhhCCCC---cHHHHHHH-Hh--hCCCCCeEEEEcCCcchhHHHHHhcC---CcEEEEcCCHHHHHHHHc
Q 024647 3 ELFIKQAKQYAETRPNY---PEELFKFI-TS--KTTNHELAWDVGTGSGQAAASLSGIF---ENVIGTETSPKQIEFATK 73 (265)
Q Consensus 3 ~~f~~~a~~Y~~~rp~y---~~~l~~~l-~~--~~~~~~~vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~ 73 (265)
+.|+..|..||.....+ -....+.+ .. ..+++.+|||+|||+|.++..+++.. .+|+|+|+|++|++.|++
T Consensus 37 ~~f~~~A~~YD~~~~~~s~g~~~~~r~~~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~ 116 (261)
T PLN02233 37 ALFNRIAPVYDNLNDLLSLGQHRIWKRMAVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAAS 116 (261)
T ss_pred HHHHHhhhHHHHhhhhhcCChhHHHHHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHH
Confidence 57999999999854321 12222222 22 23467899999999999999998864 379999999999999864
Q ss_pred C---------CCceEEecCCccchhhhhhccCCCCceeEEEeccccccC-ChhHHHHHHHHHhcCCCcEEEEEecCCCC
Q 024647 74 L---------PNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWF-DLPQFYNQVKWVLKKPNGVIATWCYTVPE 142 (265)
Q Consensus 74 ~---------~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~~~~~~ 142 (265)
. .++.+.+ +|++++++++++||+|++++++|++ |+..+++++.|+|| |||.+++.++..+.
T Consensus 117 r~~~~~~~~~~~i~~~~-------~d~~~lp~~~~sfD~V~~~~~l~~~~d~~~~l~ei~rvLk-pGG~l~i~d~~~~~ 187 (261)
T PLN02233 117 RQELKAKSCYKNIEWIE-------GDATDLPFDDCYFDAITMGYGLRNVVDRLKAMQEMYRVLK-PGSRVSILDFNKST 187 (261)
T ss_pred HhhhhhhccCCCeEEEE-------cccccCCCCCCCEeEEEEecccccCCCHHHHHHHHHHHcC-cCcEEEEEECCCCC
Confidence 2 2456666 7788888899999999999999999 89999999999999 99999988776443
No 8
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.84 E-value=1.5e-20 Score=148.16 Aligned_cols=224 Identities=17% Similarity=0.287 Sum_probs=146.5
Q ss_pred hCCCCcHHHHHHHHhhCCCCCeEEEEcCCcchhHHHHHhcCC--cEEEEcCCHHHHHHHHc-CCCceEEecCCccchhhh
Q 024647 15 TRPNYPEELFKFITSKTTNHELAWDVGTGSGQAAASLSGIFE--NVIGTETSPKQIEFATK-LPNIRYELTSPAMSIAEL 91 (265)
Q Consensus 15 ~rp~y~~~l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~-~~~~~~~~~~~~~~~~d~ 91 (265)
.||.+ +++..+- .....+|+|+|||+|..|..|+++++ .|+|+|.|+.|++.|++ .++++|.. +|+
T Consensus 16 tRPa~--dLla~Vp--~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~-------aDl 84 (257)
T COG4106 16 TRPAR--DLLARVP--LERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDATFEE-------ADL 84 (257)
T ss_pred cCcHH--HHHhhCC--ccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCCceec-------ccH
Confidence 55543 5554442 23457799999999999999999986 69999999999998875 68999998 788
Q ss_pred hhccCCCCceeEEEeccccccC-ChhHHHHHHHHHhcCCCcEEEEEecCC--CCCChHHHHhhc-----ccccCC---CC
Q 024647 92 EQNVAAQSTVDLVTIAQAMHWF-DLPQFYNQVKWVLKKPNGVIATWCYTV--PEVNVSVDAVFQ-----PFYTVD---SD 160 (265)
Q Consensus 92 ~~~~~~~~~~Dlv~~~~~~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~~~~--~~~~~~~~~~~~-----~~~~~~---~~ 160 (265)
..+. +..+.|+++++-++||+ |...++..+...|. |||+|++..+.. ......+.+.-. +.+.+. -.
T Consensus 85 ~~w~-p~~~~dllfaNAvlqWlpdH~~ll~rL~~~L~-Pgg~LAVQmPdN~depsH~~mr~~A~~~p~~~~l~~~~~~r~ 162 (257)
T COG4106 85 RTWK-PEQPTDLLFANAVLQWLPDHPELLPRLVSQLA-PGGVLAVQMPDNLDEPSHRLMRETADEAPFAQELGGRGLTRA 162 (257)
T ss_pred hhcC-CCCccchhhhhhhhhhccccHHHHHHHHHhhC-CCceEEEECCCccCchhHHHHHHHHhcCchhhhhCccccccC
Confidence 8884 77799999999999999 99999999999999 999999977642 111222222211 111100 00
Q ss_pred CCcchhhhhhhhccCCCCCCCCCCCCCCCCCCCccceeeecc-CHHHHHHHHHhhh---HHHHHHHhCCccchHHHHHHH
Q 024647 161 PFWEPQRKLVDNKYMTIDFPFEPVDGADSTGPFDRFVIEKTM-DLEGYFSYIRSWS---AYQTAKDKGVELLTENVIENF 236 (265)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~f~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~s---~~~~~~~~~~~~l~~~~~~~l 236 (265)
+...|. .+ .+.+... -..+. -| .-...+.+ ..+.++++++... ....+.+.+++.+.....+.|
T Consensus 163 ~v~s~a-~Y-y~lLa~~---~~rvD------iW-~T~Y~h~l~~a~aIvdWvkgTgLrP~L~~L~e~~~~~FL~~Y~~~l 230 (257)
T COG4106 163 PLPSPA-AY-YELLAPL---ACRVD------IW-HTTYYHQLPGADAIVDWVKGTGLRPYLDRLDEEERQRFLDRYLALL 230 (257)
T ss_pred CCCCHH-HH-HHHhCcc---cceee------ee-eeeccccCCCccchhhheeccccceeccccCHHHHHHHHHHHHHHH
Confidence 000010 00 0111000 00000 11 11222333 4577778887743 334455566677777688888
Q ss_pred HHHhccCCCccEEEEEeeEEEEeecCC
Q 024647 237 RRAWNEDGQSRKVVRFPIYLRIGKVGN 263 (265)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~ark~~ 263 (265)
.+.+....++.+-+.|+-++++|++++
T Consensus 231 ~~aYP~~~dGr~ll~FpRlFiVA~~~~ 257 (257)
T COG4106 231 AEAYPPRADGRVLLAFPRLFIVATRGE 257 (257)
T ss_pred HHhCCCccCCcEEeecceEEEEEecCC
Confidence 888886554467899999999998753
No 9
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.83 E-value=1.6e-19 Score=150.34 Aligned_cols=228 Identities=19% Similarity=0.266 Sum_probs=141.0
Q ss_pred HHHHHHHHHhhhCCCCcHH----HHHHHHhhC-CCCCeEEEEcCCcchhHHHHHhcCC--cEEEEcCCHHHHHHHHcC--
Q 024647 4 LFIKQAKQYAETRPNYPEE----LFKFITSKT-TNHELAWDVGTGSGQAAASLSGIFE--NVIGTETSPKQIEFATKL-- 74 (265)
Q Consensus 4 ~f~~~a~~Y~~~rp~y~~~----l~~~l~~~~-~~~~~vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~-- 74 (265)
.|++++..|+++. .+... +++.+.... ..+.+|||+|||+|.++..+++.++ +++++|+++.+++.++..
T Consensus 1 ~~~~~~~~y~~~~-~~q~~~~~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~ 79 (240)
T TIGR02072 1 SFNKAAKTYDRHA-KIQREMAKRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS 79 (240)
T ss_pred CcchhhhchhHHH-HHHHHHHHHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC
Confidence 3778888888742 22223 333333322 2346899999999999999998875 589999999999988753
Q ss_pred CCceEEecCCccchhhhhhccCCCCceeEEEeccccccC-ChhHHHHHHHHHhcCCCcEEEEEecCCCCCChHHHHhhcc
Q 024647 75 PNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWF-DLPQFYNQVKWVLKKPNGVIATWCYTVPEVNVSVDAVFQP 153 (265)
Q Consensus 75 ~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~~~~~~~~~~~~~~~~~ 153 (265)
+++.+.. +|++..++++++||+|+++.++||+ ++..++.++.++|+ |||.+++..+....+ ..+...+..
T Consensus 80 ~~~~~~~-------~d~~~~~~~~~~fD~vi~~~~l~~~~~~~~~l~~~~~~L~-~~G~l~~~~~~~~~~-~~~~~~~~~ 150 (240)
T TIGR02072 80 ENVQFIC-------GDAEKLPLEDSSFDLIVSNLALQWCDDLSQALSELARVLK-PGGLLAFSTFGPGTL-HELRQSFGQ 150 (240)
T ss_pred CCCeEEe-------cchhhCCCCCCceeEEEEhhhhhhccCHHHHHHHHHHHcC-CCcEEEEEeCCccCH-HHHHHHHHH
Confidence 3566666 6777777778899999999999999 99999999999999 999999877664443 333333321
Q ss_pred cccCCCCCCcchhhhhhhhccCCCCCCCCCCCCCCCCCCCccceee-eccCHHHHHHHHHhhhHHHHHHH-hCCccchHH
Q 024647 154 FYTVDSDPFWEPQRKLVDNKYMTIDFPFEPVDGADSTGPFDRFVIE-KTMDLEGYFSYIRSWSAYQTAKD-KGVELLTEN 231 (265)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~s~~~~~~~-~~~~~l~~~ 231 (265)
...++..+. .+.+.+... |..+... ..... ...+...+..+++..+....... ..++.+. .
T Consensus 151 ----~~~~~~~~~--~~~~~l~~~---f~~~~~~-------~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~-~ 213 (240)
T TIGR02072 151 ----HGLRYLSLD--ELKALLKNS---FELLTLE-------EELITLSFDDPLDVLRHLKKTGANGLSSGRTSRKQLK-A 213 (240)
T ss_pred ----hccCCCCHH--HHHHHHHHh---cCCcEEE-------EEEEEEeCCCHHHHHHHHHHhccCcCCCCCCCHHHHH-H
Confidence 112222211 111222211 2111100 11111 12245666666666443211111 1222222 2
Q ss_pred HHHHHHHHhccCCCccEEEEEeeEEEEeec
Q 024647 232 VIENFRRAWNEDGQSRKVVRFPIYLRIGKV 261 (265)
Q Consensus 232 ~~~~l~~~~~~~~~~~~~~~~~~~~~~ark 261 (265)
+.+.+.+.+..+ +++++|...+.+|+|
T Consensus 214 ~~~~~~~~~~~~---gi~~~~~~~~~~~~k 240 (240)
T TIGR02072 214 FLERYEQEFQPD---GLPLTYHVVYGIAKK 240 (240)
T ss_pred HHHHHHHhhcCC---CceeEEEEEEEEEEC
Confidence 555555555443 389999999999987
No 10
>PRK05785 hypothetical protein; Provisional
Probab=99.83 E-value=1.3e-19 Score=149.62 Aligned_cols=119 Identities=17% Similarity=0.197 Sum_probs=97.4
Q ss_pred hhHHHHHHHHHhhhCCCC--------cHHHHHHHHhhCCCCCeEEEEcCCcchhHHHHHhcC-CcEEEEcCCHHHHHHHH
Q 024647 2 AELFIKQAKQYAETRPNY--------PEELFKFITSKTTNHELAWDVGTGSGQAAASLSGIF-ENVIGTETSPKQIEFAT 72 (265)
Q Consensus 2 ~~~f~~~a~~Y~~~rp~y--------~~~l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~ 72 (265)
.+.|++.|..||...... ..++++.+....+++.+|||+|||||..+..+++.+ .+|+|+|+|++|++.|+
T Consensus 12 ~~~f~~iA~~YD~~n~~~s~g~~~~wr~~~~~~l~~~~~~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~ 91 (226)
T PRK05785 12 QEAYNKIPKAYDRANRFISFNQDVRWRAELVKTILKYCGRPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNL 91 (226)
T ss_pred HHHHHhhhHHHHHhhhhccCCCcHHHHHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHH
Confidence 367999999999854211 233455555544557899999999999999999884 68999999999999998
Q ss_pred cCCCceEEecCCccchhhhhhccCCCCceeEEEeccccccC-ChhHHHHHHHHHhcCCC
Q 024647 73 KLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWF-DLPQFYNQVKWVLKKPN 130 (265)
Q Consensus 73 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~-~~~~~l~~~~~~Lk~pg 130 (265)
.. ..+.+ +|++.+|+++++||+|++++++|++ |++.+++++.|+|| |.
T Consensus 92 ~~--~~~~~-------~d~~~lp~~d~sfD~v~~~~~l~~~~d~~~~l~e~~RvLk-p~ 140 (226)
T PRK05785 92 VA--DDKVV-------GSFEALPFRDKSFDVVMSSFALHASDNIEKVIAEFTRVSR-KQ 140 (226)
T ss_pred hc--cceEE-------echhhCCCCCCCEEEEEecChhhccCCHHHHHHHHHHHhc-Cc
Confidence 53 23444 7788899999999999999999998 99999999999999 84
No 11
>PLN02244 tocopherol O-methyltransferase
Probab=99.82 E-value=1.8e-19 Score=157.49 Aligned_cols=99 Identities=24% Similarity=0.292 Sum_probs=85.5
Q ss_pred CCCCeEEEEcCCcchhHHHHHhc-CCcEEEEcCCHHHHHHHHcC-------CCceEEecCCccchhhhhhccCCCCceeE
Q 024647 32 TNHELAWDVGTGSGQAAASLSGI-FENVIGTETSPKQIEFATKL-------PNIRYELTSPAMSIAELEQNVAAQSTVDL 103 (265)
Q Consensus 32 ~~~~~vlDvGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~d~~~~~~~~~~~Dl 103 (265)
.++.+|||||||+|.++..+++. +.+|+|+|+|+.|++.+++. .++.+.. +|+.++++++++||+
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~-------~D~~~~~~~~~~FD~ 189 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQV-------ADALNQPFEDGQFDL 189 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEE-------cCcccCCCCCCCccE
Confidence 34678999999999999999987 56899999999999987652 3566666 677778888899999
Q ss_pred EEeccccccC-ChhHHHHHHHHHhcCCCcEEEEEec
Q 024647 104 VTIAQAMHWF-DLPQFYNQVKWVLKKPNGVIATWCY 138 (265)
Q Consensus 104 v~~~~~~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~~ 138 (265)
|++..++|++ |...+++++.++|| |||.|++.++
T Consensus 190 V~s~~~~~h~~d~~~~l~e~~rvLk-pGG~lvi~~~ 224 (340)
T PLN02244 190 VWSMESGEHMPDKRKFVQELARVAA-PGGRIIIVTW 224 (340)
T ss_pred EEECCchhccCCHHHHHHHHHHHcC-CCcEEEEEEe
Confidence 9999998887 89999999999999 9999998654
No 12
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.80 E-value=1.8e-19 Score=128.17 Aligned_cols=90 Identities=26% Similarity=0.379 Sum_probs=77.7
Q ss_pred EEEcCCcchhHHHHHhc-CCcEEEEcCCHHHHHHHHcC---CCceEEecCCccchhhhhhccCCCCceeEEEeccccccC
Q 024647 38 WDVGTGSGQAAASLSGI-FENVIGTETSPKQIEFATKL---PNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWF 113 (265)
Q Consensus 38 lDvGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~---~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~ 113 (265)
||+|||+|..+..++++ ..+|+++|+|+.+++.+++. .++.+.. +|++.+++++++||+|++..++||+
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~~~~sfD~v~~~~~~~~~ 73 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNEGVSFRQ-------GDAEDLPFPDNSFDVVFSNSVLHHL 73 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTSTEEEEE-------SBTTSSSS-TT-EEEEEEESHGGGS
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccccCchhee-------ehHHhCccccccccccccccceeec
Confidence 89999999999999999 77999999999999999863 3455666 7788899999999999999999999
Q ss_pred -ChhHHHHHHHHHhcCCCcEEEE
Q 024647 114 -DLPQFYNQVKWVLKKPNGVIAT 135 (265)
Q Consensus 114 -~~~~~l~~~~~~Lk~pgG~l~~ 135 (265)
++..+++++.|+|| |||++++
T Consensus 74 ~~~~~~l~e~~rvLk-~gG~l~~ 95 (95)
T PF08241_consen 74 EDPEAALREIYRVLK-PGGRLVI 95 (95)
T ss_dssp SHHHHHHHHHHHHEE-EEEEEEE
T ss_pred cCHHHHHHHHHHHcC-cCeEEeC
Confidence 88899999999999 9999985
No 13
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.78 E-value=2.4e-18 Score=144.97 Aligned_cols=129 Identities=20% Similarity=0.320 Sum_probs=100.3
Q ss_pred hHHHHHHHHHhhhCCCCc----------HHHHHHHHhhCCCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHH
Q 024647 3 ELFIKQAKQYAETRPNYP----------EELFKFITSKTTNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFAT 72 (265)
Q Consensus 3 ~~f~~~a~~Y~~~rp~y~----------~~l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~ 72 (265)
+.|+..|+.|++..=.-+ ..+.+.+.....++.+|||+|||+|..+..+++.+.+|+++|+|+.|++.|+
T Consensus 4 ~~fd~~a~~f~~~~y~~~~g~~r~~~~~~~~~~~l~~l~~~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~ 83 (255)
T PRK11036 4 RNFDDIAEKFSRNIYGTTKGQIRQAILWQDLDRLLAELPPRPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAK 83 (255)
T ss_pred CChhhHHHHHHHhccCCCccHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHH
Confidence 679999999998332211 1222233322345679999999999999999999999999999999999987
Q ss_pred cC-------CCceEEecCCccchhhhhhcc-CCCCceeEEEeccccccC-ChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647 73 KL-------PNIRYELTSPAMSIAELEQNV-AAQSTVDLVTIAQAMHWF-DLPQFYNQVKWVLKKPNGVIATWCYT 139 (265)
Q Consensus 73 ~~-------~~~~~~~~~~~~~~~d~~~~~-~~~~~~Dlv~~~~~~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~~~ 139 (265)
+. .++.+.+ +|+++++ ..+++||+|++..++||+ ++..+++++.++|| |||.+++..++
T Consensus 84 ~~~~~~g~~~~v~~~~-------~d~~~l~~~~~~~fD~V~~~~vl~~~~~~~~~l~~~~~~Lk-pgG~l~i~~~n 151 (255)
T PRK11036 84 QAAEAKGVSDNMQFIH-------CAAQDIAQHLETPVDLILFHAVLEWVADPKSVLQTLWSVLR-PGGALSLMFYN 151 (255)
T ss_pred HHHHhcCCccceEEEE-------cCHHHHhhhcCCCCCEEEehhHHHhhCCHHHHHHHHHHHcC-CCeEEEEEEEC
Confidence 52 3566666 5555543 456799999999999999 89999999999999 99999876554
No 14
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.77 E-value=2.6e-18 Score=138.79 Aligned_cols=145 Identities=17% Similarity=0.213 Sum_probs=107.1
Q ss_pred hHHHHHHHHHhhhCCCCcHH----HHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhcC--------CcEEEEcCCHHHH
Q 024647 3 ELFIKQAKQYAETRPNYPEE----LFKFITSKT--TNHELAWDVGTGSGQAAASLSGIF--------ENVIGTETSPKQI 68 (265)
Q Consensus 3 ~~f~~~a~~Y~~~rp~y~~~----l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~--------~~v~~vD~s~~~~ 68 (265)
..|++.|..||---....-- =-++....+ .+++++||++||||.++..+.++. .+|+.+|+||.|+
T Consensus 64 ~vF~~vA~~YD~mND~mSlGiHRlWKd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL 143 (296)
T KOG1540|consen 64 HVFESVAKKYDIMNDAMSLGIHRLWKDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHML 143 (296)
T ss_pred HHHHHHHHHHHHHHHHhhcchhHHHHHHhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHH
Confidence 46888888888721110000 011122222 356899999999999999998753 4699999999999
Q ss_pred HHHHcCC---------CceEEecCCccchhhhhhccCCCCceeEEEeccccccC-ChhHHHHHHHHHhcCCCcEEEEEec
Q 024647 69 EFATKLP---------NIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWF-DLPQFYNQVKWVLKKPNGVIATWCY 138 (265)
Q Consensus 69 ~~a~~~~---------~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~~ 138 (265)
+.++++. .+.+++ +|++++|+++++||..++++.+..+ |+++++++++|+|| |||+|.+..+
T Consensus 144 ~vgkqRa~~~~l~~~~~~~w~~-------~dAE~LpFdd~s~D~yTiafGIRN~th~~k~l~EAYRVLK-pGGrf~cLeF 215 (296)
T KOG1540|consen 144 AVGKQRAKKRPLKASSRVEWVE-------GDAEDLPFDDDSFDAYTIAFGIRNVTHIQKALREAYRVLK-PGGRFSCLEF 215 (296)
T ss_pred HHHHHHHhhcCCCcCCceEEEe-------CCcccCCCCCCcceeEEEecceecCCCHHHHHHHHHHhcC-CCcEEEEEEc
Confidence 9987632 245555 8889999999999999999999877 99999999999999 9999998766
Q ss_pred CCCCCChHHHHhhccccc
Q 024647 139 TVPEVNVSVDAVFQPFYT 156 (265)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~ 156 (265)
...+ ++.+..++..+..
T Consensus 216 skv~-~~~l~~fy~~ysf 232 (296)
T KOG1540|consen 216 SKVE-NEPLKWFYDQYSF 232 (296)
T ss_pred cccc-cHHHHHHHHhhhh
Confidence 5322 3566666655544
No 15
>PRK08317 hypothetical protein; Provisional
Probab=99.77 E-value=4e-17 Score=135.74 Aligned_cols=99 Identities=20% Similarity=0.346 Sum_probs=84.7
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcC---CcEEEEcCCHHHHHHHHcC-----CCceEEecCCccchhhhhhccCCCCceeE
Q 024647 32 TNHELAWDVGTGSGQAAASLSGIF---ENVIGTETSPKQIEFATKL-----PNIRYELTSPAMSIAELEQNVAAQSTVDL 103 (265)
Q Consensus 32 ~~~~~vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~~~~~d~~~~~~~~~~~Dl 103 (265)
.++.+|||+|||+|.++..+++++ .+++|+|+|+.+++.+++. .++.+.. +|++..++++++||+
T Consensus 18 ~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~-------~d~~~~~~~~~~~D~ 90 (241)
T PRK08317 18 QPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVR-------GDADGLPFPDGSFDA 90 (241)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEe-------cccccCCCCCCCceE
Confidence 466899999999999999999875 4799999999999988753 4566666 566666677789999
Q ss_pred EEeccccccC-ChhHHHHHHHHHhcCCCcEEEEEec
Q 024647 104 VTIAQAMHWF-DLPQFYNQVKWVLKKPNGVIATWCY 138 (265)
Q Consensus 104 v~~~~~~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~~ 138 (265)
|++..+++++ ++..+++++.++|+ |||.+++..+
T Consensus 91 v~~~~~~~~~~~~~~~l~~~~~~L~-~gG~l~~~~~ 125 (241)
T PRK08317 91 VRSDRVLQHLEDPARALAEIARVLR-PGGRVVVLDT 125 (241)
T ss_pred EEEechhhccCCHHHHHHHHHHHhc-CCcEEEEEec
Confidence 9999999888 99999999999999 9999988654
No 16
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.76 E-value=2.7e-18 Score=134.14 Aligned_cols=117 Identities=21% Similarity=0.313 Sum_probs=93.2
Q ss_pred HhhhCCCCcHHHHHHHHhhCCCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhh
Q 024647 12 YAETRPNYPEELFKFITSKTTNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAEL 91 (265)
Q Consensus 12 Y~~~rp~y~~~l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~ 91 (265)
|++.+.....+++..+....+++.+|||+|||+|.++..+++.+.+++|+|+++.+++. .++.... .+.
T Consensus 1 y~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~~----~~~~~~~-------~~~ 69 (161)
T PF13489_consen 1 YARHRYRAYADLLERLLPRLKPGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIEK----RNVVFDN-------FDA 69 (161)
T ss_dssp ---GCCHCHHHHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHHH----TTSEEEE-------EEC
T ss_pred CchhHHHHHHHHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHhh----hhhhhhh-------hhh
Confidence 56666655667777777656778999999999999999999998899999999999988 2333333 112
Q ss_pred hhccCCCCceeEEEeccccccC-ChhHHHHHHHHHhcCCCcEEEEEecCC
Q 024647 92 EQNVAAQSTVDLVTIAQAMHWF-DLPQFYNQVKWVLKKPNGVIATWCYTV 140 (265)
Q Consensus 92 ~~~~~~~~~~Dlv~~~~~~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~~~~ 140 (265)
.....++++||+|++..++||+ |+..+++++.++|| |||.+++..+..
T Consensus 70 ~~~~~~~~~fD~i~~~~~l~~~~d~~~~l~~l~~~Lk-pgG~l~~~~~~~ 118 (161)
T PF13489_consen 70 QDPPFPDGSFDLIICNDVLEHLPDPEEFLKELSRLLK-PGGYLVISDPNR 118 (161)
T ss_dssp HTHHCHSSSEEEEEEESSGGGSSHHHHHHHHHHHCEE-EEEEEEEEEEBT
T ss_pred hhhhccccchhhHhhHHHHhhcccHHHHHHHHHHhcC-CCCEEEEEEcCC
Confidence 2333567899999999999999 88999999999999 999999977764
No 17
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.76 E-value=1.4e-17 Score=138.24 Aligned_cols=133 Identities=20% Similarity=0.234 Sum_probs=102.6
Q ss_pred hhHHHHHHHHHhhhCCC--C--cHHHHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhcC---CcEEEEcCCHHHHHHHH
Q 024647 2 AELFIKQAKQYAETRPN--Y--PEELFKFITSKT--TNHELAWDVGTGSGQAAASLSGIF---ENVIGTETSPKQIEFAT 72 (265)
Q Consensus 2 ~~~f~~~a~~Y~~~rp~--y--~~~l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~ 72 (265)
.+.|++.|..||..... + .....+.+.... .++.+|||+|||+|..+..+++.. .+|+|+|+|+.|++.++
T Consensus 8 ~~~f~~~a~~yd~~~~~~~~~~~~~~~~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~ 87 (231)
T TIGR02752 8 HKVFEKIYKKYDRMNSVISFQRHKKWRKDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGR 87 (231)
T ss_pred HHHHHHhhhHHhHHHHHhcCCchHHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHH
Confidence 47899999999984331 1 111122233332 456899999999999999999864 37999999999999887
Q ss_pred cC------CCceEEecCCccchhhhhhccCCCCceeEEEeccccccC-ChhHHHHHHHHHhcCCCcEEEEEecCCCC
Q 024647 73 KL------PNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWF-DLPQFYNQVKWVLKKPNGVIATWCYTVPE 142 (265)
Q Consensus 73 ~~------~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~~~~~~ 142 (265)
+. .++.+.. +|++.+++++++||+|++..++|++ ++..+++++.++|+ |||.+++.....+.
T Consensus 88 ~~~~~~~~~~v~~~~-------~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk-~gG~l~~~~~~~~~ 156 (231)
T TIGR02752 88 QKVKDAGLHNVELVH-------GNAMELPFDDNSFDYVTIGFGLRNVPDYMQVLREMYRVVK-PGGKVVCLETSQPT 156 (231)
T ss_pred HHHHhcCCCceEEEE-------echhcCCCCCCCccEEEEecccccCCCHHHHHHHHHHHcC-cCeEEEEEECCCCC
Confidence 42 3556665 6667777778899999999999998 88899999999999 99999987665444
No 18
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.76 E-value=4.7e-18 Score=146.48 Aligned_cols=100 Identities=18% Similarity=0.232 Sum_probs=87.1
Q ss_pred CCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcC-------CCceEEecCCccchhhhhhccCCCCceeEEE
Q 024647 33 NHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKL-------PNIRYELTSPAMSIAELEQNVAAQSTVDLVT 105 (265)
Q Consensus 33 ~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~ 105 (265)
++.+|||||||+|.++..+++.+.+|+|||+++.|++.|+.. .++.+.. +++++++.++++||+|+
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~-------~dae~l~~~~~~FD~Vi 203 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLC-------TTAEKLADEGRKFDAVL 203 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEe-------cCHHHhhhccCCCCEEE
Confidence 446899999999999999999888999999999999998752 2455555 67778777778999999
Q ss_pred eccccccC-ChhHHHHHHHHHhcCCCcEEEEEecCC
Q 024647 106 IAQAMHWF-DLPQFYNQVKWVLKKPNGVIATWCYTV 140 (265)
Q Consensus 106 ~~~~~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~~~~ 140 (265)
+..++|++ |+..+++++.++|| |||.+++.+++.
T Consensus 204 ~~~vLeHv~d~~~~L~~l~r~Lk-PGG~liist~nr 238 (322)
T PLN02396 204 SLEVIEHVANPAEFCKSLSALTI-PNGATVLSTINR 238 (322)
T ss_pred EhhHHHhcCCHHHHHHHHHHHcC-CCcEEEEEECCc
Confidence 99999999 99999999999999 999999977653
No 19
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.75 E-value=5.5e-18 Score=136.83 Aligned_cols=100 Identities=26% Similarity=0.340 Sum_probs=86.8
Q ss_pred CCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcC---CC--ceEEecCCccchhhhhhccCCCCceeEEEec
Q 024647 33 NHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKL---PN--IRYELTSPAMSIAELEQNVAAQSTVDLVTIA 107 (265)
Q Consensus 33 ~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~---~~--~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~ 107 (265)
++.+|||+|||-|.++..+++.+++|+|+|+++.+++.|+.. .. +++.+ ...+++....++||+|+|.
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~-------~~~edl~~~~~~FDvV~cm 131 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAKLHALESGVNIDYRQ-------ATVEDLASAGGQFDVVTCM 131 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhhccccccchh-------hhHHHHHhcCCCccEEEEh
Confidence 678999999999999999999999999999999999999853 22 33544 5556665555899999999
Q ss_pred cccccC-ChhHHHHHHHHHhcCCCcEEEEEecCC
Q 024647 108 QAMHWF-DLPQFYNQVKWVLKKPNGVIATWCYTV 140 (265)
Q Consensus 108 ~~~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~~~~ 140 (265)
.+++++ |+..++..|.+++| |||.+++.+++.
T Consensus 132 EVlEHv~dp~~~~~~c~~lvk-P~G~lf~STinr 164 (243)
T COG2227 132 EVLEHVPDPESFLRACAKLVK-PGGILFLSTINR 164 (243)
T ss_pred hHHHccCCHHHHHHHHHHHcC-CCcEEEEecccc
Confidence 999888 99999999999999 999999988874
No 20
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.70 E-value=7e-17 Score=125.45 Aligned_cols=98 Identities=24% Similarity=0.432 Sum_probs=82.9
Q ss_pred CCCeEEEEcCCcchhHHHHHh-c--CCcEEEEcCCHHHHHHHHc------CCCceEEecCCccchhhhhhcc--CCCCce
Q 024647 33 NHELAWDVGTGSGQAAASLSG-I--FENVIGTETSPKQIEFATK------LPNIRYELTSPAMSIAELEQNV--AAQSTV 101 (265)
Q Consensus 33 ~~~~vlDvGcG~G~~~~~l~~-~--~~~v~~vD~s~~~~~~a~~------~~~~~~~~~~~~~~~~d~~~~~--~~~~~~ 101 (265)
++.+|||+|||+|.++..+++ . ..+++|+|+|+.|++.|++ ..++++.+ +|+.+++ ++ +.|
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~-------~d~~~l~~~~~-~~~ 74 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQ-------GDIEDLPQELE-EKF 74 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEE-------SBTTCGCGCSS-TTE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEE-------eehhccccccC-CCe
Confidence 567899999999999999995 3 3579999999999999886 35788888 5555554 44 789
Q ss_pred eEEEeccccccC-ChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647 102 DLVTIAQAMHWF-DLPQFYNQVKWVLKKPNGVIATWCYT 139 (265)
Q Consensus 102 Dlv~~~~~~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~~~ 139 (265)
|+|++..++|++ ++..+++++.++|+ +||.+++..+.
T Consensus 75 D~I~~~~~l~~~~~~~~~l~~~~~~lk-~~G~~i~~~~~ 112 (152)
T PF13847_consen 75 DIIISNGVLHHFPDPEKVLKNIIRLLK-PGGILIISDPN 112 (152)
T ss_dssp EEEEEESTGGGTSHHHHHHHHHHHHEE-EEEEEEEEEEE
T ss_pred eEEEEcCchhhccCHHHHHHHHHHHcC-CCcEEEEEECC
Confidence 999999999999 78899999999999 99999987765
No 21
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.70 E-value=3.5e-16 Score=132.96 Aligned_cols=108 Identities=19% Similarity=0.333 Sum_probs=84.3
Q ss_pred HHHHHHHhhCC-CCCeEEEEcCCcchhHHHHHhcCC-----cEEEEcCCHHHHHHHHc-CCCceEEecCCccchhhhhhc
Q 024647 22 ELFKFITSKTT-NHELAWDVGTGSGQAAASLSGIFE-----NVIGTETSPKQIEFATK-LPNIRYELTSPAMSIAELEQN 94 (265)
Q Consensus 22 ~l~~~l~~~~~-~~~~vlDvGcG~G~~~~~l~~~~~-----~v~~vD~s~~~~~~a~~-~~~~~~~~~~~~~~~~d~~~~ 94 (265)
.+.+.+....+ ...+|||+|||+|.++..+++..+ .++|+|+|+.|++.|++ .+++.+.. +|+.++
T Consensus 73 ~i~~~l~~~l~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~-------~d~~~l 145 (272)
T PRK11088 73 AVANLLAERLDEKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCV-------ASSHRL 145 (272)
T ss_pred HHHHHHHHhcCCCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEE-------eecccC
Confidence 33344444433 447899999999999999987643 68999999999998875 46777777 667778
Q ss_pred cCCCCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEecCCCCC
Q 024647 95 VAAQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCYTVPEV 143 (265)
Q Consensus 95 ~~~~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~~~~~~ 143 (265)
|+++++||+|++.++ +..++++.|+|+ |||.|++..+....+
T Consensus 146 p~~~~sfD~I~~~~~------~~~~~e~~rvLk-pgG~li~~~p~~~~l 187 (272)
T PRK11088 146 PFADQSLDAIIRIYA------PCKAEELARVVK-PGGIVITVTPGPRHL 187 (272)
T ss_pred CCcCCceeEEEEecC------CCCHHHHHhhcc-CCCEEEEEeCCCcch
Confidence 888899999998654 345789999999 999999988765443
No 22
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.70 E-value=2.4e-16 Score=127.62 Aligned_cols=107 Identities=15% Similarity=0.273 Sum_probs=84.1
Q ss_pred cHHHHHHHHhhCCCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcC------CCceEEecCCccchhhhhh
Q 024647 20 PEELFKFITSKTTNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKL------PNIRYELTSPAMSIAELEQ 93 (265)
Q Consensus 20 ~~~l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~d~~~ 93 (265)
++.+++.+. . .++.+|||+|||+|..+..|++++.+|+|+|+|+.|++.+++. .++.+.. .|+.+
T Consensus 19 ~~~l~~~l~-~-~~~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~-------~d~~~ 89 (197)
T PRK11207 19 HSEVLEAVK-V-VKPGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERIKAAENLDNLHTAV-------VDLNN 89 (197)
T ss_pred hHHHHHhcc-c-CCCCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEe-------cChhh
Confidence 345555543 2 3457899999999999999999999999999999999988752 3455555 56666
Q ss_pred ccCCCCceeEEEeccccccCC---hhHHHHHHHHHhcCCCcEEEEEe
Q 024647 94 NVAAQSTVDLVTIAQAMHWFD---LPQFYNQVKWVLKKPNGVIATWC 137 (265)
Q Consensus 94 ~~~~~~~~Dlv~~~~~~~~~~---~~~~l~~~~~~Lk~pgG~l~~~~ 137 (265)
+++ +++||+|+++.++|+++ ...+++++.++|+ |||.+++..
T Consensus 90 ~~~-~~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~Lk-pgG~~~~~~ 134 (197)
T PRK11207 90 LTF-DGEYDFILSTVVLMFLEAKTIPGLIANMQRCTK-PGGYNLIVA 134 (197)
T ss_pred CCc-CCCcCEEEEecchhhCCHHHHHHHHHHHHHHcC-CCcEEEEEE
Confidence 654 46799999999999884 4589999999999 999966543
No 23
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.70 E-value=1.4e-16 Score=117.02 Aligned_cols=97 Identities=22% Similarity=0.372 Sum_probs=78.0
Q ss_pred CCCeEEEEcCCcchhHHHHHh--cCCcEEEEcCCHHHHHHHHcC-------CCceEEecCCccchhhhhhccCCCCceeE
Q 024647 33 NHELAWDVGTGSGQAAASLSG--IFENVIGTETSPKQIEFATKL-------PNIRYELTSPAMSIAELEQNVAAQSTVDL 103 (265)
Q Consensus 33 ~~~~vlDvGcG~G~~~~~l~~--~~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~d~~~~~~~~~~~Dl 103 (265)
|+.+|||+|||+|.++..+++ .+.+|+|+|+|+.|++.+++. .++.+.. +|+.......+.||+
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~-------~d~~~~~~~~~~~D~ 73 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQ-------GDAEFDPDFLEPFDL 73 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEE-------SCCHGGTTTSSCEEE
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEE-------CccccCcccCCCCCE
Confidence 467899999999999999999 677899999999999988752 5788888 555112223457999
Q ss_pred EEecc-ccccC-C---hhHHHHHHHHHhcCCCcEEEEEe
Q 024647 104 VTIAQ-AMHWF-D---LPQFYNQVKWVLKKPNGVIATWC 137 (265)
Q Consensus 104 v~~~~-~~~~~-~---~~~~l~~~~~~Lk~pgG~l~~~~ 137 (265)
|++.. ++|+. + ..++++++.+.|+ |||++++..
T Consensus 74 v~~~~~~~~~~~~~~~~~~~l~~~~~~L~-pgG~lvi~~ 111 (112)
T PF12847_consen 74 VICSGFTLHFLLPLDERRRVLERIRRLLK-PGGRLVINT 111 (112)
T ss_dssp EEECSGSGGGCCHHHHHHHHHHHHHHHEE-EEEEEEEEE
T ss_pred EEECCCccccccchhHHHHHHHHHHHhcC-CCcEEEEEE
Confidence 99999 66643 3 4679999999999 999999854
No 24
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.70 E-value=1.2e-15 Score=128.93 Aligned_cols=100 Identities=20% Similarity=0.333 Sum_probs=83.5
Q ss_pred CCCCeEEEEcCCcchhHHHHHhc-CCcEEEEcCCHHHHHHHHcC----CCceEEecCCccchhhhhhccCCCCceeEEEe
Q 024647 32 TNHELAWDVGTGSGQAAASLSGI-FENVIGTETSPKQIEFATKL----PNIRYELTSPAMSIAELEQNVAAQSTVDLVTI 106 (265)
Q Consensus 32 ~~~~~vlDvGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~----~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~ 106 (265)
+++.+|||||||+|..+..+++. ..+|+|+|+|+.|++.++++ .++.+.. +|+...++++++||+|++
T Consensus 51 ~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~-------~D~~~~~~~~~~FD~V~s 123 (263)
T PTZ00098 51 NENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDKNKIEFEA-------NDILKKDFPENTFDMIYS 123 (263)
T ss_pred CCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCcCCceEEEE-------CCcccCCCCCCCeEEEEE
Confidence 56789999999999999999875 45899999999999998863 3466665 666677778889999999
Q ss_pred ccccccC---ChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647 107 AQAMHWF---DLPQFYNQVKWVLKKPNGVIATWCYT 139 (265)
Q Consensus 107 ~~~~~~~---~~~~~l~~~~~~Lk~pgG~l~~~~~~ 139 (265)
..+++++ ++..+++++.++|| |||.|++..+.
T Consensus 124 ~~~l~h~~~~d~~~~l~~i~r~Lk-PGG~lvi~d~~ 158 (263)
T PTZ00098 124 RDAILHLSYADKKKLFEKCYKWLK-PNGILLITDYC 158 (263)
T ss_pred hhhHHhCCHHHHHHHHHHHHHHcC-CCcEEEEEEec
Confidence 8876554 67789999999999 99999987664
No 25
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.68 E-value=5.2e-16 Score=130.07 Aligned_cols=123 Identities=15% Similarity=0.282 Sum_probs=93.4
Q ss_pred HHH-HHHHHhh----hCCCCcHHHHHH---HH-hhCCCCCeEEEEcCCcchhHHHHHhc----CCcEEEEcCCHHHHHHH
Q 024647 5 FIK-QAKQYAE----TRPNYPEELFKF---IT-SKTTNHELAWDVGTGSGQAAASLSGI----FENVIGTETSPKQIEFA 71 (265)
Q Consensus 5 f~~-~a~~Y~~----~rp~y~~~l~~~---l~-~~~~~~~~vlDvGcG~G~~~~~l~~~----~~~v~~vD~s~~~~~~a 71 (265)
|+. .|+.|+. ..|.|. .+... +. ...+++.+|||+|||+|..+..+++. ..+++|+|+|+.|++.|
T Consensus 20 f~~~~a~~yd~~~~~~~p~y~-~~~~~~~~~~~~~~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A 98 (247)
T PRK15451 20 FDERVAEVFPDMIQRSVPGYS-NIISMIGMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERC 98 (247)
T ss_pred cChHHHHhhhhHHHhcCCChH-HHHHHHHHHHHHhCCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHH
Confidence 444 4678854 788884 33323 22 22356789999999999999988873 35799999999999998
Q ss_pred HcC-------CCceEEecCCccchhhhhhccCCCCceeEEEeccccccCCh---hHHHHHHHHHhcCCCcEEEEEec
Q 024647 72 TKL-------PNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWFDL---PQFYNQVKWVLKKPNGVIATWCY 138 (265)
Q Consensus 72 ~~~-------~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~~~---~~~l~~~~~~Lk~pgG~l~~~~~ 138 (265)
+++ .++.+.+ +|+..++. +.+|+|+++.++|++++ ..+++++.++|+ |||.|++...
T Consensus 99 ~~~~~~~~~~~~v~~~~-------~d~~~~~~--~~~D~vv~~~~l~~l~~~~~~~~l~~i~~~Lk-pGG~l~l~e~ 165 (247)
T PRK15451 99 RRHIDAYKAPTPVDVIE-------GDIRDIAI--ENASMVVLNFTLQFLEPSERQALLDKIYQGLN-PGGALVLSEK 165 (247)
T ss_pred HHHHHhcCCCCCeEEEe-------CChhhCCC--CCCCEEehhhHHHhCCHHHHHHHHHHHHHhcC-CCCEEEEEEe
Confidence 752 2466666 66666654 35999999999999853 479999999999 9999998664
No 26
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.67 E-value=1.1e-16 Score=130.23 Aligned_cols=100 Identities=25% Similarity=0.334 Sum_probs=81.3
Q ss_pred CCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcC--------CCceEEecCCccchhhhhhccCCCCceeEEE
Q 024647 34 HELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKL--------PNIRYELTSPAMSIAELEQNVAAQSTVDLVT 105 (265)
Q Consensus 34 ~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~--------~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~ 105 (265)
+++|||+|||+|.++..|++.++.|+|||+++.|++.|+.. .++.+.. ++...+++... +.||.|+
T Consensus 90 g~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l---~~~~~~~E~~~---~~fDaVv 163 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRL---EYEDTDVEGLT---GKFDAVV 163 (282)
T ss_pred CceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHhhhcCchhccccceee---ehhhcchhhcc---cccceee
Confidence 47799999999999999999999999999999999999863 1111111 12224555542 3599999
Q ss_pred eccccccC-ChhHHHHHHHHHhcCCCcEEEEEecCC
Q 024647 106 IAQAMHWF-DLPQFYNQVKWVLKKPNGVIATWCYTV 140 (265)
Q Consensus 106 ~~~~~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~~~~ 140 (265)
|..+++++ |++.+++.+.+.|| |||.+++.+.+.
T Consensus 164 csevleHV~dp~~~l~~l~~~lk-P~G~lfittinr 198 (282)
T KOG1270|consen 164 CSEVLEHVKDPQEFLNCLSALLK-PNGRLFITTINR 198 (282)
T ss_pred eHHHHHHHhCHHHHHHHHHHHhC-CCCceEeeehhh
Confidence 99999998 99999999999999 999999987763
No 27
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.67 E-value=2.9e-16 Score=136.08 Aligned_cols=97 Identities=20% Similarity=0.096 Sum_probs=82.2
Q ss_pred CCCeEEEEcCCcchhHHHHHhcCC-cEEEEcCCHHHHHHHHc-------CCCceEEecCCccchhhhhhccCCCCceeEE
Q 024647 33 NHELAWDVGTGSGQAAASLSGIFE-NVIGTETSPKQIEFATK-------LPNIRYELTSPAMSIAELEQNVAAQSTVDLV 104 (265)
Q Consensus 33 ~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~-------~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv 104 (265)
++.+|||||||+|.++..+++.++ .|+|+|+|+.|+.+++. ..++.+.. +++++++. +++||+|
T Consensus 122 ~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~-------~d~e~lp~-~~~FD~V 193 (322)
T PRK15068 122 KGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLP-------LGIEQLPA-LKAFDTV 193 (322)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEe-------CCHHHCCC-cCCcCEE
Confidence 567999999999999999999886 49999999999875432 13566766 67778876 7789999
Q ss_pred EeccccccC-ChhHHHHHHHHHhcCCCcEEEEEec
Q 024647 105 TIAQAMHWF-DLPQFYNQVKWVLKKPNGVIATWCY 138 (265)
Q Consensus 105 ~~~~~~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~~ 138 (265)
+|..++||. |+..++++++++|+ |||.+++.+.
T Consensus 194 ~s~~vl~H~~dp~~~L~~l~~~Lk-pGG~lvl~~~ 227 (322)
T PRK15068 194 FSMGVLYHRRSPLDHLKQLKDQLV-PGGELVLETL 227 (322)
T ss_pred EECChhhccCCHHHHHHHHHHhcC-CCcEEEEEEE
Confidence 999999888 89999999999999 9999988543
No 28
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.67 E-value=6e-16 Score=133.96 Aligned_cols=126 Identities=17% Similarity=0.164 Sum_probs=98.6
Q ss_pred HHHHHHHHhh-hCCC-CcHHHHHHHHhhC---CCCCeEEEEcCCcchhHHHHHhcC--CcEEEEcCCHHHHHHHHcC---
Q 024647 5 FIKQAKQYAE-TRPN-YPEELFKFITSKT---TNHELAWDVGTGSGQAAASLSGIF--ENVIGTETSPKQIEFATKL--- 74 (265)
Q Consensus 5 f~~~a~~Y~~-~rp~-y~~~l~~~l~~~~---~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~--- 74 (265)
|...|..||. ..|. +.+.+.+.+.... .++.+|||||||+|.++..+++.. .+|+++|+|+.|++.+++.
T Consensus 80 y~~lA~~YD~~~~~~~~~e~~r~~~l~~~~l~~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~ 159 (340)
T PLN02490 80 YRFLSIVYDHIINPGHWTEDMRDDALEPADLSDRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL 159 (340)
T ss_pred ccceeeecCCCeecCcchHHHHHHHHhhcccCCCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc
Confidence 3445667776 2333 3455655555433 356799999999999999998764 4799999999999998863
Q ss_pred CCceEEecCCccchhhhhhccCCCCceeEEEeccccccC-ChhHHHHHHHHHhcCCCcEEEEEec
Q 024647 75 PNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWF-DLPQFYNQVKWVLKKPNGVIATWCY 138 (265)
Q Consensus 75 ~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~~ 138 (265)
.++.+.. +|++++++++++||+|+++.++|++ ++..+++++.++|+ |||.+++...
T Consensus 160 ~~i~~i~-------gD~e~lp~~~~sFDvVIs~~~L~~~~d~~~~L~e~~rvLk-PGG~LvIi~~ 216 (340)
T PLN02490 160 KECKIIE-------GDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLK-IGGKACLIGP 216 (340)
T ss_pred cCCeEEe-------ccHHhCCCCCCceeEEEEcChhhhCCCHHHHHHHHHHhcC-CCcEEEEEEe
Confidence 3555555 7888888888899999999999887 88999999999999 9999987554
No 29
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.66 E-value=1.7e-16 Score=136.27 Aligned_cols=98 Identities=17% Similarity=0.066 Sum_probs=80.0
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcCC-cEEEEcCCHHHHHHHHc-------CCCceEEecCCccchhhhhhccCCCCceeE
Q 024647 32 TNHELAWDVGTGSGQAAASLSGIFE-NVIGTETSPKQIEFATK-------LPNIRYELTSPAMSIAELEQNVAAQSTVDL 103 (265)
Q Consensus 32 ~~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~-------~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dl 103 (265)
.++++|||||||+|.++..++..++ .|+|+|+|+.|+.+++. ..++.+.. .++++++. ..+||+
T Consensus 120 ~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~-------~~ie~lp~-~~~FD~ 191 (314)
T TIGR00452 120 LKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEP-------LGIEQLHE-LYAFDT 191 (314)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEE-------CCHHHCCC-CCCcCE
Confidence 3568999999999999999998886 59999999999876431 13445555 55667764 358999
Q ss_pred EEeccccccC-ChhHHHHHHHHHhcCCCcEEEEEec
Q 024647 104 VTIAQAMHWF-DLPQFYNQVKWVLKKPNGVIATWCY 138 (265)
Q Consensus 104 v~~~~~~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~~ 138 (265)
|+|..++||. ++..++++++++|+ |||.|++.+.
T Consensus 192 V~s~gvL~H~~dp~~~L~el~r~Lk-pGG~Lvletl 226 (314)
T TIGR00452 192 VFSMGVLYHRKSPLEHLKQLKHQLV-IKGELVLETL 226 (314)
T ss_pred EEEcchhhccCCHHHHHHHHHHhcC-CCCEEEEEEE
Confidence 9999999888 89999999999999 9999998654
No 30
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.66 E-value=6.1e-16 Score=121.38 Aligned_cols=136 Identities=22% Similarity=0.208 Sum_probs=98.0
Q ss_pred HhhhCCCCcHHHHHHHHhhCCCC--CeEEEEcCCcchhHHHHH-hcCCcEEEEcCCHHHHHHHHc------CCCce-EEe
Q 024647 12 YAETRPNYPEELFKFITSKTTNH--ELAWDVGTGSGQAAASLS-GIFENVIGTETSPKQIEFATK------LPNIR-YEL 81 (265)
Q Consensus 12 Y~~~rp~y~~~l~~~l~~~~~~~--~~vlDvGcG~G~~~~~l~-~~~~~v~~vD~s~~~~~~a~~------~~~~~-~~~ 81 (265)
|++....|-.+++.-+.....+. ..|||||||||..-...- ....+|+++|+++.|-+.+.+ ..++. |+.
T Consensus 53 yne~~~~ykrelFs~i~~~~gk~~K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvv 132 (252)
T KOG4300|consen 53 YNEIADSYKRELFSGIYYFLGKSGKGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVV 132 (252)
T ss_pred HHHHHHHHHHHHHhhhHHHhcccCccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEe
Confidence 33333333445555544333322 347999999997655443 356789999999999988764 24455 555
Q ss_pred cCCccchhhhhhcc-CCCCceeEEEeccccccC-ChhHHHHHHHHHhcCCCcEEEEEecCCCCCChHHHHhhccccc
Q 024647 82 TSPAMSIAELEQNV-AAQSTVDLVTIAQAMHWF-DLPQFYNQVKWVLKKPNGVIATWCYTVPEVNVSVDAVFQPFYT 156 (265)
Q Consensus 82 ~~~~~~~~d~~~~~-~~~~~~Dlv~~~~~~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~~~~~~~~~~~~~~~~~~~~ 156 (265)
++.++++ ++++++|.|++.+++.-. |+.+.|+++.|+|| |||+++++...... ..-+..++++...
T Consensus 133 -------a~ge~l~~l~d~s~DtVV~TlvLCSve~~~k~L~e~~rlLR-pgG~iifiEHva~~-y~~~n~i~q~v~e 200 (252)
T KOG4300|consen 133 -------ADGENLPQLADGSYDTVVCTLVLCSVEDPVKQLNEVRRLLR-PGGRIIFIEHVAGE-YGFWNRILQQVAE 200 (252)
T ss_pred -------echhcCcccccCCeeeEEEEEEEeccCCHHHHHHHHHHhcC-CCcEEEEEeccccc-chHHHHHHHHHhc
Confidence 6778887 789999999999999888 99999999999999 99999998876544 3555666665443
No 31
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.65 E-value=2e-15 Score=126.01 Aligned_cols=124 Identities=17% Similarity=0.245 Sum_probs=93.5
Q ss_pred HH-HHHHHHhhh----CCCCcHHHHHHHHh----hCCCCCeEEEEcCCcchhHHHHHhcC----CcEEEEcCCHHHHHHH
Q 024647 5 FI-KQAKQYAET----RPNYPEELFKFITS----KTTNHELAWDVGTGSGQAAASLSGIF----ENVIGTETSPKQIEFA 71 (265)
Q Consensus 5 f~-~~a~~Y~~~----rp~y~~~l~~~l~~----~~~~~~~vlDvGcG~G~~~~~l~~~~----~~v~~vD~s~~~~~~a 71 (265)
|+ ..|..|+.. .|.| ..++..+.. ..+++.+|||+|||+|..+..+++++ .+++|+|+|+.|++.|
T Consensus 17 ~~~~~a~~y~~~~~~~~p~y-~~~~~~~~~l~~~~~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a 95 (239)
T TIGR00740 17 FDENVAEVFPDMIQRSVPGY-SNIITAIGMLAERFVTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERC 95 (239)
T ss_pred cChHHHHhCcchhhccCCCH-HHHHHHHHHHHHHhCCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHH
Confidence 44 357888874 3666 344444332 22466789999999999999998753 4699999999999988
Q ss_pred HcC-------CCceEEecCCccchhhhhhccCCCCceeEEEeccccccCC---hhHHHHHHHHHhcCCCcEEEEEecC
Q 024647 72 TKL-------PNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWFD---LPQFYNQVKWVLKKPNGVIATWCYT 139 (265)
Q Consensus 72 ~~~-------~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~~---~~~~l~~~~~~Lk~pgG~l~~~~~~ 139 (265)
++. .++++.. +|+..++++ .+|+|+++.++||++ +..+++++.++|+ |||.+++..+.
T Consensus 96 ~~~~~~~~~~~~v~~~~-------~d~~~~~~~--~~d~v~~~~~l~~~~~~~~~~~l~~i~~~Lk-pgG~l~i~d~~ 163 (239)
T TIGR00740 96 RQHIAAYHSEIPVEILC-------NDIRHVEIK--NASMVILNFTLQFLPPEDRIALLTKIYEGLN-PNGVLVLSEKF 163 (239)
T ss_pred HHHHHhcCCCCCeEEEE-------CChhhCCCC--CCCEEeeecchhhCCHHHHHHHHHHHHHhcC-CCeEEEEeecc
Confidence 752 2455665 677777544 589999999999984 3679999999999 99999987653
No 32
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.64 E-value=4.6e-17 Score=117.14 Aligned_cols=90 Identities=23% Similarity=0.368 Sum_probs=57.9
Q ss_pred EEEcCCcchhHHHHHhc--CCcEEEEcCCHHHHHHHHcC------CCceEEecCCccchhhhhhccCCCCceeEEEeccc
Q 024647 38 WDVGTGSGQAAASLSGI--FENVIGTETSPKQIEFATKL------PNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQA 109 (265)
Q Consensus 38 lDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~ 109 (265)
||+|||+|.++..+.+. ..+++|+|+|+.|++.++++ .+........ .+.... ...++||+|++..+
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~----~~~~~~-~~~~~fD~V~~~~v 75 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDV----LDLFDY-DPPESFDLVVASNV 75 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--S----SS---C-CC----SEEEEE-T
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeec----CChhhc-ccccccceehhhhh
Confidence 79999999999999998 45799999999999877652 1222333211 222111 12259999999999
Q ss_pred cccC-ChhHHHHHHHHHhcCCCcEE
Q 024647 110 MHWF-DLPQFYNQVKWVLKKPNGVI 133 (265)
Q Consensus 110 ~~~~-~~~~~l~~~~~~Lk~pgG~l 133 (265)
+||+ ++..+++++.++|+ |||.|
T Consensus 76 l~~l~~~~~~l~~~~~~L~-pgG~l 99 (99)
T PF08242_consen 76 LHHLEDIEAVLRNIYRLLK-PGGIL 99 (99)
T ss_dssp TS--S-HHHHHHHHTTT-T-SS-EE
T ss_pred HhhhhhHHHHHHHHHHHcC-CCCCC
Confidence 9999 88999999999999 99986
No 33
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.64 E-value=3e-15 Score=124.58 Aligned_cols=130 Identities=19% Similarity=0.241 Sum_probs=98.7
Q ss_pred hHHHHHHHHHhhhC----CCCcHHHHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhcC---CcEEEEcCCHHHHHHHHc
Q 024647 3 ELFIKQAKQYAETR----PNYPEELFKFITSKT--TNHELAWDVGTGSGQAAASLSGIF---ENVIGTETSPKQIEFATK 73 (265)
Q Consensus 3 ~~f~~~a~~Y~~~r----p~y~~~l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~ 73 (265)
+.|+..+.+|+... ..+.......+.... .++.+|||+|||+|..+..+++.+ .+++++|+++.+++.+++
T Consensus 15 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~ 94 (239)
T PRK00216 15 EMFDSIAPKYDLMNDLLSFGLHRVWRRKTIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGRE 94 (239)
T ss_pred HHHHHhhhhHHHHHHHHhcCCcHHHHHHHHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHH
Confidence 57888899997522 122233333333322 345789999999999999999877 579999999999998876
Q ss_pred C-------CCceEEecCCccchhhhhhccCCCCceeEEEeccccccC-ChhHHHHHHHHHhcCCCcEEEEEecCC
Q 024647 74 L-------PNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWF-DLPQFYNQVKWVLKKPNGVIATWCYTV 140 (265)
Q Consensus 74 ~-------~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~~~~ 140 (265)
. .++.+.. +|+...+.+.++||+|+++.++|+. ++..+++++.++|+ |||.+++.....
T Consensus 95 ~~~~~~~~~~~~~~~-------~d~~~~~~~~~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~-~gG~li~~~~~~ 161 (239)
T PRK00216 95 KLRDLGLSGNVEFVQ-------GDAEALPFPDNSFDAVTIAFGLRNVPDIDKALREMYRVLK-PGGRLVILEFSK 161 (239)
T ss_pred hhcccccccCeEEEe-------cccccCCCCCCCccEEEEecccccCCCHHHHHHHHHHhcc-CCcEEEEEEecC
Confidence 3 2345554 5666666667789999999999988 88999999999999 999998866543
No 34
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.63 E-value=2.4e-16 Score=113.83 Aligned_cols=87 Identities=28% Similarity=0.544 Sum_probs=70.9
Q ss_pred EEEEcCCcchhHHHHHhcC-----CcEEEEcCCHHHHHHHHcC-----CCceEEecCCccchhhhhhccCCCCceeEEEe
Q 024647 37 AWDVGTGSGQAAASLSGIF-----ENVIGTETSPKQIEFATKL-----PNIRYELTSPAMSIAELEQNVAAQSTVDLVTI 106 (265)
Q Consensus 37 vlDvGcG~G~~~~~l~~~~-----~~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~ 106 (265)
|||+|||+|..++.+.+.+ .+++|+|+|+.|++.+++. .++++.+ +|+.+++..+++||+|++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~-------~D~~~l~~~~~~~D~v~~ 73 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQ-------ADARDLPFSDGKFDLVVC 73 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEE-------SCTTCHHHHSSSEEEEEE
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEE-------CCHhHCcccCCCeeEEEE
Confidence 7999999999999999886 6799999999999998762 4677777 666777777789999999
Q ss_pred cc-ccccCCh---hHHHHHHHHHhcCCCc
Q 024647 107 AQ-AMHWFDL---PQFYNQVKWVLKKPNG 131 (265)
Q Consensus 107 ~~-~~~~~~~---~~~l~~~~~~Lk~pgG 131 (265)
.. .+|++++ ..+++++.++|+ |||
T Consensus 74 ~~~~~~~~~~~~~~~ll~~~~~~l~-pgG 101 (101)
T PF13649_consen 74 SGLSLHHLSPEELEALLRRIARLLR-PGG 101 (101)
T ss_dssp -TTGGGGSSHHHHHHHHHHHHHTEE-EEE
T ss_pred cCCccCCCCHHHHHHHHHHHHHHhC-CCC
Confidence 55 5888853 579999999999 998
No 35
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.63 E-value=2.8e-15 Score=121.19 Aligned_cols=107 Identities=14% Similarity=0.218 Sum_probs=81.2
Q ss_pred cHHHHHHHHhhCCCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcC---CC--ceEEecCCccchhhhhhc
Q 024647 20 PEELFKFITSKTTNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKL---PN--IRYELTSPAMSIAELEQN 94 (265)
Q Consensus 20 ~~~l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~---~~--~~~~~~~~~~~~~d~~~~ 94 (265)
...+.+.+.. .++.+|||+|||+|..+..+++++.+|+|+|+|+.|++.+++. .+ +.+.. .|+...
T Consensus 19 ~~~l~~~~~~--~~~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~-------~d~~~~ 89 (195)
T TIGR00477 19 HSAVREAVKT--VAPCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLDMKARENLPLRTDA-------YDINAA 89 (195)
T ss_pred hHHHHHHhcc--CCCCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHhCCCceeEe-------ccchhc
Confidence 3445544432 3457899999999999999999999999999999999987642 22 33333 455544
Q ss_pred cCCCCceeEEEeccccccCC---hhHHHHHHHHHhcCCCcEEEEEe
Q 024647 95 VAAQSTVDLVTIAQAMHWFD---LPQFYNQVKWVLKKPNGVIATWC 137 (265)
Q Consensus 95 ~~~~~~~Dlv~~~~~~~~~~---~~~~l~~~~~~Lk~pgG~l~~~~ 137 (265)
++ +++||+|+++.++|+++ ...+++++.++|+ |||.+++..
T Consensus 90 ~~-~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~Lk-pgG~lli~~ 133 (195)
T TIGR00477 90 AL-NEDYDFIFSTVVFMFLQAGRVPEIIANMQAHTR-PGGYNLIVA 133 (195)
T ss_pred cc-cCCCCEEEEecccccCCHHHHHHHHHHHHHHhC-CCcEEEEEE
Confidence 44 35799999999999884 3579999999999 999966543
No 36
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.63 E-value=6e-15 Score=121.45 Aligned_cols=131 Identities=24% Similarity=0.267 Sum_probs=101.2
Q ss_pred hhHHHHHHHHHhhhCCCCc----HHHHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhcCC---cEEEEcCCHHHHHHHH
Q 024647 2 AELFIKQAKQYAETRPNYP----EELFKFITSKT--TNHELAWDVGTGSGQAAASLSGIFE---NVIGTETSPKQIEFAT 72 (265)
Q Consensus 2 ~~~f~~~a~~Y~~~rp~y~----~~l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~ 72 (265)
.+.|+..+.+|+.....+. ......+.... .++.+|||+|||+|..+..+++.++ +++++|+++.+++.++
T Consensus 2 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~ 81 (223)
T TIGR01934 2 QEMFDRIAPKYDLLNDLLSFGLHRLWRRRAVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAK 81 (223)
T ss_pred HhHHHHHHhhhhHHHHHHhcccHHHHHHHHHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHH
Confidence 3679999999999754321 12222222222 3568999999999999999998765 7999999999999887
Q ss_pred cC----CCceEEecCCccchhhhhhccCCCCceeEEEeccccccC-ChhHHHHHHHHHhcCCCcEEEEEecCC
Q 024647 73 KL----PNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWF-DLPQFYNQVKWVLKKPNGVIATWCYTV 140 (265)
Q Consensus 73 ~~----~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~~~~ 140 (265)
+. .++.+.. +|+.+.+.+.++||+|+++..+|+. ++..+++++.++|+ |||.+++.....
T Consensus 82 ~~~~~~~~i~~~~-------~d~~~~~~~~~~~D~i~~~~~~~~~~~~~~~l~~~~~~L~-~gG~l~~~~~~~ 146 (223)
T TIGR01934 82 KKSELPLNIEFIQ-------ADAEALPFEDNSFDAVTIAFGLRNVTDIQKALREMYRVLK-PGGRLVILEFSK 146 (223)
T ss_pred HHhccCCCceEEe-------cchhcCCCCCCcEEEEEEeeeeCCcccHHHHHHHHHHHcC-CCcEEEEEEecC
Confidence 53 2455555 6666666667789999999999988 88999999999999 999999876643
No 37
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.62 E-value=2.8e-15 Score=137.18 Aligned_cols=100 Identities=21% Similarity=0.318 Sum_probs=84.7
Q ss_pred CCCCeEEEEcCCcchhHHHHHhc-CCcEEEEcCCHHHHHHHHcC-----CCceEEecCCccchhhhhhccCCCCceeEEE
Q 024647 32 TNHELAWDVGTGSGQAAASLSGI-FENVIGTETSPKQIEFATKL-----PNIRYELTSPAMSIAELEQNVAAQSTVDLVT 105 (265)
Q Consensus 32 ~~~~~vlDvGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~ 105 (265)
.++.+|||||||+|..+..+++. +.+|+|+|+|+.|++.|++. .++.+.. +|+...++++++||+|+
T Consensus 265 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~-------~d~~~~~~~~~~fD~I~ 337 (475)
T PLN02336 265 KPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRKCSVEFEV-------ADCTKKTYPDNSFDVIY 337 (475)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCCCceEEEE-------cCcccCCCCCCCEEEEE
Confidence 45678999999999999999876 45899999999999988752 2455655 66677777778999999
Q ss_pred eccccccC-ChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647 106 IAQAMHWF-DLPQFYNQVKWVLKKPNGVIATWCYT 139 (265)
Q Consensus 106 ~~~~~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~~~ 139 (265)
+..+++|+ ++..+++++.++|+ |||.+++.++.
T Consensus 338 s~~~l~h~~d~~~~l~~~~r~Lk-pgG~l~i~~~~ 371 (475)
T PLN02336 338 SRDTILHIQDKPALFRSFFKWLK-PGGKVLISDYC 371 (475)
T ss_pred ECCcccccCCHHHHHHHHHHHcC-CCeEEEEEEec
Confidence 99999888 99999999999999 99999987654
No 38
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.62 E-value=6.3e-15 Score=119.72 Aligned_cols=98 Identities=20% Similarity=0.245 Sum_probs=76.8
Q ss_pred hCCCCCeEEEEcCCcchhHHHHHhc--CCcEEEEcCCHHHHHHHHc-CCCceEEecCCccchhhhhhccCCCCceeEEEe
Q 024647 30 KTTNHELAWDVGTGSGQAAASLSGI--FENVIGTETSPKQIEFATK-LPNIRYELTSPAMSIAELEQNVAAQSTVDLVTI 106 (265)
Q Consensus 30 ~~~~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~ 106 (265)
..+++.+|||+|||+|..+..+++. +.+++|+|+|+.|++.|++ .+++.+.+ +|+.+ ++++++||+|++
T Consensus 40 ~~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~~~~~~-------~d~~~-~~~~~sfD~V~~ 111 (204)
T TIGR03587 40 RLPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPNINIIQ-------GSLFD-PFKDNFFDLVLT 111 (204)
T ss_pred hcCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCCCcEEE-------eeccC-CCCCCCEEEEEE
Confidence 4466788999999999999999887 4689999999999999986 46666666 55555 667889999999
Q ss_pred ccccccCChh---HHHHHHHHHhcCCCcEEEEEec
Q 024647 107 AQAMHWFDLP---QFYNQVKWVLKKPNGVIATWCY 138 (265)
Q Consensus 107 ~~~~~~~~~~---~~l~~~~~~Lk~pgG~l~~~~~ 138 (265)
+.++|++++. .+++++.++++ +.+++..+
T Consensus 112 ~~vL~hl~p~~~~~~l~el~r~~~---~~v~i~e~ 143 (204)
T TIGR03587 112 KGVLIHINPDNLPTAYRELYRCSN---RYILIAEY 143 (204)
T ss_pred CChhhhCCHHHHHHHHHHHHhhcC---cEEEEEEe
Confidence 9999888644 56667777654 45555554
No 39
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.62 E-value=1.1e-15 Score=124.11 Aligned_cols=109 Identities=20% Similarity=0.258 Sum_probs=84.7
Q ss_pred HHHHHHhhCCCCCeEEEEcCCcchhHHHHHhcCC--cEEEEcCCHHHHHHHHc------CCCceEEecCCccchhhh-hh
Q 024647 23 LFKFITSKTTNHELAWDVGTGSGQAAASLSGIFE--NVIGTETSPKQIEFATK------LPNIRYELTSPAMSIAEL-EQ 93 (265)
Q Consensus 23 l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~------~~~~~~~~~~~~~~~~d~-~~ 93 (265)
..++..-...+..+|||+|||+|..+..+++.++ +|+|+|+|+.|++.+++ ..++.+.+ +|+ +.
T Consensus 30 ~~~~~~~~~~~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~-------~d~~~~ 102 (202)
T PRK00121 30 PLDWAELFGNDAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLC-------GDAVEV 102 (202)
T ss_pred CCCHHHHcCCCCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEe-------cCHHHH
Confidence 3334433334667899999999999999988764 69999999999998874 24666666 565 55
Q ss_pred cc--CCCCceeEEEeccccccCC---------hhHHHHHHHHHhcCCCcEEEEEecC
Q 024647 94 NV--AAQSTVDLVTIAQAMHWFD---------LPQFYNQVKWVLKKPNGVIATWCYT 139 (265)
Q Consensus 94 ~~--~~~~~~Dlv~~~~~~~~~~---------~~~~l~~~~~~Lk~pgG~l~~~~~~ 139 (265)
++ +++++||+|++++..+|.. ...+++++.++|+ |||.|++....
T Consensus 103 l~~~~~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~Lk-pgG~l~i~~~~ 158 (202)
T PRK00121 103 LLDMFPDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLK-PGGEIHFATDW 158 (202)
T ss_pred HHHHcCccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcC-CCCEEEEEcCC
Confidence 54 5678999999988777652 4679999999999 99999986654
No 40
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.62 E-value=4.8e-15 Score=126.03 Aligned_cols=100 Identities=24% Similarity=0.344 Sum_probs=84.2
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcC-C--cEEEEcCCHHHHHHHHcC------CCceEEecCCccchhhhhhccCCCCcee
Q 024647 32 TNHELAWDVGTGSGQAAASLSGIF-E--NVIGTETSPKQIEFATKL------PNIRYELTSPAMSIAELEQNVAAQSTVD 102 (265)
Q Consensus 32 ~~~~~vlDvGcG~G~~~~~l~~~~-~--~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~d~~~~~~~~~~~D 102 (265)
+++.+|||+|||+|..+..+++.. + +|+++|+++.|++.|++. .++.+.. +|++.+++++++||
T Consensus 76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~-------~d~~~l~~~~~~fD 148 (272)
T PRK11873 76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRL-------GEIEALPVADNSVD 148 (272)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEE-------cchhhCCCCCCcee
Confidence 467899999999999888777653 3 599999999999998752 3555555 77788887788999
Q ss_pred EEEeccccccC-ChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647 103 LVTIAQAMHWF-DLPQFYNQVKWVLKKPNGVIATWCYT 139 (265)
Q Consensus 103 lv~~~~~~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~~~ 139 (265)
+|+++.++|+. +...+++++.++|| |||+|++.+..
T Consensus 149 ~Vi~~~v~~~~~d~~~~l~~~~r~Lk-pGG~l~i~~~~ 185 (272)
T PRK11873 149 VIISNCVINLSPDKERVFKEAFRVLK-PGGRFAISDVV 185 (272)
T ss_pred EEEEcCcccCCCCHHHHHHHHHHHcC-CCcEEEEEEee
Confidence 99999999988 88899999999999 99999986553
No 41
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.59 E-value=1.5e-14 Score=115.59 Aligned_cols=97 Identities=23% Similarity=0.201 Sum_probs=78.3
Q ss_pred hCCCCCeEEEEcCCcchhHHHHHhcC--CcEEEEcCCHHHHHHHHc------CCCceEEecCCccchhhhhhccCCCCce
Q 024647 30 KTTNHELAWDVGTGSGQAAASLSGIF--ENVIGTETSPKQIEFATK------LPNIRYELTSPAMSIAELEQNVAAQSTV 101 (265)
Q Consensus 30 ~~~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~------~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 101 (265)
..+++.+|||+|||+|..+..++... .+|+++|+|+.|++.+++ ..++++.. +|+++++. .++|
T Consensus 42 ~l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~-------~d~~~~~~-~~~f 113 (187)
T PRK00107 42 YLPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVH-------GRAEEFGQ-EEKF 113 (187)
T ss_pred hcCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEe-------ccHhhCCC-CCCc
Confidence 34557899999999999999998644 589999999999998875 23566666 66666654 6789
Q ss_pred eEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647 102 DLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCY 138 (265)
Q Consensus 102 Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~ 138 (265)
|+|+++. ..+.+.+++++.++|+ |||.+++...
T Consensus 114 DlV~~~~---~~~~~~~l~~~~~~Lk-pGG~lv~~~~ 146 (187)
T PRK00107 114 DVVTSRA---VASLSDLVELCLPLLK-PGGRFLALKG 146 (187)
T ss_pred cEEEEcc---ccCHHHHHHHHHHhcC-CCeEEEEEeC
Confidence 9999874 2367899999999999 9999998654
No 42
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.59 E-value=4.3e-15 Score=125.42 Aligned_cols=95 Identities=22% Similarity=0.380 Sum_probs=74.8
Q ss_pred CCCeEEEEcCCcch----hHHHHHhcC-------CcEEEEcCCHHHHHHHHcC---------------------------
Q 024647 33 NHELAWDVGTGSGQ----AAASLSGIF-------ENVIGTETSPKQIEFATKL--------------------------- 74 (265)
Q Consensus 33 ~~~~vlDvGcG~G~----~~~~l~~~~-------~~v~~vD~s~~~~~~a~~~--------------------------- 74 (265)
++.+|||+|||||. ++..+++.+ .+|+|+|+|+.|++.|++.
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 45689999999996 444555542 3699999999999999862
Q ss_pred ------CCceEEecCCccchhhhhhccCCCCceeEEEeccccccCChh---HHHHHHHHHhcCCCcEEEE
Q 024647 75 ------PNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWFDLP---QFYNQVKWVLKKPNGVIAT 135 (265)
Q Consensus 75 ------~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~~~~---~~l~~~~~~Lk~pgG~l~~ 135 (265)
.++.|.+ .|+.+.+.+.++||+|+|.+++|+++.+ .+++++.++|+ |||.|++
T Consensus 179 v~~~ir~~V~F~~-------~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~-pGG~L~l 240 (264)
T smart00138 179 VKPELKERVRFAK-------HNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALK-PGGYLFL 240 (264)
T ss_pred EChHHhCcCEEee-------ccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhC-CCeEEEE
Confidence 1344444 6666666567899999999999999533 69999999999 9999987
No 43
>PRK06922 hypothetical protein; Provisional
Probab=99.58 E-value=3.4e-14 Score=130.54 Aligned_cols=98 Identities=19% Similarity=0.177 Sum_probs=80.0
Q ss_pred CCCeEEEEcCCcchhHHHHHhcCC--cEEEEcCCHHHHHHHHcC-----CCceEEecCCccchhhhhhcc--CCCCceeE
Q 024647 33 NHELAWDVGTGSGQAAASLSGIFE--NVIGTETSPKQIEFATKL-----PNIRYELTSPAMSIAELEQNV--AAQSTVDL 103 (265)
Q Consensus 33 ~~~~vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~~~~~d~~~~~--~~~~~~Dl 103 (265)
++.+|||+|||+|..+..+++.++ +|+|+|+|+.|++.|++. .++.+.. +|+.+++ +++++||+
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~-------gDa~dLp~~fedeSFDv 490 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIK-------GDAINLSSSFEKESVDT 490 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEE-------cchHhCccccCCCCEEE
Confidence 568999999999999999988764 799999999999988752 2344454 5666665 57789999
Q ss_pred EEeccccccC--------------ChhHHHHHHHHHhcCCCcEEEEEec
Q 024647 104 VTIAQAMHWF--------------DLPQFYNQVKWVLKKPNGVIATWCY 138 (265)
Q Consensus 104 v~~~~~~~~~--------------~~~~~l~~~~~~Lk~pgG~l~~~~~ 138 (265)
|+++.++||+ +...+++++.++|| |||.+++.+.
T Consensus 491 VVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLK-PGGrLII~D~ 538 (677)
T PRK06922 491 IVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLK-PGGRIIIRDG 538 (677)
T ss_pred EEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcC-CCcEEEEEeC
Confidence 9999999864 24679999999999 9999998654
No 44
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.58 E-value=1.7e-14 Score=117.88 Aligned_cols=118 Identities=16% Similarity=0.050 Sum_probs=84.6
Q ss_pred HHHHHHHHhhC-CCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcCCCce-----------EEecCCccch
Q 024647 21 EELFKFITSKT-TNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKLPNIR-----------YELTSPAMSI 88 (265)
Q Consensus 21 ~~l~~~l~~~~-~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~-----------~~~~~~~~~~ 88 (265)
+.+.+++.... +++.+|||+|||.|..+..|++++.+|+|+|+|+.+++.+....++. .....+++..
T Consensus 21 ~~l~~~~~~l~~~~~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 100 (213)
T TIGR03840 21 PLLVKHWPALGLPAGARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFC 100 (213)
T ss_pred HHHHHHHHhhCCCCCCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEE
Confidence 34445444322 46679999999999999999999999999999999999853211111 1112233334
Q ss_pred hhhhhccCC-CCceeEEEeccccccCCh---hHHHHHHHHHhcCCCcEEEEEecC
Q 024647 89 AELEQNVAA-QSTVDLVTIAQAMHWFDL---PQFYNQVKWVLKKPNGVIATWCYT 139 (265)
Q Consensus 89 ~d~~~~~~~-~~~~Dlv~~~~~~~~~~~---~~~l~~~~~~Lk~pgG~l~~~~~~ 139 (265)
+|+.+++.. .++||.|+...++|.+++ ...++.+.++|+ |||++++.++.
T Consensus 101 ~D~~~~~~~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLk-pgG~~ll~~~~ 154 (213)
T TIGR03840 101 GDFFALTAADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLP-PGARQLLITLD 154 (213)
T ss_pred ccCCCCCcccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcC-CCCeEEEEEEE
Confidence 777665432 357999999888888844 468999999999 99987766554
No 45
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.57 E-value=2.1e-14 Score=117.10 Aligned_cols=100 Identities=14% Similarity=0.111 Sum_probs=77.5
Q ss_pred CCCCCeEEEEcCCcchhHHHHHhcC---CcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhc--------cCCCC
Q 024647 31 TTNHELAWDVGTGSGQAAASLSGIF---ENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQN--------VAAQS 99 (265)
Q Consensus 31 ~~~~~~vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~--------~~~~~ 99 (265)
.+++.+|||+|||||.++..++++. .+|+|||+++ | ...+++.+.++++ ... ++.++
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~----~~~~~v~~i~~D~-------~~~~~~~~i~~~~~~~ 116 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M----DPIVGVDFLQGDF-------RDELVLKALLERVGDS 116 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c----cCCCCcEEEecCC-------CChHHHHHHHHHhCCC
Confidence 4677899999999999999999875 3799999998 2 2346788888544 332 24567
Q ss_pred ceeEEEeccccccC-Ch-----------hHHHHHHHHHhcCCCcEEEEEecCCCCC
Q 024647 100 TVDLVTIAQAMHWF-DL-----------PQFYNQVKWVLKKPNGVIATWCYTVPEV 143 (265)
Q Consensus 100 ~~Dlv~~~~~~~~~-~~-----------~~~l~~~~~~Lk~pgG~l~~~~~~~~~~ 143 (265)
+||+|+++.+.||. ++ ..+++++.++|+ |||.|++..+....+
T Consensus 117 ~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~Lk-pGG~~vi~~~~~~~~ 171 (209)
T PRK11188 117 KVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLA-PGGSFVVKVFQGEGF 171 (209)
T ss_pred CCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcC-CCCEEEEEEecCcCH
Confidence 89999999888876 22 358899999999 999999877664443
No 46
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.57 E-value=9.4e-15 Score=115.12 Aligned_cols=97 Identities=18% Similarity=0.320 Sum_probs=75.8
Q ss_pred CCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHc----CCCceEEecCCccchhhhhhccCCCCceeEEEeccc
Q 024647 34 HELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATK----LPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQA 109 (265)
Q Consensus 34 ~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~----~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~ 109 (265)
-.++||+|||.|.+|..|+.++.+++++|+|+..++.|++ .+++.+.+ .++.+. .|.++||+|+++..
T Consensus 44 y~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~~~~~V~~~~-------~dvp~~-~P~~~FDLIV~SEV 115 (201)
T PF05401_consen 44 YRRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLAGLPHVEWIQ-------ADVPEF-WPEGRFDLIVLSEV 115 (201)
T ss_dssp EEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTTT-SSEEEEE-------S-TTT----SS-EEEEEEES-
T ss_pred cceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcCCCCCeEEEE-------CcCCCC-CCCCCeeEEEEehH
Confidence 3679999999999999999999999999999999999985 37888888 555554 47789999999999
Q ss_pred cccCC-hh---HHHHHHHHHhcCCCcEEEEEecC
Q 024647 110 MHWFD-LP---QFYNQVKWVLKKPNGVIATWCYT 139 (265)
Q Consensus 110 ~~~~~-~~---~~l~~~~~~Lk~pgG~l~~~~~~ 139 (265)
+|+++ .+ .++..+...|+ |||.+++-...
T Consensus 116 lYYL~~~~~L~~~l~~l~~~L~-pgG~LV~g~~r 148 (201)
T PF05401_consen 116 LYYLDDAEDLRAALDRLVAALA-PGGHLVFGHAR 148 (201)
T ss_dssp GGGSSSHHHHHHHHHHHHHTEE-EEEEEEEEEE-
T ss_pred hHcCCCHHHHHHHHHHHHHHhC-CCCEEEEEEec
Confidence 99994 33 57899999999 99999985553
No 47
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.56 E-value=3.3e-14 Score=121.76 Aligned_cols=107 Identities=18% Similarity=0.312 Sum_probs=82.7
Q ss_pred cHHHHHHHHhhCCCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcC-----CCceEEecCCccchhhhhhc
Q 024647 20 PEELFKFITSKTTNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKL-----PNIRYELTSPAMSIAELEQN 94 (265)
Q Consensus 20 ~~~l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~~~~~d~~~~ 94 (265)
.+++...+. . .++.+|||+|||+|..+..+++.+.+|+|+|+|+.|++.+++. .++.+.. .|+...
T Consensus 109 ~~~~~~~~~-~-~~~~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~-------~D~~~~ 179 (287)
T PRK12335 109 HSEVLEAVQ-T-VKPGKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQEIAEKENLNIRTGL-------YDINSA 179 (287)
T ss_pred cHHHHHHhh-c-cCCCCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCceEEEE-------echhcc
Confidence 345555443 2 3446899999999999999999999999999999999987642 1344444 555554
Q ss_pred cCCCCceeEEEeccccccCC---hhHHHHHHHHHhcCCCcEEEEEe
Q 024647 95 VAAQSTVDLVTIAQAMHWFD---LPQFYNQVKWVLKKPNGVIATWC 137 (265)
Q Consensus 95 ~~~~~~~Dlv~~~~~~~~~~---~~~~l~~~~~~Lk~pgG~l~~~~ 137 (265)
.+ +++||+|++..++|+++ ...+++++.++|+ |||.+++..
T Consensus 180 ~~-~~~fD~I~~~~vl~~l~~~~~~~~l~~~~~~Lk-pgG~~l~v~ 223 (287)
T PRK12335 180 SI-QEEYDFILSTVVLMFLNRERIPAIIKNMQEHTN-PGGYNLIVC 223 (287)
T ss_pred cc-cCCccEEEEcchhhhCCHHHHHHHHHHHHHhcC-CCcEEEEEE
Confidence 43 67899999999999885 3579999999999 999976643
No 48
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.56 E-value=3.4e-14 Score=118.76 Aligned_cols=98 Identities=21% Similarity=0.311 Sum_probs=81.2
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcC-CcEEEEcCCHHHHHHHHcC------C-CceEEecCCccchhhhhhccCCCCceeE
Q 024647 32 TNHELAWDVGTGSGQAAASLSGIF-ENVIGTETSPKQIEFATKL------P-NIRYELTSPAMSIAELEQNVAAQSTVDL 103 (265)
Q Consensus 32 ~~~~~vlDvGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~------~-~~~~~~~~~~~~~~d~~~~~~~~~~~Dl 103 (265)
.++++|||||||.|.+++.+++++ .+|+|+++|+++.+.+++. . ++++.. .|..++ .+.||-
T Consensus 71 ~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l-------~d~rd~---~e~fDr 140 (283)
T COG2230 71 KPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRL-------QDYRDF---EEPFDR 140 (283)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEe-------cccccc---ccccce
Confidence 688999999999999999999986 7999999999999988762 2 454544 444444 345999
Q ss_pred EEeccccccC-C--hhHHHHHHHHHhcCCCcEEEEEecCC
Q 024647 104 VTIAQAMHWF-D--LPQFYNQVKWVLKKPNGVIATWCYTV 140 (265)
Q Consensus 104 v~~~~~~~~~-~--~~~~l~~~~~~Lk~pgG~l~~~~~~~ 140 (265)
|++..+++++ . .+.+++.+.++|+ |||.+++-+...
T Consensus 141 IvSvgmfEhvg~~~~~~ff~~~~~~L~-~~G~~llh~I~~ 179 (283)
T COG2230 141 IVSVGMFEHVGKENYDDFFKKVYALLK-PGGRMLLHSITG 179 (283)
T ss_pred eeehhhHHHhCcccHHHHHHHHHhhcC-CCceEEEEEecC
Confidence 9999999999 3 6789999999999 999998765543
No 49
>PRK06202 hypothetical protein; Provisional
Probab=99.55 E-value=2e-14 Score=119.37 Aligned_cols=98 Identities=19% Similarity=0.280 Sum_probs=74.5
Q ss_pred CCCCeEEEEcCCcchhHHHHHhc----C--CcEEEEcCCHHHHHHHHcC---CCceEEecCCccchhhhhhccCCCCcee
Q 024647 32 TNHELAWDVGTGSGQAAASLSGI----F--ENVIGTETSPKQIEFATKL---PNIRYELTSPAMSIAELEQNVAAQSTVD 102 (265)
Q Consensus 32 ~~~~~vlDvGcG~G~~~~~l~~~----~--~~v~~vD~s~~~~~~a~~~---~~~~~~~~~~~~~~~d~~~~~~~~~~~D 102 (265)
.++.+|||+|||+|.++..|++. + .+|+|+|+|+.|++.|++. .++.+.. .+.+.++.++++||
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~-------~~~~~l~~~~~~fD 131 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQ-------AVSDELVAEGERFD 131 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEE-------EecccccccCCCcc
Confidence 45678999999999999998753 3 3799999999999999863 3455555 33444555678999
Q ss_pred EEEeccccccC-Ch--hHHHHHHHHHhcCCCcEEEEEecC
Q 024647 103 LVTIAQAMHWF-DL--PQFYNQVKWVLKKPNGVIATWCYT 139 (265)
Q Consensus 103 lv~~~~~~~~~-~~--~~~l~~~~~~Lk~pgG~l~~~~~~ 139 (265)
+|+++.++||+ +. ..+++++.++++ + .+++....
T Consensus 132 ~V~~~~~lhh~~d~~~~~~l~~~~r~~~--~-~~~i~dl~ 168 (232)
T PRK06202 132 VVTSNHFLHHLDDAEVVRLLADSAALAR--R-LVLHNDLI 168 (232)
T ss_pred EEEECCeeecCChHHHHHHHHHHHHhcC--e-eEEEeccc
Confidence 99999999999 43 469999999987 3 34444444
No 50
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.55 E-value=1.2e-13 Score=110.07 Aligned_cols=111 Identities=19% Similarity=0.227 Sum_probs=81.9
Q ss_pred hCCCCcHHHHHHHH-----h-hCCCCCeEEEEcCCcchhHHHHHhcC--CcEEEEcCCHHHHHHHHc------CCCceEE
Q 024647 15 TRPNYPEELFKFIT-----S-KTTNHELAWDVGTGSGQAAASLSGIF--ENVIGTETSPKQIEFATK------LPNIRYE 80 (265)
Q Consensus 15 ~rp~y~~~l~~~l~-----~-~~~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~------~~~~~~~ 80 (265)
.||.-+++...... . ...++.+|||+|||+|.++..++..+ .+|+++|+|+.|++.+++ ..++.++
T Consensus 18 ~~~~~~~~~~~~~~~d~i~~~~~~~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i 97 (181)
T TIGR00138 18 TSLKTPEEIWERHILDSLKLLEYLDGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIV 97 (181)
T ss_pred cccCCHHHHHHHHHHHHHHHHHhcCCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEE
Confidence 67765555533221 1 11246899999999999999988765 469999999999987764 2456666
Q ss_pred ecCCccchhhhhhccCCCCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEe
Q 024647 81 LTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWC 137 (265)
Q Consensus 81 ~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~ 137 (265)
+ +|++++. ..++||+|++.. + .+...+++.+.++|+ |||.++++.
T Consensus 98 ~-------~d~~~~~-~~~~fD~I~s~~-~--~~~~~~~~~~~~~Lk-pgG~lvi~~ 142 (181)
T TIGR00138 98 N-------GRAEDFQ-HEEQFDVITSRA-L--ASLNVLLELTLNLLK-VGGYFLAYK 142 (181)
T ss_pred e-------cchhhcc-ccCCccEEEehh-h--hCHHHHHHHHHHhcC-CCCEEEEEc
Confidence 6 6666653 457899999875 3 256778999999999 999999874
No 51
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.54 E-value=7.7e-15 Score=117.02 Aligned_cols=131 Identities=21% Similarity=0.301 Sum_probs=101.1
Q ss_pred hhHHHHHHHHHhh---hCCCC--cHHHHHHHHhhCC-CCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcCC
Q 024647 2 AELFIKQAKQYAE---TRPNY--PEELFKFITSKTT-NHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKLP 75 (265)
Q Consensus 2 ~~~f~~~a~~Y~~---~rp~y--~~~l~~~l~~~~~-~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~ 75 (265)
+..|+.-|++++. -.-.| |..+.++|..... +-.++||+|||||..+..|.....+++|+|+|..|++.|.+..
T Consensus 88 e~LFD~~Ae~Fd~~LVdkL~Y~vP~~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~nMl~kA~eKg 167 (287)
T COG4976 88 ETLFDQYAERFDHILVDKLGYSVPELLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDMADRLTGVDISENMLAKAHEKG 167 (287)
T ss_pred HHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHhccCCccceeeecccCcCcccHhHHHHHhhccCCchhHHHHHHHHhcc
Confidence 4678888888776 12222 6677777765543 3578999999999999999999999999999999999998643
Q ss_pred CceEEecCCccchhhhhhc-c-CCCCceeEEEeccccccC-ChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647 76 NIRYELTSPAMSIAELEQN-V-AAQSTVDLVTIAQAMHWF-DLPQFYNQVKWVLKKPNGVIATWCYT 139 (265)
Q Consensus 76 ~~~~~~~~~~~~~~d~~~~-~-~~~~~~Dlv~~~~~~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~~~ 139 (265)
..... .++++..+ + ..++.||+|++..++.++ +.+.++.-+...|+ |||.|+++.-.
T Consensus 168 ~YD~L------~~Aea~~Fl~~~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~-~gGlfaFSvE~ 227 (287)
T COG4976 168 LYDTL------YVAEAVLFLEDLTQERFDLIVAADVLPYLGALEGLFAGAAGLLA-PGGLFAFSVET 227 (287)
T ss_pred chHHH------HHHHHHHHhhhccCCcccchhhhhHHHhhcchhhHHHHHHHhcC-CCceEEEEecc
Confidence 22111 11444422 1 467789999999999999 99999999999999 99999986554
No 52
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.54 E-value=8.2e-14 Score=110.19 Aligned_cols=111 Identities=22% Similarity=0.300 Sum_probs=81.1
Q ss_pred CCCeEEEEcCCcchhHHHHHhcCCc--EEEEcCCHHHHHHHHc------CCCceEEecCCccchhhhhhccCCCCceeEE
Q 024647 33 NHELAWDVGTGSGQAAASLSGIFEN--VIGTETSPKQIEFATK------LPNIRYELTSPAMSIAELEQNVAAQSTVDLV 104 (265)
Q Consensus 33 ~~~~vlDvGcG~G~~~~~l~~~~~~--v~~vD~s~~~~~~a~~------~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv 104 (265)
+..+|||+|||+|.++..+++++++ |+++|+++.+++.+++ ..++.+.. .|+.+. .++++||+|
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~-------~d~~~~-~~~~~fD~I 102 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQ-------SDLFEA-LPDGKFDLI 102 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEE-------SSTTTT-CCTTCEEEE
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCcccccccc-------cccccc-ccccceeEE
Confidence 5678999999999999999999876 9999999999998875 13366666 343332 346899999
Q ss_pred EeccccccCC------hhHHHHHHHHHhcCCCcEEEEEecCCCCCChHHHHhhc
Q 024647 105 TIAQAMHWFD------LPQFYNQVKWVLKKPNGVIATWCYTVPEVNVSVDAVFQ 152 (265)
Q Consensus 105 ~~~~~~~~~~------~~~~l~~~~~~Lk~pgG~l~~~~~~~~~~~~~~~~~~~ 152 (265)
+++-.+|.-. ...+++++.+.|+ |||.+++...........+.+.|.
T Consensus 103 v~NPP~~~~~~~~~~~~~~~i~~a~~~Lk-~~G~l~lv~~~~~~~~~~l~~~f~ 155 (170)
T PF05175_consen 103 VSNPPFHAGGDDGLDLLRDFIEQARRYLK-PGGRLFLVINSHLGYERLLKELFG 155 (170)
T ss_dssp EE---SBTTSHCHHHHHHHHHHHHHHHEE-EEEEEEEEEETTSCHHHHHHHHHS
T ss_pred EEccchhcccccchhhHHHHHHHHHHhcc-CCCEEEEEeecCCChHHHHHHhcC
Confidence 9999888763 3578999999999 999998755443332333444443
No 53
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.53 E-value=5.1e-14 Score=113.76 Aligned_cols=100 Identities=20% Similarity=0.273 Sum_probs=80.2
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcCC--cEEEEcCCHHHHHHHHc------CCCceEEecCCccchhhhhhcc---CCCCc
Q 024647 32 TNHELAWDVGTGSGQAAASLSGIFE--NVIGTETSPKQIEFATK------LPNIRYELTSPAMSIAELEQNV---AAQST 100 (265)
Q Consensus 32 ~~~~~vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~------~~~~~~~~~~~~~~~~d~~~~~---~~~~~ 100 (265)
+...++||||||+|.++..+++.++ +|+|+|+++.|++.|++ ..|+.++. +|+..++ +++++
T Consensus 15 ~~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~-------~d~~~~~~~~~~~~~ 87 (194)
T TIGR00091 15 NKAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLC-------GDANELLDKFFPDGS 87 (194)
T ss_pred CCCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEc-------cCHHHHHHhhCCCCc
Confidence 3456899999999999999998865 69999999999998764 25777777 4444432 45668
Q ss_pred eeEEEeccccccCCh---------hHHHHHHHHHhcCCCcEEEEEecC
Q 024647 101 VDLVTIAQAMHWFDL---------PQFYNQVKWVLKKPNGVIATWCYT 139 (265)
Q Consensus 101 ~Dlv~~~~~~~~~~~---------~~~l~~~~~~Lk~pgG~l~~~~~~ 139 (265)
+|.|++++..+|... ..+++++.++|| |||.|++.+..
T Consensus 88 ~d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~Lk-pgG~l~~~td~ 134 (194)
T TIGR00091 88 LSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLK-KGGVIHFKTDN 134 (194)
T ss_pred eeEEEEECCCcCCCCCccccccCCHHHHHHHHHHhC-CCCEEEEEeCC
Confidence 999999988888632 469999999999 99999886644
No 54
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.52 E-value=1.9e-14 Score=118.81 Aligned_cols=96 Identities=22% Similarity=0.266 Sum_probs=79.0
Q ss_pred CeEEEEcCCcchhHHHHHhcC--CcEEEEcCCHHHHHHHHcC-------CCceEEecCCccchhhhhhccCCCCceeEEE
Q 024647 35 ELAWDVGTGSGQAAASLSGIF--ENVIGTETSPKQIEFATKL-------PNIRYELTSPAMSIAELEQNVAAQSTVDLVT 105 (265)
Q Consensus 35 ~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~ 105 (265)
++|||+|||+|..+..+++.+ .+|+|+|+|+.+++.++++ .++.+.. .|+...+. .++||+|+
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~-------~d~~~~~~-~~~fD~I~ 72 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFY-------RDSAKDPF-PDTYDLVF 72 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEe-------cccccCCC-CCCCCEee
Confidence 369999999999999999876 4799999999999988752 2355655 55544443 35899999
Q ss_pred eccccccC-ChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647 106 IAQAMHWF-DLPQFYNQVKWVLKKPNGVIATWCYT 139 (265)
Q Consensus 106 ~~~~~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~~~ 139 (265)
+..++|++ ++..+++++.++|+ |||.+++..+.
T Consensus 73 ~~~~l~~~~~~~~~l~~~~~~Lk-pgG~l~i~~~~ 106 (224)
T smart00828 73 GFEVIHHIKDKMDLFSNISRHLK-DGGHLVLADFI 106 (224)
T ss_pred hHHHHHhCCCHHHHHHHHHHHcC-CCCEEEEEEcc
Confidence 99999988 88999999999999 99999986653
No 55
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.52 E-value=5.2e-14 Score=128.82 Aligned_cols=97 Identities=16% Similarity=0.214 Sum_probs=81.6
Q ss_pred CCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHc----CCCceEEecCCccchhhhh--hccCCCCceeEEEe
Q 024647 33 NHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATK----LPNIRYELTSPAMSIAELE--QNVAAQSTVDLVTI 106 (265)
Q Consensus 33 ~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~----~~~~~~~~~~~~~~~~d~~--~~~~~~~~~Dlv~~ 106 (265)
+..+|||+|||+|.++..+++.+.+|+|+|+|+.|++.++. .+++.+.+ +|+. .+++++++||+|++
T Consensus 37 ~~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~~~~~~~~i~~~~-------~d~~~~~~~~~~~~fD~I~~ 109 (475)
T PLN02336 37 EGKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNESINGHYKNVKFMC-------ADVTSPDLNISDGSVDLIFS 109 (475)
T ss_pred CCCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHHHhccCCceEEEE-------ecccccccCCCCCCEEEEeh
Confidence 45689999999999999999998999999999999998764 24667777 4443 35567789999999
Q ss_pred ccccccCC---hhHHHHHHHHHhcCCCcEEEEEe
Q 024647 107 AQAMHWFD---LPQFYNQVKWVLKKPNGVIATWC 137 (265)
Q Consensus 107 ~~~~~~~~---~~~~l~~~~~~Lk~pgG~l~~~~ 137 (265)
+.++||+. ...+++++.++|+ |||.+++..
T Consensus 110 ~~~l~~l~~~~~~~~l~~~~r~Lk-~gG~l~~~d 142 (475)
T PLN02336 110 NWLLMYLSDKEVENLAERMVKWLK-VGGYIFFRE 142 (475)
T ss_pred hhhHHhCCHHHHHHHHHHHHHhcC-CCeEEEEEe
Confidence 99999983 3689999999999 999998854
No 56
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.50 E-value=2e-13 Score=115.51 Aligned_cols=105 Identities=20% Similarity=0.312 Sum_probs=75.9
Q ss_pred HHHHHhhC--CCCCeEEEEcCCcchhHHHHHhc-CCcEEEEcCCHHHHHHHHcC-------CCceEEecCCccchhhhhh
Q 024647 24 FKFITSKT--TNHELAWDVGTGSGQAAASLSGI-FENVIGTETSPKQIEFATKL-------PNIRYELTSPAMSIAELEQ 93 (265)
Q Consensus 24 ~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~d~~~ 93 (265)
++.+.... +++++|||||||.|.++..++++ +.+|+|+.+|+.+.+.+++. ..+.+.. .|..+
T Consensus 51 ~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~-------~D~~~ 123 (273)
T PF02353_consen 51 LDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRL-------QDYRD 123 (273)
T ss_dssp HHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEE-------S-GGG
T ss_pred HHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEE-------eeccc
Confidence 33444443 57899999999999999999998 77999999999999988741 2455555 56555
Q ss_pred ccCCCCceeEEEeccccccC---ChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647 94 NVAAQSTVDLVTIAQAMHWF---DLPQFYNQVKWVLKKPNGVIATWCYT 139 (265)
Q Consensus 94 ~~~~~~~~Dlv~~~~~~~~~---~~~~~l~~~~~~Lk~pgG~l~~~~~~ 139 (265)
++ .+||.|++..++.++ +.+.+++++.++|+ |||.+++-...
T Consensus 124 ~~---~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~Lk-pgG~~~lq~i~ 168 (273)
T PF02353_consen 124 LP---GKFDRIVSIEMFEHVGRKNYPAFFRKISRLLK-PGGRLVLQTIT 168 (273)
T ss_dssp ------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSE-TTEEEEEEEEE
T ss_pred cC---CCCCEEEEEechhhcChhHHHHHHHHHHHhcC-CCcEEEEEecc
Confidence 53 289999999999888 34689999999999 99999875443
No 57
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=99.50 E-value=1.5e-13 Score=109.61 Aligned_cols=106 Identities=26% Similarity=0.359 Sum_probs=88.5
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcC-CcEEEEcCCHHHHHHHHcC--CCceEEecCCccchhhhhhccCCCCceeEEEecc
Q 024647 32 TNHELAWDVGTGSGQAAASLSGIF-ENVIGTETSPKQIEFATKL--PNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQ 108 (265)
Q Consensus 32 ~~~~~vlDvGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~--~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~ 108 (265)
+....++|||||-|.+.+.|...+ .+++-+|.|-.|++.++.. +.+..... .+|-+.+++..+++|+|+++.
T Consensus 71 k~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~qdp~i~~~~~-----v~DEE~Ldf~ens~DLiisSl 145 (325)
T KOG2940|consen 71 KSFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQDPSIETSYF-----VGDEEFLDFKENSVDLIISSL 145 (325)
T ss_pred hhCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccCCCceEEEEE-----ecchhcccccccchhhhhhhh
Confidence 445679999999999999998765 5799999999999999864 44333221 167788889999999999999
Q ss_pred ccccC-ChhHHHHHHHHHhcCCCcEEEEEecCCCCC
Q 024647 109 AMHWF-DLPQFYNQVKWVLKKPNGVIATWCYTVPEV 143 (265)
Q Consensus 109 ~~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~~~~~~~ 143 (265)
.+||. |.+..+-+|...|| |+|.|+....+..++
T Consensus 146 slHW~NdLPg~m~~ck~~lK-PDg~FiasmlggdTL 180 (325)
T KOG2940|consen 146 SLHWTNDLPGSMIQCKLALK-PDGLFIASMLGGDTL 180 (325)
T ss_pred hhhhhccCchHHHHHHHhcC-CCccchhHHhccccH
Confidence 99999 99999999999999 999999877765554
No 58
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.49 E-value=1.5e-13 Score=110.97 Aligned_cols=94 Identities=15% Similarity=0.157 Sum_probs=75.1
Q ss_pred HHHhhCCCCCeEEEEcCCcchhHHHHHhcC-CcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhh-c-cCCCCcee
Q 024647 26 FITSKTTNHELAWDVGTGSGQAAASLSGIF-ENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQ-N-VAAQSTVD 102 (265)
Q Consensus 26 ~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~-~~~~~~~D 102 (265)
.+....+++.+|||+|||+|.++..+++.. .+++|+|+|+.|++.++. .++.+.. +|+++ + ++++++||
T Consensus 6 ~i~~~i~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~-~~~~~~~-------~d~~~~l~~~~~~sfD 77 (194)
T TIGR02081 6 SILNLIPPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVA-RGVNVIQ-------GDLDEGLEAFPDKSFD 77 (194)
T ss_pred HHHHhcCCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHH-cCCeEEE-------EEhhhcccccCCCCcC
Confidence 344445667899999999999999997653 578999999999999875 4567766 44443 3 25677999
Q ss_pred EEEeccccccC-ChhHHHHHHHHHhc
Q 024647 103 LVTIAQAMHWF-DLPQFYNQVKWVLK 127 (265)
Q Consensus 103 lv~~~~~~~~~-~~~~~l~~~~~~Lk 127 (265)
+|+++.++||+ |+..+++++.|+++
T Consensus 78 ~Vi~~~~l~~~~d~~~~l~e~~r~~~ 103 (194)
T TIGR02081 78 YVILSQTLQATRNPEEILDEMLRVGR 103 (194)
T ss_pred EEEEhhHhHcCcCHHHHHHHHHHhCC
Confidence 99999999999 88999999888766
No 59
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.49 E-value=4.6e-13 Score=99.86 Aligned_cols=106 Identities=21% Similarity=0.311 Sum_probs=77.7
Q ss_pred HHHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhcCC--cEEEEcCCHHHHHHHHc------CCCceEEecCCccchhhh
Q 024647 22 ELFKFITSKT--TNHELAWDVGTGSGQAAASLSGIFE--NVIGTETSPKQIEFATK------LPNIRYELTSPAMSIAEL 91 (265)
Q Consensus 22 ~l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~------~~~~~~~~~~~~~~~~d~ 91 (265)
++...+.... .++.+|||+|||+|..+..++++.+ +|+++|+|+.+++.+++ ..++.+.. +|+
T Consensus 6 ~~~~~~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~-------~~~ 78 (124)
T TIGR02469 6 EVRALTLSKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVE-------GDA 78 (124)
T ss_pred HHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEe-------ccc
Confidence 3444444443 3457899999999999999998764 79999999999998864 23555555 333
Q ss_pred hh-ccCCCCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEe
Q 024647 92 EQ-NVAAQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWC 137 (265)
Q Consensus 92 ~~-~~~~~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~ 137 (265)
.. .+...++||.|++....+. ...+++++.+.|+ |||.+++..
T Consensus 79 ~~~~~~~~~~~D~v~~~~~~~~--~~~~l~~~~~~Lk-~gG~li~~~ 122 (124)
T TIGR02469 79 PEALEDSLPEPDRVFIGGSGGL--LQEILEAIWRRLR-PGGRIVLNA 122 (124)
T ss_pred cccChhhcCCCCEEEECCcchh--HHHHHHHHHHHcC-CCCEEEEEe
Confidence 32 2222358999999765443 3589999999999 999998754
No 60
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.49 E-value=8.5e-13 Score=109.66 Aligned_cols=129 Identities=20% Similarity=0.273 Sum_probs=94.1
Q ss_pred hHHHHHHHHHhhhCC---CC---cHHHHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcC
Q 024647 3 ELFIKQAKQYAETRP---NY---PEELFKFITSKT--TNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKL 74 (265)
Q Consensus 3 ~~f~~~a~~Y~~~rp---~y---~~~l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~ 74 (265)
+.|+..|+.|...-- .+ .+..++++.... .++.+|||+|||+|.++..+++.+.+++++|+++.+++.+++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~ 89 (233)
T PRK05134 10 AKFSALAARWWDPNGEFKPLHRINPLRLNYIREHAGGLFGKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLH 89 (233)
T ss_pred HHHHHHHHHHhccCCCcHHHHHhhHHHHHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHH
Confidence 457777776653111 11 112234554443 3567899999999999999999888999999999999988742
Q ss_pred -----CCceEEecCCccchhhhhhcc-CCCCceeEEEeccccccC-ChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647 75 -----PNIRYELTSPAMSIAELEQNV-AAQSTVDLVTIAQAMHWF-DLPQFYNQVKWVLKKPNGVIATWCYT 139 (265)
Q Consensus 75 -----~~~~~~~~~~~~~~~d~~~~~-~~~~~~Dlv~~~~~~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~~~ 139 (265)
.++.+.. .++.+.+ ...++||+|++...+++. ++..+++.+.++|+ |||.+++..+.
T Consensus 90 ~~~~~~~~~~~~-------~~~~~~~~~~~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~-~gG~l~v~~~~ 153 (233)
T PRK05134 90 ALESGLKIDYRQ-------TTAEELAAEHPGQFDVVTCMEMLEHVPDPASFVRACAKLVK-PGGLVFFSTLN 153 (233)
T ss_pred HHHcCCceEEEe-------cCHHHhhhhcCCCccEEEEhhHhhccCCHHHHHHHHHHHcC-CCcEEEEEecC
Confidence 2344444 4444443 245789999999999888 88899999999999 99999886654
No 61
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.48 E-value=3.6e-13 Score=119.41 Aligned_cols=97 Identities=18% Similarity=0.241 Sum_probs=78.8
Q ss_pred CCCCeEEEEcCCcchhHHHHHhc-CCcEEEEcCCHHHHHHHHcCC---CceEEecCCccchhhhhhccCCCCceeEEEec
Q 024647 32 TNHELAWDVGTGSGQAAASLSGI-FENVIGTETSPKQIEFATKLP---NIRYELTSPAMSIAELEQNVAAQSTVDLVTIA 107 (265)
Q Consensus 32 ~~~~~vlDvGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~---~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~ 107 (265)
+++.+|||||||+|.++..+++. +.+|+|+|+|+.|++.+++.. ++++.. .|...+ +++||+|++.
T Consensus 166 ~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~l~v~~~~-------~D~~~l---~~~fD~Ivs~ 235 (383)
T PRK11705 166 KPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAGLPVEIRL-------QDYRDL---NGQFDRIVSV 235 (383)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccCeEEEEE-------Cchhhc---CCCCCEEEEe
Confidence 46789999999999999999986 468999999999999998631 234444 455443 4689999999
Q ss_pred cccccCC---hhHHHHHHHHHhcCCCcEEEEEecC
Q 024647 108 QAMHWFD---LPQFYNQVKWVLKKPNGVIATWCYT 139 (265)
Q Consensus 108 ~~~~~~~---~~~~l~~~~~~Lk~pgG~l~~~~~~ 139 (265)
.+++++. ...+++++.++|| |||.+++..+.
T Consensus 236 ~~~ehvg~~~~~~~l~~i~r~Lk-pGG~lvl~~i~ 269 (383)
T PRK11705 236 GMFEHVGPKNYRTYFEVVRRCLK-PDGLFLLHTIG 269 (383)
T ss_pred CchhhCChHHHHHHHHHHHHHcC-CCcEEEEEEcc
Confidence 9999883 3689999999999 99999987664
No 62
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.48 E-value=3.7e-13 Score=111.10 Aligned_cols=98 Identities=26% Similarity=0.352 Sum_probs=81.4
Q ss_pred CCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcC-----C-CceEEecCCccchhhhhhccCC-CCceeEEEe
Q 024647 34 HELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKL-----P-NIRYELTSPAMSIAELEQNVAA-QSTVDLVTI 106 (265)
Q Consensus 34 ~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-----~-~~~~~~~~~~~~~~d~~~~~~~-~~~~Dlv~~ 106 (265)
+.+|||+|||+|.++..+++.+.+++++|+++.+++.+++. . ++.+.. +++.+++.. .++||+|++
T Consensus 46 ~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~-------~d~~~~~~~~~~~~D~i~~ 118 (224)
T TIGR01983 46 GLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAKKDPLLKIEYRC-------TSVEDLAEKGAKSFDVVTC 118 (224)
T ss_pred CCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCCCceEEEe-------CCHHHhhcCCCCCccEEEe
Confidence 67899999999999999998888999999999999988752 1 355555 555555433 378999999
Q ss_pred ccccccC-ChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647 107 AQAMHWF-DLPQFYNQVKWVLKKPNGVIATWCYT 139 (265)
Q Consensus 107 ~~~~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~~~ 139 (265)
...+|+. ++..+++++.++|+ |||.+++....
T Consensus 119 ~~~l~~~~~~~~~l~~~~~~L~-~gG~l~i~~~~ 151 (224)
T TIGR01983 119 MEVLEHVPDPQAFIRACAQLLK-PGGILFFSTIN 151 (224)
T ss_pred hhHHHhCCCHHHHHHHHHHhcC-CCcEEEEEecC
Confidence 9999998 88999999999999 99998876654
No 63
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.48 E-value=2.8e-13 Score=107.86 Aligned_cols=107 Identities=21% Similarity=0.291 Sum_probs=79.8
Q ss_pred HHHHHHHHhhCCCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcC---C--CceEEecCCccchhhhhhcc
Q 024647 21 EELFKFITSKTTNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKL---P--NIRYELTSPAMSIAELEQNV 95 (265)
Q Consensus 21 ~~l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~---~--~~~~~~~~~~~~~~d~~~~~ 95 (265)
+++.+.+ .. .++.++||+|||.|..+..|++++.+|+++|.|+..++.+++. . .++... .|+++..
T Consensus 20 s~v~~a~-~~-~~~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~-------~Dl~~~~ 90 (192)
T PF03848_consen 20 SEVLEAV-PL-LKPGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEGLDIRTRV-------ADLNDFD 90 (192)
T ss_dssp HHHHHHC-TT-S-SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE--------BGCCBS
T ss_pred HHHHHHH-hh-cCCCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcCceeEEEE-------ecchhcc
Confidence 4455443 23 3457899999999999999999999999999999999876642 2 355555 6777776
Q ss_pred CCCCceeEEEeccccccCChh---HHHHHHHHHhcCCCcEEEEEec
Q 024647 96 AAQSTVDLVTIAQAMHWFDLP---QFYNQVKWVLKKPNGVIATWCY 138 (265)
Q Consensus 96 ~~~~~~Dlv~~~~~~~~~~~~---~~l~~~~~~Lk~pgG~l~~~~~ 138 (265)
++ +.||+|++..++++++++ .+++.+...++ |||.+++.+.
T Consensus 91 ~~-~~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~-pGG~~li~~~ 134 (192)
T PF03848_consen 91 FP-EEYDFIVSTVVFMFLQRELRPQIIENMKAATK-PGGYNLIVTF 134 (192)
T ss_dssp -T-TTEEEEEEESSGGGS-GGGHHHHHHHHHHTEE-EEEEEEEEEE
T ss_pred cc-CCcCEEEEEEEeccCCHHHHHHHHHHHHhhcC-CcEEEEEEEe
Confidence 54 689999998888888654 58999999999 9999887544
No 64
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.47 E-value=1.7e-13 Score=108.72 Aligned_cols=125 Identities=23% Similarity=0.281 Sum_probs=90.5
Q ss_pred HHHHHHhhh-CC-CCcHHHHHHHHhh--CC--CCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcC-CCceE
Q 024647 7 KQAKQYAET-RP-NYPEELFKFITSK--TT--NHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKL-PNIRY 79 (265)
Q Consensus 7 ~~a~~Y~~~-rp-~y~~~l~~~l~~~--~~--~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-~~~~~ 79 (265)
..|..|.+. |- .+..++.++.... ++ ++.-|||||||+|..+..|.+.+...+|+|+|+.|++.|.+. -.-.+
T Consensus 18 ~eA~kYt~nsri~~IQ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~~e~egdl 97 (270)
T KOG1541|consen 18 TEAPKYTQNSRIVLIQAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVERELEGDL 97 (270)
T ss_pred hhhhhccccceeeeehHHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHHHhhhhcCe
Confidence 455666662 22 2233343333322 23 467899999999999999999998899999999999998741 11223
Q ss_pred EecCCccchhhh-hhccCCCCceeEEEeccccccC-Ch-----------hHHHHHHHHHhcCCCcEEEEEecC
Q 024647 80 ELTSPAMSIAEL-EQNVAAQSTVDLVTIAQAMHWF-DL-----------PQFYNQVKWVLKKPNGVIATWCYT 139 (265)
Q Consensus 80 ~~~~~~~~~~d~-~~~~~~~~~~Dlv~~~~~~~~~-~~-----------~~~l~~~~~~Lk~pgG~l~~~~~~ 139 (265)
.. .|+ +-+|+.+++||-+|+..+++|+ +. ..|+..++.+|+ +|+..++..+-
T Consensus 98 il-------~DMG~GlpfrpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~-rg~raV~QfYp 162 (270)
T KOG1541|consen 98 IL-------CDMGEGLPFRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLK-RGARAVLQFYP 162 (270)
T ss_pred ee-------eecCCCCCCCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhc-cCceeEEEecc
Confidence 33 333 5578999999999999999998 42 147888999999 89999886663
No 65
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.47 E-value=2.8e-13 Score=111.58 Aligned_cols=93 Identities=15% Similarity=0.228 Sum_probs=74.9
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcC-------CCceEEecCCccchhhhhhccCCCCceeEE
Q 024647 32 TNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKL-------PNIRYELTSPAMSIAELEQNVAAQSTVDLV 104 (265)
Q Consensus 32 ~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv 104 (265)
.++.+|||+|||+|.++..+++...+|+|+|+|+.|++.|++. .++.+.. +|++..+ ++||+|
T Consensus 54 ~~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~-------~d~~~~~---~~fD~i 123 (219)
T TIGR02021 54 LKGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEV-------NDLLSLC---GEFDIV 123 (219)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEE-------CChhhCC---CCcCEE
Confidence 3568899999999999999999888999999999999988752 2566666 5666553 689999
Q ss_pred EeccccccCC---hhHHHHHHHHHhcCCCcEEEE
Q 024647 105 TIAQAMHWFD---LPQFYNQVKWVLKKPNGVIAT 135 (265)
Q Consensus 105 ~~~~~~~~~~---~~~~l~~~~~~Lk~pgG~l~~ 135 (265)
++...++++. ...+++++.++++ +++.+.+
T Consensus 124 i~~~~l~~~~~~~~~~~l~~i~~~~~-~~~~i~~ 156 (219)
T TIGR02021 124 VCMDVLIHYPASDMAKALGHLASLTK-ERVIFTF 156 (219)
T ss_pred EEhhHHHhCCHHHHHHHHHHHHHHhC-CCEEEEE
Confidence 9999887763 4578999999988 7765554
No 66
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.46 E-value=5.5e-13 Score=106.39 Aligned_cols=99 Identities=14% Similarity=0.266 Sum_probs=77.0
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcC-----CCceEEecCCccchhhhhhccCCCCceeEEEe
Q 024647 32 TNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKL-----PNIRYELTSPAMSIAELEQNVAAQSTVDLVTI 106 (265)
Q Consensus 32 ~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~ 106 (265)
.++.+|||+|||+|.++..+++.+.+|+++|+|+.|++.+++. .++.+.. +|+... ..++||+|++
T Consensus 18 ~~~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~-------~d~~~~--~~~~fD~Vi~ 88 (179)
T TIGR00537 18 LKPDDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAKLNNVGLDVVM-------TDLFKG--VRGKFDVILF 88 (179)
T ss_pred cCCCeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCCceEEEE-------cccccc--cCCcccEEEE
Confidence 3457899999999999999999888999999999999988752 2344444 454433 2458999999
Q ss_pred ccccccCC----------------------hhHHHHHHHHHhcCCCcEEEEEecCC
Q 024647 107 AQAMHWFD----------------------LPQFYNQVKWVLKKPNGVIATWCYTV 140 (265)
Q Consensus 107 ~~~~~~~~----------------------~~~~l~~~~~~Lk~pgG~l~~~~~~~ 140 (265)
+..+|..+ ...+++++.++|+ |||.+++.....
T Consensus 89 n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk-~gG~~~~~~~~~ 143 (179)
T TIGR00537 89 NPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILK-EGGRVQLIQSSL 143 (179)
T ss_pred CCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhC-CCCEEEEEEecc
Confidence 98776442 2457999999999 999998866543
No 67
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.46 E-value=8.3e-13 Score=108.26 Aligned_cols=114 Identities=16% Similarity=0.034 Sum_probs=81.6
Q ss_pred HHHHHHHHhh-CCCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcCCCce-----------EEecCCccch
Q 024647 21 EELFKFITSK-TTNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKLPNIR-----------YELTSPAMSI 88 (265)
Q Consensus 21 ~~l~~~l~~~-~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~-----------~~~~~~~~~~ 88 (265)
+-+.+++... .+++.+|||+|||.|..+..|++++.+|+|||+|+..++.+....++. +....+.+..
T Consensus 24 ~~L~~~~~~~~~~~~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~ 103 (218)
T PRK13255 24 PLLQKYWPALALPAGSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYC 103 (218)
T ss_pred HHHHHHHHhhCCCCCCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEE
Confidence 4455554332 245679999999999999999999999999999999999763211111 1112233333
Q ss_pred hhhhhccCC-CCceeEEEeccccccCC---hhHHHHHHHHHhcCCCcEEEE
Q 024647 89 AELEQNVAA-QSTVDLVTIAQAMHWFD---LPQFYNQVKWVLKKPNGVIAT 135 (265)
Q Consensus 89 ~d~~~~~~~-~~~~Dlv~~~~~~~~~~---~~~~l~~~~~~Lk~pgG~l~~ 135 (265)
+|+.++... .+.||+|+...++|.++ ...+++.+.++|+ |||++++
T Consensus 104 ~D~~~l~~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~-pgG~~~l 153 (218)
T PRK13255 104 GDFFALTAADLADVDAVYDRAALIALPEEMRERYVQQLAALLP-AGCRGLL 153 (218)
T ss_pred CcccCCCcccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcC-CCCeEEE
Confidence 666665422 25799999988888885 3479999999999 9997554
No 68
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.45 E-value=6.7e-13 Score=108.13 Aligned_cols=104 Identities=16% Similarity=0.169 Sum_probs=77.4
Q ss_pred HHHHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhcC---CcEEEEcCCHHHHHHHHcC-------CCceEEecCCccch
Q 024647 21 EELFKFITSKT--TNHELAWDVGTGSGQAAASLSGIF---ENVIGTETSPKQIEFATKL-------PNIRYELTSPAMSI 88 (265)
Q Consensus 21 ~~l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~ 88 (265)
+.+..++.... .++.+|||+|||+|..+..+++.. .+|+++|+++.|++.+++. .++.+..
T Consensus 58 p~~~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~------- 130 (205)
T PRK13944 58 PHMVAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYH------- 130 (205)
T ss_pred HHHHHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE-------
Confidence 34455555543 456899999999999999998764 5799999999999988741 1355666
Q ss_pred hhhhhccCCCCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEe
Q 024647 89 AELEQNVAAQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWC 137 (265)
Q Consensus 89 ~d~~~~~~~~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~ 137 (265)
+|+.+.....++||+|++..+++++. +++.+.|+ |||.+++..
T Consensus 131 ~d~~~~~~~~~~fD~Ii~~~~~~~~~-----~~l~~~L~-~gG~lvi~~ 173 (205)
T PRK13944 131 GDGKRGLEKHAPFDAIIVTAAASTIP-----SALVRQLK-DGGVLVIPV 173 (205)
T ss_pred CCcccCCccCCCccEEEEccCcchhh-----HHHHHhcC-cCcEEEEEE
Confidence 55554433457899999998776543 57889999 999998743
No 69
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.45 E-value=3.3e-13 Score=117.68 Aligned_cols=108 Identities=14% Similarity=0.111 Sum_probs=80.8
Q ss_pred CCeEEEEcCCcchhHHHHHhcCC--cEEEEcCCHHHHHHHHcC---CC--ceEEecCCccchhhhhhccCCCCceeEEEe
Q 024647 34 HELAWDVGTGSGQAAASLSGIFE--NVIGTETSPKQIEFATKL---PN--IRYELTSPAMSIAELEQNVAAQSTVDLVTI 106 (265)
Q Consensus 34 ~~~vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~---~~--~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~ 106 (265)
..+|||+|||+|.++..++++++ +|+++|+|+.|++.++.. .+ ..+.. .|.... ..++||+|++
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~-------~D~~~~--~~~~fDlIvs 267 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFA-------SNVFSD--IKGRFDMIIS 267 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEE-------cccccc--cCCCccEEEE
Confidence 45799999999999999999875 799999999999998751 12 22333 343222 3568999999
Q ss_pred ccccccC-C-----hhHHHHHHHHHhcCCCcEEEEEecCCCCCChHHHHhh
Q 024647 107 AQAMHWF-D-----LPQFYNQVKWVLKKPNGVIATWCYTVPEVNVSVDAVF 151 (265)
Q Consensus 107 ~~~~~~~-~-----~~~~l~~~~~~Lk~pgG~l~~~~~~~~~~~~~~~~~~ 151 (265)
+..+|+. + ...++.++.+.|+ |||.+++...........+++.|
T Consensus 268 NPPFH~g~~~~~~~~~~~i~~a~~~Lk-pgG~L~iVan~~l~y~~~l~~~F 317 (342)
T PRK09489 268 NPPFHDGIQTSLDAAQTLIRGAVRHLN-SGGELRIVANAFLPYPDLLDETF 317 (342)
T ss_pred CCCccCCccccHHHHHHHHHHHHHhcC-cCCEEEEEEeCCCChHHHHHHHc
Confidence 9999974 2 3679999999999 99999887665443334444444
No 70
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.45 E-value=1.6e-12 Score=113.84 Aligned_cols=101 Identities=21% Similarity=0.248 Sum_probs=81.6
Q ss_pred CCCeEEEEcCCcchhHHHHHhcCC--cEEEEcCCHHHHHHHHc------CCCceEEecCCccchhhhhhc--cCCCCcee
Q 024647 33 NHELAWDVGTGSGQAAASLSGIFE--NVIGTETSPKQIEFATK------LPNIRYELTSPAMSIAELEQN--VAAQSTVD 102 (265)
Q Consensus 33 ~~~~vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~------~~~~~~~~~~~~~~~~d~~~~--~~~~~~~D 102 (265)
.+..+||||||+|.++..+++..+ .++|+|+++.|++.+.+ ..|+.++++ |+..+ .++++++|
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~-------DA~~ll~~~~~~s~D 194 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINY-------DARLLLELLPSNSVE 194 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEEC-------CHHHhhhhCCCCcee
Confidence 346899999999999999999875 69999999999987754 357888874 44332 35788999
Q ss_pred EEEeccccccC-Ch------hHHHHHHHHHhcCCCcEEEEEecCCC
Q 024647 103 LVTIAQAMHWF-DL------PQFYNQVKWVLKKPNGVIATWCYTVP 141 (265)
Q Consensus 103 lv~~~~~~~~~-~~------~~~l~~~~~~Lk~pgG~l~~~~~~~~ 141 (265)
.|++++...|. .+ ..++.++.|+|+ |||.+.+.+-...
T Consensus 195 ~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLk-pGG~l~l~TD~~~ 239 (390)
T PRK14121 195 KIFVHFPVPWDKKPHRRVISEDFLNEALRVLK-PGGTLELRTDSEL 239 (390)
T ss_pred EEEEeCCCCccccchhhccHHHHHHHHHHHcC-CCcEEEEEEECHH
Confidence 99999888887 33 479999999999 9999998665433
No 71
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.45 E-value=1.9e-13 Score=114.55 Aligned_cols=107 Identities=16% Similarity=0.092 Sum_probs=82.9
Q ss_pred HHHHhhC--CCCCeEEEEcCCcchhHHHHHhcCCc-EEEEcCCHHHHHHHH---cC--CCceEEecCCccchhhhhhccC
Q 024647 25 KFITSKT--TNHELAWDVGTGSGQAAASLSGIFEN-VIGTETSPKQIEFAT---KL--PNIRYELTSPAMSIAELEQNVA 96 (265)
Q Consensus 25 ~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~~-v~~vD~s~~~~~~a~---~~--~~~~~~~~~~~~~~~d~~~~~~ 96 (265)
+++..+. -.+++|||||||.|..+..++.++++ |+|+|+++....+.+ +. ........+ -.+++++.
T Consensus 105 ~rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lp-----lgvE~Lp~ 179 (315)
T PF08003_consen 105 DRLLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELP-----LGVEDLPN 179 (315)
T ss_pred HHHHhhhCCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcC-----cchhhccc
Confidence 3455444 25789999999999999999999985 999999998877643 21 122222221 24577765
Q ss_pred CCCceeEEEeccccccC-ChhHHHHHHHHHhcCCCcEEEEEec
Q 024647 97 AQSTVDLVTIAQAMHWF-DLPQFYNQVKWVLKKPNGVIATWCY 138 (265)
Q Consensus 97 ~~~~~Dlv~~~~~~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~~ 138 (265)
.+.||+|+|..++.+. +|-..+.++.+.|+ |||.+++.+.
T Consensus 180 -~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~-~gGeLvLETl 220 (315)
T PF08003_consen 180 -LGAFDTVFSMGVLYHRRSPLDHLKQLKDSLR-PGGELVLETL 220 (315)
T ss_pred -cCCcCEEEEeeehhccCCHHHHHHHHHHhhC-CCCEEEEEEe
Confidence 6899999999998777 99999999999999 9999998555
No 72
>PRK04266 fibrillarin; Provisional
Probab=99.44 E-value=8e-13 Score=108.82 Aligned_cols=98 Identities=17% Similarity=0.156 Sum_probs=70.3
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcC--CcEEEEcCCHHHHHHH----HcCCCceEEecCCccchhhh-hhccCCCCceeEE
Q 024647 32 TNHELAWDVGTGSGQAAASLSGIF--ENVIGTETSPKQIEFA----TKLPNIRYELTSPAMSIAEL-EQNVAAQSTVDLV 104 (265)
Q Consensus 32 ~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a----~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~~Dlv 104 (265)
.++.+|||+|||+|.++..+++.. .+|+|+|+++.|++.+ ++.+|+.+..+++. +. ...++ .++||+|
T Consensus 71 ~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~----~~~~~~~l-~~~~D~i 145 (226)
T PRK04266 71 KKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADAR----KPERYAHV-VEKVDVI 145 (226)
T ss_pred CCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCC----Ccchhhhc-cccCCEE
Confidence 467899999999999999999876 4799999999988854 33467777774431 10 01122 2569999
Q ss_pred EeccccccCChhHHHHHHHHHhcCCCcEEEEE
Q 024647 105 TIAQAMHWFDLPQFYNQVKWVLKKPNGVIATW 136 (265)
Q Consensus 105 ~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~ 136 (265)
++.....| ....+++++.++|| |||.+++.
T Consensus 146 ~~d~~~p~-~~~~~L~~~~r~LK-pGG~lvI~ 175 (226)
T PRK04266 146 YQDVAQPN-QAEIAIDNAEFFLK-DGGYLLLA 175 (226)
T ss_pred EECCCChh-HHHHHHHHHHHhcC-CCcEEEEE
Confidence 96533211 11346899999999 99999984
No 73
>PTZ00146 fibrillarin; Provisional
Probab=99.44 E-value=1.4e-12 Score=109.90 Aligned_cols=116 Identities=20% Similarity=0.191 Sum_probs=84.7
Q ss_pred HhhhCCCCcHHHHHHHHhhC-----CCCCeEEEEcCCcchhHHHHHhcC---CcEEEEcCCHH----HHHHHHcCCCceE
Q 024647 12 YAETRPNYPEELFKFITSKT-----TNHELAWDVGTGSGQAAASLSGIF---ENVIGTETSPK----QIEFATKLPNIRY 79 (265)
Q Consensus 12 Y~~~rp~y~~~l~~~l~~~~-----~~~~~vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~----~~~~a~~~~~~~~ 79 (265)
|..+.| |-.+|...|.... .+.++|||+|||+|.++..+++.. ..|++||+++. |++.++.++|+.+
T Consensus 107 yR~w~p-~rSKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~ 185 (293)
T PTZ00146 107 YRVWNP-FRSKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVP 185 (293)
T ss_pred eeeeCC-cccHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEE
Confidence 767777 4677877775432 467899999999999999999986 36999999986 4556655678888
Q ss_pred EecCCccchhhhhhccCCCCceeEEEeccccccCCh-hHHHHHHHHHhcCCCcEEEE
Q 024647 80 ELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWFDL-PQFYNQVKWVLKKPNGVIAT 135 (265)
Q Consensus 80 ~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~~~-~~~l~~~~~~Lk~pgG~l~~ 135 (265)
+..+++ +...+....+++|+|++..+. .|. ..++.++.++|| |||.|++
T Consensus 186 I~~Da~----~p~~y~~~~~~vDvV~~Dva~--pdq~~il~~na~r~LK-pGG~~vI 235 (293)
T PTZ00146 186 IIEDAR----YPQKYRMLVPMVDVIFADVAQ--PDQARIVALNAQYFLK-NGGHFII 235 (293)
T ss_pred EECCcc----ChhhhhcccCCCCEEEEeCCC--cchHHHHHHHHHHhcc-CCCEEEE
Confidence 875432 111122234589999998752 333 356678999999 9999998
No 74
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.44 E-value=1.3e-12 Score=114.84 Aligned_cols=107 Identities=13% Similarity=0.117 Sum_probs=78.7
Q ss_pred CCeEEEEcCCcchhHHHHHhcCC--cEEEEcCCHHHHHHHHcC---------CCceEEecCCccchhhhhhccCCCCcee
Q 024647 34 HELAWDVGTGSGQAAASLSGIFE--NVIGTETSPKQIEFATKL---------PNIRYELTSPAMSIAELEQNVAAQSTVD 102 (265)
Q Consensus 34 ~~~vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~---------~~~~~~~~~~~~~~~d~~~~~~~~~~~D 102 (265)
..+|||+|||+|.++..++++++ +|+++|+|+.+++.+++. .++++.. .|.... .+.++||
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~-------~D~l~~-~~~~~fD 300 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMI-------NNALSG-VEPFRFN 300 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEE-------cccccc-CCCCCEE
Confidence 35899999999999999998864 799999999999998752 1234444 443222 2446899
Q ss_pred EEEeccccccCC------hhHHHHHHHHHhcCCCcEEEEEecCCCCCChHHHH
Q 024647 103 LVTIAQAMHWFD------LPQFYNQVKWVLKKPNGVIATWCYTVPEVNVSVDA 149 (265)
Q Consensus 103 lv~~~~~~~~~~------~~~~l~~~~~~Lk~pgG~l~~~~~~~~~~~~~~~~ 149 (265)
+|+|+..+|... ..++++++.++|+ |||.|++...........+.+
T Consensus 301 lIlsNPPfh~~~~~~~~ia~~l~~~a~~~Lk-pGG~L~iV~nr~l~y~~~L~~ 352 (378)
T PRK15001 301 AVLCNPPFHQQHALTDNVAWEMFHHARRCLK-INGELYIVANRHLDYFHKLKK 352 (378)
T ss_pred EEEECcCcccCccCCHHHHHHHHHHHHHhcc-cCCEEEEEEecCcCHHHHHHH
Confidence 999999888652 2468899999999 999999876543332333344
No 75
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.44 E-value=1e-12 Score=107.50 Aligned_cols=104 Identities=19% Similarity=0.188 Sum_probs=78.1
Q ss_pred cHHHHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhcC---CcEEEEcCCHHHHHHHHcC------CCceEEecCCccch
Q 024647 20 PEELFKFITSKT--TNHELAWDVGTGSGQAAASLSGIF---ENVIGTETSPKQIEFATKL------PNIRYELTSPAMSI 88 (265)
Q Consensus 20 ~~~l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~ 88 (265)
.+.+...+.... .++.+|||+|||+|..+..+++.. .+|+++|+++.+++.+++. .++.+..
T Consensus 61 ~p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~------- 133 (212)
T PRK13942 61 AIHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIV------- 133 (212)
T ss_pred cHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEE-------
Confidence 345555555443 467899999999999999998764 4799999999999988752 3566666
Q ss_pred hhhhhccCCCCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEE
Q 024647 89 AELEQNVAAQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATW 136 (265)
Q Consensus 89 ~d~~~~~~~~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~ 136 (265)
+|+.....+.++||+|++..+++.+ .+.+.+.|+ |||.+++.
T Consensus 134 gd~~~~~~~~~~fD~I~~~~~~~~~-----~~~l~~~Lk-pgG~lvi~ 175 (212)
T PRK13942 134 GDGTLGYEENAPYDRIYVTAAGPDI-----PKPLIEQLK-DGGIMVIP 175 (212)
T ss_pred CCcccCCCcCCCcCEEEECCCcccc-----hHHHHHhhC-CCcEEEEE
Confidence 5555444456789999998765543 346778899 99999874
No 76
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.43 E-value=1.3e-12 Score=107.20 Aligned_cols=103 Identities=22% Similarity=0.229 Sum_probs=76.6
Q ss_pred HHHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhcCCc---EEEEcCCHHHHHHHHc------CCCceEEecCCccchhh
Q 024647 22 ELFKFITSKT--TNHELAWDVGTGSGQAAASLSGIFEN---VIGTETSPKQIEFATK------LPNIRYELTSPAMSIAE 90 (265)
Q Consensus 22 ~l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~~---v~~vD~s~~~~~~a~~------~~~~~~~~~~~~~~~~d 90 (265)
.+...+.... .++.+|||+|||+|..+..+++.... |+++|+++.+++.|++ ..++.+.. +|
T Consensus 64 ~~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~-------~d 136 (215)
T TIGR00080 64 HMVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIV-------GD 136 (215)
T ss_pred HHHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEE-------CC
Confidence 3444554443 46789999999999999999988654 9999999999998875 24677776 45
Q ss_pred hhhccCCCCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEe
Q 024647 91 LEQNVAAQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWC 137 (265)
Q Consensus 91 ~~~~~~~~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~ 137 (265)
+.......++||+|++..+.+. ..+.+.+.|+ |||++++..
T Consensus 137 ~~~~~~~~~~fD~Ii~~~~~~~-----~~~~~~~~L~-~gG~lv~~~ 177 (215)
T TIGR00080 137 GTQGWEPLAPYDRIYVTAAGPK-----IPEALIDQLK-EGGILVMPV 177 (215)
T ss_pred cccCCcccCCCCEEEEcCCccc-----ccHHHHHhcC-cCcEEEEEE
Confidence 4443334468999998765443 4456889999 999998743
No 77
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.42 E-value=1.1e-12 Score=103.34 Aligned_cols=104 Identities=14% Similarity=0.127 Sum_probs=81.1
Q ss_pred HHHhhCCCCCeEEEEcCCcchhHHHHHh-cCCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEE
Q 024647 26 FITSKTTNHELAWDVGTGSGQAAASLSG-IFENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLV 104 (265)
Q Consensus 26 ~l~~~~~~~~~vlDvGcG~G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv 104 (265)
.|.+..+++.+|||+|||.|.+...|.+ +..+..|+|++++.+..+.+ .++..++.+++ .++. .+++++||.|
T Consensus 6 ~I~~~I~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~-rGv~Viq~Dld---~gL~--~f~d~sFD~V 79 (193)
T PF07021_consen 6 IIAEWIEPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVA-RGVSVIQGDLD---EGLA--DFPDQSFDYV 79 (193)
T ss_pred HHHHHcCCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHH-cCCCEEECCHH---HhHh--hCCCCCccEE
Confidence 4445557889999999999999999987 45689999999999988876 47788885542 1222 2689999999
Q ss_pred EeccccccC-ChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647 105 TIAQAMHWF-DLPQFYNQVKWVLKKPNGVIATWCYT 139 (265)
Q Consensus 105 ~~~~~~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~~~ 139 (265)
+.++++..+ +|..+++++.|+-| ..++..++
T Consensus 80 IlsqtLQ~~~~P~~vL~EmlRVgr----~~IVsFPN 111 (193)
T PF07021_consen 80 ILSQTLQAVRRPDEVLEEMLRVGR----RAIVSFPN 111 (193)
T ss_pred ehHhHHHhHhHHHHHHHHHHHhcC----eEEEEecC
Confidence 999999988 89999999977644 44554444
No 78
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.41 E-value=6.1e-13 Score=113.87 Aligned_cols=104 Identities=19% Similarity=0.295 Sum_probs=77.2
Q ss_pred HHHHHhhCCCCCeEEEEcCCcchhHHHHHhcCC-cEEEEcCCHHHHHHHHcC---CC----ceEEecCCccchhhhhhcc
Q 024647 24 FKFITSKTTNHELAWDVGTGSGQAAASLSGIFE-NVIGTETSPKQIEFATKL---PN----IRYELTSPAMSIAELEQNV 95 (265)
Q Consensus 24 ~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~---~~----~~~~~~~~~~~~~d~~~~~ 95 (265)
++++.....++.+|||+|||+|.++..+++.++ +|+|+|+|+.+++.+++. .+ +.... ++. ..
T Consensus 150 l~~l~~~~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~-------~~~--~~ 220 (288)
T TIGR00406 150 LEWLEDLDLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKL-------IYL--EQ 220 (288)
T ss_pred HHHHHhhcCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEe-------ccc--cc
Confidence 444555556778999999999999999988765 799999999999998752 11 22222 221 12
Q ss_pred CCCCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647 96 AAQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCYT 139 (265)
Q Consensus 96 ~~~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~~ 139 (265)
...++||+|+++...+. ...++.++.++|+ |||.+++....
T Consensus 221 ~~~~~fDlVvan~~~~~--l~~ll~~~~~~Lk-pgG~li~sgi~ 261 (288)
T TIGR00406 221 PIEGKADVIVANILAEV--IKELYPQFSRLVK-PGGWLILSGIL 261 (288)
T ss_pred ccCCCceEEEEecCHHH--HHHHHHHHHHHcC-CCcEEEEEeCc
Confidence 34568999999865432 3578999999999 99999987764
No 79
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.41 E-value=1.3e-12 Score=96.72 Aligned_cols=96 Identities=20% Similarity=0.267 Sum_probs=75.8
Q ss_pred CeEEEEcCCcchhHHHHHhcC-CcEEEEcCCHHHHHHHHcC-------CCceEEecCCccchhhhhhcc--CCCCceeEE
Q 024647 35 ELAWDVGTGSGQAAASLSGIF-ENVIGTETSPKQIEFATKL-------PNIRYELTSPAMSIAELEQNV--AAQSTVDLV 104 (265)
Q Consensus 35 ~~vlDvGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~d~~~~~--~~~~~~Dlv 104 (265)
.+|||+|||+|.++..+++.+ .+++|+|+++..++.++.. .++++.. +|+.+.. .++++||+|
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~-------~D~~~~~~~~~~~~~D~I 74 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIV-------GDARDLPEPLPDGKFDLI 74 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEE-------SHHHHHHHTCTTT-EEEE
T ss_pred CEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEE-------CchhhchhhccCceeEEE
Confidence 579999999999999999998 7899999999999988751 3466666 6666654 677899999
Q ss_pred EeccccccC--C-------hhHHHHHHHHHhcCCCcEEEEEec
Q 024647 105 TIAQAMHWF--D-------LPQFYNQVKWVLKKPNGVIATWCY 138 (265)
Q Consensus 105 ~~~~~~~~~--~-------~~~~l~~~~~~Lk~pgG~l~~~~~ 138 (265)
+++-.++.. + ...+++++.++|+ |||.++++.+
T Consensus 75 v~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~-~gG~~~~~~~ 116 (117)
T PF13659_consen 75 VTNPPYGPRSGDKAALRRLYSRFLEAAARLLK-PGGVLVFITP 116 (117)
T ss_dssp EE--STTSBTT----GGCHHHHHHHHHHHHEE-EEEEEEEEEE
T ss_pred EECCCCccccccchhhHHHHHHHHHHHHHHcC-CCeEEEEEeC
Confidence 998866532 1 2468999999999 9999998764
No 80
>PRK14967 putative methyltransferase; Provisional
Probab=99.41 E-value=1.8e-12 Score=107.02 Aligned_cols=116 Identities=16% Similarity=0.159 Sum_probs=80.8
Q ss_pred hCCCCcHHHH-HHHHhh-CCCCCeEEEEcCCcchhHHHHHhcCC-cEEEEcCCHHHHHHHHcC-----CCceEEecCCcc
Q 024647 15 TRPNYPEELF-KFITSK-TTNHELAWDVGTGSGQAAASLSGIFE-NVIGTETSPKQIEFATKL-----PNIRYELTSPAM 86 (265)
Q Consensus 15 ~rp~y~~~l~-~~l~~~-~~~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~~ 86 (265)
++|.....++ +.+... ..++.+|||+|||+|.++..+++.+. +++++|+|+.+++.+++. .++.+..
T Consensus 16 ~~p~~ds~~l~~~l~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~----- 90 (223)
T PRK14967 16 YRPQEDTQLLADALAAEGLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGVDVDVRR----- 90 (223)
T ss_pred cCCCCcHHHHHHHHHhcccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEE-----
Confidence 4555443443 333322 34567999999999999999988765 899999999999987652 1344444
Q ss_pred chhhhhhccCCCCceeEEEeccccccC-C---------------------hhHHHHHHHHHhcCCCcEEEEEecC
Q 024647 87 SIAELEQNVAAQSTVDLVTIAQAMHWF-D---------------------LPQFYNQVKWVLKKPNGVIATWCYT 139 (265)
Q Consensus 87 ~~~d~~~~~~~~~~~Dlv~~~~~~~~~-~---------------------~~~~l~~~~~~Lk~pgG~l~~~~~~ 139 (265)
+|+... +++++||+|+++...+.. + ...+++++.++|+ |||.+++....
T Consensus 91 --~d~~~~-~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk-~gG~l~~~~~~ 161 (223)
T PRK14967 91 --GDWARA-VEFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLA-PGGSLLLVQSE 161 (223)
T ss_pred --Cchhhh-ccCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcC-CCcEEEEEEec
Confidence 555443 356789999998643321 1 2457888999999 99999875544
No 81
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.40 E-value=2.1e-12 Score=103.88 Aligned_cols=104 Identities=20% Similarity=0.244 Sum_probs=72.3
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcCC---cEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhc--cCCCCceeEEEe
Q 024647 32 TNHELAWDVGTGSGQAAASLSGIFE---NVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQN--VAAQSTVDLVTI 106 (265)
Q Consensus 32 ~~~~~vlDvGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~Dlv~~ 106 (265)
+++.+|||+|||+|.++..+++... +|+++|+|+.+ ..+++.+.+.+..-. ...+.+ ..++++||+|++
T Consensus 31 ~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----~~~~i~~~~~d~~~~-~~~~~l~~~~~~~~~D~V~~ 104 (188)
T TIGR00438 31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----PIENVDFIRGDFTDE-EVLNKIRERVGDDKVDVVMS 104 (188)
T ss_pred CCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----cCCCceEEEeeCCCh-hHHHHHHHHhCCCCccEEEc
Confidence 5778999999999999999987753 59999999975 235677776433100 000000 135668999998
Q ss_pred ccccc----cC-Ch-------hHHHHHHHHHhcCCCcEEEEEecCCCC
Q 024647 107 AQAMH----WF-DL-------PQFYNQVKWVLKKPNGVIATWCYTVPE 142 (265)
Q Consensus 107 ~~~~~----~~-~~-------~~~l~~~~~~Lk~pgG~l~~~~~~~~~ 142 (265)
+.+.| |. +. ..++.++.++|+ |||.+++..+....
T Consensus 105 ~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~Lk-pgG~lvi~~~~~~~ 151 (188)
T TIGR00438 105 DAAPNISGYWDIDHLRSIDLVELALDIAKEVLK-PKGNFVVKVFQGEE 151 (188)
T ss_pred CCCCCCCCCccccHHHHHHHHHHHHHHHHHHcc-CCCEEEEEEccCcc
Confidence 65432 32 32 578999999999 99999986654333
No 82
>PLN03075 nicotianamine synthase; Provisional
Probab=99.39 E-value=3.9e-12 Score=107.67 Aligned_cols=96 Identities=13% Similarity=0.143 Sum_probs=73.9
Q ss_pred CCCeEEEEcCCcchhHHHHH--hcCC--cEEEEcCCHHHHHHHHcC--------CCceEEecCCccchhhhhhccCCCCc
Q 024647 33 NHELAWDVGTGSGQAAASLS--GIFE--NVIGTETSPKQIEFATKL--------PNIRYELTSPAMSIAELEQNVAAQST 100 (265)
Q Consensus 33 ~~~~vlDvGcG~G~~~~~l~--~~~~--~v~~vD~s~~~~~~a~~~--------~~~~~~~~~~~~~~~d~~~~~~~~~~ 100 (265)
++.+|+|||||+|.++..+. .+++ +++++|+++.+++.|++. .++.|.. +|+.+.....+.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~-------~Da~~~~~~l~~ 195 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHT-------ADVMDVTESLKE 195 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEE-------CchhhcccccCC
Confidence 66889999999885554433 4454 599999999999988862 3477777 444444323468
Q ss_pred eeEEEeccccccC---ChhHHHHHHHHHhcCCCcEEEEEe
Q 024647 101 VDLVTIAQAMHWF---DLPQFYNQVKWVLKKPNGVIATWC 137 (265)
Q Consensus 101 ~Dlv~~~~~~~~~---~~~~~l~~~~~~Lk~pgG~l~~~~ 137 (265)
||+|++. ++|.+ ++.++++++.+.|+ |||.+++-.
T Consensus 196 FDlVF~~-ALi~~dk~~k~~vL~~l~~~Lk-PGG~Lvlr~ 233 (296)
T PLN03075 196 YDVVFLA-ALVGMDKEEKVKVIEHLGKHMA-PGALLMLRS 233 (296)
T ss_pred cCEEEEe-cccccccccHHHHHHHHHHhcC-CCcEEEEec
Confidence 9999999 76665 67789999999999 999999854
No 83
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.39 E-value=3.9e-12 Score=109.60 Aligned_cols=100 Identities=14% Similarity=0.141 Sum_probs=72.9
Q ss_pred hhCCCCCeEEEEcCCcchhHHHHHhcC---CcEEEEcCCHHHHHHHHcC-----CCc--eEEecCCccchhhhhh-ccCC
Q 024647 29 SKTTNHELAWDVGTGSGQAAASLSGIF---ENVIGTETSPKQIEFATKL-----PNI--RYELTSPAMSIAELEQ-NVAA 97 (265)
Q Consensus 29 ~~~~~~~~vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~-----~~~--~~~~~~~~~~~~d~~~-~~~~ 97 (265)
...+++.+|||+|||+|..+..|++.+ .+|+++|+|+.|++.+++. +++ .+++ +|+.+ ++++
T Consensus 59 ~~~~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~-------gD~~~~~~~~ 131 (301)
T TIGR03438 59 AATGAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGIC-------ADFTQPLALP 131 (301)
T ss_pred HhhCCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEE-------Ecccchhhhh
Confidence 334566789999999999999999885 5799999999999887642 343 3345 55443 2222
Q ss_pred CC----ceeEEEeccccccCChh---HHHHHHHHHhcCCCcEEEEE
Q 024647 98 QS----TVDLVTIAQAMHWFDLP---QFYNQVKWVLKKPNGVIATW 136 (265)
Q Consensus 98 ~~----~~Dlv~~~~~~~~~~~~---~~l~~~~~~Lk~pgG~l~~~ 136 (265)
.. ...++++..+++++++. .+++++.++|+ |||.+++-
T Consensus 132 ~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~-pgG~~lig 176 (301)
T TIGR03438 132 PEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLG-PGGGLLIG 176 (301)
T ss_pred cccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcC-CCCEEEEe
Confidence 21 34455566688888543 58999999999 99999873
No 84
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.38 E-value=5e-12 Score=103.58 Aligned_cols=106 Identities=18% Similarity=0.123 Sum_probs=78.6
Q ss_pred cHHHHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcC------CCceEEecCCccchhhh
Q 024647 20 PEELFKFITSKT--TNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKL------PNIRYELTSPAMSIAEL 91 (265)
Q Consensus 20 ~~~l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~d~ 91 (265)
.+.+..++.... .++.+|||+|||+|..+..+++...+++++|+++.+++.+++. .++.+.. +|.
T Consensus 63 ~p~~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~-------~d~ 135 (212)
T PRK00312 63 QPYMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQLGLHNVSVRH-------GDG 135 (212)
T ss_pred cHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHHCCCCceEEEE-------CCc
Confidence 345555555443 4668999999999999998888878999999999999988752 3566666 444
Q ss_pred hhccCCCCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647 92 EQNVAAQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCY 138 (265)
Q Consensus 92 ~~~~~~~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~ 138 (265)
.....+.++||+|++..+++++ .+.+.+.|+ |||.+++...
T Consensus 136 ~~~~~~~~~fD~I~~~~~~~~~-----~~~l~~~L~-~gG~lv~~~~ 176 (212)
T PRK00312 136 WKGWPAYAPFDRILVTAAAPEI-----PRALLEQLK-EGGILVAPVG 176 (212)
T ss_pred ccCCCcCCCcCEEEEccCchhh-----hHHHHHhcC-CCcEEEEEEc
Confidence 3322234789999998776654 456789999 9999987554
No 85
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.38 E-value=8e-12 Score=100.34 Aligned_cols=95 Identities=19% Similarity=0.205 Sum_probs=73.3
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcCC--cEEEEcCCHHHHHHHHcC------CCceEEecCCccchhhhhhccCCCCceeE
Q 024647 32 TNHELAWDVGTGSGQAAASLSGIFE--NVIGTETSPKQIEFATKL------PNIRYELTSPAMSIAELEQNVAAQSTVDL 103 (265)
Q Consensus 32 ~~~~~vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~d~~~~~~~~~~~Dl 103 (265)
.++.+|||+|||+|.++..+++.++ +|+++|+|+.+++.+++. .++.+.. +|+.. +. .++||+
T Consensus 30 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~-------~d~~~-~~-~~~~D~ 100 (187)
T PRK08287 30 HRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIP-------GEAPI-EL-PGKADA 100 (187)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEe-------cCchh-hc-CcCCCE
Confidence 4668999999999999999998764 799999999999988751 3455555 44321 22 357999
Q ss_pred EEeccccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647 104 VTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCY 138 (265)
Q Consensus 104 v~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~ 138 (265)
|++....+ ....++..+.+.|+ |||.+++...
T Consensus 101 v~~~~~~~--~~~~~l~~~~~~Lk-~gG~lv~~~~ 132 (187)
T PRK08287 101 IFIGGSGG--NLTAIIDWSLAHLH-PGGRLVLTFI 132 (187)
T ss_pred EEECCCcc--CHHHHHHHHHHhcC-CCeEEEEEEe
Confidence 99876543 34678999999999 9999987543
No 86
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.38 E-value=5.3e-12 Score=108.75 Aligned_cols=92 Identities=18% Similarity=0.191 Sum_probs=67.7
Q ss_pred CCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcCC-----------CceEEecCCccchhhhhhccCCCCce
Q 024647 33 NHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKLP-----------NIRYELTSPAMSIAELEQNVAAQSTV 101 (265)
Q Consensus 33 ~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~-----------~~~~~~~~~~~~~~d~~~~~~~~~~~ 101 (265)
++.+|||+|||+|.++..+++.+.+|+|+|+|+.|++.++++. ++.+.. .|++.+ +++|
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~-------~Dl~~l---~~~f 213 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEA-------NDLESL---SGKY 213 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEE-------cchhhc---CCCc
Confidence 4679999999999999999999889999999999999887531 233444 555443 4789
Q ss_pred eEEEeccccccC-Ch--hHHHHHHHHHhcCCCcEEEEE
Q 024647 102 DLVTIAQAMHWF-DL--PQFYNQVKWVLKKPNGVIATW 136 (265)
Q Consensus 102 Dlv~~~~~~~~~-~~--~~~l~~~~~~Lk~pgG~l~~~ 136 (265)
|+|+|..+++++ +. ..+++.+.+ +. ++|.++.+
T Consensus 214 D~Vv~~~vL~H~p~~~~~~ll~~l~~-l~-~g~liIs~ 249 (315)
T PLN02585 214 DTVTCLDVLIHYPQDKADGMIAHLAS-LA-EKRLIISF 249 (315)
T ss_pred CEEEEcCEEEecCHHHHHHHHHHHHh-hc-CCEEEEEe
Confidence 999999987666 32 235555554 56 66665543
No 87
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.37 E-value=1.2e-12 Score=110.40 Aligned_cols=113 Identities=18% Similarity=0.199 Sum_probs=82.6
Q ss_pred cHHHHHHHHhhCCCCCeEEEEcCCcchhHHHHHhcCCc-EEEEcCCHHHHHHHHcC---CCceEEecCCccchhhhhhcc
Q 024647 20 PEELFKFITSKTTNHELAWDVGTGSGQAAASLSGIFEN-VIGTETSPKQIEFATKL---PNIRYELTSPAMSIAELEQNV 95 (265)
Q Consensus 20 ~~~l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~-v~~vD~s~~~~~~a~~~---~~~~~~~~~~~~~~~d~~~~~ 95 (265)
+.-.+++|..+..++.+|||+|||+|.++...++.++. ++|+|++|..++.++.. .++.-. ......+....
T Consensus 149 T~lcL~~Le~~~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~---~~~~~~~~~~~- 224 (300)
T COG2264 149 TSLCLEALEKLLKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELL---VQAKGFLLLEV- 224 (300)
T ss_pred HHHHHHHHHHhhcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchh---hhcccccchhh-
Confidence 44567788888889999999999999999999999985 99999999999999852 233310 00000111111
Q ss_pred CCCCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647 96 AAQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCYT 139 (265)
Q Consensus 96 ~~~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~~ 139 (265)
...++||+|++|-..+ -...+..++.+.|+ |||+++++..-
T Consensus 225 ~~~~~~DvIVANILA~--vl~~La~~~~~~lk-pgg~lIlSGIl 265 (300)
T COG2264 225 PENGPFDVIVANILAE--VLVELAPDIKRLLK-PGGRLILSGIL 265 (300)
T ss_pred cccCcccEEEehhhHH--HHHHHHHHHHHHcC-CCceEEEEeeh
Confidence 2346999999984211 12478999999999 99999998764
No 88
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.37 E-value=1.3e-12 Score=109.61 Aligned_cols=105 Identities=16% Similarity=0.174 Sum_probs=76.1
Q ss_pred HHHHHHHHhhCCCCCeEEEEcCCcchhHHHHHhcCCc-EEEEcCCHHHHHHHHcC---CCceEEecCCccchhhhhhccC
Q 024647 21 EELFKFITSKTTNHELAWDVGTGSGQAAASLSGIFEN-VIGTETSPKQIEFATKL---PNIRYELTSPAMSIAELEQNVA 96 (265)
Q Consensus 21 ~~l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~-v~~vD~s~~~~~~a~~~---~~~~~~~~~~~~~~~d~~~~~~ 96 (265)
..+++.+.....++.+|||+|||+|.++..+++.++. |+|+|+|+.+++.|++. .++. +.-.+..
T Consensus 107 ~~~l~~l~~~~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~-----------~~~~~~~ 175 (250)
T PRK00517 107 RLCLEALEKLVLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVE-----------LNVYLPQ 175 (250)
T ss_pred HHHHHHHHhhcCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCC-----------ceEEEcc
Confidence 3455566655567889999999999999998888765 99999999999998752 1221 0001111
Q ss_pred CCCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647 97 AQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCYT 139 (265)
Q Consensus 97 ~~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~~ 139 (265)
.+.+||+|+++...+ ....+++++.++|+ |||.+++....
T Consensus 176 ~~~~fD~Vvani~~~--~~~~l~~~~~~~Lk-pgG~lilsgi~ 215 (250)
T PRK00517 176 GDLKADVIVANILAN--PLLELAPDLARLLK-PGGRLILSGIL 215 (250)
T ss_pred CCCCcCEEEEcCcHH--HHHHHHHHHHHhcC-CCcEEEEEECc
Confidence 222799999875432 23468899999999 99999987654
No 89
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.37 E-value=8.7e-12 Score=108.81 Aligned_cols=115 Identities=16% Similarity=0.087 Sum_probs=87.1
Q ss_pred cHHHHHHHHhh--CCCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcC------CCceEEecCCccchhhh
Q 024647 20 PEELFKFITSK--TTNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKL------PNIRYELTSPAMSIAEL 91 (265)
Q Consensus 20 ~~~l~~~l~~~--~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~d~ 91 (265)
.+.+...+.+. .+++.+|||.|||+|.++..++..+.+++|+|+++.|++.++.. .++.+.. +|+
T Consensus 167 ~~~la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~-------~D~ 239 (329)
T TIGR01177 167 DPKLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEHYGIEDFFVKR-------GDA 239 (329)
T ss_pred CHHHHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEe-------cch
Confidence 44555555443 35677899999999999999888888999999999999987642 2344444 777
Q ss_pred hhccCCCCceeEEEecccccc--------C-C-hhHHHHHHHHHhcCCCcEEEEEecCCCC
Q 024647 92 EQNVAAQSTVDLVTIAQAMHW--------F-D-LPQFYNQVKWVLKKPNGVIATWCYTVPE 142 (265)
Q Consensus 92 ~~~~~~~~~~Dlv~~~~~~~~--------~-~-~~~~l~~~~~~Lk~pgG~l~~~~~~~~~ 142 (265)
.+++.++++||+|+++..... . + ...+++++.++|+ |||+++++.+....
T Consensus 240 ~~l~~~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk-~gG~lv~~~~~~~~ 299 (329)
T TIGR01177 240 TKLPLSSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLK-SEGWIVYAVPTRID 299 (329)
T ss_pred hcCCcccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHcc-CCcEEEEEEcCCCC
Confidence 788777789999999753221 1 1 3579999999999 99999998876443
No 90
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.35 E-value=6.9e-12 Score=103.87 Aligned_cols=90 Identities=19% Similarity=0.283 Sum_probs=68.8
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcC-------CCceEEecCCccchhhhhhccCCCCceeEE
Q 024647 32 TNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKL-------PNIRYELTSPAMSIAELEQNVAAQSTVDLV 104 (265)
Q Consensus 32 ~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv 104 (265)
.++.+|||+|||+|.++..+++.+.+|+|+|+|+.|++.|++. .++.+.. +|++ ..+++||+|
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~-------~d~~---~~~~~fD~v 131 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPEAGLAGNITFEV-------GDLE---SLLGRFDTV 131 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEE-------cCch---hccCCcCEE
Confidence 4567899999999999999999988999999999999998752 2455555 4432 235789999
Q ss_pred EeccccccC-C--hhHHHHHHHHHhcCCCcE
Q 024647 105 TIAQAMHWF-D--LPQFYNQVKWVLKKPNGV 132 (265)
Q Consensus 105 ~~~~~~~~~-~--~~~~l~~~~~~Lk~pgG~ 132 (265)
++..++|++ + ....++++.+.++ +++.
T Consensus 132 ~~~~~l~~~~~~~~~~~l~~l~~~~~-~~~~ 161 (230)
T PRK07580 132 VCLDVLIHYPQEDAARMLAHLASLTR-GSLI 161 (230)
T ss_pred EEcchhhcCCHHHHHHHHHHHHhhcC-CeEE
Confidence 999998665 2 3357777777665 4443
No 91
>PRK00811 spermidine synthase; Provisional
Probab=99.33 E-value=1.6e-11 Score=104.72 Aligned_cols=112 Identities=16% Similarity=0.219 Sum_probs=80.4
Q ss_pred CcHHHHHHHHhhCCCCCeEEEEcCCcchhHHHHHhcC--CcEEEEcCCHHHHHHHHcC-----------CCceEEecCCc
Q 024647 19 YPEELFKFITSKTTNHELAWDVGTGSGQAAASLSGIF--ENVIGTETSPKQIEFATKL-----------PNIRYELTSPA 85 (265)
Q Consensus 19 y~~~l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~-----------~~~~~~~~~~~ 85 (265)
|.+.+........+.+.+||++|||+|.+++.++++. .+|++||+++.+++.|++. ++++++.
T Consensus 62 Y~e~l~h~~~~~~~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~---- 137 (283)
T PRK00811 62 YHEMMTHVPLFAHPNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVI---- 137 (283)
T ss_pred HHHHhhhHHHhhCCCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEE----
Confidence 4333333323334567899999999999999998873 4799999999999999862 2344444
Q ss_pred cchhhhhhc-cCCCCceeEEEeccccccCC-----hhHHHHHHHHHhcCCCcEEEEEec
Q 024647 86 MSIAELEQN-VAAQSTVDLVTIAQAMHWFD-----LPQFYNQVKWVLKKPNGVIATWCY 138 (265)
Q Consensus 86 ~~~~d~~~~-~~~~~~~Dlv~~~~~~~~~~-----~~~~l~~~~~~Lk~pgG~l~~~~~ 138 (265)
+|+..+ ....++||+|++...-++.. ...+++.+.+.|+ |||+++++..
T Consensus 138 ---~Da~~~l~~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~-~gGvlv~~~~ 192 (283)
T PRK00811 138 ---GDGIKFVAETENSFDVIIVDSTDPVGPAEGLFTKEFYENCKRALK-EDGIFVAQSG 192 (283)
T ss_pred ---CchHHHHhhCCCcccEEEECCCCCCCchhhhhHHHHHHHHHHhcC-CCcEEEEeCC
Confidence 555443 22457899999976555432 2568899999999 9999998644
No 92
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.31 E-value=9.7e-12 Score=107.52 Aligned_cols=96 Identities=14% Similarity=0.146 Sum_probs=75.3
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcCC--cEEEEcCCHHHHHHHHcC-------CCceEEecCCccchhhhhhccCCCCcee
Q 024647 32 TNHELAWDVGTGSGQAAASLSGIFE--NVIGTETSPKQIEFATKL-------PNIRYELTSPAMSIAELEQNVAAQSTVD 102 (265)
Q Consensus 32 ~~~~~vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~d~~~~~~~~~~~D 102 (265)
.+..+|||||||+|.++..++++++ +++++|. +.+++.+++. .++++.. +|+.+.+++ .+|
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~-------~d~~~~~~~--~~D 217 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIA-------VDIYKESYP--EAD 217 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEe-------cCccCCCCC--CCC
Confidence 4557999999999999999999886 5999997 7889887642 2455665 565544333 369
Q ss_pred EEEeccccccCCh---hHHHHHHHHHhcCCCcEEEEEec
Q 024647 103 LVTIAQAMHWFDL---PQFYNQVKWVLKKPNGVIATWCY 138 (265)
Q Consensus 103 lv~~~~~~~~~~~---~~~l~~~~~~Lk~pgG~l~~~~~ 138 (265)
+|++...+|..+. ..++++++++|+ |||++++.+.
T Consensus 218 ~v~~~~~lh~~~~~~~~~il~~~~~~L~-pgG~l~i~d~ 255 (306)
T TIGR02716 218 AVLFCRILYSANEQLSTIMCKKAFDAMR-SGGRLLILDM 255 (306)
T ss_pred EEEeEhhhhcCChHHHHHHHHHHHHhcC-CCCEEEEEEe
Confidence 9999999886633 468999999999 9999998765
No 93
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.31 E-value=3e-11 Score=101.33 Aligned_cols=109 Identities=23% Similarity=0.247 Sum_probs=80.0
Q ss_pred cHHHHHHHHhhCC-CCCeEEEEcCCcchhHHHHHhcCC--cEEEEcCCHHHHHHHHcC------CCceEEecCCccchhh
Q 024647 20 PEELFKFITSKTT-NHELAWDVGTGSGQAAASLSGIFE--NVIGTETSPKQIEFATKL------PNIRYELTSPAMSIAE 90 (265)
Q Consensus 20 ~~~l~~~l~~~~~-~~~~vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~d 90 (265)
+..+++.+..... .+.+|||+|||+|.++..+++..+ +++|+|+++.+++.++.. .++.+.. +|
T Consensus 73 ~~~l~~~~l~~~~~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~-------~d 145 (251)
T TIGR03534 73 TEELVEAALERLKKGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQ-------SD 145 (251)
T ss_pred hHHHHHHHHHhcccCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEE-------Cc
Confidence 3556666665543 345899999999999999998753 799999999999988752 3466666 55
Q ss_pred hhhccCCCCceeEEEeccccccC-C--------------------------hhHHHHHHHHHhcCCCcEEEEEe
Q 024647 91 LEQNVAAQSTVDLVTIAQAMHWF-D--------------------------LPQFYNQVKWVLKKPNGVIATWC 137 (265)
Q Consensus 91 ~~~~~~~~~~~Dlv~~~~~~~~~-~--------------------------~~~~l~~~~~~Lk~pgG~l~~~~ 137 (265)
+.. +.+.++||+|+++...+.. + ...+++++.++|+ |||.+++..
T Consensus 146 ~~~-~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~-~gG~~~~~~ 217 (251)
T TIGR03534 146 WFE-PLPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLK-PGGWLLLEI 217 (251)
T ss_pred hhc-cCcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcc-cCCEEEEEE
Confidence 544 2456789999997543321 0 1257889999999 999998854
No 94
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.31 E-value=6.7e-12 Score=98.23 Aligned_cols=75 Identities=17% Similarity=0.201 Sum_probs=64.4
Q ss_pred EEEcCCHHHHHHHHcC---------CCceEEecCCccchhhhhhccCCCCceeEEEeccccccC-ChhHHHHHHHHHhcC
Q 024647 59 IGTETSPKQIEFATKL---------PNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWF-DLPQFYNQVKWVLKK 128 (265)
Q Consensus 59 ~~vD~s~~~~~~a~~~---------~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~-~~~~~l~~~~~~Lk~ 128 (265)
+|+|+|+.|++.|++. .++++.+ +|++++++++++||+|++.+++|++ |+..+++++.|+||
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~-------~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLk- 72 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIE-------GDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLK- 72 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEE-------echhhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcC-
Confidence 4899999999998642 1356666 7888899889999999999999988 99999999999999
Q ss_pred CCcEEEEEecCCC
Q 024647 129 PNGVIATWCYTVP 141 (265)
Q Consensus 129 pgG~l~~~~~~~~ 141 (265)
|||.+++.++..+
T Consensus 73 pGG~l~i~d~~~~ 85 (160)
T PLN02232 73 PGSRVSILDFNKS 85 (160)
T ss_pred cCeEEEEEECCCC
Confidence 9999999877643
No 95
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.30 E-value=5.8e-11 Score=97.20 Aligned_cols=118 Identities=14% Similarity=-0.006 Sum_probs=88.4
Q ss_pred cHHHHHHHHhhC-CCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcCC-----------CceEEecCCccc
Q 024647 20 PEELFKFITSKT-TNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKLP-----------NIRYELTSPAMS 87 (265)
Q Consensus 20 ~~~l~~~l~~~~-~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~-----------~~~~~~~~~~~~ 87 (265)
.+-+.+++.... +++.+||+.|||.|.-...|++++.+|+|+|+|+..++.+.+.. ...+....+++.
T Consensus 29 np~L~~~~~~l~~~~~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~ 108 (226)
T PRK13256 29 NEFLVKHFSKLNINDSSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIY 108 (226)
T ss_pred CHHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEE
Confidence 566667765543 35579999999999999999999999999999999999874310 011122234444
Q ss_pred hhhhhhccCC---CCceeEEEeccccccCCh---hHHHHHHHHHhcCCCcEEEEEec
Q 024647 88 IAELEQNVAA---QSTVDLVTIAQAMHWFDL---PQFYNQVKWVLKKPNGVIATWCY 138 (265)
Q Consensus 88 ~~d~~~~~~~---~~~~Dlv~~~~~~~~~~~---~~~l~~~~~~Lk~pgG~l~~~~~ 138 (265)
.+|+-+++.. .+.||+|+-..+++.+++ .+..+.+.++|+ |||.+++...
T Consensus 109 ~gD~f~l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~-pgg~llll~~ 164 (226)
T PRK13256 109 VADIFNLPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCS-NNTQILLLVM 164 (226)
T ss_pred EccCcCCCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhC-CCcEEEEEEE
Confidence 4777776531 257999999998888854 479999999999 9999886554
No 96
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.29 E-value=6.5e-11 Score=95.80 Aligned_cols=112 Identities=18% Similarity=0.254 Sum_probs=78.0
Q ss_pred CCCcHHHHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhcC--CcEEEEcCCHHHHHHHHcC------CCceEEecCCcc
Q 024647 17 PNYPEELFKFITSKT--TNHELAWDVGTGSGQAAASLSGIF--ENVIGTETSPKQIEFATKL------PNIRYELTSPAM 86 (265)
Q Consensus 17 p~y~~~l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~ 86 (265)
|.-+.+....+.... .++.+|||+|||+|.++..+++.. .+|+++|+|+.|++.+++. .++.+...
T Consensus 22 p~t~~~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~---- 97 (196)
T PRK07402 22 PLTKREVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEG---- 97 (196)
T ss_pred CCCHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEEC----
Confidence 433455554555554 356899999999999999998654 5799999999999988752 35666664
Q ss_pred chhhhhh-ccCCCCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647 87 SIAELEQ-NVAAQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCYT 139 (265)
Q Consensus 87 ~~~d~~~-~~~~~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~~ 139 (265)
|+.+ +......+|.++.... .+...+++++.++|+ |||.+++..+.
T Consensus 98 ---d~~~~~~~~~~~~d~v~~~~~---~~~~~~l~~~~~~Lk-pgG~li~~~~~ 144 (196)
T PRK07402 98 ---SAPECLAQLAPAPDRVCIEGG---RPIKEILQAVWQYLK-PGGRLVATASS 144 (196)
T ss_pred ---chHHHHhhCCCCCCEEEEECC---cCHHHHHHHHHHhcC-CCeEEEEEeec
Confidence 3332 1111223566655321 245789999999999 99999987654
No 97
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.29 E-value=3.8e-11 Score=97.29 Aligned_cols=97 Identities=18% Similarity=0.210 Sum_probs=73.1
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcC---CcEEEEcCCHHHHHHHHcC-------CCceEEecCCccchhhhhhc-cCCCCc
Q 024647 32 TNHELAWDVGTGSGQAAASLSGIF---ENVIGTETSPKQIEFATKL-------PNIRYELTSPAMSIAELEQN-VAAQST 100 (265)
Q Consensus 32 ~~~~~vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~d~~~~-~~~~~~ 100 (265)
.++.+|||+|||+|.++..++... .+|+++|+++.|++.+++. .++.+.. +|+.+. +...+.
T Consensus 39 ~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~-------~d~~~~l~~~~~~ 111 (198)
T PRK00377 39 RKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIK-------GEAPEILFTINEK 111 (198)
T ss_pred CCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEE-------echhhhHhhcCCC
Confidence 466899999999999999987652 4799999999999987641 3455555 444432 222368
Q ss_pred eeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647 101 VDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCY 138 (265)
Q Consensus 101 ~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~ 138 (265)
||+|++... ..+...+++++.++|+ |||.+++...
T Consensus 112 ~D~V~~~~~--~~~~~~~l~~~~~~Lk-pgG~lv~~~~ 146 (198)
T PRK00377 112 FDRIFIGGG--SEKLKEIISASWEIIK-KGGRIVIDAI 146 (198)
T ss_pred CCEEEECCC--cccHHHHHHHHHHHcC-CCcEEEEEee
Confidence 999998642 2366789999999999 9999987443
No 98
>PHA03411 putative methyltransferase; Provisional
Probab=99.29 E-value=3.4e-11 Score=100.56 Aligned_cols=108 Identities=18% Similarity=0.241 Sum_probs=80.1
Q ss_pred cHHHHHHHHhhCCCCCeEEEEcCCcchhHHHHHhcC--CcEEEEcCCHHHHHHHHc-CCCceEEecCCccchhhhhhccC
Q 024647 20 PEELFKFITSKTTNHELAWDVGTGSGQAAASLSGIF--ENVIGTETSPKQIEFATK-LPNIRYELTSPAMSIAELEQNVA 96 (265)
Q Consensus 20 ~~~l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~-~~~~~~~~~~~~~~~~d~~~~~~ 96 (265)
|+.++..+........+|||+|||+|.++..++.+. .+|+++|+|+.|++.+++ .+++.+.. +|+..+.
T Consensus 51 P~~i~~~f~~~~~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~~v~~v~-------~D~~e~~- 122 (279)
T PHA03411 51 PEGLAWDFTIDAHCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLPEAEWIT-------SDVFEFE- 122 (279)
T ss_pred CHHHHHHHHhccccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcCCEEEE-------Cchhhhc-
Confidence 556664443223345789999999999999988764 489999999999999986 35666666 6666654
Q ss_pred CCCceeEEEeccccccCC---------------------hhHHHHHHHHHhcCCCcEEEEE
Q 024647 97 AQSTVDLVTIAQAMHWFD---------------------LPQFYNQVKWVLKKPNGVIATW 136 (265)
Q Consensus 97 ~~~~~Dlv~~~~~~~~~~---------------------~~~~l~~~~~~Lk~pgG~l~~~ 136 (265)
...+||+|+++..+++.+ ..+++.....+|+ |+|.+.+.
T Consensus 123 ~~~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~-p~G~~~~~ 182 (279)
T PHA03411 123 SNEKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIV-PTGSAGFA 182 (279)
T ss_pred ccCCCcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheec-CCceEEEE
Confidence 346899999998887642 1356677788999 99976654
No 99
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.29 E-value=3.6e-11 Score=85.73 Aligned_cols=93 Identities=28% Similarity=0.451 Sum_probs=74.9
Q ss_pred eEEEEcCCcchhHHHHHh-cCCcEEEEcCCHHHHHHHHc------CCCceEEecCCccchhhhhhccC-CCCceeEEEec
Q 024647 36 LAWDVGTGSGQAAASLSG-IFENVIGTETSPKQIEFATK------LPNIRYELTSPAMSIAELEQNVA-AQSTVDLVTIA 107 (265)
Q Consensus 36 ~vlDvGcG~G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~------~~~~~~~~~~~~~~~~d~~~~~~-~~~~~Dlv~~~ 107 (265)
+++|+|||+|..+..+++ ...+++++|+++.++..+++ ..++.+.. +|+.+... ..+++|+|+++
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~d~i~~~ 73 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLK-------GDAEELPPEADESFDVIISD 73 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEE-------cChhhhccccCCceEEEEEc
Confidence 489999999999999988 45689999999999988772 24455655 44444432 45789999999
Q ss_pred ccccc-C-ChhHHHHHHHHHhcCCCcEEEEE
Q 024647 108 QAMHW-F-DLPQFYNQVKWVLKKPNGVIATW 136 (265)
Q Consensus 108 ~~~~~-~-~~~~~l~~~~~~Lk~pgG~l~~~ 136 (265)
..+++ . +...+++.+.+.|+ |||.+++.
T Consensus 74 ~~~~~~~~~~~~~l~~~~~~l~-~~g~~~~~ 103 (107)
T cd02440 74 PPLHHLVEDLARFLEEARRLLK-PGGVLVLT 103 (107)
T ss_pred cceeehhhHHHHHHHHHHHHcC-CCCEEEEE
Confidence 99988 5 67789999999999 99999875
No 100
>PRK01581 speE spermidine synthase; Validated
Probab=99.28 E-value=4.3e-11 Score=103.64 Aligned_cols=112 Identities=16% Similarity=0.178 Sum_probs=82.0
Q ss_pred CcHHHHHHHHhhCCCCCeEEEEcCCcchhHHHHHhcC--CcEEEEcCCHHHHHHHHcC-------------CCceEEecC
Q 024647 19 YPEELFKFITSKTTNHELAWDVGTGSGQAAASLSGIF--ENVIGTETSPKQIEFATKL-------------PNIRYELTS 83 (265)
Q Consensus 19 y~~~l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~-------------~~~~~~~~~ 83 (265)
|.+.++.-.....+.+.+||++|||+|...+.+.++. .+|++||+++.|++.|++. +++++..
T Consensus 136 YHE~Lvhp~m~~h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi-- 213 (374)
T PRK01581 136 YHEALVHPIMSKVIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHV-- 213 (374)
T ss_pred HHHHHHHHHHHhCCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEE--
Confidence 5556665555555677899999999999999998875 4799999999999999852 2344444
Q ss_pred Cccchhhhhh-ccCCCCceeEEEecccccc------CChhHHHHHHHHHhcCCCcEEEEEec
Q 024647 84 PAMSIAELEQ-NVAAQSTVDLVTIAQAMHW------FDLPQFYNQVKWVLKKPNGVIATWCY 138 (265)
Q Consensus 84 ~~~~~~d~~~-~~~~~~~~Dlv~~~~~~~~------~~~~~~l~~~~~~Lk~pgG~l~~~~~ 138 (265)
+|+.. +....+.||+|++...-.. +-...+++.+.+.|+ |||+++++..
T Consensus 214 -----~Da~~fL~~~~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~Lk-PgGV~V~Qs~ 269 (374)
T PRK01581 214 -----CDAKEFLSSPSSLYDVIIIDFPDPATELLSTLYTSELFARIATFLT-EDGAFVCQSN 269 (374)
T ss_pred -----CcHHHHHHhcCCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcC-CCcEEEEecC
Confidence 55444 2334568999999853211 112468999999999 9999988754
No 101
>PRK04457 spermidine synthase; Provisional
Probab=99.28 E-value=2.4e-11 Score=102.55 Aligned_cols=99 Identities=13% Similarity=0.238 Sum_probs=74.2
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcCC--cEEEEcCCHHHHHHHHcC-------CCceEEecCCccchhhhhhc-cCCCCce
Q 024647 32 TNHELAWDVGTGSGQAAASLSGIFE--NVIGTETSPKQIEFATKL-------PNIRYELTSPAMSIAELEQN-VAAQSTV 101 (265)
Q Consensus 32 ~~~~~vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~d~~~~-~~~~~~~ 101 (265)
+++.+|||||||+|.++..++++.+ +++++|+++.+++.|++. ++++++. +|+.+. ....++|
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~-------~Da~~~l~~~~~~y 137 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIE-------ADGAEYIAVHRHST 137 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEE-------CCHHHHHHhCCCCC
Confidence 4567899999999999999988764 699999999999999862 3455665 454332 2223589
Q ss_pred eEEEecccccc------CChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647 102 DLVTIAQAMHW------FDLPQFYNQVKWVLKKPNGVIATWCYT 139 (265)
Q Consensus 102 Dlv~~~~~~~~------~~~~~~l~~~~~~Lk~pgG~l~~~~~~ 139 (265)
|+|++.. ++- +....+++++.++|+ |||++++..+.
T Consensus 138 D~I~~D~-~~~~~~~~~l~t~efl~~~~~~L~-pgGvlvin~~~ 179 (262)
T PRK04457 138 DVILVDG-FDGEGIIDALCTQPFFDDCRNALS-SDGIFVVNLWS 179 (262)
T ss_pred CEEEEeC-CCCCCCccccCcHHHHHHHHHhcC-CCcEEEEEcCC
Confidence 9999863 221 123689999999999 99999985443
No 102
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.27 E-value=3e-11 Score=99.46 Aligned_cols=106 Identities=18% Similarity=0.215 Sum_probs=79.1
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcC--CcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhcc--CCCCceeEEEec
Q 024647 32 TNHELAWDVGTGSGQAAASLSGIF--ENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNV--AAQSTVDLVTIA 107 (265)
Q Consensus 32 ~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~Dlv~~~ 107 (265)
+...+|||+|||+|.++..++++. .+|++||+++.|.+.|++.-+.+-....+++.++|+.++. ....+||+|+|+
T Consensus 43 ~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~N 122 (248)
T COG4123 43 PKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICN 122 (248)
T ss_pred ccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeC
Confidence 346889999999999999999985 4799999999999999863111222333344447877764 234479999998
Q ss_pred cccccC-------------------ChhHHHHHHHHHhcCCCcEEEEEec
Q 024647 108 QAMHWF-------------------DLPQFYNQVKWVLKKPNGVIATWCY 138 (265)
Q Consensus 108 ~~~~~~-------------------~~~~~l~~~~~~Lk~pgG~l~~~~~ 138 (265)
-..+-. +.+.+++.+.++|| |||.+++...
T Consensus 123 PPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk-~~G~l~~V~r 171 (248)
T COG4123 123 PPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLK-PGGRLAFVHR 171 (248)
T ss_pred CCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHcc-CCCEEEEEec
Confidence 754322 34678999999999 9999998665
No 103
>PRK14968 putative methyltransferase; Provisional
Probab=99.27 E-value=6.6e-11 Score=94.81 Aligned_cols=98 Identities=22% Similarity=0.256 Sum_probs=73.5
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcC------CC--ceEEecCCccchhhhhhccCCCCceeE
Q 024647 32 TNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKL------PN--IRYELTSPAMSIAELEQNVAAQSTVDL 103 (265)
Q Consensus 32 ~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~------~~--~~~~~~~~~~~~~d~~~~~~~~~~~Dl 103 (265)
.++.+|||+|||+|.++..+++...+++++|+|+.+++.+++. .+ +.+.. .|+.+. +.+.+||+
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~-------~d~~~~-~~~~~~d~ 93 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIR-------SDLFEP-FRGDKFDV 93 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEe-------cccccc-ccccCceE
Confidence 4567899999999999999999888999999999999988642 12 45554 444332 34458999
Q ss_pred EEeccccccC----------------------ChhHHHHHHHHHhcCCCcEEEEEec
Q 024647 104 VTIAQAMHWF----------------------DLPQFYNQVKWVLKKPNGVIATWCY 138 (265)
Q Consensus 104 v~~~~~~~~~----------------------~~~~~l~~~~~~Lk~pgG~l~~~~~ 138 (265)
|+++..+... ....+++++.++|+ |||.+++...
T Consensus 94 vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk-~gG~~~~~~~ 149 (188)
T PRK14968 94 ILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLK-PGGRILLLQS 149 (188)
T ss_pred EEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcC-CCeEEEEEEc
Confidence 9987643321 13458999999999 9999887654
No 104
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.25 E-value=6.1e-12 Score=107.04 Aligned_cols=119 Identities=19% Similarity=0.242 Sum_probs=83.0
Q ss_pred HHHHHHHHhhCCCCCeEEEEcCCcchhHHHHHhcCC-cEEEEcCCHHHHHHHHcC---CCc--eEEecCCccchhhhhhc
Q 024647 21 EELFKFITSKTTNHELAWDVGTGSGQAAASLSGIFE-NVIGTETSPKQIEFATKL---PNI--RYELTSPAMSIAELEQN 94 (265)
Q Consensus 21 ~~l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~---~~~--~~~~~~~~~~~~d~~~~ 94 (265)
.-.+++|..+..++.+|||+|||||.++...++.++ +|+|+|++|..++.|+.. .++ .+.... ..+
T Consensus 149 ~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~-------~~~- 220 (295)
T PF06325_consen 149 RLCLELLEKYVKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVSL-------SED- 220 (295)
T ss_dssp HHHHHHHHHHSSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEESC-------TSC-
T ss_pred HHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEE-------ecc-
Confidence 445677777778889999999999999999999998 599999999999998862 111 221110 111
Q ss_pred cCCCCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEecCCCCCChHHHHhhc
Q 024647 95 VAAQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCYTVPEVNVSVDAVFQ 152 (265)
Q Consensus 95 ~~~~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~~~~~~~~~~~~~~~ 152 (265)
...++||+|++|-..+ -....+..+.++|+ |||.++++..-... ...+.++|+
T Consensus 221 -~~~~~~dlvvANI~~~--vL~~l~~~~~~~l~-~~G~lIlSGIl~~~-~~~v~~a~~ 273 (295)
T PF06325_consen 221 -LVEGKFDLVVANILAD--VLLELAPDIASLLK-PGGYLILSGILEEQ-EDEVIEAYK 273 (295)
T ss_dssp -TCCS-EEEEEEES-HH--HHHHHHHHCHHHEE-EEEEEEEEEEEGGG-HHHHHHHHH
T ss_pred -cccccCCEEEECCCHH--HHHHHHHHHHHhhC-CCCEEEEccccHHH-HHHHHHHHH
Confidence 2347899999984322 12357788899999 99999998775433 244455544
No 105
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.24 E-value=3.5e-11 Score=106.22 Aligned_cols=110 Identities=17% Similarity=0.235 Sum_probs=78.9
Q ss_pred cHHHHHHHHhhCCCCCeEEEEcCCcchhHHHHHhcC--CcEEEEcCCHHHHHHHHcC-----CCceEEecCCccchhhhh
Q 024647 20 PEELFKFITSKTTNHELAWDVGTGSGQAAASLSGIF--ENVIGTETSPKQIEFATKL-----PNIRYELTSPAMSIAELE 92 (265)
Q Consensus 20 ~~~l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~~~~~d~~ 92 (265)
++.+++.+.+..+++.+|||+|||+|.++..++... .+|+|+|+|+.|++.|++. .++.+.+ +|+.
T Consensus 238 TE~LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~-------gDl~ 310 (423)
T PRK14966 238 TEHLVEAVLARLPENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAH-------GSWF 310 (423)
T ss_pred HHHHHHHhhhccCCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEE-------cchh
Confidence 567777777666666789999999999999998764 4799999999999988752 2455555 5553
Q ss_pred hccC-CCCceeEEEecccccc------C------C--------------hhHHHHHHHHHhcCCCcEEEEEe
Q 024647 93 QNVA-AQSTVDLVTIAQAMHW------F------D--------------LPQFYNQVKWVLKKPNGVIATWC 137 (265)
Q Consensus 93 ~~~~-~~~~~Dlv~~~~~~~~------~------~--------------~~~~l~~~~~~Lk~pgG~l~~~~ 137 (265)
+... ..++||+|+++-...- . + ...+++.+.+.|+ |||.+++..
T Consensus 311 e~~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~Lk-pgG~lilEi 381 (423)
T PRK14966 311 DTDMPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLA-EGGFLLLEH 381 (423)
T ss_pred ccccccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcC-CCcEEEEEE
Confidence 3222 2457999999763210 0 0 1256667788999 999988744
No 106
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.23 E-value=4.2e-11 Score=102.23 Aligned_cols=110 Identities=18% Similarity=0.145 Sum_probs=77.0
Q ss_pred cHHHHHHHHh-hC--CCCCeEEEEcCCcchhHHHHHhcCC--cEEEEcCCHHHHHHHHcC-------CCceEEecCCccc
Q 024647 20 PEELFKFITS-KT--TNHELAWDVGTGSGQAAASLSGIFE--NVIGTETSPKQIEFATKL-------PNIRYELTSPAMS 87 (265)
Q Consensus 20 ~~~l~~~l~~-~~--~~~~~vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~ 87 (265)
...++..... .. .++.+|||+|||+|.++..++++++ +|+|+|+|+.+++.|++. .++.+..
T Consensus 105 te~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~------ 178 (284)
T TIGR03533 105 IAELIEDGFAPWLEPEPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQ------ 178 (284)
T ss_pred hHHHHHHHHHHHhccCCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEE------
Confidence 3455544433 22 2457899999999999999998764 799999999999988752 2456666
Q ss_pred hhhhhhccCCCCceeEEEecccc------c-----c-CC--------------hhHHHHHHHHHhcCCCcEEEEEec
Q 024647 88 IAELEQNVAAQSTVDLVTIAQAM------H-----W-FD--------------LPQFYNQVKWVLKKPNGVIATWCY 138 (265)
Q Consensus 88 ~~d~~~~~~~~~~~Dlv~~~~~~------~-----~-~~--------------~~~~l~~~~~~Lk~pgG~l~~~~~ 138 (265)
+|+.+. +++++||+|+++-.. . + .+ ...+++++.++|+ |||.+++...
T Consensus 179 -~D~~~~-~~~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~-~gG~l~~e~g 252 (284)
T TIGR03533 179 -SDLFAA-LPGRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLN-ENGVLVVEVG 252 (284)
T ss_pred -Cchhhc-cCCCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcC-CCCEEEEEEC
Confidence 554322 345689999997311 0 0 01 1357889999999 9999988554
No 107
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.22 E-value=1.6e-10 Score=99.91 Aligned_cols=104 Identities=18% Similarity=0.184 Sum_probs=76.0
Q ss_pred HHHHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhcCC---cEEEEcCCHHHHHHHHc------CCCceEEecCCccchh
Q 024647 21 EELFKFITSKT--TNHELAWDVGTGSGQAAASLSGIFE---NVIGTETSPKQIEFATK------LPNIRYELTSPAMSIA 89 (265)
Q Consensus 21 ~~l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~------~~~~~~~~~~~~~~~~ 89 (265)
+.+...+.... +++.+|||+|||+|..+..+++... .|+++|+++.|++.|++ ..++.+.. +
T Consensus 66 p~l~a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~-------g 138 (322)
T PRK13943 66 PSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVC-------G 138 (322)
T ss_pred HHHHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEe-------C
Confidence 44555554433 4668999999999999999998764 49999999999998875 23566666 5
Q ss_pred hhhhccCCCCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEe
Q 024647 90 ELEQNVAAQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWC 137 (265)
Q Consensus 90 d~~~~~~~~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~ 137 (265)
|+.......++||+|++..+++. ....+.+.|+ |||.+++..
T Consensus 139 D~~~~~~~~~~fD~Ii~~~g~~~-----ip~~~~~~Lk-pgG~Lvv~~ 180 (322)
T PRK13943 139 DGYYGVPEFAPYDVIFVTVGVDE-----VPETWFTQLK-EGGRVIVPI 180 (322)
T ss_pred ChhhcccccCCccEEEECCchHH-----hHHHHHHhcC-CCCEEEEEe
Confidence 55544444468999999765443 3345788999 999988743
No 108
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=99.22 E-value=1.7e-10 Score=94.74 Aligned_cols=92 Identities=20% Similarity=0.292 Sum_probs=76.7
Q ss_pred CCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEecccccc
Q 024647 33 NHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHW 112 (265)
Q Consensus 33 ~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~ 112 (265)
...++||||+|.|..|..++..+.+|+++|.|+.|....++ .+.+.... .+ +.-.+.+||+|.|.+.+-.
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~Mr~rL~~-kg~~vl~~------~~---w~~~~~~fDvIscLNvLDR 163 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFKEVYATEASPPMRWRLSK-KGFTVLDI------DD---WQQTDFKFDVISCLNVLDR 163 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcceEEeecCCHHHHHHHHh-CCCeEEeh------hh---hhccCCceEEEeehhhhhc
Confidence 34679999999999999999999999999999999998876 35544431 22 3223468999999999877
Q ss_pred C-ChhHHHHHHHHHhcCCCcEEEE
Q 024647 113 F-DLPQFYNQVKWVLKKPNGVIAT 135 (265)
Q Consensus 113 ~-~~~~~l~~~~~~Lk~pgG~l~~ 135 (265)
. +|..+++++++.|+ |+|.+++
T Consensus 164 c~~P~~LL~~i~~~l~-p~G~lil 186 (265)
T PF05219_consen 164 CDRPLTLLRDIRRALK-PNGRLIL 186 (265)
T ss_pred cCCHHHHHHHHHHHhC-CCCEEEE
Confidence 7 78899999999999 9999876
No 109
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.22 E-value=1.7e-10 Score=98.60 Aligned_cols=113 Identities=27% Similarity=0.324 Sum_probs=79.3
Q ss_pred CCCCcHHHHHHHHhhC--CC-CCeEEEEcCCcchhHHHHHhcCC--cEEEEcCCHHHHHHHHcC------C-CceEEecC
Q 024647 16 RPNYPEELFKFITSKT--TN-HELAWDVGTGSGQAAASLSGIFE--NVIGTETSPKQIEFATKL------P-NIRYELTS 83 (265)
Q Consensus 16 rp~y~~~l~~~l~~~~--~~-~~~vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~------~-~~~~~~~~ 83 (265)
||. ++.+++.+.... .. ..+|||+|||+|.++..++..++ +|+|+|+|+.+++.|++. . ++.+..
T Consensus 95 r~e-te~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~-- 171 (284)
T TIGR00536 95 RPE-TEELVEKALASLISQNPILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQ-- 171 (284)
T ss_pred CCc-cHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEE--
Confidence 443 466666665433 22 26899999999999999998764 799999999999988752 1 266666
Q ss_pred CccchhhhhhccCCCCceeEEEeccc-------------cccC-------------ChhHHHHHHHHHhcCCCcEEEEEe
Q 024647 84 PAMSIAELEQNVAAQSTVDLVTIAQA-------------MHWF-------------DLPQFYNQVKWVLKKPNGVIATWC 137 (265)
Q Consensus 84 ~~~~~~d~~~~~~~~~~~Dlv~~~~~-------------~~~~-------------~~~~~l~~~~~~Lk~pgG~l~~~~ 137 (265)
+|+.+. ++..+||+|+++-. .++- ....+++++.+.|+ |||.+++..
T Consensus 172 -----~d~~~~-~~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~-~gG~l~~e~ 244 (284)
T TIGR00536 172 -----SNLFEP-LAGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLK-PNGFLVCEI 244 (284)
T ss_pred -----Cchhcc-CcCCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhcc-CCCEEEEEE
Confidence 454332 34448999999731 1111 12357888999999 999998755
Q ss_pred c
Q 024647 138 Y 138 (265)
Q Consensus 138 ~ 138 (265)
.
T Consensus 245 g 245 (284)
T TIGR00536 245 G 245 (284)
T ss_pred C
Confidence 4
No 110
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.21 E-value=5.9e-11 Score=93.75 Aligned_cols=94 Identities=11% Similarity=0.017 Sum_probs=70.6
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcC----CCceEEecCCccchhhhhhccCCCCceeEEEec
Q 024647 32 TNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKL----PNIRYELTSPAMSIAELEQNVAAQSTVDLVTIA 107 (265)
Q Consensus 32 ~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~----~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~ 107 (265)
.++.+|||+|||+|.++..++++..+++++|+++.|++.+++. .++.+.. +|+.+++.++..+|.|+++
T Consensus 12 ~~~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~-------~D~~~~~~~~~~~d~vi~n 84 (169)
T smart00650 12 RPGDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFAAADNLTVIH-------GDALKFDLPKLQPYKVVGN 84 (169)
T ss_pred CCcCEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhccCCCEEEEE-------CchhcCCccccCCCEEEEC
Confidence 3557899999999999999999988999999999999998753 3455555 7777777666679999998
Q ss_pred cccccCChhHHHHHHHHH--hcCCCcEEEE
Q 024647 108 QAMHWFDLPQFYNQVKWV--LKKPNGVIAT 135 (265)
Q Consensus 108 ~~~~~~~~~~~l~~~~~~--Lk~pgG~l~~ 135 (265)
...|.. ...+..+.+. +. ++|.+++
T Consensus 85 ~Py~~~--~~~i~~~l~~~~~~-~~~~l~~ 111 (169)
T smart00650 85 LPYNIS--TPILFKLLEEPPAF-RDAVLMV 111 (169)
T ss_pred CCcccH--HHHHHHHHhcCCCc-ceEEEEE
Confidence 777643 2333333322 44 5777766
No 111
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.20 E-value=4.6e-11 Score=100.37 Aligned_cols=110 Identities=16% Similarity=0.144 Sum_probs=82.9
Q ss_pred CCeEEEEcCCcchhHHHHHhcCC--cEEEEcCCHHHHHHHHcC------CCceEEecCCccchhhhhhccCCCCceeEEE
Q 024647 34 HELAWDVGTGSGQAAASLSGIFE--NVIGTETSPKQIEFATKL------PNIRYELTSPAMSIAELEQNVAAQSTVDLVT 105 (265)
Q Consensus 34 ~~~vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~ 105 (265)
..+|||+|||.|.++..+++..+ +++.+|+|...++.+++. .+..+.. .|... +..+ +||+|+
T Consensus 159 ~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~-------s~~~~-~v~~-kfd~Ii 229 (300)
T COG2813 159 GGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWA-------SNLYE-PVEG-KFDLII 229 (300)
T ss_pred CCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEE-------ecccc-cccc-cccEEE
Confidence 35899999999999999999987 799999999999999862 2222222 33222 2233 899999
Q ss_pred eccccccC-Ch-----hHHHHHHHHHhcCCCcEEEEEecCCCCCChHHHHhhcc
Q 024647 106 IAQAMHWF-DL-----PQFYNQVKWVLKKPNGVIATWCYTVPEVNVSVDAVFQP 153 (265)
Q Consensus 106 ~~~~~~~~-~~-----~~~l~~~~~~Lk~pgG~l~~~~~~~~~~~~~~~~~~~~ 153 (265)
|+-.+|-- +. .+++.++.+.|+ +||.|.++..+.......+.++|..
T Consensus 230 sNPPfh~G~~v~~~~~~~~i~~A~~~L~-~gGeL~iVan~~l~y~~~L~~~Fg~ 282 (300)
T COG2813 230 SNPPFHAGKAVVHSLAQEIIAAAARHLK-PGGELWIVANRHLPYEKKLKELFGN 282 (300)
T ss_pred eCCCccCCcchhHHHHHHHHHHHHHhhc-cCCEEEEEEcCCCChHHHHHHhcCC
Confidence 99999954 21 268999999999 9999988777655555666666653
No 112
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.20 E-value=3.4e-10 Score=88.73 Aligned_cols=98 Identities=17% Similarity=0.281 Sum_probs=77.3
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcC--CcEEEEcCCHHHHHHHHc------CCCceEEecCCccchhhhhhccCCCCceeE
Q 024647 32 TNHELAWDVGTGSGQAAASLSGIF--ENVIGTETSPKQIEFATK------LPNIRYELTSPAMSIAELEQNVAAQSTVDL 103 (265)
Q Consensus 32 ~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~------~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dl 103 (265)
.++++++|||||||..+..++..+ .+|+++|-++++++..++ .+|+..+. +++.+.-....++|.
T Consensus 33 ~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~-------g~Ap~~L~~~~~~da 105 (187)
T COG2242 33 RPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVE-------GDAPEALPDLPSPDA 105 (187)
T ss_pred CCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEe-------ccchHhhcCCCCCCE
Confidence 477899999999999999999554 479999999999998765 36777776 555444222227999
Q ss_pred EEeccccccCChhHHHHHHHHHhcCCCcEEEEEecCC
Q 024647 104 VTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCYTV 140 (265)
Q Consensus 104 v~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~~~ 140 (265)
|+.... -..+.+++.+...|+ |||.+++-....
T Consensus 106 iFIGGg---~~i~~ile~~~~~l~-~ggrlV~naitl 138 (187)
T COG2242 106 IFIGGG---GNIEEILEAAWERLK-PGGRLVANAITL 138 (187)
T ss_pred EEECCC---CCHHHHHHHHHHHcC-cCCeEEEEeecH
Confidence 999877 456789999999999 999999855543
No 113
>PRK03612 spermidine synthase; Provisional
Probab=99.19 E-value=2.2e-10 Score=105.67 Aligned_cols=112 Identities=18% Similarity=0.196 Sum_probs=80.5
Q ss_pred CcHHHHHHHHhhCCCCCeEEEEcCCcchhHHHHHhcC--CcEEEEcCCHHHHHHHHcC-------------CCceEEecC
Q 024647 19 YPEELFKFITSKTTNHELAWDVGTGSGQAAASLSGIF--ENVIGTETSPKQIEFATKL-------------PNIRYELTS 83 (265)
Q Consensus 19 y~~~l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~-------------~~~~~~~~~ 83 (265)
|.+.+..-.....+++++|||+|||+|..++.++++. .+|+++|+++++++.+++. ++++++.
T Consensus 283 y~e~l~~~~l~~~~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~-- 360 (521)
T PRK03612 283 YHEALVHPAMAASARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVN-- 360 (521)
T ss_pred HHHHHHHHHHhhCCCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEE--
Confidence 3444443222334567899999999999999998875 4799999999999999862 2344444
Q ss_pred Cccchhhhhhc-cCCCCceeEEEeccccccC-C-----hhHHHHHHHHHhcCCCcEEEEEec
Q 024647 84 PAMSIAELEQN-VAAQSTVDLVTIAQAMHWF-D-----LPQFYNQVKWVLKKPNGVIATWCY 138 (265)
Q Consensus 84 ~~~~~~d~~~~-~~~~~~~Dlv~~~~~~~~~-~-----~~~~l~~~~~~Lk~pgG~l~~~~~ 138 (265)
+|..+. ...+++||+|+++...++. . ...+++.+.+.|+ |||.+++...
T Consensus 361 -----~Da~~~l~~~~~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~-pgG~lv~~~~ 416 (521)
T PRK03612 361 -----DDAFNWLRKLAEKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLA-PDGLLVVQST 416 (521)
T ss_pred -----ChHHHHHHhCCCCCCEEEEeCCCCCCcchhccchHHHHHHHHHhcC-CCeEEEEecC
Confidence 555542 2234689999998654442 1 2358999999999 9999998653
No 114
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=99.19 E-value=8.4e-11 Score=101.94 Aligned_cols=104 Identities=19% Similarity=0.191 Sum_probs=70.5
Q ss_pred CCCeEEEEcCCcchhHHHHHhcC-CcEEEEcCCHHHHHHHHcC----------------CCceEEecCCccchhhhhh-c
Q 024647 33 NHELAWDVGTGSGQAAASLSGIF-ENVIGTETSPKQIEFATKL----------------PNIRYELTSPAMSIAELEQ-N 94 (265)
Q Consensus 33 ~~~~vlDvGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~----------------~~~~~~~~~~~~~~~d~~~-~ 94 (265)
++.+|||+|||.|.-...+.... ..++|+|++...+++|+++ -...+...+... ..+.. +
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~--~~l~~~~ 139 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFS--ESLREKL 139 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCC--SHHHCTS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheecccccc--chhhhhc
Confidence 67899999999988777776654 5799999999999998752 022334432211 11222 2
Q ss_pred cCCCCceeEEEeccccccC-Chh----HHHHHHHHHhcCCCcEEEEEecC
Q 024647 95 VAAQSTVDLVTIAQAMHWF-DLP----QFYNQVKWVLKKPNGVIATWCYT 139 (265)
Q Consensus 95 ~~~~~~~Dlv~~~~~~~~~-~~~----~~l~~~~~~Lk~pgG~l~~~~~~ 139 (265)
+.....||+|.|.+++|+. ..+ .++..+.+.|+ |||.|+..++.
T Consensus 140 ~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk-~GG~FIgT~~d 188 (331)
T PF03291_consen 140 PPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLK-PGGYFIGTTPD 188 (331)
T ss_dssp SSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEE-EEEEEEEEEE-
T ss_pred cccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcC-CCCEEEEEecC
Confidence 2223599999999999997 433 48999999999 99999987775
No 115
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.18 E-value=7.7e-11 Score=101.59 Aligned_cols=95 Identities=18% Similarity=0.165 Sum_probs=70.8
Q ss_pred CeEEEEcCCcchhHHHHHhcCC--cEEEEcCCHHHHHHHHcC-------CCceEEecCCccchhhhhhccCCCCceeEEE
Q 024647 35 ELAWDVGTGSGQAAASLSGIFE--NVIGTETSPKQIEFATKL-------PNIRYELTSPAMSIAELEQNVAAQSTVDLVT 105 (265)
Q Consensus 35 ~~vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~ 105 (265)
.+|||+|||+|.++..++..++ +|+++|+|+.+++.|++. .++.+.. +|+.+. +++++||+|+
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~-------~D~~~~-l~~~~fDlIv 206 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIE-------SDLFAA-LPGRRYDLIV 206 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEE-------Cchhhh-CCCCCccEEE
Confidence 6899999999999999998764 799999999999988752 2356666 554332 2456899999
Q ss_pred ecccc-------------cc-CC------------hhHHHHHHHHHhcCCCcEEEEEec
Q 024647 106 IAQAM-------------HW-FD------------LPQFYNQVKWVLKKPNGVIATWCY 138 (265)
Q Consensus 106 ~~~~~-------------~~-~~------------~~~~l~~~~~~Lk~pgG~l~~~~~ 138 (265)
++-.. ++ .. ...+++++.++|+ |||.+++...
T Consensus 207 sNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~-pgG~l~~E~g 264 (307)
T PRK11805 207 SNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLT-EDGVLVVEVG 264 (307)
T ss_pred ECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcC-CCCEEEEEEC
Confidence 97311 11 00 1367889999999 9999998543
No 116
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.18 E-value=2.9e-10 Score=96.78 Aligned_cols=109 Identities=20% Similarity=0.251 Sum_probs=78.5
Q ss_pred cHHHHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhcC--CcEEEEcCCHHHHHHHHcC------CCceEEecCCccchh
Q 024647 20 PEELFKFITSKT--TNHELAWDVGTGSGQAAASLSGIF--ENVIGTETSPKQIEFATKL------PNIRYELTSPAMSIA 89 (265)
Q Consensus 20 ~~~l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~ 89 (265)
.+.+++.+.... .++.+|||+|||+|..+..++... .+++|+|+|+.+++.+++. .++.+.. +
T Consensus 93 te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~-------~ 165 (275)
T PRK09328 93 TEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQ-------G 165 (275)
T ss_pred cHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEE-------c
Confidence 466677666432 356789999999999999999887 5799999999999988752 3455555 4
Q ss_pred hhhhccCCCCceeEEEeccccc------cC---------------------ChhHHHHHHHHHhcCCCcEEEEEe
Q 024647 90 ELEQNVAAQSTVDLVTIAQAMH------WF---------------------DLPQFYNQVKWVLKKPNGVIATWC 137 (265)
Q Consensus 90 d~~~~~~~~~~~Dlv~~~~~~~------~~---------------------~~~~~l~~~~~~Lk~pgG~l~~~~ 137 (265)
|+... .+.++||+|+++.... .+ ....+++++.++|+ |||.+++..
T Consensus 166 d~~~~-~~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk-~gG~l~~e~ 238 (275)
T PRK09328 166 DWFEP-LPGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLK-PGGWLLLEI 238 (275)
T ss_pred cccCc-CCCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcc-cCCEEEEEE
Confidence 44322 2357899999964221 00 02357788889999 999998844
No 117
>PHA03412 putative methyltransferase; Provisional
Probab=99.17 E-value=2.8e-10 Score=93.06 Aligned_cols=106 Identities=10% Similarity=0.125 Sum_probs=75.5
Q ss_pred cHHHHHHHHhhCCCCCeEEEEcCCcchhHHHHHhc-----CCcEEEEcCCHHHHHHHHcC-CCceEEecCCccchhhhhh
Q 024647 20 PEELFKFITSKTTNHELAWDVGTGSGQAAASLSGI-----FENVIGTETSPKQIEFATKL-PNIRYELTSPAMSIAELEQ 93 (265)
Q Consensus 20 ~~~l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~-----~~~v~~vD~s~~~~~~a~~~-~~~~~~~~~~~~~~~d~~~ 93 (265)
|..++..+......+.+|||+|||+|.++..++++ ..+|+++|+++.+++.|++. +++.+.. +|+..
T Consensus 36 P~~iAr~~~i~~~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~-------~D~~~ 108 (241)
T PHA03412 36 PIGLARDFTIDACTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWIN-------ADALT 108 (241)
T ss_pred CHHHHHHHHHhccCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEE-------cchhc
Confidence 55565555432334679999999999999998865 24799999999999999863 4566666 66655
Q ss_pred ccCCCCceeEEEeccccccC---C----------hhHHHHHHHHHhcCCCcEEEE
Q 024647 94 NVAAQSTVDLVTIAQAMHWF---D----------LPQFYNQVKWVLKKPNGVIAT 135 (265)
Q Consensus 94 ~~~~~~~~Dlv~~~~~~~~~---~----------~~~~l~~~~~~Lk~pgG~l~~ 135 (265)
..+ +++||+|+++-.++-. + ...++..+.++++ +|+ +++
T Consensus 109 ~~~-~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~-~G~-~IL 160 (241)
T PHA03412 109 TEF-DTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIAR-QGT-FII 160 (241)
T ss_pred ccc-cCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcC-CCE-EEe
Confidence 543 5689999998865522 1 2357888888666 555 443
No 118
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.17 E-value=3.2e-10 Score=96.28 Aligned_cols=100 Identities=17% Similarity=0.242 Sum_probs=73.6
Q ss_pred CCCCCeEEEEcCCcchhHHHHHhcC--CcEEEEcCCHHHHHHHHcC----------CCceEEecCCccchhhhhh-ccCC
Q 024647 31 TTNHELAWDVGTGSGQAAASLSGIF--ENVIGTETSPKQIEFATKL----------PNIRYELTSPAMSIAELEQ-NVAA 97 (265)
Q Consensus 31 ~~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~----------~~~~~~~~~~~~~~~d~~~-~~~~ 97 (265)
.+.+.+||++|||+|.+++.++++. .+++++|+++.+++.+++. +++++.. +|... +...
T Consensus 70 ~~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~-------~D~~~~l~~~ 142 (270)
T TIGR00417 70 HPNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQI-------DDGFKFLADT 142 (270)
T ss_pred CCCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEE-------CchHHHHHhC
Confidence 3455699999999999999998775 4799999999999988862 2233333 44322 2223
Q ss_pred CCceeEEEeccccccCC-----hhHHHHHHHHHhcCCCcEEEEEec
Q 024647 98 QSTVDLVTIAQAMHWFD-----LPQFYNQVKWVLKKPNGVIATWCY 138 (265)
Q Consensus 98 ~~~~Dlv~~~~~~~~~~-----~~~~l~~~~~~Lk~pgG~l~~~~~ 138 (265)
.++||+|++....+... ...+++.+.+.|+ |||++++...
T Consensus 143 ~~~yDvIi~D~~~~~~~~~~l~~~ef~~~~~~~L~-pgG~lv~~~~ 187 (270)
T TIGR00417 143 ENTFDVIIVDSTDPVGPAETLFTKEFYELLKKALN-EDGIFVAQSE 187 (270)
T ss_pred CCCccEEEEeCCCCCCcccchhHHHHHHHHHHHhC-CCcEEEEcCC
Confidence 56899999976544321 3578899999999 9999998643
No 119
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=99.17 E-value=2.1e-10 Score=96.17 Aligned_cols=130 Identities=20% Similarity=0.193 Sum_probs=90.3
Q ss_pred HHHHHHhhh-----------CCCCcHHHHHHHHh-----hCCCCCeEEEEcCCcchhHHHHHhcC-CcEEEEcCCHHHHH
Q 024647 7 KQAKQYAET-----------RPNYPEELFKFITS-----KTTNHELAWDVGTGSGQAAASLSGIF-ENVIGTETSPKQIE 69 (265)
Q Consensus 7 ~~a~~Y~~~-----------rp~y~~~l~~~l~~-----~~~~~~~vlDvGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~ 69 (265)
..|.+|++- +--+-..+-+||.+ +.++.+.++|+|||.|.-.+.+-+.+ ..++|+||++.-++
T Consensus 75 ~Va~HYN~~~e~g~e~Rq~S~Ii~lRnfNNwIKs~LI~~y~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~ 154 (389)
T KOG1975|consen 75 EVAEHYNERTEVGREKRQRSPIIFLRNFNNWIKSVLINLYTKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSIN 154 (389)
T ss_pred HHHHHHHHHHHHhHhhhccCceeehhhhhHHHHHHHHHHHhccccccceeccCCcccHhHhhhhcccceEeeehhhccHH
Confidence 467778761 11223344555544 34677889999999998888877665 57999999999999
Q ss_pred HHHcC--------C----CceEEecCCccchhhhhh-ccCCCCceeEEEeccccccC-Ch-h---HHHHHHHHHhcCCCc
Q 024647 70 FATKL--------P----NIRYELTSPAMSIAELEQ-NVAAQSTVDLVTIAQAMHWF-DL-P---QFYNQVKWVLKKPNG 131 (265)
Q Consensus 70 ~a~~~--------~----~~~~~~~~~~~~~~d~~~-~~~~~~~~Dlv~~~~~~~~~-~~-~---~~l~~~~~~Lk~pgG 131 (265)
+|+++ . .+.|..++... ..+.+ ++.++.+||+|-|.+++|+. .. + .++.++.+.|+ |||
T Consensus 155 qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~--~~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~Lk-pGG 231 (389)
T KOG1975|consen 155 QARKRYRDMKNRFKKFIFTAVFIAADCFK--ERLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLK-PGG 231 (389)
T ss_pred HHHHHHHHHHhhhhcccceeEEEEeccch--hHHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcC-CCc
Confidence 99862 1 24555543321 12222 33345559999999999986 32 2 48999999999 999
Q ss_pred EEEEEecC
Q 024647 132 VIATWCYT 139 (265)
Q Consensus 132 ~l~~~~~~ 139 (265)
.++...+.
T Consensus 232 ~FIgTiPd 239 (389)
T KOG1975|consen 232 VFIGTIPD 239 (389)
T ss_pred EEEEecCc
Confidence 99987665
No 120
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=99.16 E-value=1.2e-10 Score=93.50 Aligned_cols=95 Identities=31% Similarity=0.425 Sum_probs=68.9
Q ss_pred CCCeEEEEcCCcchhHHHH-HhcCCcEEEEcCCHHHHHHHHc-C----CC-ceEEecCCccchhhhhhccCCCCceeEEE
Q 024647 33 NHELAWDVGTGSGQAAASL-SGIFENVIGTETSPKQIEFATK-L----PN-IRYELTSPAMSIAELEQNVAAQSTVDLVT 105 (265)
Q Consensus 33 ~~~~vlDvGcG~G~~~~~l-~~~~~~v~~vD~s~~~~~~a~~-~----~~-~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~ 105 (265)
...+.||.|||.|..|..+ .+.+.+|..||+++..++.|++ + .. .++.+ ..++++..+.+.||+|+
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~-------~gLQ~f~P~~~~YDlIW 127 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYC-------VGLQDFTPEEGKYDLIW 127 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEE-------S-GGG----TT-EEEEE
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCCCcceEEe-------cCHhhccCCCCcEeEEE
Confidence 3468999999999999976 5677889999999999999984 1 12 33344 34566654557999999
Q ss_pred eccccccC-C--hhHHHHHHHHHhcCCCcEEEE
Q 024647 106 IAQAMHWF-D--LPQFYNQVKWVLKKPNGVIAT 135 (265)
Q Consensus 106 ~~~~~~~~-~--~~~~l~~~~~~Lk~pgG~l~~ 135 (265)
+.+++-++ | ...+|++|...|+ |||.+++
T Consensus 128 ~QW~lghLTD~dlv~fL~RCk~~L~-~~G~Ivv 159 (218)
T PF05891_consen 128 IQWCLGHLTDEDLVAFLKRCKQALK-PNGVIVV 159 (218)
T ss_dssp EES-GGGS-HHHHHHHHHHHHHHEE-EEEEEEE
T ss_pred ehHhhccCCHHHHHHHHHHHHHhCc-CCcEEEE
Confidence 99999888 4 5589999999999 9999998
No 121
>PLN02366 spermidine synthase
Probab=99.16 E-value=4e-10 Score=96.90 Aligned_cols=99 Identities=20% Similarity=0.269 Sum_probs=74.9
Q ss_pred CCCCCeEEEEcCCcchhHHHHHhcC--CcEEEEcCCHHHHHHHHcC----------CCceEEecCCccchhhhhhc-c-C
Q 024647 31 TTNHELAWDVGTGSGQAAASLSGIF--ENVIGTETSPKQIEFATKL----------PNIRYELTSPAMSIAELEQN-V-A 96 (265)
Q Consensus 31 ~~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~----------~~~~~~~~~~~~~~~d~~~~-~-~ 96 (265)
.+.+.+||+||||.|.+.+.++++. .+|+.||+++.+++.+++. ++++++. +|+... . .
T Consensus 89 ~~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~-------~Da~~~l~~~ 161 (308)
T PLN02366 89 IPNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHI-------GDGVEFLKNA 161 (308)
T ss_pred CCCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEE-------ChHHHHHhhc
Confidence 4667899999999999999999874 4799999999999999872 2344444 554332 1 2
Q ss_pred CCCceeEEEeccccccCC-----hhHHHHHHHHHhcCCCcEEEEEe
Q 024647 97 AQSTVDLVTIAQAMHWFD-----LPQFYNQVKWVLKKPNGVIATWC 137 (265)
Q Consensus 97 ~~~~~Dlv~~~~~~~~~~-----~~~~l~~~~~~Lk~pgG~l~~~~ 137 (265)
++++||+|++...-++.. ...+++.+.+.|+ |||+++...
T Consensus 162 ~~~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~-pgGvlv~q~ 206 (308)
T PLN02366 162 PEGTYDAIIVDSSDPVGPAQELFEKPFFESVARALR-PGGVVCTQA 206 (308)
T ss_pred cCCCCCEEEEcCCCCCCchhhhhHHHHHHHHHHhcC-CCcEEEECc
Confidence 356899999976554432 2368999999999 999998743
No 122
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.16 E-value=4.8e-10 Score=94.08 Aligned_cols=111 Identities=15% Similarity=0.181 Sum_probs=76.4
Q ss_pred cHHHHHHHHhhCC---CCCeEEEEcCCcchhHHHHHhcCC--cEEEEcCCHHHHHHHHcC---CCceEEecCCccchhhh
Q 024647 20 PEELFKFITSKTT---NHELAWDVGTGSGQAAASLSGIFE--NVIGTETSPKQIEFATKL---PNIRYELTSPAMSIAEL 91 (265)
Q Consensus 20 ~~~l~~~l~~~~~---~~~~vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~---~~~~~~~~~~~~~~~d~ 91 (265)
++.+++.+..... .+.+|||+|||+|.++..+++..+ +|+++|+|+.+++.+++. .+.++.. +|+
T Consensus 70 Te~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~~~~~-------~D~ 142 (251)
T TIGR03704 70 TEFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGGTVHE-------GDL 142 (251)
T ss_pred HHHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCEEEE-------eec
Confidence 4556665554332 235799999999999999987654 799999999999988752 2345555 444
Q ss_pred hhc-cC-CCCceeEEEeccccc------cC-------C--------------hhHHHHHHHHHhcCCCcEEEEEec
Q 024647 92 EQN-VA-AQSTVDLVTIAQAMH------WF-------D--------------LPQFYNQVKWVLKKPNGVIATWCY 138 (265)
Q Consensus 92 ~~~-~~-~~~~~Dlv~~~~~~~------~~-------~--------------~~~~l~~~~~~Lk~pgG~l~~~~~ 138 (265)
.+. +. ..++||+|+++-... .. + ...++..+.++|+ |||.+++...
T Consensus 143 ~~~l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~-~gG~l~l~~~ 217 (251)
T TIGR03704 143 YDALPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLA-PGGHLLVETS 217 (251)
T ss_pred hhhcchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcC-CCCEEEEEEC
Confidence 332 10 135799999986321 01 0 1367778889999 9999997654
No 123
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=99.15 E-value=1.8e-10 Score=92.94 Aligned_cols=113 Identities=19% Similarity=0.397 Sum_probs=79.3
Q ss_pred cHHHHHHHHhhCCCCCeEEEEcCCcchhHHHHHhcCC--cEEEEcCCHHHHHHHHcC-----------C-----------
Q 024647 20 PEELFKFITSKTTNHELAWDVGTGSGQAAASLSGIFE--NVIGTETSPKQIEFATKL-----------P----------- 75 (265)
Q Consensus 20 ~~~l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~-----------~----------- 75 (265)
++..+..|....-.+..+|||||-.|.+|..+++.+. .|+|+||++..+..|++. .
T Consensus 45 ~D~rLk~L~~~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~ 124 (288)
T KOG2899|consen 45 SDPRLKVLEKDWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQF 124 (288)
T ss_pred CChhhhhccccccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccc
Confidence 4444545533334567799999999999999999875 499999999999999851 1
Q ss_pred -------------------CceEEecCCccchhhhhhccCCCCceeEEEeccccccC--C-----hhHHHHHHHHHhcCC
Q 024647 76 -------------------NIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWF--D-----LPQFYNQVKWVLKKP 129 (265)
Q Consensus 76 -------------------~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~--~-----~~~~l~~~~~~Lk~p 129 (265)
|+.|...+......|+- ......||+|+|-..-.|+ + ...++..+.++|. |
T Consensus 125 ~~is~~~~a~~a~t~~~p~n~~f~~~n~vle~~dfl--~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~-p 201 (288)
T KOG2899|consen 125 GPISQRNEADRAFTTDFPDNVWFQKENYVLESDDFL--DMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLH-P 201 (288)
T ss_pred ccccccccccccccccCCcchhcccccEEEecchhh--hhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhC-c
Confidence 22222222222222222 2345689999998765555 2 3479999999999 9
Q ss_pred CcEEEE
Q 024647 130 NGVIAT 135 (265)
Q Consensus 130 gG~l~~ 135 (265)
||+|++
T Consensus 202 gGiLvv 207 (288)
T KOG2899|consen 202 GGILVV 207 (288)
T ss_pred CcEEEE
Confidence 999998
No 124
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.14 E-value=2e-10 Score=94.07 Aligned_cols=124 Identities=19% Similarity=0.226 Sum_probs=84.5
Q ss_pred HHHHhhhCCCCcHHHHHHHHhhC-CCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcCCCc-------e--
Q 024647 9 AKQYAETRPNYPEELFKFITSKT-TNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKLPNI-------R-- 78 (265)
Q Consensus 9 a~~Y~~~rp~y~~~l~~~l~~~~-~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~-------~-- 78 (265)
...++...| .+.+.+++.... +++.+||..|||.|.-...|++++.+|+|+|+|+..++.+.+..+. .
T Consensus 14 ~~~w~~~~~--~p~L~~~~~~l~~~~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~ 91 (218)
T PF05724_consen 14 QTPWDQGEP--NPALVEYLDSLALKPGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGF 91 (218)
T ss_dssp --TT--TTS--THHHHHHHHHHTTSTSEEEEETTTTTSCHHHHHHHTTEEEEEEES-HHHHHHHHHHCTTEEECTTCTTE
T ss_pred CCCCCCCCC--CHHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHHCCCeEEEEecCHHHHHHHHHHhccCCCcccccce
Confidence 334555555 467888877633 4556899999999999999999999999999999999987321110 0
Q ss_pred --EEecCCccchhhhhhccCCC-CceeEEEeccccccCC---hhHHHHHHHHHhcCCCcEEEE
Q 024647 79 --YELTSPAMSIAELEQNVAAQ-STVDLVTIAQAMHWFD---LPQFYNQVKWVLKKPNGVIAT 135 (265)
Q Consensus 79 --~~~~~~~~~~~d~~~~~~~~-~~~Dlv~~~~~~~~~~---~~~~l~~~~~~Lk~pgG~l~~ 135 (265)
.....+++..+|+-.++... ++||+|+-..+++-++ +.+..+.+.++|+ |||.+++
T Consensus 92 ~~~~~~~i~~~~gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~-p~g~~lL 153 (218)
T PF05724_consen 92 KRYQAGRITIYCGDFFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLK-PGGRGLL 153 (218)
T ss_dssp EEETTSSEEEEES-TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEE-EEEEEEE
T ss_pred eeecCCceEEEEcccccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhC-CCCcEEE
Confidence 01112233336776654332 4799999888777774 4579999999999 9999433
No 125
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.12 E-value=2e-10 Score=105.41 Aligned_cols=95 Identities=28% Similarity=0.269 Sum_probs=68.4
Q ss_pred CCeEEEEcCCcchhHHHHHhcC--CcEEEEcCCHHHHHHHHcC-------CCceEEecCCccchhhhhhccCCCCceeEE
Q 024647 34 HELAWDVGTGSGQAAASLSGIF--ENVIGTETSPKQIEFATKL-------PNIRYELTSPAMSIAELEQNVAAQSTVDLV 104 (265)
Q Consensus 34 ~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv 104 (265)
+.+|||+|||+|.++..++... .+|+++|+|+.+++.|++. .++.+.. +|+... .+.++||+|
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~-------~D~~~~-~~~~~fDlI 210 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIH-------SNWFEN-IEKQKFDFI 210 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeee-------cchhhh-CcCCCccEE
Confidence 4589999999999999998765 4799999999999998852 1344555 454322 345689999
Q ss_pred Eecccccc--------------------C-C------hhHHHHHHHHHhcCCCcEEEEEe
Q 024647 105 TIAQAMHW--------------------F-D------LPQFYNQVKWVLKKPNGVIATWC 137 (265)
Q Consensus 105 ~~~~~~~~--------------------~-~------~~~~l~~~~~~Lk~pgG~l~~~~ 137 (265)
+++-.... + . ...+++++.++|+ |||.+++..
T Consensus 211 vsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~-~gG~l~lEi 269 (506)
T PRK01544 211 VSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLK-PNGKIILEI 269 (506)
T ss_pred EECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhcc-CCCEEEEEE
Confidence 99652111 1 0 1246778889999 999998743
No 126
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=99.12 E-value=2.6e-10 Score=91.92 Aligned_cols=100 Identities=26% Similarity=0.343 Sum_probs=74.5
Q ss_pred CeEEEEcCCcchhHHHHHhcCC--cEEEEcCCHHHHHHHHc------CCCceEEecCCccchhhhhhccCCCCceeEEEe
Q 024647 35 ELAWDVGTGSGQAAASLSGIFE--NVIGTETSPKQIEFATK------LPNIRYELTSPAMSIAELEQNVAAQSTVDLVTI 106 (265)
Q Consensus 35 ~~vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~------~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~ 106 (265)
..+||||||.|.+...+|...+ .++|+|++...+..+.+ ++|+.++.+++... +..+ ++++++|.|+.
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~---l~~~-~~~~~v~~i~i 94 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDAREL---LRRL-FPPGSVDRIYI 94 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTH---HHHH-STTTSEEEEEE
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHH---Hhhc-ccCCchheEEE
Confidence 4899999999999999999887 49999999999987653 58999999776322 2223 46789999999
Q ss_pred ccccccCC---------hhHHHHHHHHHhcCCCcEEEEEecC
Q 024647 107 AQAMHWFD---------LPQFYNQVKWVLKKPNGVIATWCYT 139 (265)
Q Consensus 107 ~~~~~~~~---------~~~~l~~~~~~Lk~pgG~l~~~~~~ 139 (265)
++.-.|.. ...+++.+.++|+ |||.|.+.+-.
T Consensus 95 ~FPDPWpK~rH~krRl~~~~fl~~~~~~L~-~gG~l~~~TD~ 135 (195)
T PF02390_consen 95 NFPDPWPKKRHHKRRLVNPEFLELLARVLK-PGGELYFATDV 135 (195)
T ss_dssp ES-----SGGGGGGSTTSHHHHHHHHHHEE-EEEEEEEEES-
T ss_pred eCCCCCcccchhhhhcCCchHHHHHHHHcC-CCCEEEEEeCC
Confidence 99888873 2379999999999 99999886644
No 127
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=8.8e-10 Score=88.25 Aligned_cols=94 Identities=20% Similarity=0.221 Sum_probs=73.3
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHc------CCCceEEecCCccchhhhhhccCCCCceeEEE
Q 024647 32 TNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATK------LPNIRYELTSPAMSIAELEQNVAAQSTVDLVT 105 (265)
Q Consensus 32 ~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~------~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~ 105 (265)
.++++|||||||+|..+.-|++...+|+.+|..+...+.|++ +.|+...+ +|...-..+..+||.|+
T Consensus 71 ~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~-------gDG~~G~~~~aPyD~I~ 143 (209)
T COG2518 71 KPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGYENVTVRH-------GDGSKGWPEEAPYDRII 143 (209)
T ss_pred CCCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHHcCCCceEEEE-------CCcccCCCCCCCcCEEE
Confidence 577899999999999999999999999999999999999986 35777777 55444333558999999
Q ss_pred eccccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647 106 IAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCY 138 (265)
Q Consensus 106 ~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~ 138 (265)
+..+...+ | +.+.+-|+ +||++++-..
T Consensus 144 Vtaaa~~v-P----~~Ll~QL~-~gGrlv~PvG 170 (209)
T COG2518 144 VTAAAPEV-P----EALLDQLK-PGGRLVIPVG 170 (209)
T ss_pred EeeccCCC-C----HHHHHhcc-cCCEEEEEEc
Confidence 87664432 2 23455689 9999987443
No 128
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.10 E-value=3.4e-10 Score=91.97 Aligned_cols=104 Identities=19% Similarity=0.287 Sum_probs=72.7
Q ss_pred HHHHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhcCC---cEEEEcCCHHHHHHHHc------CCCceEEecCCccchh
Q 024647 21 EELFKFITSKT--TNHELAWDVGTGSGQAAASLSGIFE---NVIGTETSPKQIEFATK------LPNIRYELTSPAMSIA 89 (265)
Q Consensus 21 ~~l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~------~~~~~~~~~~~~~~~~ 89 (265)
+.+...+...+ +++++|||||||+|..+..++.... .|+++|+.+..++.|++ ..|+.+.. +
T Consensus 58 P~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~-------g 130 (209)
T PF01135_consen 58 PSMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVV-------G 130 (209)
T ss_dssp HHHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEE-------S
T ss_pred HHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEE-------c
Confidence 34444444443 6789999999999999999998743 58999999999998875 35788888 4
Q ss_pred hhhhccCCCCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEe
Q 024647 90 ELEQNVAAQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWC 137 (265)
Q Consensus 90 d~~~~~~~~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~ 137 (265)
|...-.....+||.|++..+.. ..-..+.+.|+ +||++++-.
T Consensus 131 dg~~g~~~~apfD~I~v~~a~~-----~ip~~l~~qL~-~gGrLV~pi 172 (209)
T PF01135_consen 131 DGSEGWPEEAPFDRIIVTAAVP-----EIPEALLEQLK-PGGRLVAPI 172 (209)
T ss_dssp -GGGTTGGG-SEEEEEESSBBS-----S--HHHHHTEE-EEEEEEEEE
T ss_pred chhhccccCCCcCEEEEeeccc-----hHHHHHHHhcC-CCcEEEEEE
Confidence 4433323556899999987654 22345677799 999999744
No 129
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.10 E-value=2.7e-10 Score=102.80 Aligned_cols=100 Identities=13% Similarity=0.218 Sum_probs=73.8
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcCC--cEEEEcCCHHHHHHHHcC-----CCceEEecCCccchhhhhhcc--CCCCcee
Q 024647 32 TNHELAWDVGTGSGQAAASLSGIFE--NVIGTETSPKQIEFATKL-----PNIRYELTSPAMSIAELEQNV--AAQSTVD 102 (265)
Q Consensus 32 ~~~~~vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~~~~~d~~~~~--~~~~~~D 102 (265)
.++.+|||+|||+|..+..+++... +|+++|+|+.+++.+++. .++.+.. +|+...+ .+.++||
T Consensus 243 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~-------~D~~~~~~~~~~~~fD 315 (427)
T PRK10901 243 QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIV-------GDARDPAQWWDGQPFD 315 (427)
T ss_pred CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEE-------cCcccchhhcccCCCC
Confidence 4678999999999999999998764 799999999999988752 1244555 5554432 2356899
Q ss_pred EEEeccc------------cccC-Ch----------hHHHHHHHHHhcCCCcEEEEEecC
Q 024647 103 LVTIAQA------------MHWF-DL----------PQFYNQVKWVLKKPNGVIATWCYT 139 (265)
Q Consensus 103 lv~~~~~------------~~~~-~~----------~~~l~~~~~~Lk~pgG~l~~~~~~ 139 (265)
.|+++-. ++|. .+ .+++..+.++|+ |||.+++.+..
T Consensus 316 ~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~Lk-pGG~lvystcs 374 (427)
T PRK10901 316 RILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLK-PGGTLLYATCS 374 (427)
T ss_pred EEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcC-CCCEEEEEeCC
Confidence 9996441 1233 21 258999999999 99999987653
No 130
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.10 E-value=2.2e-09 Score=86.66 Aligned_cols=117 Identities=13% Similarity=-0.021 Sum_probs=77.7
Q ss_pred hCCCCcHHHHHHHHhhC---CCCCeEEEEcCCcchhHHHHHhc-CCcEEEEcCCHHHHHHHHcC------CCceEEecCC
Q 024647 15 TRPNYPEELFKFITSKT---TNHELAWDVGTGSGQAAASLSGI-FENVIGTETSPKQIEFATKL------PNIRYELTSP 84 (265)
Q Consensus 15 ~rp~y~~~l~~~l~~~~---~~~~~vlDvGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~ 84 (265)
.||. .+.+.+.+.+.. .++.+|||+|||+|.++..++.+ ..+|+++|+++.+++.+++. .++.+..
T Consensus 33 ~Rp~-~d~v~e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~--- 108 (199)
T PRK10909 33 LRPT-TDRVRETLFNWLAPVIVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGNARVVN--- 108 (199)
T ss_pred cCcC-CHHHHHHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEE---
Confidence 4776 566544444432 34578999999999999975544 45899999999999987752 3455555
Q ss_pred ccchhhhhhc-cCCCCceeEEEeccccccCChhHHHHHHHH--HhcCCCcEEEEEecCC
Q 024647 85 AMSIAELEQN-VAAQSTVDLVTIAQAMHWFDLPQFYNQVKW--VLKKPNGVIATWCYTV 140 (265)
Q Consensus 85 ~~~~~d~~~~-~~~~~~~Dlv~~~~~~~~~~~~~~l~~~~~--~Lk~pgG~l~~~~~~~ 140 (265)
+|+... +...++||+|+++-..+.--...+++.+.. .|+ |+|.+++.+...
T Consensus 109 ----~D~~~~l~~~~~~fDlV~~DPPy~~g~~~~~l~~l~~~~~l~-~~~iv~ve~~~~ 162 (199)
T PRK10909 109 ----TNALSFLAQPGTPHNVVFVDPPFRKGLLEETINLLEDNGWLA-DEALIYVESEVE 162 (199)
T ss_pred ----chHHHHHhhcCCCceEEEECCCCCCChHHHHHHHHHHCCCcC-CCcEEEEEecCC
Confidence 555442 222457999999876443222344554444 368 899888876653
No 131
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=99.09 E-value=4.4e-10 Score=90.82 Aligned_cols=104 Identities=20% Similarity=0.269 Sum_probs=77.5
Q ss_pred CeEEEEcCCcchhHHHHHhcCCc----EEEEcCCHHHHHHHHcCCC-----ceEEecCCccchhhhhhccCCCCceeEEE
Q 024647 35 ELAWDVGTGSGQAAASLSGIFEN----VIGTETSPKQIEFATKLPN-----IRYELTSPAMSIAELEQNVAAQSTVDLVT 105 (265)
Q Consensus 35 ~~vlDvGcG~G~~~~~l~~~~~~----v~~vD~s~~~~~~a~~~~~-----~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~ 105 (265)
.+|||||||.|.....+.+-.++ |.++|.||..++..++... +.....+. ..+-..-+...+++|.|+
T Consensus 73 ~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dl---t~~~~~~~~~~~svD~it 149 (264)
T KOG2361|consen 73 ETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDL---TSPSLKEPPEEGSVDIIT 149 (264)
T ss_pred hhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceec---cchhccCCCCcCccceEE
Confidence 37999999999999999987654 9999999999999886321 11111111 011112345678999999
Q ss_pred eccccccCChh---HHHHHHHHHhcCCCcEEEEEecCCCC
Q 024647 106 IAQAMHWFDLP---QFYNQVKWVLKKPNGVIATWCYTVPE 142 (265)
Q Consensus 106 ~~~~~~~~~~~---~~l~~~~~~Lk~pgG~l~~~~~~~~~ 142 (265)
+.+++.-+.++ .+++++.++|| |||.+++-+|+...
T Consensus 150 ~IFvLSAi~pek~~~a~~nl~~llK-PGG~llfrDYg~~D 188 (264)
T KOG2361|consen 150 LIFVLSAIHPEKMQSVIKNLRTLLK-PGGSLLFRDYGRYD 188 (264)
T ss_pred EEEEEeccChHHHHHHHHHHHHHhC-CCcEEEEeecccch
Confidence 99988777554 69999999999 99999998887543
No 132
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.08 E-value=6.5e-10 Score=86.05 Aligned_cols=123 Identities=20% Similarity=0.325 Sum_probs=84.0
Q ss_pred HHHHHHHHhhCC------CCCeEEEEcCCcchhHHHHHhcCC--cEEEEcCCHHHHHHHHc------CCC-ceEEecCCc
Q 024647 21 EELFKFITSKTT------NHELAWDVGTGSGQAAASLSGIFE--NVIGTETSPKQIEFATK------LPN-IRYELTSPA 85 (265)
Q Consensus 21 ~~l~~~l~~~~~------~~~~vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~------~~~-~~~~~~~~~ 85 (265)
..+++|+..... ...+|||+|||.|.+...|++.+- +++|||.|+..++.|+. .+| ++|.+
T Consensus 49 ~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q---- 124 (227)
T KOG1271|consen 49 ERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQ---- 124 (227)
T ss_pred HHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEE----
Confidence 456677665432 234899999999999999998753 49999999999998764 244 88888
Q ss_pred cchhhhhhccCCCCceeEEEeccccccC----C-----hhHHHHHHHHHhcCCCcEEEEEecCCCCCChHHHHhhcc
Q 024647 86 MSIAELEQNVAAQSTVDLVTIAQAMHWF----D-----LPQFYNQVKWVLKKPNGVIATWCYTVPEVNVSVDAVFQP 153 (265)
Q Consensus 86 ~~~~d~~~~~~~~~~~Dlv~~~~~~~~~----~-----~~~~l~~~~~~Lk~pgG~l~~~~~~~~~~~~~~~~~~~~ 153 (265)
.|+-+-....+.||+|.--..+.-+ | +...+..+.++|+ |||+|+|...+-. ..++.+.+..
T Consensus 125 ---~DI~~~~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~-~~gifvItSCN~T--~dELv~~f~~ 195 (227)
T KOG1271|consen 125 ---LDITDPDFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLS-PGGIFVITSCNFT--KDELVEEFEN 195 (227)
T ss_pred ---eeccCCcccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccC-CCcEEEEEecCcc--HHHHHHHHhc
Confidence 4544433455678888765433221 1 2346888999999 9999998655422 2444444443
No 133
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.08 E-value=9.2e-10 Score=99.58 Aligned_cols=100 Identities=14% Similarity=0.257 Sum_probs=74.7
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcC---CcEEEEcCCHHHHHHHHcC------CCceEEecCCccchhhhhhcc----CCC
Q 024647 32 TNHELAWDVGTGSGQAAASLSGIF---ENVIGTETSPKQIEFATKL------PNIRYELTSPAMSIAELEQNV----AAQ 98 (265)
Q Consensus 32 ~~~~~vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~d~~~~~----~~~ 98 (265)
.++.+|||+|||+|..|..+++.. .+|+++|+++.+++.+++. .++.+.. +|+..++ ...
T Consensus 251 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~-------~D~~~~~~~~~~~~ 323 (434)
T PRK14901 251 QPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILA-------ADSRNLLELKPQWR 323 (434)
T ss_pred CCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEe-------CChhhccccccccc
Confidence 456899999999999999998864 4799999999999988652 3566666 5555543 335
Q ss_pred CceeEEEecc------ccc------cC-C----------hhHHHHHHHHHhcCCCcEEEEEecC
Q 024647 99 STVDLVTIAQ------AMH------WF-D----------LPQFYNQVKWVLKKPNGVIATWCYT 139 (265)
Q Consensus 99 ~~~Dlv~~~~------~~~------~~-~----------~~~~l~~~~~~Lk~pgG~l~~~~~~ 139 (265)
++||.|++.- .++ |. . ...++.++.++|| |||+|+..+..
T Consensus 324 ~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk-pgG~lvystcs 386 (434)
T PRK14901 324 GYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLK-PGGTLVYATCT 386 (434)
T ss_pred ccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcC-CCCEEEEEeCC
Confidence 6899999742 222 21 1 2467999999999 99999877654
No 134
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=99.06 E-value=2.5e-09 Score=87.73 Aligned_cols=127 Identities=19% Similarity=0.242 Sum_probs=91.6
Q ss_pred HHHHHhhhCCCCcHHHHHH---HHhhCC-C-CCeEEEEcCCcchhHHHHHhcCCc--EEEEcCCHHHHHHHHc------C
Q 024647 8 QAKQYAETRPNYPEELFKF---ITSKTT-N-HELAWDVGTGSGQAAASLSGIFEN--VIGTETSPKQIEFATK------L 74 (265)
Q Consensus 8 ~a~~Y~~~rp~y~~~l~~~---l~~~~~-~-~~~vlDvGcG~G~~~~~l~~~~~~--v~~vD~s~~~~~~a~~------~ 74 (265)
+...++..-|.|+...... ..+... + ...+||||||.|.+...+|++.++ ++|||+....+..+.+ +
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l 97 (227)
T COG0220 18 QKNALEDNWPRLGLDPQEEPGDWSALFGNNNAPIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGL 97 (227)
T ss_pred HHHHHHhcccccCCChhhccchHHHHhCCCCCcEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCC
Confidence 4445555555554443322 222222 2 257999999999999999999884 9999999999887653 3
Q ss_pred CCceEEecCCccchhhhhhccCCCCceeEEEeccccccC-Ch--------hHHHHHHHHHhcCCCcEEEEEecC
Q 024647 75 PNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWF-DL--------PQFYNQVKWVLKKPNGVIATWCYT 139 (265)
Q Consensus 75 ~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~-~~--------~~~l~~~~~~Lk~pgG~l~~~~~~ 139 (265)
+|+...+.++ ..+.+.-.++++.|-|..++.-.|. .. +.+++.+.++|+ |||.|.+.+-.
T Consensus 98 ~Nlri~~~DA----~~~l~~~~~~~sl~~I~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk-~gG~l~~aTD~ 166 (227)
T COG0220 98 KNLRLLCGDA----VEVLDYLIPDGSLDKIYINFPDPWPKKRHHKRRLTQPEFLKLYARKLK-PGGVLHFATDN 166 (227)
T ss_pred CcEEEEcCCH----HHHHHhcCCCCCeeEEEEECCCCCCCccccccccCCHHHHHHHHHHcc-CCCEEEEEecC
Confidence 4888888665 3333333566799999999988888 32 479999999999 99999986544
No 135
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.05 E-value=2.3e-09 Score=90.70 Aligned_cols=100 Identities=16% Similarity=0.222 Sum_probs=73.3
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcC---CcEEEEcCCHHHHHHHHcC------CCceEEecCCccchhhhhhccCCCCcee
Q 024647 32 TNHELAWDVGTGSGQAAASLSGIF---ENVIGTETSPKQIEFATKL------PNIRYELTSPAMSIAELEQNVAAQSTVD 102 (265)
Q Consensus 32 ~~~~~vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~d~~~~~~~~~~~D 102 (265)
.++.+|||+|||+|..+..+++.. ..|+++|+++.+++.+++. .++.+.. .|...++...++||
T Consensus 70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~-------~D~~~~~~~~~~fD 142 (264)
T TIGR00446 70 DPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTN-------FDGRVFGAAVPKFD 142 (264)
T ss_pred CCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEec-------CCHHHhhhhccCCC
Confidence 466889999999999999998864 4699999999999988652 3455554 55555544456799
Q ss_pred EEEeccc------c--------ccCC---------hhHHHHHHHHHhcCCCcEEEEEecC
Q 024647 103 LVTIAQA------M--------HWFD---------LPQFYNQVKWVLKKPNGVIATWCYT 139 (265)
Q Consensus 103 lv~~~~~------~--------~~~~---------~~~~l~~~~~~Lk~pgG~l~~~~~~ 139 (265)
.|++.-. + .|.. ...+++.+.++|| |||+|+..+..
T Consensus 143 ~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lk-pgG~lvYstcs 201 (264)
T TIGR00446 143 AILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALK-PGGVLVYSTCS 201 (264)
T ss_pred EEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcC-CCCEEEEEeCC
Confidence 9997431 1 1110 1248899999999 99999877664
No 136
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.05 E-value=2e-09 Score=97.72 Aligned_cols=122 Identities=14% Similarity=0.167 Sum_probs=81.6
Q ss_pred HHHHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHc------CCCceEEecCCccchhhhh
Q 024647 21 EELFKFITSKT--TNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATK------LPNIRYELTSPAMSIAELE 92 (265)
Q Consensus 21 ~~l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~------~~~~~~~~~~~~~~~~d~~ 92 (265)
+.+++.+.+.. .++.+|||+|||+|.++..+++.+.+|+|+|+|+.|++.|++ ..++.+..+++. ..+.
T Consensus 283 e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~---~~l~ 359 (443)
T PRK13168 283 QKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARENARRNGLDNVTFYHANLE---EDFT 359 (443)
T ss_pred HHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChH---Hhhh
Confidence 45556655544 356799999999999999999999999999999999998875 245777774431 0111
Q ss_pred hccCCCCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEecCCCCCChHHHHh
Q 024647 93 QNVAAQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCYTVPEVNVSVDAV 150 (265)
Q Consensus 93 ~~~~~~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~~~~~~~~~~~~~ 150 (265)
..++.+++||+|+++-.- ......++.+.+ ++ |++.+++.+ ++.++...+..+
T Consensus 360 ~~~~~~~~fD~Vi~dPPr--~g~~~~~~~l~~-~~-~~~ivyvSC-np~tlaRDl~~L 412 (443)
T PRK13168 360 DQPWALGGFDKVLLDPPR--AGAAEVMQALAK-LG-PKRIVYVSC-NPATLARDAGVL 412 (443)
T ss_pred hhhhhcCCCCEEEECcCC--cChHHHHHHHHh-cC-CCeEEEEEe-ChHHhhccHHHH
Confidence 222345679999986421 122355555555 68 888887766 444554555544
No 137
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.05 E-value=1.9e-09 Score=97.91 Aligned_cols=99 Identities=12% Similarity=0.238 Sum_probs=74.0
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcC---CcEEEEcCCHHHHHHHHcC------CCceEEecCCccchhhhhhccCCCCcee
Q 024647 32 TNHELAWDVGTGSGQAAASLSGIF---ENVIGTETSPKQIEFATKL------PNIRYELTSPAMSIAELEQNVAAQSTVD 102 (265)
Q Consensus 32 ~~~~~vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~d~~~~~~~~~~~D 102 (265)
.++.+|||+|||+|..+..+++.. .+|+++|+|+.|++.+++. .++.+.. +|+..++ ++++||
T Consensus 249 ~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~-------~Da~~~~-~~~~fD 320 (445)
T PRK14904 249 QPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIE-------GDARSFS-PEEQPD 320 (445)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEe-------Ccccccc-cCCCCC
Confidence 356799999999999999988753 4799999999999988752 3455555 5655554 556899
Q ss_pred EEEecc----c--------cccC-Ch----------hHHHHHHHHHhcCCCcEEEEEecC
Q 024647 103 LVTIAQ----A--------MHWF-DL----------PQFYNQVKWVLKKPNGVIATWCYT 139 (265)
Q Consensus 103 lv~~~~----~--------~~~~-~~----------~~~l~~~~~~Lk~pgG~l~~~~~~ 139 (265)
+|++.- . ++|. ++ ..++.++.++|+ |||++++.+..
T Consensus 321 ~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lk-pgG~lvystcs 379 (445)
T PRK14904 321 AILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLK-PGGVLVYATCS 379 (445)
T ss_pred EEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcC-CCcEEEEEeCC
Confidence 999631 1 1232 22 258999999999 99999987765
No 138
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.04 E-value=2.3e-09 Score=93.10 Aligned_cols=106 Identities=15% Similarity=0.179 Sum_probs=71.1
Q ss_pred CCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcC------CCceEEecCCccchhhhhhccC-CCCceeEEE
Q 024647 33 NHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKL------PNIRYELTSPAMSIAELEQNVA-AQSTVDLVT 105 (265)
Q Consensus 33 ~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~d~~~~~~-~~~~~Dlv~ 105 (265)
++.+|||+|||+|.++..+++.+.+|+|+|+|+.+++.|++. .++++.. +|+.++.. ..+.||+|+
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~-------~D~~~~~~~~~~~~D~Vv 245 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAKQSAAELGLTNVQFQA-------LDSTQFATAQGEVPDLVL 245 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEE-------cCHHHHHHhcCCCCeEEE
Confidence 457899999999999999999988999999999999988752 3567777 55555432 235799999
Q ss_pred eccccccCChhHHHHHHHHHhcCCCcEEEEEecCCCCCChHHHH
Q 024647 106 IAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCYTVPEVNVSVDA 149 (265)
Q Consensus 106 ~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~~~~~~~~~~~~ 149 (265)
++-. .-....-+.++...++ |++++++.+ ++.++...+..
T Consensus 246 ~dPP--r~G~~~~~~~~l~~~~-~~~ivyvsc-~p~t~~rd~~~ 285 (315)
T PRK03522 246 VNPP--RRGIGKELCDYLSQMA-PRFILYSSC-NAQTMAKDLAH 285 (315)
T ss_pred ECCC--CCCccHHHHHHHHHcC-CCeEEEEEC-CcccchhHHhh
Confidence 8743 1111122333344467 776666544 43444444443
No 139
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.03 E-value=1.9e-09 Score=97.26 Aligned_cols=100 Identities=15% Similarity=0.213 Sum_probs=73.9
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcC---CcEEEEcCCHHHHHHHHcC------CCceEEecCCccchhhhhhcc-CCCCce
Q 024647 32 TNHELAWDVGTGSGQAAASLSGIF---ENVIGTETSPKQIEFATKL------PNIRYELTSPAMSIAELEQNV-AAQSTV 101 (265)
Q Consensus 32 ~~~~~vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~d~~~~~-~~~~~~ 101 (265)
.++.+|||+|||+|..|..+++.. .+|+++|+|+.+++.+++. .++.+.. +|+..++ ..+++|
T Consensus 236 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~-------~Da~~l~~~~~~~f 308 (431)
T PRK14903 236 EPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKI-------ADAERLTEYVQDTF 308 (431)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEE-------CchhhhhhhhhccC
Confidence 456789999999999999998864 5799999999999988752 3455555 5555443 235689
Q ss_pred eEEEeccc---cccC--C------------------hhHHHHHHHHHhcCCCcEEEEEecC
Q 024647 102 DLVTIAQA---MHWF--D------------------LPQFYNQVKWVLKKPNGVIATWCYT 139 (265)
Q Consensus 102 Dlv~~~~~---~~~~--~------------------~~~~l~~~~~~Lk~pgG~l~~~~~~ 139 (265)
|.|++.-. +..+ + ..+.+.++.+.|+ |||.++..+..
T Consensus 309 D~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~Lk-pGG~LvYsTCs 368 (431)
T PRK14903 309 DRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLE-KGGILLYSTCT 368 (431)
T ss_pred CEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcC-CCCEEEEEECC
Confidence 99997431 1111 1 1356889999999 99999987765
No 140
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=99.03 E-value=1.5e-09 Score=86.48 Aligned_cols=128 Identities=15% Similarity=0.193 Sum_probs=72.8
Q ss_pred HHHhhhCCCCcHHHHHHHHhhC---CCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcCCCceEEecCCcc
Q 024647 10 KQYAETRPNYPEELFKFITSKT---TNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKLPNIRYELTSPAM 86 (265)
Q Consensus 10 ~~Y~~~rp~y~~~l~~~l~~~~---~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~ 86 (265)
+.|.+.....|..-++.+...+ ++...|-|+|||.+.++..+. ...+|...|+.+. |-....
T Consensus 46 ~Gfr~Qv~~WP~nPvd~iI~~l~~~~~~~viaD~GCGdA~la~~~~-~~~~V~SfDLva~---------n~~Vta----- 110 (219)
T PF05148_consen 46 EGFRQQVKKWPVNPVDVIIEWLKKRPKSLVIADFGCGDAKLAKAVP-NKHKVHSFDLVAP---------NPRVTA----- 110 (219)
T ss_dssp HHHHHHHCTSSS-HHHHHHHHHCTS-TTS-EEEES-TT-HHHHH---S---EEEEESS-S---------STTEEE-----
T ss_pred HHHHHHHhcCCCCcHHHHHHHHHhcCCCEEEEECCCchHHHHHhcc-cCceEEEeeccCC---------CCCEEE-----
Confidence 3444443333444444444332 455689999999999986653 3356888888553 222334
Q ss_pred chhhhhhccCCCCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEecCCC-CCChHHHHhhcccc
Q 024647 87 SIAELEQNVAAQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCYTVP-EVNVSVDAVFQPFY 155 (265)
Q Consensus 87 ~~~d~~~~~~~~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~~~~-~~~~~~~~~~~~~~ 155 (265)
.|+..+|++++++|++++..++.=-|...++.|+.|+|| |||.|.+...... .-...+.+....+.
T Consensus 111 --cdia~vPL~~~svDv~VfcLSLMGTn~~~fi~EA~RvLK-~~G~L~IAEV~SRf~~~~~F~~~~~~~G 177 (219)
T PF05148_consen 111 --CDIANVPLEDESVDVAVFCLSLMGTNWPDFIREANRVLK-PGGILKIAEVKSRFENVKQFIKALKKLG 177 (219)
T ss_dssp --S-TTS-S--TT-EEEEEEES---SS-HHHHHHHHHHHEE-EEEEEEEEEEGGG-S-HHHHHHHHHCTT
T ss_pred --ecCccCcCCCCceeEEEEEhhhhCCCcHHHHHHHHheec-cCcEEEEEEecccCcCHHHHHHHHHHCC
Confidence 678899999999999999999887899999999999999 9999998665421 11244444444443
No 141
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.01 E-value=6.3e-09 Score=88.51 Aligned_cols=123 Identities=21% Similarity=0.243 Sum_probs=80.6
Q ss_pred cHHHHHHHHhhCCCCC-eEEEEcCCcchhHHHHHhcCC--cEEEEcCCHHHHHHHHcC---CC---ceEEecCCccchhh
Q 024647 20 PEELFKFITSKTTNHE-LAWDVGTGSGQAAASLSGIFE--NVIGTETSPKQIEFATKL---PN---IRYELTSPAMSIAE 90 (265)
Q Consensus 20 ~~~l~~~l~~~~~~~~-~vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~---~~---~~~~~~~~~~~~~d 90 (265)
...+++.+........ +|||+|||+|..+..++..++ +|+|+|+|+..++.|++. .+ +.+.. +|
T Consensus 96 Te~Lve~~l~~~~~~~~~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~-------~d 168 (280)
T COG2890 96 TELLVEAALALLLQLDKRILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQ-------SD 168 (280)
T ss_pred hHHHHHHHHHhhhhcCCcEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEe-------ee
Confidence 4556666542332222 799999999999999999987 799999999999998752 22 22232 22
Q ss_pred hhhccCCCCceeEEEeccc-ccc----C-------Ch--------------hHHHHHHHHHhcCCCcEEEEEecCCCCCC
Q 024647 91 LEQNVAAQSTVDLVTIAQA-MHW----F-------DL--------------PQFYNQVKWVLKKPNGVIATWCYTVPEVN 144 (265)
Q Consensus 91 ~~~~~~~~~~~Dlv~~~~~-~~~----~-------~~--------------~~~l~~~~~~Lk~pgG~l~~~~~~~~~~~ 144 (265)
+- ..-.++||+|++|-. +.- . +| ..++.++.+.|+ |||.+++...... .
T Consensus 169 lf--~~~~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~-~~g~l~le~g~~q--~ 243 (280)
T COG2890 169 LF--EPLRGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILK-PGGVLILEIGLTQ--G 243 (280)
T ss_pred cc--cccCCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcC-CCcEEEEEECCCc--H
Confidence 21 112348999999862 111 0 11 257888999999 9999988554322 3
Q ss_pred hHHHHhhccc
Q 024647 145 VSVDAVFQPF 154 (265)
Q Consensus 145 ~~~~~~~~~~ 154 (265)
+.+.+++.+.
T Consensus 244 ~~v~~~~~~~ 253 (280)
T COG2890 244 EAVKALFEDT 253 (280)
T ss_pred HHHHHHHHhc
Confidence 5555555443
No 142
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=99.00 E-value=2.2e-09 Score=89.67 Aligned_cols=96 Identities=19% Similarity=0.268 Sum_probs=76.0
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcCC--cEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEeccc
Q 024647 32 TNHELAWDVGTGSGQAAASLSGIFE--NVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQA 109 (265)
Q Consensus 32 ~~~~~vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~ 109 (265)
.+..+|||||+|+|.++..++++++ +++..|. |.+++.+++..++++.. +|+. -++|. +|+++..+.
T Consensus 99 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~~~rv~~~~-------gd~f-~~~P~--~D~~~l~~v 167 (241)
T PF00891_consen 99 SGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKEADRVEFVP-------GDFF-DPLPV--ADVYLLRHV 167 (241)
T ss_dssp TTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHHTTTEEEEE-------S-TT-TCCSS--ESEEEEESS
T ss_pred cCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccccccccccc-------ccHH-hhhcc--ccceeeehh
Confidence 3456899999999999999999987 5888999 88888887767888888 5654 33444 999999999
Q ss_pred cccCCh---hHHHHHHHHHhcCCC--cEEEEEecC
Q 024647 110 MHWFDL---PQFYNQVKWVLKKPN--GVIATWCYT 139 (265)
Q Consensus 110 ~~~~~~---~~~l~~~~~~Lk~pg--G~l~~~~~~ 139 (265)
+|..+. ...|+++++.|+ || |+|++....
T Consensus 168 Lh~~~d~~~~~iL~~~~~al~-pg~~g~llI~e~~ 201 (241)
T PF00891_consen 168 LHDWSDEDCVKILRNAAAALK-PGKDGRLLIIEMV 201 (241)
T ss_dssp GGGS-HHHHHHHHHHHHHHSE-ECTTEEEEEEEEE
T ss_pred hhhcchHHHHHHHHHHHHHhC-CCCCCeEEEEeec
Confidence 997733 368999999999 99 999886654
No 143
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.99 E-value=3.3e-09 Score=86.85 Aligned_cols=115 Identities=23% Similarity=0.267 Sum_probs=88.5
Q ss_pred hCCCCcHHHHHHHHhh-CCCCCeEEEEcCCcchhHHHHHhc-C--CcEEEEcCCHHHHHHHHcC------CC-ceEEecC
Q 024647 15 TRPNYPEELFKFITSK-TTNHELAWDVGTGSGQAAASLSGI-F--ENVIGTETSPKQIEFATKL------PN-IRYELTS 83 (265)
Q Consensus 15 ~rp~y~~~l~~~l~~~-~~~~~~vlDvGcG~G~~~~~l~~~-~--~~v~~vD~s~~~~~~a~~~------~~-~~~~~~~ 83 (265)
.++-||++....+... +.++++|+|.|.|+|.++..|+.. + .+|+..|+.+...+.|++. .+ +.+..
T Consensus 75 tQiIyPKD~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~-- 152 (256)
T COG2519 75 TQIIYPKDAGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKL-- 152 (256)
T ss_pred CceecCCCHHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEe--
Confidence 4567887777555443 368899999999999999999974 3 4799999999999999862 22 44444
Q ss_pred CccchhhhhhccCCCCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEecCCCC
Q 024647 84 PAMSIAELEQNVAAQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCYTVPE 142 (265)
Q Consensus 84 ~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~~~~~ 142 (265)
+|+.+...+ +.||.|+... .+|-.++..+.++|+ |||.++++.+.-.+
T Consensus 153 -----~Dv~~~~~~-~~vDav~LDm----p~PW~~le~~~~~Lk-pgg~~~~y~P~veQ 200 (256)
T COG2519 153 -----GDVREGIDE-EDVDAVFLDL----PDPWNVLEHVSDALK-PGGVVVVYSPTVEQ 200 (256)
T ss_pred -----ccccccccc-cccCEEEEcC----CChHHHHHHHHHHhC-CCcEEEEEcCCHHH
Confidence 666555434 3899999872 277799999999999 99999998876433
No 144
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.99 E-value=2.9e-09 Score=85.16 Aligned_cols=136 Identities=15% Similarity=0.256 Sum_probs=91.0
Q ss_pred HHHHHHHHhhCCCCCe-EEEEcCCcchhHHHHHhcCCc--EEEEcCCHHHHHHHHc------CCCceEEecCCccchhhh
Q 024647 21 EELFKFITSKTTNHEL-AWDVGTGSGQAAASLSGIFEN--VIGTETSPKQIEFATK------LPNIRYELTSPAMSIAEL 91 (265)
Q Consensus 21 ~~l~~~l~~~~~~~~~-vlDvGcG~G~~~~~l~~~~~~--v~~vD~s~~~~~~a~~------~~~~~~~~~~~~~~~~d~ 91 (265)
+-+.+.|....++... |||||||||+-+..+++++++ ..-.|+++..+...+. .+|+. .+.. -|+
T Consensus 12 ~pIl~vL~~~l~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~---~P~~---lDv 85 (204)
T PF06080_consen 12 DPILEVLKQYLPDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVR---PPLA---LDV 85 (204)
T ss_pred hHHHHHHHHHhCccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccC---CCeE---eec
Confidence 3456677777776665 999999999999999999986 4577888887543221 23321 1221 122
Q ss_pred hh--ccC------CCCceeEEEeccccccCCh---hHHHHHHHHHhcCCCcEEEEEecC--CCCCChHHHHhhcccccCC
Q 024647 92 EQ--NVA------AQSTVDLVTIAQAMHWFDL---PQFYNQVKWVLKKPNGVIATWCYT--VPEVNVSVDAVFQPFYTVD 158 (265)
Q Consensus 92 ~~--~~~------~~~~~Dlv~~~~~~~~~~~---~~~l~~~~~~Lk~pgG~l~~~~~~--~~~~~~~~~~~~~~~~~~~ 158 (265)
.. ++. ..++||+|++.+.+|.... +.+++.+.++|+ +||.|+++.+. +..+..+-++.|..... .
T Consensus 86 ~~~~w~~~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~-~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr-~ 163 (204)
T PF06080_consen 86 SAPPWPWELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLK-PGGLLFLYGPFNRDGKFTSESNAAFDASLR-S 163 (204)
T ss_pred CCCCCccccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCC-CCCEEEEeCCcccCCEeCCcHHHHHHHHHh-c
Confidence 22 222 3568999999999997754 468999999999 99999998874 33334444455544443 3
Q ss_pred CCCCcc
Q 024647 159 SDPFWE 164 (265)
Q Consensus 159 ~~~~~~ 164 (265)
-.|.|.
T Consensus 164 rdp~~G 169 (204)
T PF06080_consen 164 RDPEWG 169 (204)
T ss_pred CCCCcC
Confidence 346665
No 145
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.97 E-value=5.5e-09 Score=86.74 Aligned_cols=107 Identities=13% Similarity=0.202 Sum_probs=73.3
Q ss_pred HHHHHHhhCCCCCeEEEEcCCcchhHHHHHhcC---CcEEEEcCCHHHHHHHHcC-------CCceEEecCCccchhhhh
Q 024647 23 LFKFITSKTTNHELAWDVGTGSGQAAASLSGIF---ENVIGTETSPKQIEFATKL-------PNIRYELTSPAMSIAELE 92 (265)
Q Consensus 23 l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~d~~ 92 (265)
++..+... .++.+|||+|||+|..+..++... .+|+++|+++.+++.|++. .++++..+++.- -+.
T Consensus 59 ~L~~l~~~-~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~---~L~ 134 (234)
T PLN02781 59 FLSMLVKI-MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALS---ALD 134 (234)
T ss_pred HHHHHHHH-hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHH---HHH
Confidence 33333333 346789999999999999888753 4799999999999988752 346666644310 011
Q ss_pred hcc--CCCCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEE
Q 024647 93 QNV--AAQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATW 136 (265)
Q Consensus 93 ~~~--~~~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~ 136 (265)
.+. .+.++||+|++...- -.....+..+.++|+ |||.+++-
T Consensus 135 ~l~~~~~~~~fD~VfiDa~k--~~y~~~~~~~~~ll~-~GG~ii~d 177 (234)
T PLN02781 135 QLLNNDPKPEFDFAFVDADK--PNYVHFHEQLLKLVK-VGGIIAFD 177 (234)
T ss_pred HHHhCCCCCCCCEEEECCCH--HHHHHHHHHHHHhcC-CCeEEEEE
Confidence 111 124689999986321 123468899999999 99998873
No 146
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.97 E-value=1e-08 Score=91.29 Aligned_cols=112 Identities=11% Similarity=0.081 Sum_probs=75.2
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcCC-cEEEEcCCHHHHHHHHcC--------CCceEEecCCccchhhhhhc----cCCC
Q 024647 32 TNHELAWDVGTGSGQAAASLSGIFE-NVIGTETSPKQIEFATKL--------PNIRYELTSPAMSIAELEQN----VAAQ 98 (265)
Q Consensus 32 ~~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~--------~~~~~~~~~~~~~~~d~~~~----~~~~ 98 (265)
.++.+|||+|||+|.++..++..++ +|+++|+|+.+++.|++. .+++++. +|+.++ ....
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~-------~D~~~~l~~~~~~~ 291 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVR-------DDVFKLLRTYRDRG 291 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEE-------ccHHHHHHHHHhcC
Confidence 4567899999999999988766655 799999999999988752 1455666 444332 1235
Q ss_pred CceeEEEeccccccC----------ChhHHHHHHHHHhcCCCcEEEEEecCCCCCChHHHHhh
Q 024647 99 STVDLVTIAQAMHWF----------DLPQFYNQVKWVLKKPNGVIATWCYTVPEVNVSVDAVF 151 (265)
Q Consensus 99 ~~~Dlv~~~~~~~~~----------~~~~~l~~~~~~Lk~pgG~l~~~~~~~~~~~~~~~~~~ 151 (265)
++||+|+++-..--- +...++..+.++|+ |||.|+........-.+.+.++.
T Consensus 292 ~~fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk-~gG~lv~~scs~~~~~~~f~~~v 353 (396)
T PRK15128 292 EKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLN-PGGILLTFSCSGLMTSDLFQKII 353 (396)
T ss_pred CCCCEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcC-CCeEEEEEeCCCcCCHHHHHHHH
Confidence 689999998532111 12345567789999 99999875544222224444443
No 147
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.97 E-value=2.3e-09 Score=91.11 Aligned_cols=83 Identities=12% Similarity=0.079 Sum_probs=64.0
Q ss_pred cHHHHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcC---CCceEEecCCccchhhhhhc
Q 024647 20 PEELFKFITSKT--TNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKL---PNIRYELTSPAMSIAELEQN 94 (265)
Q Consensus 20 ~~~l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~---~~~~~~~~~~~~~~~d~~~~ 94 (265)
++.+++.+.... .++.+|||+|||+|.+|..+++++.+|+|+|+++.|++.+++. +++++.. +|+.++
T Consensus 27 ~~~i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~~~~~~v~~i~-------~D~~~~ 99 (272)
T PRK00274 27 DENILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAETFAEDNLTIIE-------GDALKV 99 (272)
T ss_pred CHHHHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHhhccCceEEEE-------ChhhcC
Confidence 556777766654 4667899999999999999999999999999999999998753 3566666 677776
Q ss_pred cCCCCceeEEEeccc
Q 024647 95 VAAQSTVDLVTIAQA 109 (265)
Q Consensus 95 ~~~~~~~Dlv~~~~~ 109 (265)
++++-..|.|+++..
T Consensus 100 ~~~~~~~~~vv~NlP 114 (272)
T PRK00274 100 DLSELQPLKVVANLP 114 (272)
T ss_pred CHHHcCcceEEEeCC
Confidence 544322588888754
No 148
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.96 E-value=2.1e-09 Score=97.02 Aligned_cols=104 Identities=10% Similarity=0.176 Sum_probs=72.0
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcC--CcEEEEcCCHHHHHHHHcC---CCceEEecCCccchhhhhhccC--CCCceeEE
Q 024647 32 TNHELAWDVGTGSGQAAASLSGIF--ENVIGTETSPKQIEFATKL---PNIRYELTSPAMSIAELEQNVA--AQSTVDLV 104 (265)
Q Consensus 32 ~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~---~~~~~~~~~~~~~~~d~~~~~~--~~~~~Dlv 104 (265)
.++.+|||+|||+|..+..+++.. .+|+++|+++.+++.+++. .++.... ....+|....+. +.++||.|
T Consensus 237 ~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v---~~~~~d~~~~~~~~~~~~fD~V 313 (426)
T TIGR00563 237 QNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKA---ETKDGDGRGPSQWAENEQFDRI 313 (426)
T ss_pred CCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEE---EEeccccccccccccccccCEE
Confidence 356899999999999999999865 4799999999999988742 2222110 011134333322 45689999
Q ss_pred Eecc------ccc------cC-C----------hhHHHHHHHHHhcCCCcEEEEEecC
Q 024647 105 TIAQ------AMH------WF-D----------LPQFYNQVKWVLKKPNGVIATWCYT 139 (265)
Q Consensus 105 ~~~~------~~~------~~-~----------~~~~l~~~~~~Lk~pgG~l~~~~~~ 139 (265)
++.- .++ |. + ...++.++.++|| |||.++..+..
T Consensus 314 llDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~Lk-pgG~lvystcs 370 (426)
T TIGR00563 314 LLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLK-TGGTLVYATCS 370 (426)
T ss_pred EEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcC-CCcEEEEEeCC
Confidence 9632 232 22 1 2468999999999 99999987765
No 149
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.96 E-value=4.7e-09 Score=95.33 Aligned_cols=99 Identities=12% Similarity=0.198 Sum_probs=72.5
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcC---CcEEEEcCCHHHHHHHHcC------CCceEEecCCccchhhhhhcc--CCCCc
Q 024647 32 TNHELAWDVGTGSGQAAASLSGIF---ENVIGTETSPKQIEFATKL------PNIRYELTSPAMSIAELEQNV--AAQST 100 (265)
Q Consensus 32 ~~~~~vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~d~~~~~--~~~~~ 100 (265)
.++.+|||+|||+|..+..+++.. .+|+++|+++.+++.+++. .++.+.. +|+..+. ++ ++
T Consensus 249 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~-------~D~~~~~~~~~-~~ 320 (444)
T PRK14902 249 KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKA-------LDARKVHEKFA-EK 320 (444)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEe-------CCcccccchhc-cc
Confidence 456789999999999999999864 4799999999999988652 3456665 5554432 22 68
Q ss_pred eeEEEecccc------------ccC-Ch----------hHHHHHHHHHhcCCCcEEEEEecC
Q 024647 101 VDLVTIAQAM------------HWF-DL----------PQFYNQVKWVLKKPNGVIATWCYT 139 (265)
Q Consensus 101 ~Dlv~~~~~~------------~~~-~~----------~~~l~~~~~~Lk~pgG~l~~~~~~ 139 (265)
||+|++.... .|. .+ ..++..+.++|| |||.++..+..
T Consensus 321 fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~Lk-pGG~lvystcs 381 (444)
T PRK14902 321 FDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLK-KGGILVYSTCT 381 (444)
T ss_pred CCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcC-CCCEEEEEcCC
Confidence 9999985421 121 11 247899999999 99999876553
No 150
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.95 E-value=6.3e-10 Score=94.84 Aligned_cols=93 Identities=20% Similarity=0.204 Sum_probs=71.1
Q ss_pred CCCeEEEEcCCcchhHHHHHhcCC-cEEEEcCCHHHHHHHHcC------CC-ceEEecCCccchhhhhhccCCCCceeEE
Q 024647 33 NHELAWDVGTGSGQAAASLSGIFE-NVIGTETSPKQIEFATKL------PN-IRYELTSPAMSIAELEQNVAAQSTVDLV 104 (265)
Q Consensus 33 ~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~------~~-~~~~~~~~~~~~~d~~~~~~~~~~~Dlv 104 (265)
+++.|||||||||.++...++.|+ +|+|||.|.-+ +.|.+. .+ +++.. +.++++.+|-+.+|+|
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~-------gkvEdi~LP~eKVDiI 131 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKDNGLEDVITVIK-------GKVEDIELPVEKVDII 131 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHHHhcCccceEEEee-------cceEEEecCccceeEE
Confidence 578999999999999999999997 69999998775 666542 22 55555 5566666667899999
Q ss_pred EeccccccCCh----hHHHHHHHHHhcCCCcEEE
Q 024647 105 TIAQAMHWFDL----PQFYNQVKWVLKKPNGVIA 134 (265)
Q Consensus 105 ~~~~~~~~~~~----~~~l~~~~~~Lk~pgG~l~ 134 (265)
++-+.-+|+=. ..++-.-.+-|+ |||.++
T Consensus 132 vSEWMGy~Ll~EsMldsVl~ARdkwL~-~~G~i~ 164 (346)
T KOG1499|consen 132 VSEWMGYFLLYESMLDSVLYARDKWLK-EGGLIY 164 (346)
T ss_pred eehhhhHHHHHhhhhhhhhhhhhhccC-CCceEc
Confidence 99987666533 345555578899 999775
No 151
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.93 E-value=1.7e-09 Score=103.17 Aligned_cols=100 Identities=16% Similarity=0.099 Sum_probs=73.5
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcCC-cEEEEcCCHHHHHHHHcC--------CCceEEecCCccchhhhhhcc-CCCCce
Q 024647 32 TNHELAWDVGTGSGQAAASLSGIFE-NVIGTETSPKQIEFATKL--------PNIRYELTSPAMSIAELEQNV-AAQSTV 101 (265)
Q Consensus 32 ~~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~--------~~~~~~~~~~~~~~~d~~~~~-~~~~~~ 101 (265)
.++.+|||+|||+|.++..++..++ +|++||+|+.+++.+++. .++.++. +|+.++. ...++|
T Consensus 537 ~~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~-------~D~~~~l~~~~~~f 609 (702)
T PRK11783 537 AKGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQ-------ADCLAWLKEAREQF 609 (702)
T ss_pred cCCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEE-------ccHHHHHHHcCCCc
Confidence 3467899999999999999999876 599999999999998862 1355555 5543321 124689
Q ss_pred eEEEecccc-c----------cC-ChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647 102 DLVTIAQAM-H----------WF-DLPQFYNQVKWVLKKPNGVIATWCYT 139 (265)
Q Consensus 102 Dlv~~~~~~-~----------~~-~~~~~l~~~~~~Lk~pgG~l~~~~~~ 139 (265)
|+|+++-.. - .. +...++..+.++|+ |||.+++.+..
T Consensus 610 DlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~-~gG~l~~~~~~ 658 (702)
T PRK11783 610 DLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLR-PGGTLYFSNNK 658 (702)
T ss_pred CEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcC-CCCEEEEEeCC
Confidence 999996421 0 11 23467888999999 99999875543
No 152
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.92 E-value=4.9e-09 Score=94.94 Aligned_cols=114 Identities=19% Similarity=0.257 Sum_probs=76.9
Q ss_pred CCCcHHHHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHc------CCCceEEecCCccch
Q 024647 17 PNYPEELFKFITSKT--TNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATK------LPNIRYELTSPAMSI 88 (265)
Q Consensus 17 p~y~~~l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~------~~~~~~~~~~~~~~~ 88 (265)
+...+.+++.+.... .++.+|||+|||+|.++..+++...+|+|+|+++.|++.|++ ..|+.+..+++.
T Consensus 274 ~~~~~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~--- 350 (431)
T TIGR00479 274 SGQNEKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLE--- 350 (431)
T ss_pred HHHHHHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHH---
Confidence 334455666665544 355789999999999999999988899999999999998875 246777774431
Q ss_pred hhhhhccCCCCceeEEEeccccccCC-hhHHHHHHHHHhcCCCcEEEEEe
Q 024647 89 AELEQNVAAQSTVDLVTIAQAMHWFD-LPQFYNQVKWVLKKPNGVIATWC 137 (265)
Q Consensus 89 ~d~~~~~~~~~~~Dlv~~~~~~~~~~-~~~~l~~~~~~Lk~pgG~l~~~~ 137 (265)
..+..+...+++||+|++.-.- .. ...+++.+.+ ++ |++.+++.+
T Consensus 351 ~~l~~~~~~~~~~D~vi~dPPr--~G~~~~~l~~l~~-l~-~~~ivyvsc 396 (431)
T TIGR00479 351 TVLPKQPWAGQIPDVLLLDPPR--KGCAAEVLRTIIE-LK-PERIVYVSC 396 (431)
T ss_pred HHHHHHHhcCCCCCEEEECcCC--CCCCHHHHHHHHh-cC-CCEEEEEcC
Confidence 0011222335679999975421 11 2456665554 78 888776644
No 153
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.90 E-value=7.6e-09 Score=87.27 Aligned_cols=84 Identities=15% Similarity=0.185 Sum_probs=65.9
Q ss_pred cHHHHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcC----CCceEEecCCccchhhhhh
Q 024647 20 PEELFKFITSKT--TNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKL----PNIRYELTSPAMSIAELEQ 93 (265)
Q Consensus 20 ~~~l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~----~~~~~~~~~~~~~~~d~~~ 93 (265)
.+.+++.+.... .++.+|||+|||+|.+|..+++++.+|+++|+++.|++.+++. +++.+.. +|+.+
T Consensus 14 d~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~~~~~v~ii~-------~D~~~ 86 (258)
T PRK14896 14 DDRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEIAAGNVEIIE-------GDALK 86 (258)
T ss_pred CHHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhccCCCEEEEE-------ecccc
Confidence 455666666553 4568899999999999999999988999999999999988752 3566665 67766
Q ss_pred ccCCCCceeEEEecccccc
Q 024647 94 NVAAQSTVDLVTIAQAMHW 112 (265)
Q Consensus 94 ~~~~~~~~Dlv~~~~~~~~ 112 (265)
++++ .+|.|+++...+.
T Consensus 87 ~~~~--~~d~Vv~NlPy~i 103 (258)
T PRK14896 87 VDLP--EFNKVVSNLPYQI 103 (258)
T ss_pred CCch--hceEEEEcCCccc
Confidence 6544 5899999987664
No 154
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.89 E-value=5e-09 Score=84.27 Aligned_cols=95 Identities=21% Similarity=0.360 Sum_probs=62.8
Q ss_pred CCCeEEEEcCCcchhHHH----HHhc----CC---cEEEEcCCHHHHHHHHcC---------------------------
Q 024647 33 NHELAWDVGTGSGQAAAS----LSGI----FE---NVIGTETSPKQIEFATKL--------------------------- 74 (265)
Q Consensus 33 ~~~~vlDvGcG~G~~~~~----l~~~----~~---~v~~vD~s~~~~~~a~~~--------------------------- 74 (265)
++-+|+.+||+||.-+.. +.+. .. +|+|+|+|+.+++.|++-
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 456899999999944333 3341 22 699999999999999851
Q ss_pred -------CCceEEecCCccchhhhhhccCCCCceeEEEeccccccCChh---HHHHHHHHHhcCCCcEEEE
Q 024647 75 -------PNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWFDLP---QFYNQVKWVLKKPNGVIAT 135 (265)
Q Consensus 75 -------~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~~~~---~~l~~~~~~Lk~pgG~l~~ 135 (265)
..+.|...+ +-+.+.+.+.||+|+|.+++-+++.+ ++++.+.+.|+ |||.|++
T Consensus 111 ~v~~~lr~~V~F~~~N-------L~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~-pgG~L~l 173 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHN-------LLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLK-PGGYLFL 173 (196)
T ss_dssp TE-HHHHTTEEEEE---------TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEE-EEEEEEE
T ss_pred eEChHHcCceEEEecc-------cCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcC-CCCEEEE
Confidence 245666533 33323356789999999999999654 69999999999 9999987
No 155
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.89 E-value=2.5e-08 Score=82.09 Aligned_cols=103 Identities=15% Similarity=0.172 Sum_probs=68.0
Q ss_pred HHHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhcCC-cEEEEcCCHHHHHH-HHcCCCce-EEecCCccchhhhhhccC
Q 024647 22 ELFKFITSKT--TNHELAWDVGTGSGQAAASLSGIFE-NVIGTETSPKQIEF-ATKLPNIR-YELTSPAMSIAELEQNVA 96 (265)
Q Consensus 22 ~l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~-a~~~~~~~-~~~~~~~~~~~d~~~~~~ 96 (265)
++...+.... .++.+|||+|||||.+|..+++.++ +|+|+|+++.|+.. .+..+.+. +...+++. -+.++.+.
T Consensus 62 kL~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~--~~~~~~~~ 139 (228)
T TIGR00478 62 KLKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQDERVKVLERTNIRY--VTPADIFP 139 (228)
T ss_pred HHHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcCCCeeEeecCCccc--CCHhHcCC
Confidence 4444444432 3567899999999999999999965 69999999988875 55444432 33334331 12233322
Q ss_pred CCCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEE
Q 024647 97 AQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIAT 135 (265)
Q Consensus 97 ~~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~ 135 (265)
.-..+|+++++.. ..+..+.+.|+ | |.+++
T Consensus 140 d~~~~DvsfiS~~-------~~l~~i~~~l~-~-~~~~~ 169 (228)
T TIGR00478 140 DFATFDVSFISLI-------SILPELDLLLN-P-NDLTL 169 (228)
T ss_pred CceeeeEEEeehH-------hHHHHHHHHhC-c-CeEEE
Confidence 2246777766533 36889999999 8 76654
No 156
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.88 E-value=1.7e-08 Score=84.89 Aligned_cols=84 Identities=15% Similarity=0.177 Sum_probs=64.0
Q ss_pred cHHHHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcC----CCceEEecCCccchhhhhh
Q 024647 20 PEELFKFITSKT--TNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKL----PNIRYELTSPAMSIAELEQ 93 (265)
Q Consensus 20 ~~~l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~----~~~~~~~~~~~~~~~d~~~ 93 (265)
.+.+.+.+.... .++.+|||+|||+|.++..+++++.+|+++|+++.|++.++.. +++.+.. +|+..
T Consensus 14 d~~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~~~~~~~~~v~v~~-------~D~~~ 86 (253)
T TIGR00755 14 DESVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILRKLLSLYERLEVIE-------GDALK 86 (253)
T ss_pred CHHHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHHHHhCcCCcEEEEE-------Cchhc
Confidence 355666666554 4568999999999999999999999999999999999988752 4555555 66666
Q ss_pred ccCCCCcee---EEEecccccc
Q 024647 94 NVAAQSTVD---LVTIAQAMHW 112 (265)
Q Consensus 94 ~~~~~~~~D---lv~~~~~~~~ 112 (265)
.+.+ .+| +|+++...|+
T Consensus 87 ~~~~--~~d~~~~vvsNlPy~i 106 (253)
T TIGR00755 87 VDLP--DFPKQLKVVSNLPYNI 106 (253)
T ss_pred CChh--HcCCcceEEEcCChhh
Confidence 6543 466 8888866554
No 157
>PRK00536 speE spermidine synthase; Provisional
Probab=98.88 E-value=2.9e-08 Score=83.11 Aligned_cols=105 Identities=16% Similarity=0.012 Sum_probs=79.6
Q ss_pred CcHHHHHHHHhhCCCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHc-C---------CCceEEecCCccch
Q 024647 19 YPEELFKFITSKTTNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATK-L---------PNIRYELTSPAMSI 88 (265)
Q Consensus 19 y~~~l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~-~---------~~~~~~~~~~~~~~ 88 (265)
|.+.++.--+...+.+++||=+|.|.|...+.++++-.+|+.||+++.+++.+++ + ++++...
T Consensus 58 YHEmLvHppl~~h~~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~------- 130 (262)
T PRK00536 58 ESELLAHMGGCTKKELKEVLIVDGFDLELAHQLFKYDTHVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK------- 130 (262)
T ss_pred HHHHHHHHHHhhCCCCCeEEEEcCCchHHHHHHHCcCCeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee-------
Confidence 4455555444455778999999999999999999987799999999999999997 2 2333332
Q ss_pred hhhhhccCCCCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647 89 AELEQNVAAQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCY 138 (265)
Q Consensus 89 ~d~~~~~~~~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~ 138 (265)
. +.+ ...++||+|++... ..+.+++.+.++|+ |||+++...-
T Consensus 131 ~-~~~--~~~~~fDVIIvDs~----~~~~fy~~~~~~L~-~~Gi~v~Qs~ 172 (262)
T PRK00536 131 Q-LLD--LDIKKYDLIICLQE----PDIHKIDGLKRMLK-EDGVFISVAK 172 (262)
T ss_pred h-hhh--ccCCcCCEEEEcCC----CChHHHHHHHHhcC-CCcEEEECCC
Confidence 1 111 12468999998743 45789999999999 9999998543
No 158
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.88 E-value=5.8e-08 Score=74.34 Aligned_cols=115 Identities=14% Similarity=0.163 Sum_probs=87.8
Q ss_pred cHHHHHHHHhhCC--CCCeEEEEcCCcchhHHHHHhcCC---cEEEEcCCHHHHHHHHc-CCCceEEecCCccchhhhhh
Q 024647 20 PEELFKFITSKTT--NHELAWDVGTGSGQAAASLSGIFE---NVIGTETSPKQIEFATK-LPNIRYELTSPAMSIAELEQ 93 (265)
Q Consensus 20 ~~~l~~~l~~~~~--~~~~vlDvGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~-~~~~~~~~~~~~~~~~d~~~ 93 (265)
++-+.+.+.+... .+..|||+|.|||.+|.++.+++. .++++|.|+....+.++ .+.++++++++ -+++.
T Consensus 33 Ss~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda----~~l~~ 108 (194)
T COG3963 33 SSILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDA----FDLRT 108 (194)
T ss_pred cHHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccch----hhHHH
Confidence 4566666666543 345799999999999999999874 59999999999998876 57888888655 22221
Q ss_pred -cc-CCCCceeEEEeccccccCCh---hHHHHHHHHHhcCCCcEEEEEecC
Q 024647 94 -NV-AAQSTVDLVTIAQAMHWFDL---PQFYNQVKWVLKKPNGVIATWCYT 139 (265)
Q Consensus 94 -~~-~~~~~~Dlv~~~~~~~~~~~---~~~l~~~~~~Lk~pgG~l~~~~~~ 139 (265)
+. ..+.-||.|+|...+--+.. .+.++.+...|. +||.++...++
T Consensus 109 ~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~-~gg~lvqftYg 158 (194)
T COG3963 109 TLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLP-AGGPLVQFTYG 158 (194)
T ss_pred HHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcC-CCCeEEEEEec
Confidence 11 24557999999886665643 368899999999 99999988887
No 159
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.87 E-value=8.5e-09 Score=84.18 Aligned_cols=88 Identities=17% Similarity=0.227 Sum_probs=71.0
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEeccccc
Q 024647 32 TNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMH 111 (265)
Q Consensus 32 ~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~ 111 (265)
+....|-|+|||.+.++. ....+|...|+.+. |-+.+. .|+.++|++++++|++++..++.
T Consensus 179 ~~~~vIaD~GCGEakiA~---~~~~kV~SfDL~a~---------~~~V~~-------cDm~~vPl~d~svDvaV~CLSLM 239 (325)
T KOG3045|consen 179 PKNIVIADFGCGEAKIAS---SERHKVHSFDLVAV---------NERVIA-------CDMRNVPLEDESVDVAVFCLSLM 239 (325)
T ss_pred cCceEEEecccchhhhhh---ccccceeeeeeecC---------CCceee-------ccccCCcCccCcccEEEeeHhhh
Confidence 566789999999987766 44567888887443 334444 67788999999999999988877
Q ss_pred cCChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647 112 WFDLPQFYNQVKWVLKKPNGVIATWCYT 139 (265)
Q Consensus 112 ~~~~~~~l~~~~~~Lk~pgG~l~~~~~~ 139 (265)
=-|...++.++.|+|+ |||.+.+....
T Consensus 240 gtn~~df~kEa~RiLk-~gG~l~IAEv~ 266 (325)
T KOG3045|consen 240 GTNLADFIKEANRILK-PGGLLYIAEVK 266 (325)
T ss_pred cccHHHHHHHHHHHhc-cCceEEEEehh
Confidence 6699999999999999 99999986654
No 160
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.85 E-value=6e-09 Score=93.97 Aligned_cols=119 Identities=18% Similarity=0.307 Sum_probs=80.7
Q ss_pred hHHHHHHHHHhhhCCCCcHHHHHHHHhhCC------CCCeEEEEcCCcchhHHHHHhcC------CcEEEEcCCHHHHHH
Q 024647 3 ELFIKQAKQYAETRPNYPEELFKFITSKTT------NHELAWDVGTGSGQAAASLSGIF------ENVIGTETSPKQIEF 70 (265)
Q Consensus 3 ~~f~~~a~~Y~~~rp~y~~~l~~~l~~~~~------~~~~vlDvGcG~G~~~~~l~~~~------~~v~~vD~s~~~~~~ 70 (265)
+.|+++.-.|+. |...+.+.|..... ++..|+|||||+|.++...++.+ .+|++||.|+.+...
T Consensus 154 e~fE~D~vKY~~----Ye~AI~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~ 229 (448)
T PF05185_consen 154 EVFEKDPVKYDQ----YERAIEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVT 229 (448)
T ss_dssp HHHCC-HHHHHH----HHHHHHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHH
T ss_pred hhHhcCHHHHHH----HHHHHHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHH
Confidence 567788888888 55556566655433 24689999999999998877665 379999999987765
Q ss_pred HHc-------CCCceEEecCCccchhhhhhccCCCCceeEEEeccccccCC---hhHHHHHHHHHhcCCCcEEE
Q 024647 71 ATK-------LPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWFD---LPQFYNQVKWVLKKPNGVIA 134 (265)
Q Consensus 71 a~~-------~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~~---~~~~l~~~~~~Lk~pgG~l~ 134 (265)
+++ ...|+++. +|++++..+ +.+|+|++-..-...+ .+.++..+.|.|| |||+++
T Consensus 230 l~~~v~~n~w~~~V~vi~-------~d~r~v~lp-ekvDIIVSElLGsfg~nEl~pE~Lda~~rfLk-p~Gi~I 294 (448)
T PF05185_consen 230 LQKRVNANGWGDKVTVIH-------GDMREVELP-EKVDIIVSELLGSFGDNELSPECLDAADRFLK-PDGIMI 294 (448)
T ss_dssp HHHHHHHTTTTTTEEEEE-------S-TTTSCHS-S-EEEEEE---BTTBTTTSHHHHHHHGGGGEE-EEEEEE
T ss_pred HHHHHHhcCCCCeEEEEe-------CcccCCCCC-CceeEEEEeccCCccccccCHHHHHHHHhhcC-CCCEEe
Confidence 532 14677777 778888644 5999999976433222 2357888899999 999876
No 161
>PLN02823 spermine synthase
Probab=98.83 E-value=3.6e-08 Score=85.73 Aligned_cols=118 Identities=19% Similarity=0.210 Sum_probs=79.1
Q ss_pred CcHHHHHHHHhhCCCCCeEEEEcCCcchhHHHHHhcC--CcEEEEcCCHHHHHHHHcCC---CceEEecCCccchhhhhh
Q 024647 19 YPEELFKFITSKTTNHELAWDVGTGSGQAAASLSGIF--ENVIGTETSPKQIEFATKLP---NIRYELTSPAMSIAELEQ 93 (265)
Q Consensus 19 y~~~l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~---~~~~~~~~~~~~~~d~~~ 93 (265)
|.+.++.......+.+.+||.||+|.|.+++.+.++. .+|+.||+++.+++.+++.- +-.+....++++.+|...
T Consensus 89 YhE~l~h~~l~~~~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~ 168 (336)
T PLN02823 89 YHESLVHPALLHHPNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARA 168 (336)
T ss_pred HHHHHHhHHHhhCCCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHH
Confidence 5555554444444567889999999999999988864 47999999999999998621 000112223333355444
Q ss_pred c-cCCCCceeEEEeccccccC-------ChhHHHH-HHHHHhcCCCcEEEEEe
Q 024647 94 N-VAAQSTVDLVTIAQAMHWF-------DLPQFYN-QVKWVLKKPNGVIATWC 137 (265)
Q Consensus 94 ~-~~~~~~~Dlv~~~~~~~~~-------~~~~~l~-~~~~~Lk~pgG~l~~~~ 137 (265)
. ....++||+|++...-.+. -...+++ .+.+.|+ |||+++++.
T Consensus 169 ~L~~~~~~yDvIi~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~-p~Gvlv~q~ 220 (336)
T PLN02823 169 ELEKRDEKFDVIIGDLADPVEGGPCYQLYTKSFYERIVKPKLN-PGGIFVTQA 220 (336)
T ss_pred HHhhCCCCccEEEecCCCccccCcchhhccHHHHHHHHHHhcC-CCcEEEEec
Confidence 3 2345689999987432211 1235787 8999999 999998754
No 162
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.83 E-value=2.7e-08 Score=79.89 Aligned_cols=116 Identities=12% Similarity=0.042 Sum_probs=76.0
Q ss_pred hCCCCcHHHHHHHHhhC---CCCCeEEEEcCCcchhHHHHHhcCC-cEEEEcCCHHHHHHHHcC-------CCceEEecC
Q 024647 15 TRPNYPEELFKFITSKT---TNHELAWDVGTGSGQAAASLSGIFE-NVIGTETSPKQIEFATKL-------PNIRYELTS 83 (265)
Q Consensus 15 ~rp~y~~~l~~~l~~~~---~~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~-------~~~~~~~~~ 83 (265)
.||+ .+.+.+.+.+.. -++.+|||++||+|.++..++.+++ +|+++|.++.+++.+++. .++.+..
T Consensus 29 ~rpt-~~~vrea~f~~l~~~~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~-- 105 (189)
T TIGR00095 29 TRPT-TRVVRELFFNILRPEIQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVR-- 105 (189)
T ss_pred CCCc-hHHHHHHHHHHHHHhcCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEe--
Confidence 4665 455544444433 2567899999999999999999987 799999999999887652 1345555
Q ss_pred Cccchhhhhhc-c-C-CCC-ceeEEEeccccccCChhHHHHHHH--HHhcCCCcEEEEEecC
Q 024647 84 PAMSIAELEQN-V-A-AQS-TVDLVTIAQAMHWFDLPQFYNQVK--WVLKKPNGVIATWCYT 139 (265)
Q Consensus 84 ~~~~~~d~~~~-~-~-~~~-~~Dlv~~~~~~~~~~~~~~l~~~~--~~Lk~pgG~l~~~~~~ 139 (265)
+|+... . . ... .+|+|+..-....-....++..+. .+|+ ++|.+++....
T Consensus 106 -----~D~~~~l~~~~~~~~~~dvv~~DPPy~~~~~~~~l~~l~~~~~l~-~~~iiv~E~~~ 161 (189)
T TIGR00095 106 -----NSALRALKFLAKKPTFDNVIYLDPPFFNGALQALLELCENNWILE-DTVLIVVEEDR 161 (189)
T ss_pred -----hhHHHHHHHhhccCCCceEEEECcCCCCCcHHHHHHHHHHCCCCC-CCeEEEEEecC
Confidence 555332 1 1 122 478888766554333344555443 3688 88888876544
No 163
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.83 E-value=1.4e-08 Score=80.48 Aligned_cols=103 Identities=15% Similarity=0.190 Sum_probs=64.1
Q ss_pred CCCCeEEEEcCCcchhHHHHHhc--CCcEEEEcCCHHHHHHHHcC---------CCceEEecCCccchhhhhhccCCCCc
Q 024647 32 TNHELAWDVGTGSGQAAASLSGI--FENVIGTETSPKQIEFATKL---------PNIRYELTSPAMSIAELEQNVAAQST 100 (265)
Q Consensus 32 ~~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~---------~~~~~~~~~~~~~~~d~~~~~~~~~~ 100 (265)
.++.+|||+|||+|..+..++.. ..+|+.+|.++ .++.++.. .++.+...+- -. +...-....++
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~W--g~-~~~~~~~~~~~ 119 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDW--GD-ELDSDLLEPHS 119 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--T--TS--HHHHHHS-SS
T ss_pred cCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEe--cC-ccccccccccc
Confidence 45689999999999999999988 56899999999 77765531 2333333221 10 11111124568
Q ss_pred eeEEEeccccccC-ChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647 101 VDLVTIAQAMHWF-DLPQFYNQVKWVLKKPNGVIATWCYT 139 (265)
Q Consensus 101 ~Dlv~~~~~~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~~~ 139 (265)
||+|+++.+++.- ..+.+++-+.++|+ |+|.+++....
T Consensus 120 ~D~IlasDv~Y~~~~~~~L~~tl~~ll~-~~~~vl~~~~~ 158 (173)
T PF10294_consen 120 FDVILASDVLYDEELFEPLVRTLKRLLK-PNGKVLLAYKR 158 (173)
T ss_dssp BSEEEEES--S-GGGHHHHHHHHHHHBT-T-TTEEEEEE-
T ss_pred CCEEEEecccchHHHHHHHHHHHHHHhC-CCCEEEEEeCE
Confidence 9999999999877 66789999999999 89886664443
No 164
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.83 E-value=1.6e-08 Score=85.85 Aligned_cols=101 Identities=15% Similarity=0.246 Sum_probs=68.0
Q ss_pred CCeEEEEcCCcchhHH----HHHhcC------CcEEEEcCCHHHHHHHHcC--C-----Cc-------e-----------
Q 024647 34 HELAWDVGTGSGQAAA----SLSGIF------ENVIGTETSPKQIEFATKL--P-----NI-------R----------- 78 (265)
Q Consensus 34 ~~~vlDvGcG~G~~~~----~l~~~~------~~v~~vD~s~~~~~~a~~~--~-----~~-------~----------- 78 (265)
+-+|+..||+||.-.. .+.+.+ .+|+|+|+|+.+++.|++. + ++ -
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 4689999999994333 333432 2599999999999999851 1 00 0
Q ss_pred EEe-----cCCccchhhhhhccC-CCCceeEEEeccccccCCh---hHHHHHHHHHhcCCCcEEEE
Q 024647 79 YEL-----TSPAMSIAELEQNVA-AQSTVDLVTIAQAMHWFDL---PQFYNQVKWVLKKPNGVIAT 135 (265)
Q Consensus 79 ~~~-----~~~~~~~~d~~~~~~-~~~~~Dlv~~~~~~~~~~~---~~~l~~~~~~Lk~pgG~l~~ 135 (265)
+.. ..+.+...|+.+.+. +.+.||+|+|.+++.+++. .++++.+.+.|+ |||.|++
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~-pgG~L~l 260 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLK-PDGLLFA 260 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhC-CCcEEEE
Confidence 110 011222233333222 2578999999999999954 479999999999 9998876
No 165
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.83 E-value=1.9e-08 Score=86.09 Aligned_cols=86 Identities=14% Similarity=0.196 Sum_probs=65.8
Q ss_pred cHHHHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHc-------CCCceEEecCCccchhh
Q 024647 20 PEELFKFITSKT--TNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATK-------LPNIRYELTSPAMSIAE 90 (265)
Q Consensus 20 ~~~l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~-------~~~~~~~~~~~~~~~~d 90 (265)
.+.+++.+.... .++.+|||||||+|.+|..+++.+.+|+++|+++.|++.+++ ..++++.. +|
T Consensus 21 d~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~-------~D 93 (294)
T PTZ00338 21 NPLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIE-------GD 93 (294)
T ss_pred CHHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEE-------CC
Confidence 455666666543 466889999999999999999998899999999999998875 13566666 66
Q ss_pred hhhccCCCCceeEEEeccccccCC
Q 024647 91 LEQNVAAQSTVDLVTIAQAMHWFD 114 (265)
Q Consensus 91 ~~~~~~~~~~~Dlv~~~~~~~~~~ 114 (265)
+...+. ..+|.|+++...++..
T Consensus 94 al~~~~--~~~d~VvaNlPY~Ist 115 (294)
T PTZ00338 94 ALKTEF--PYFDVCVANVPYQISS 115 (294)
T ss_pred Hhhhcc--cccCEEEecCCcccCc
Confidence 655543 3689999987666543
No 166
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.81 E-value=2.7e-08 Score=80.72 Aligned_cols=107 Identities=19% Similarity=0.263 Sum_probs=74.9
Q ss_pred HHHHHhhCCCCCeEEEEcCCcchhHHHHHhcC---CcEEEEcCCHHHHHHHHcC-------CCceEEecCCccchhhhhh
Q 024647 24 FKFITSKTTNHELAWDVGTGSGQAAASLSGIF---ENVIGTETSPKQIEFATKL-------PNIRYELTSPAMSIAELEQ 93 (265)
Q Consensus 24 ~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~d~~~ 93 (265)
+..+... ..+.+||||||++|..+..+++.. .+|+.+|+++.+.+.|++. ..++++.+++.-. +..
T Consensus 37 L~~l~~~-~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~---l~~ 112 (205)
T PF01596_consen 37 LQMLVRL-TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEV---LPE 112 (205)
T ss_dssp HHHHHHH-HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHH---HHH
T ss_pred HHHHHHh-cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhh---HHH
Confidence 4334333 355789999999999999999864 4799999999999998752 4677887554111 122
Q ss_pred cc--CCCCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEe
Q 024647 94 NV--AAQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWC 137 (265)
Q Consensus 94 ~~--~~~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~ 137 (265)
+. .+.++||+|+....-. +....+..+.++|+ |||.+++-+
T Consensus 113 l~~~~~~~~fD~VFiDa~K~--~y~~y~~~~~~ll~-~ggvii~DN 155 (205)
T PF01596_consen 113 LANDGEEGQFDFVFIDADKR--NYLEYFEKALPLLR-PGGVIIADN 155 (205)
T ss_dssp HHHTTTTTSEEEEEEESTGG--GHHHHHHHHHHHEE-EEEEEEEET
T ss_pred HHhccCCCceeEEEEccccc--chhhHHHHHhhhcc-CCeEEEEcc
Confidence 21 1235899999864211 34568888999999 999998843
No 167
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.80 E-value=3.3e-08 Score=82.13 Aligned_cols=113 Identities=22% Similarity=0.263 Sum_probs=80.3
Q ss_pred CCcHHHHHHHHhh-CCCCCeEEEEcCCcchhHHHHHhcC---CcEEEEcCCHHHHHHHHc------C-CCceEEecCCcc
Q 024647 18 NYPEELFKFITSK-TTNHELAWDVGTGSGQAAASLSGIF---ENVIGTETSPKQIEFATK------L-PNIRYELTSPAM 86 (265)
Q Consensus 18 ~y~~~l~~~l~~~-~~~~~~vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~------~-~~~~~~~~~~~~ 86 (265)
-||.+..-.+... ..++++|||.|.|+|.+|..|+... .+|+..|..+...+.|++ + .++.+...
T Consensus 24 iYpkD~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~---- 99 (247)
T PF08704_consen 24 IYPKDISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHR---- 99 (247)
T ss_dssp --HHHHHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES----
T ss_pred eeCchHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEec----
Confidence 6777776655543 3688999999999999999999754 479999999999999885 2 46777774
Q ss_pred chhhhhhccC---CCCceeEEEeccccccCChhHHHHHHHHHh-cCCCcEEEEEecCCCC
Q 024647 87 SIAELEQNVA---AQSTVDLVTIAQAMHWFDLPQFYNQVKWVL-KKPNGVIATWCYTVPE 142 (265)
Q Consensus 87 ~~~d~~~~~~---~~~~~Dlv~~~~~~~~~~~~~~l~~~~~~L-k~pgG~l~~~~~~~~~ 142 (265)
|+..-.+ .+..+|.|+.... +|-.++..+.++| + |||.++++.+.-..
T Consensus 100 ---Dv~~~g~~~~~~~~~DavfLDlp----~Pw~~i~~~~~~L~~-~gG~i~~fsP~ieQ 151 (247)
T PF08704_consen 100 ---DVCEEGFDEELESDFDAVFLDLP----DPWEAIPHAKRALKK-PGGRICCFSPCIEQ 151 (247)
T ss_dssp ----GGCG--STT-TTSEEEEEEESS----SGGGGHHHHHHHE-E-EEEEEEEEESSHHH
T ss_pred ---ceecccccccccCcccEEEEeCC----CHHHHHHHHHHHHhc-CCceEEEECCCHHH
Confidence 4432222 1357999998732 6668999999999 8 99999998876433
No 168
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.79 E-value=5.1e-08 Score=86.53 Aligned_cols=118 Identities=14% Similarity=0.198 Sum_probs=77.1
Q ss_pred HHHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcC------CCceEEecCCccchhhhhh
Q 024647 22 ELFKFITSKT--TNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKL------PNIRYELTSPAMSIAELEQ 93 (265)
Q Consensus 22 ~l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~d~~~ 93 (265)
.+++.+.... .++.+|||+|||+|.++..++..+.+|+|+|+++.+++.|++. .++.+.. +|+.+
T Consensus 220 ~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~-------~d~~~ 292 (374)
T TIGR02085 220 QLYATARQWVREIPVTQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQQSAQMLGLDNLSFAA-------LDSAK 292 (374)
T ss_pred HHHHHHHHHHHhcCCCEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEE-------CCHHH
Confidence 3444444332 2457899999999999999998888999999999999988752 3566666 55544
Q ss_pred ccC-CCCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEecCCCCCChHHHHh
Q 024647 94 NVA-AQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCYTVPEVNVSVDAV 150 (265)
Q Consensus 94 ~~~-~~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~~~~~~~~~~~~~ 150 (265)
... ...+||+|+++-.--= -...+++.+. .++ |++++++.+. +.++...+..+
T Consensus 293 ~~~~~~~~~D~vi~DPPr~G-~~~~~l~~l~-~~~-p~~ivyvsc~-p~TlaRDl~~L 346 (374)
T TIGR02085 293 FATAQMSAPELVLVNPPRRG-IGKELCDYLS-QMA-PKFILYSSCN-AQTMAKDIAEL 346 (374)
T ss_pred HHHhcCCCCCEEEECCCCCC-CcHHHHHHHH-hcC-CCeEEEEEeC-HHHHHHHHHHh
Confidence 321 1245999998743110 1134555554 478 8888887653 33444444443
No 169
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.79 E-value=5.9e-08 Score=80.02 Aligned_cols=122 Identities=21% Similarity=0.262 Sum_probs=81.7
Q ss_pred CCCCcHHHHHHHHhhCC-----CCCeEEEEcCCcchhHHHHHhcCC--cEEEEcCCHHHHHHHHcC-------CCceEEe
Q 024647 16 RPNYPEELFKFITSKTT-----NHELAWDVGTGSGQAAASLSGIFE--NVIGTETSPKQIEFATKL-------PNIRYEL 81 (265)
Q Consensus 16 rp~y~~~l~~~l~~~~~-----~~~~vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~-------~~~~~~~ 81 (265)
||. +++.++++....+ ++..+||+|||+|..+..++...+ .|++||.|+.++..|.+. ..+..+.
T Consensus 127 RpE-TEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~ 205 (328)
T KOG2904|consen 127 RPE-TEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIH 205 (328)
T ss_pred Ccc-HHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEe
Confidence 555 6777888766542 345799999999999999988765 599999999999988752 2333332
Q ss_pred cCCccchhhh-hhccCCCCceeEEEeccccccC-C--------------------------hhHHHHHHHHHhcCCCcEE
Q 024647 82 TSPAMSIAEL-EQNVAAQSTVDLVTIAQAMHWF-D--------------------------LPQFYNQVKWVLKKPNGVI 133 (265)
Q Consensus 82 ~~~~~~~~d~-~~~~~~~~~~Dlv~~~~~~~~~-~--------------------------~~~~l~~~~~~Lk~pgG~l 133 (265)
...+ .|. ...+...++.|++++|-..--- | ...++.-+.|+|+ |||.+
T Consensus 206 ~~me---~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq-~gg~~ 281 (328)
T KOG2904|consen 206 NIME---SDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQ-PGGFE 281 (328)
T ss_pred cccc---cccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcc-cCCeE
Confidence 1111 222 2233566899999998632111 1 1145667889999 99999
Q ss_pred EEEecCCCC
Q 024647 134 ATWCYTVPE 142 (265)
Q Consensus 134 ~~~~~~~~~ 142 (265)
.+.....+.
T Consensus 282 ~le~~~~~~ 290 (328)
T KOG2904|consen 282 QLELVERKE 290 (328)
T ss_pred EEEeccccc
Confidence 886554333
No 170
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.75 E-value=1.9e-08 Score=78.74 Aligned_cols=85 Identities=15% Similarity=0.229 Sum_probs=62.4
Q ss_pred CCCeEEEEcCCcchhHHHHHhcCC-cEEEEcCCHHHHHHHHcC-----CCceEEecCCccchhhhhhccCCCCceeEEEe
Q 024647 33 NHELAWDVGTGSGQAAASLSGIFE-NVIGTETSPKQIEFATKL-----PNIRYELTSPAMSIAELEQNVAAQSTVDLVTI 106 (265)
Q Consensus 33 ~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~ 106 (265)
.+.+|+|+|||||.++...+-.++ +|+|+|+++++++.+++. .++.+.. +|+.+. .+.+|.++.
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~-------~dv~~~---~~~~dtvim 114 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELLGDVEFVV-------ADVSDF---RGKFDTVIM 114 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhCCceEEEE-------cchhhc---CCccceEEE
Confidence 456799999999999999999996 699999999999999863 2466666 666655 356888888
Q ss_pred cccccc-C-C-hhHHHHHHHHHhc
Q 024647 107 AQAMHW-F-D-LPQFYNQVKWVLK 127 (265)
Q Consensus 107 ~~~~~~-~-~-~~~~l~~~~~~Lk 127 (265)
|-.+-- . . --.++..+.++-+
T Consensus 115 NPPFG~~~rhaDr~Fl~~Ale~s~ 138 (198)
T COG2263 115 NPPFGSQRRHADRPFLLKALEISD 138 (198)
T ss_pred CCCCccccccCCHHHHHHHHHhhh
Confidence 765421 2 1 1246666665544
No 171
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.75 E-value=1.3e-07 Score=76.91 Aligned_cols=97 Identities=21% Similarity=0.271 Sum_probs=73.2
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcCC---cEEEEcCCHHHHHHHHcC-------CCceEEec-CCccchhhhhhcc-CCCC
Q 024647 32 TNHELAWDVGTGSGQAAASLSGIFE---NVIGTETSPKQIEFATKL-------PNIRYELT-SPAMSIAELEQNV-AAQS 99 (265)
Q Consensus 32 ~~~~~vlDvGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~-------~~~~~~~~-~~~~~~~d~~~~~-~~~~ 99 (265)
.++++|||||.+.|..+..++...+ +++.||+++++.+.|++. ..+....+ ++ ++.+. ...+
T Consensus 58 ~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gda------l~~l~~~~~~ 131 (219)
T COG4122 58 SGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDA------LDVLSRLLDG 131 (219)
T ss_pred cCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcH------HHHHHhccCC
Confidence 4668899999999999999997654 699999999999999862 22444442 22 12221 3568
Q ss_pred ceeEEEeccccccC-ChhHHHHHHHHHhcCCCcEEEEEec
Q 024647 100 TVDLVTIAQAMHWF-DLPQFYNQVKWVLKKPNGVIATWCY 138 (265)
Q Consensus 100 ~~Dlv~~~~~~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~~ 138 (265)
+||+|+.... - +.+.++..+.++|+ |||.+++-+.
T Consensus 132 ~fDliFIDad---K~~yp~~le~~~~lLr-~GGliv~DNv 167 (219)
T COG4122 132 SFDLVFIDAD---KADYPEYLERALPLLR-PGGLIVADNV 167 (219)
T ss_pred CccEEEEeCC---hhhCHHHHHHHHHHhC-CCcEEEEeec
Confidence 9999997632 2 45789999999999 9999998443
No 172
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.74 E-value=9.1e-09 Score=91.71 Aligned_cols=112 Identities=17% Similarity=0.194 Sum_probs=75.8
Q ss_pred cHHHHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhcCCcEEEE---cCCHHHHHHHHcCCCceEEecCCccchhhhhhc
Q 024647 20 PEELFKFITSKT--TNHELAWDVGTGSGQAAASLSGIFENVIGT---ETSPKQIEFATKLPNIRYELTSPAMSIAELEQN 94 (265)
Q Consensus 20 ~~~l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~~v~~v---D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~ 94 (265)
-+.+.+.+.... ..-..+||+|||+|.++..|.++.-.+..+ |..+.+++.|-++. +-...+. -.-+.+
T Consensus 102 id~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleRG-vpa~~~~-----~~s~rL 175 (506)
T PF03141_consen 102 IDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALERG-VPAMIGV-----LGSQRL 175 (506)
T ss_pred HHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhcC-cchhhhh-----hccccc
Confidence 344444444311 233568999999999999999987654333 55556666665421 2111110 112678
Q ss_pred cCCCCceeEEEecccc-ccC-ChhHHHHHHHHHhcCCCcEEEEEec
Q 024647 95 VAAQSTVDLVTIAQAM-HWF-DLPQFYNQVKWVLKKPNGVIATWCY 138 (265)
Q Consensus 95 ~~~~~~~Dlv~~~~~~-~~~-~~~~~l~~~~~~Lk~pgG~l~~~~~ 138 (265)
|+++++||+|.|+.++ .|. +-..++-++.|+|| |||.++...+
T Consensus 176 Pfp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLR-pGGyfv~S~p 220 (506)
T PF03141_consen 176 PFPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLR-PGGYFVLSGP 220 (506)
T ss_pred cCCccchhhhhcccccccchhcccceeehhhhhhc-cCceEEecCC
Confidence 9999999999998854 677 44678999999999 9999987554
No 173
>PRK04148 hypothetical protein; Provisional
Probab=98.71 E-value=2.1e-07 Score=69.67 Aligned_cols=105 Identities=17% Similarity=0.089 Sum_probs=69.6
Q ss_pred HHHHHHHhhCC--CCCeEEEEcCCcch-hHHHHHhcCCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccC-C
Q 024647 22 ELFKFITSKTT--NHELAWDVGTGSGQ-AAASLSGIFENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVA-A 97 (265)
Q Consensus 22 ~l~~~l~~~~~--~~~~vlDvGcG~G~-~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-~ 97 (265)
.+.++|....+ ++.++||||||+|. ++..|++.+.+|+++|+++..++.+++. .+.+.. +|+-+-.+ .
T Consensus 3 ~i~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~-~~~~v~-------dDlf~p~~~~ 74 (134)
T PRK04148 3 TIAEFIAENYEKGKNKKIVELGIGFYFKVAKKLKESGFDVIVIDINEKAVEKAKKL-GLNAFV-------DDLFNPNLEI 74 (134)
T ss_pred HHHHHHHHhcccccCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHh-CCeEEE-------CcCCCCCHHH
Confidence 45666666542 35789999999996 8889999999999999999999988863 456666 44322211 1
Q ss_pred CCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647 98 QSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCYT 139 (265)
Q Consensus 98 ~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~~ 139 (265)
-+.+|+|.+.- .+.....-+.++-++-|.-+++....
T Consensus 75 y~~a~liysir-----pp~el~~~~~~la~~~~~~~~i~~l~ 111 (134)
T PRK04148 75 YKNAKLIYSIR-----PPRDLQPFILELAKKINVPLIIKPLS 111 (134)
T ss_pred HhcCCEEEEeC-----CCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 24689998742 34444444444443245556665544
No 174
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=98.71 E-value=3.2e-08 Score=82.23 Aligned_cols=125 Identities=17% Similarity=0.207 Sum_probs=90.6
Q ss_pred HHHHHHHHHhhhCCCCcHHHHHHHHhhCCCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcCCCceEEecC
Q 024647 4 LFIKQAKQYAETRPNYPEELFKFITSKTTNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKLPNIRYELTS 83 (265)
Q Consensus 4 ~f~~~a~~Y~~~rp~y~~~l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~ 83 (265)
-|++.|.+....|+.-=+...+.+.. .+.+..++|+|||.|-.+..= ....++|.|.+...+.-+++........
T Consensus 17 IYd~ia~~fs~tr~~~Wp~v~qfl~~-~~~gsv~~d~gCGngky~~~~--p~~~~ig~D~c~~l~~~ak~~~~~~~~~-- 91 (293)
T KOG1331|consen 17 IYDKIATHFSATRAAPWPMVRQFLDS-QPTGSVGLDVGCGNGKYLGVN--PLCLIIGCDLCTGLLGGAKRSGGDNVCR-- 91 (293)
T ss_pred HHHHhhhhccccccCccHHHHHHHhc-cCCcceeeecccCCcccCcCC--CcceeeecchhhhhccccccCCCceeeh--
Confidence 35566666666666522344444444 355788999999998554321 1225899999999999888633223333
Q ss_pred CccchhhhhhccCCCCceeEEEeccccccCC----hhHHHHHHHHHhcCCCcEEEEEecC
Q 024647 84 PAMSIAELEQNVAAQSTVDLVTIAQAMHWFD----LPQFYNQVKWVLKKPNGVIATWCYT 139 (265)
Q Consensus 84 ~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~~----~~~~l~~~~~~Lk~pgG~l~~~~~~ 139 (265)
+|+-.+|..+.+||.+++...+||+. ...+++++.|+|+ |||...++.+.
T Consensus 92 -----ad~l~~p~~~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lr-pgg~~lvyvwa 145 (293)
T KOG1331|consen 92 -----ADALKLPFREESFDAALSIAVIHHLSTRERRERALEELLRVLR-PGGNALVYVWA 145 (293)
T ss_pred -----hhhhcCCCCCCccccchhhhhhhhhhhHHHHHHHHHHHHHHhc-CCCceEEEEeh
Confidence 78888999999999999999999983 3479999999999 99987766554
No 175
>PLN02476 O-methyltransferase
Probab=98.70 E-value=1.5e-07 Score=79.42 Aligned_cols=99 Identities=15% Similarity=0.229 Sum_probs=71.4
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcC---CcEEEEcCCHHHHHHHHcC-------CCceEEecCCccchhhhhhcc--CCCC
Q 024647 32 TNHELAWDVGTGSGQAAASLSGIF---ENVIGTETSPKQIEFATKL-------PNIRYELTSPAMSIAELEQNV--AAQS 99 (265)
Q Consensus 32 ~~~~~vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~d~~~~~--~~~~ 99 (265)
.++++|||+|+|+|..+..++... .+|+++|.++++.+.|++. .++++..+++... +..+. ...+
T Consensus 117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~---L~~l~~~~~~~ 193 (278)
T PLN02476 117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAES---LKSMIQNGEGS 193 (278)
T ss_pred cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHH---HHHHHhcccCC
Confidence 356889999999999999998753 3699999999999998752 3567777544111 11111 1236
Q ss_pred ceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEE
Q 024647 100 TVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATW 136 (265)
Q Consensus 100 ~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~ 136 (265)
+||+|+....- -.....++.+.++|+ |||.+++-
T Consensus 194 ~FD~VFIDa~K--~~Y~~y~e~~l~lL~-~GGvIV~D 227 (278)
T PLN02476 194 SYDFAFVDADK--RMYQDYFELLLQLVR-VGGVIVMD 227 (278)
T ss_pred CCCEEEECCCH--HHHHHHHHHHHHhcC-CCcEEEEe
Confidence 89999976321 134578889999999 99999873
No 176
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.70 E-value=1.1e-07 Score=79.56 Aligned_cols=113 Identities=24% Similarity=0.256 Sum_probs=80.2
Q ss_pred CcHHHHHHHHhhCCCCCeEEEEcCCcchhHHHHHhcC--CcEEEEcCCHHHHHHHHcC----------CCceEEecCCcc
Q 024647 19 YPEELFKFITSKTTNHELAWDVGTGSGQAAASLSGIF--ENVIGTETSPKQIEFATKL----------PNIRYELTSPAM 86 (265)
Q Consensus 19 y~~~l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~----------~~~~~~~~~~~~ 86 (265)
|.+.+........+.+.+||-||-|.|..++.+.++. .+|++||+++.+++.+++. ++++.+..
T Consensus 62 y~e~l~h~~~~~~~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~---- 137 (246)
T PF01564_consen 62 YHEMLVHPPLLLHPNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIG---- 137 (246)
T ss_dssp HHHHHHHHHHHHSSST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEES----
T ss_pred HHHHHhhhHhhcCCCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEh----
Confidence 3445555545455678999999999999999999876 5799999999999999862 45677764
Q ss_pred chhhhhh-ccCCCC-ceeEEEeccccccC-----ChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647 87 SIAELEQ-NVAAQS-TVDLVTIAQAMHWF-----DLPQFYNQVKWVLKKPNGVIATWCYT 139 (265)
Q Consensus 87 ~~~d~~~-~~~~~~-~~Dlv~~~~~~~~~-----~~~~~l~~~~~~Lk~pgG~l~~~~~~ 139 (265)
|... +.-..+ .||+|+....-... =...+++.+.+.|+ |||+++++...
T Consensus 138 ---Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~-~~Gv~v~~~~~ 193 (246)
T PF01564_consen 138 ---DGRKFLKETQEEKYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLK-PDGVLVLQAGS 193 (246)
T ss_dssp ---THHHHHHTSSST-EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEE-EEEEEEEEEEE
T ss_pred ---hhHHHHHhccCCcccEEEEeCCCCCCCcccccCHHHHHHHHhhcC-CCcEEEEEccC
Confidence 4322 222333 89999986533221 12479999999999 99999987643
No 177
>PLN02672 methionine S-methyltransferase
Probab=98.70 E-value=1e-07 Score=93.45 Aligned_cols=117 Identities=15% Similarity=0.200 Sum_probs=75.2
Q ss_pred CCeEEEEcCCcchhHHHHHhcCC--cEEEEcCCHHHHHHHHcCCCce---------------EEecCCccchhhhhhccC
Q 024647 34 HELAWDVGTGSGQAAASLSGIFE--NVIGTETSPKQIEFATKLPNIR---------------YELTSPAMSIAELEQNVA 96 (265)
Q Consensus 34 ~~~vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~---------------~~~~~~~~~~~d~~~~~~ 96 (265)
+.+|||+|||+|.++..+++.++ +|+|+|+|+.+++.|++....+ .....++++.+|+.+...
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 35899999999999999998764 7999999999999886421000 000123333366544321
Q ss_pred C-CCceeEEEeccc-c--------------c------c-----C--C-----------hhHHHHHHHHHhcCCCcEEEEE
Q 024647 97 A-QSTVDLVTIAQA-M--------------H------W-----F--D-----------LPQFYNQVKWVLKKPNGVIATW 136 (265)
Q Consensus 97 ~-~~~~Dlv~~~~~-~--------------~------~-----~--~-----------~~~~l~~~~~~Lk~pgG~l~~~ 136 (265)
. ...||+|+++-. + | + . + ..+.+.++.++|+ |||.+++.
T Consensus 199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~-pgG~l~lE 277 (1082)
T PLN02672 199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIK-PMGIMIFN 277 (1082)
T ss_pred ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhcc-CCCEEEEE
Confidence 1 236999999752 1 0 0 0 0 0356778889999 99999885
Q ss_pred ecCCCCCChHHH-Hhhcc
Q 024647 137 CYTVPEVNVSVD-AVFQP 153 (265)
Q Consensus 137 ~~~~~~~~~~~~-~~~~~ 153 (265)
....+ .+.+. +++.+
T Consensus 278 iG~~q--~~~v~~~l~~~ 293 (1082)
T PLN02672 278 MGGRP--GQAVCERLFER 293 (1082)
T ss_pred ECccH--HHHHHHHHHHH
Confidence 54322 34555 46654
No 178
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.68 E-value=9.3e-08 Score=82.12 Aligned_cols=119 Identities=17% Similarity=0.131 Sum_probs=90.5
Q ss_pred CCcHHHHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcCCCceEEe-cCCccch-hhhhh
Q 024647 18 NYPEELFKFITSKT--TNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKLPNIRYEL-TSPAMSI-AELEQ 93 (265)
Q Consensus 18 ~y~~~l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~-~d~~~ 93 (265)
..++++...+.+.. .++..|||==||||.+.....-.+.+++|+|++..|++-++. |.+... .+..+.. .|+..
T Consensus 180 s~~P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~--Nl~~y~i~~~~~~~~~Da~~ 257 (347)
T COG1041 180 SMDPRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKI--NLEYYGIEDYPVLKVLDATN 257 (347)
T ss_pred CcCHHHHHHHHHHhccccCCEeecCcCCccHHHHhhhhcCceEeecchHHHHHhhhhh--hhhhhCcCceeEEEeccccc
Confidence 45778888777654 567799999999999999999999999999999999999884 322221 1111111 48888
Q ss_pred ccCCCCceeEEEecccc------ccCC----hhHHHHHHHHHhcCCCcEEEEEecC
Q 024647 94 NVAAQSTVDLVTIAQAM------HWFD----LPQFYNQVKWVLKKPNGVIATWCYT 139 (265)
Q Consensus 94 ~~~~~~~~Dlv~~~~~~------~~~~----~~~~l~~~~~~Lk~pgG~l~~~~~~ 139 (265)
+|+++.++|.|++.... .-.. ...+++.+.++|+ +||.++++.+.
T Consensus 258 lpl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk-~gG~~vf~~p~ 312 (347)
T COG1041 258 LPLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLK-PGGRIVFAAPR 312 (347)
T ss_pred CCCCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhh-cCcEEEEecCC
Confidence 99888889999986522 1111 3478999999999 99999998873
No 179
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.67 E-value=1.4e-07 Score=86.78 Aligned_cols=101 Identities=15% Similarity=0.149 Sum_probs=79.2
Q ss_pred CCCeEEEEcCCcchhHHHHHhcCC--cEEEEcCCHHHHHHHHc------CCCceEEecCCccchhhhhhccCCCCceeEE
Q 024647 33 NHELAWDVGTGSGQAAASLSGIFE--NVIGTETSPKQIEFATK------LPNIRYELTSPAMSIAELEQNVAAQSTVDLV 104 (265)
Q Consensus 33 ~~~~vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~------~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv 104 (265)
....+||||||.|.++..+++..+ .++|+|++..-+..+.+ +.|+.+...++ ..+... ++++++|-|
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~----~~~~~~-~~~~sv~~i 421 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNL----DLILND-LPNNSLDGI 421 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCH----HHHHHh-cCcccccEE
Confidence 456799999999999999999987 59999999998776543 35777766433 112222 578899999
Q ss_pred EeccccccC-C--------hhHHHHHHHHHhcCCCcEEEEEecC
Q 024647 105 TIAQAMHWF-D--------LPQFYNQVKWVLKKPNGVIATWCYT 139 (265)
Q Consensus 105 ~~~~~~~~~-~--------~~~~l~~~~~~Lk~pgG~l~~~~~~ 139 (265)
+.++.-.|. . .+.+++.+.++|+ |||.+.+.+-.
T Consensus 422 ~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk-~gG~i~~~TD~ 464 (506)
T PRK01544 422 YILFPDPWIKNKQKKKRIFNKERLKILQDKLK-DNGNLVFASDI 464 (506)
T ss_pred EEECCCCCCCCCCccccccCHHHHHHHHHhcC-CCCEEEEEcCC
Confidence 999988887 2 2479999999999 99999886543
No 180
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.66 E-value=3.5e-07 Score=77.55 Aligned_cols=104 Identities=18% Similarity=0.273 Sum_probs=75.8
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcC--CcEEEEcCCHHHHHHHHcC-CCce--EEecCCccchhhhhhc-cCCCCceeEEE
Q 024647 32 TNHELAWDVGTGSGQAAASLSGIF--ENVIGTETSPKQIEFATKL-PNIR--YELTSPAMSIAELEQN-VAAQSTVDLVT 105 (265)
Q Consensus 32 ~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~-~~~~--~~~~~~~~~~~d~~~~-~~~~~~~Dlv~ 105 (265)
+.+++||-||-|.|..++.+.++. .+++.||+++.+++.+++. +... .....++++.+|..++ ....++||+|+
T Consensus 75 ~~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi 154 (282)
T COG0421 75 PNPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVII 154 (282)
T ss_pred CCCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEE
Confidence 444699999999999999999987 5899999999999999873 1111 0022233344565443 22334799999
Q ss_pred eccccccCCh------hHHHHHHHHHhcCCCcEEEEEe
Q 024647 106 IAQAMHWFDL------PQFYNQVKWVLKKPNGVIATWC 137 (265)
Q Consensus 106 ~~~~~~~~~~------~~~l~~~~~~Lk~pgG~l~~~~ 137 (265)
+...-. ..+ ..+++.+.++|+ ++|+++...
T Consensus 155 ~D~tdp-~gp~~~Lft~eFy~~~~~~L~-~~Gi~v~q~ 190 (282)
T COG0421 155 VDSTDP-VGPAEALFTEEFYEGCRRALK-EDGIFVAQA 190 (282)
T ss_pred EcCCCC-CCcccccCCHHHHHHHHHhcC-CCcEEEEec
Confidence 986544 222 689999999999 999999873
No 181
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.66 E-value=3.2e-07 Score=77.06 Aligned_cols=94 Identities=19% Similarity=0.306 Sum_probs=67.7
Q ss_pred CCeEEEEcCCcch----hHHHHHhcC-------CcEEEEcCCHHHHHHHHcC--C-------------------------
Q 024647 34 HELAWDVGTGSGQ----AAASLSGIF-------ENVIGTETSPKQIEFATKL--P------------------------- 75 (265)
Q Consensus 34 ~~~vlDvGcG~G~----~~~~l~~~~-------~~v~~vD~s~~~~~~a~~~--~------------------------- 75 (265)
+-+|+-+||+||. ++..|.+.+ -+|+|+|+|..+++.|+.. +
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y 176 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY 176 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence 5789999999994 333444444 2599999999999999851 1
Q ss_pred --------CceEEecCCccchhhhhhccCCCCceeEEEeccccccCChh---HHHHHHHHHhcCCCcEEEE
Q 024647 76 --------NIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWFDLP---QFYNQVKWVLKKPNGVIAT 135 (265)
Q Consensus 76 --------~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~~~~---~~l~~~~~~Lk~pgG~l~~ 135 (265)
.|.|... ++-.-+...+.||+|+|.+++-++|.+ +++...+..|+ |||.|++
T Consensus 177 ~v~~~ir~~V~F~~~-------NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~-~gG~Lfl 239 (268)
T COG1352 177 RVKEELRKMVRFRRH-------NLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLK-PGGLLFL 239 (268)
T ss_pred EEChHHhcccEEeec-------CCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhC-CCCEEEE
Confidence 1222221 111111134579999999999999754 69999999999 9999987
No 182
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.66 E-value=1.3e-07 Score=83.28 Aligned_cols=65 Identities=17% Similarity=0.204 Sum_probs=50.7
Q ss_pred cHHHHHHHHhhCC-CCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcC------CCceEEecCC
Q 024647 20 PEELFKFITSKTT-NHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKL------PNIRYELTSP 84 (265)
Q Consensus 20 ~~~l~~~l~~~~~-~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~ 84 (265)
.+.+++++..... .+.+|||+|||+|.++..+++...+|+|||+++.+++.+++. .++.+...++
T Consensus 183 ~~~l~~~v~~~~~~~~~~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~ 254 (353)
T TIGR02143 183 NIKMLEWACEVTQGSKGDLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSA 254 (353)
T ss_pred HHHHHHHHHHHhhcCCCcEEEEeccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCH
Confidence 3566666666543 234799999999999999999888999999999999998852 3567777443
No 183
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.65 E-value=3.2e-07 Score=76.48 Aligned_cols=97 Identities=13% Similarity=0.213 Sum_probs=70.5
Q ss_pred CCCeEEEEcCCcchhHHHHHhcC---CcEEEEcCCHHHHHHHHcC-------CCceEEecCCccchhhhhhccC---CCC
Q 024647 33 NHELAWDVGTGSGQAAASLSGIF---ENVIGTETSPKQIEFATKL-------PNIRYELTSPAMSIAELEQNVA---AQS 99 (265)
Q Consensus 33 ~~~~vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~d~~~~~~---~~~ 99 (265)
++.+|||||+++|..+..++... .+|+.+|+++...+.|++. .+++++.+++.- -+..+.. ..+
T Consensus 79 ~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e---~L~~l~~~~~~~~ 155 (247)
T PLN02589 79 NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALP---VLDQMIEDGKYHG 155 (247)
T ss_pred CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHH---HHHHHHhccccCC
Confidence 45789999999999999998754 4799999999999988752 467777755411 1111110 136
Q ss_pred ceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEE
Q 024647 100 TVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIAT 135 (265)
Q Consensus 100 ~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~ 135 (265)
+||+|+....- -.....++.+.++|+ |||.+++
T Consensus 156 ~fD~iFiDadK--~~Y~~y~~~~l~ll~-~GGviv~ 188 (247)
T PLN02589 156 TFDFIFVDADK--DNYINYHKRLIDLVK-VGGVIGY 188 (247)
T ss_pred cccEEEecCCH--HHhHHHHHHHHHhcC-CCeEEEE
Confidence 89999986320 134567888899999 9999887
No 184
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.64 E-value=1.6e-07 Score=83.07 Aligned_cols=65 Identities=20% Similarity=0.240 Sum_probs=51.5
Q ss_pred cHHHHHHHHhhCC-CCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcC------CCceEEecCC
Q 024647 20 PEELFKFITSKTT-NHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKL------PNIRYELTSP 84 (265)
Q Consensus 20 ~~~l~~~l~~~~~-~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~ 84 (265)
.+.+++++..... .+.++||++||+|.++..+++...+|+|||+++.+++.+++. .|+.+...++
T Consensus 192 ~e~l~~~v~~~~~~~~~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~ 263 (362)
T PRK05031 192 NEKMLEWALDATKGSKGDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSA 263 (362)
T ss_pred HHHHHHHHHHHhhcCCCeEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCH
Confidence 4567777766553 235799999999999999999888999999999999988752 3677777554
No 185
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=98.63 E-value=1.8e-08 Score=79.66 Aligned_cols=93 Identities=20% Similarity=0.268 Sum_probs=74.3
Q ss_pred CCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEecccccc
Q 024647 33 NHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHW 112 (265)
Q Consensus 33 ~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~ 112 (265)
.+.++||+|+|.|..|..++..+.+|.++|.|..|+.+.++ .+.+.... + ++...+-.+|+|.|...+.-
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~feevyATElS~tMr~rL~k-k~ynVl~~--------~-ew~~t~~k~dli~clNlLDR 181 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPTFEEVYATELSWTMRDRLKK-KNYNVLTE--------I-EWLQTDVKLDLILCLNLLDR 181 (288)
T ss_pred CCeeEEeccCCCcchhhhhcchHHHHHHHHhhHHHHHHHhh-cCCceeee--------h-hhhhcCceeehHHHHHHHHh
Confidence 35789999999999999999999999999999999999986 34444331 1 12123346999999988866
Q ss_pred C-ChhHHHHHHHHHhcCCCcEEEE
Q 024647 113 F-DLPQFYNQVKWVLKKPNGVIAT 135 (265)
Q Consensus 113 ~-~~~~~l~~~~~~Lk~pgG~l~~ 135 (265)
. ++-++++.+..+|+|.+|.+++
T Consensus 182 c~~p~kLL~Di~~vl~psngrviv 205 (288)
T KOG3987|consen 182 CFDPFKLLEDIHLVLAPSNGRVIV 205 (288)
T ss_pred hcChHHHHHHHHHHhccCCCcEEE
Confidence 5 8999999999999933898776
No 186
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.61 E-value=1.9e-07 Score=74.44 Aligned_cols=124 Identities=17% Similarity=0.170 Sum_probs=72.7
Q ss_pred HHHHHHHhhC--C--CCCeEEEEcCCcchhHHHHHhcC---CcEEEEcCCHHHHHHHHcCCCceEEecCCccc--hhhhh
Q 024647 22 ELFKFITSKT--T--NHELAWDVGTGSGQAAASLSGIF---ENVIGTETSPKQIEFATKLPNIRYELTSPAMS--IAELE 92 (265)
Q Consensus 22 ~l~~~l~~~~--~--~~~~vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~--~~d~~ 92 (265)
+|.+.+..+. . ++.+|||+||++|.++..+.++. .+|+|+|+.+. ...+++.+.+++.... ...+.
T Consensus 8 KL~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----~~~~~~~~i~~d~~~~~~~~~i~ 82 (181)
T PF01728_consen 8 KLYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----DPLQNVSFIQGDITNPENIKDIR 82 (181)
T ss_dssp HHHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----GS-TTEEBTTGGGEEEEHSHHGG
T ss_pred HHHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEecccc-----ccccceeeeecccchhhHHHhhh
Confidence 5666666554 2 34899999999999999999998 57999999887 2223343333222110 01222
Q ss_pred hc-cCCCCceeEEEeccccccC-----Ch-------hHHHHHHHHHhcCCCcEEEEEecCCCCCChHHHHhhc
Q 024647 93 QN-VAAQSTVDLVTIAQAMHWF-----DL-------PQFYNQVKWVLKKPNGVIATWCYTVPEVNVSVDAVFQ 152 (265)
Q Consensus 93 ~~-~~~~~~~Dlv~~~~~~~~~-----~~-------~~~l~~~~~~Lk~pgG~l~~~~~~~~~~~~~~~~~~~ 152 (265)
.. ....+.+|+|+|..+.... |. ...+.-+...|+ |||.+++-.+..... ..+...+.
T Consensus 83 ~~~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~-~gG~~v~K~~~~~~~-~~~~~~l~ 153 (181)
T PF01728_consen 83 KLLPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLK-PGGTFVIKVFKGPEI-EELIYLLK 153 (181)
T ss_dssp GSHGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHC-TTEEEEEEESSSTTS-HHHHHHHH
T ss_pred hhccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhc-CCCEEEEEeccCccH-HHHHHHHH
Confidence 22 1123689999998854433 21 134556678899 999999877765554 34444333
No 187
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.59 E-value=1.3e-07 Score=77.98 Aligned_cols=88 Identities=14% Similarity=0.141 Sum_probs=62.6
Q ss_pred HHHHHHHHhh--CCCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcC-CCceEEecCCccchhhhhhccCC
Q 024647 21 EELFKFITSK--TTNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKL-PNIRYELTSPAMSIAELEQNVAA 97 (265)
Q Consensus 21 ~~l~~~l~~~--~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-~~~~~~~~~~~~~~~d~~~~~~~ 97 (265)
+.+++.|... .++++.|||+|.|||.+|..|.+.+++|+++|+++.|+++..++ .+... ..-.++..+|+-..++
T Consensus 44 p~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~gtp~-~~kLqV~~gD~lK~d~- 121 (315)
T KOG0820|consen 44 PLVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQGTPK-SGKLQVLHGDFLKTDL- 121 (315)
T ss_pred HHHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHhcCCCc-cceeeEEecccccCCC-
Confidence 3445555444 36789999999999999999999999999999999999988753 11111 1122223377766543
Q ss_pred CCceeEEEeccccc
Q 024647 98 QSTVDLVTIAQAMH 111 (265)
Q Consensus 98 ~~~~Dlv~~~~~~~ 111 (265)
..||.++++....
T Consensus 122 -P~fd~cVsNlPyq 134 (315)
T KOG0820|consen 122 -PRFDGCVSNLPYQ 134 (315)
T ss_pred -cccceeeccCCcc
Confidence 3699999976544
No 188
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.58 E-value=4.3e-07 Score=72.76 Aligned_cols=120 Identities=16% Similarity=0.213 Sum_probs=83.1
Q ss_pred hCCCCcHHHHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhcCC---cEEEEcCCHHHHHHHHcCCCceEEecCCccchh
Q 024647 15 TRPNYPEELFKFITSKT--TNHELAWDVGTGSGQAAASLSGIFE---NVIGTETSPKQIEFATKLPNIRYELTSPAMSIA 89 (265)
Q Consensus 15 ~rp~y~~~l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~ 89 (265)
.|+.| ++++....+. .++++|+|+||-+|..++.+++... +|+|+|+.|. ...+++.+++++.+-. .
T Consensus 27 SRAa~--KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~-----~~~~~V~~iq~d~~~~-~ 98 (205)
T COG0293 27 SRAAY--KLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPM-----KPIPGVIFLQGDITDE-D 98 (205)
T ss_pred chHHH--HHHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccc-----ccCCCceEEeeeccCc-c
Confidence 46666 7777766653 5789999999999999999998764 3999999776 3457888888654321 0
Q ss_pred hhhhcc--CCCCceeEEEecc----ccccC-Chh-------HHHHHHHHHhcCCCcEEEEEecCCCCC
Q 024647 90 ELEQNV--AAQSTVDLVTIAQ----AMHWF-DLP-------QFYNQVKWVLKKPNGVIATWCYTVPEV 143 (265)
Q Consensus 90 d~~~~~--~~~~~~Dlv~~~~----~~~~~-~~~-------~~l~~~~~~Lk~pgG~l~~~~~~~~~~ 143 (265)
..+++. +...++|+|++.. .-+|. |.. .++.-+..+|+ |||.+++-.+.....
T Consensus 99 ~~~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~-~~G~fv~K~fqg~~~ 165 (205)
T COG0293 99 TLEKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLK-PGGSFVAKVFQGEDF 165 (205)
T ss_pred HHHHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeC-CCCeEEEEEEeCCCH
Confidence 111111 3445689999865 33444 533 46677788999 999999877664443
No 189
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.55 E-value=2.4e-07 Score=73.95 Aligned_cols=123 Identities=15% Similarity=0.111 Sum_probs=79.0
Q ss_pred hhhCCCCcHHHHHH----HHhhCCCCCeEEEEcCCcchhHHHHHhcCC-cEEEEcCCHHHHHHHHcC-------CCceEE
Q 024647 13 AETRPNYPEELFKF----ITSKTTNHELAWDVGTGSGQAAASLSGIFE-NVIGTETSPKQIEFATKL-------PNIRYE 80 (265)
Q Consensus 13 ~~~rp~y~~~l~~~----l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~-------~~~~~~ 80 (265)
...||+ ++.+-+. |....-++.+|||+-||+|.++...+.+++ +|+.||.++..++..++. ..+...
T Consensus 19 ~~~RPT-~drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~ 97 (183)
T PF03602_consen 19 DNTRPT-TDRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVI 97 (183)
T ss_dssp -TS-SS-SHHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEE
T ss_pred CCcCCC-cHHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeee
Confidence 357887 5555444 443313568999999999999999999987 699999999999987752 124555
Q ss_pred ecCCccchhhhhhccCCCCceeEEEeccccccCC-hhHHHHHHH--HHhcCCCcEEEEEecCC
Q 024647 81 LTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWFD-LPQFYNQVK--WVLKKPNGVIATWCYTV 140 (265)
Q Consensus 81 ~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~~-~~~~l~~~~--~~Lk~pgG~l~~~~~~~ 140 (265)
..++. ..+........+||+|++.-....-. ...++..+. .+|+ ++|.+++.....
T Consensus 98 ~~d~~---~~l~~~~~~~~~fDiIflDPPY~~~~~~~~~l~~l~~~~~l~-~~~~ii~E~~~~ 156 (183)
T PF03602_consen 98 KGDAF---KFLLKLAKKGEKFDIIFLDPPYAKGLYYEELLELLAENNLLN-EDGLIIIEHSKK 156 (183)
T ss_dssp ESSHH---HHHHHHHHCTS-EEEEEE--STTSCHHHHHHHHHHHHTTSEE-EEEEEEEEEETT
T ss_pred ccCHH---HHHHhhcccCCCceEEEECCCcccchHHHHHHHHHHHCCCCC-CCEEEEEEecCC
Confidence 53321 11222222467899999987666554 367777776 7899 899999866543
No 190
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.53 E-value=6.7e-07 Score=79.38 Aligned_cols=109 Identities=14% Similarity=0.112 Sum_probs=77.4
Q ss_pred CCCcHHHHHHHHhhCC---CCCeEEEEcCCcchhHHHHHhcCC--cEEEEcCCHHHHHHHHcC------CCceEEecCCc
Q 024647 17 PNYPEELFKFITSKTT---NHELAWDVGTGSGQAAASLSGIFE--NVIGTETSPKQIEFATKL------PNIRYELTSPA 85 (265)
Q Consensus 17 p~y~~~l~~~l~~~~~---~~~~vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~ 85 (265)
.....++...+..... +..+|||++||+|..+..++.... +|+++|+++..++.+++. .++.+..
T Consensus 38 ~~~nrdl~~~v~~~~~~~~~~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~---- 113 (382)
T PRK04338 38 MELNRDISVLVLRAFGPKLPRESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFN---- 113 (382)
T ss_pred ccchhhHHHHHHHHHHhhcCCCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEh----
Confidence 3445566555555432 235899999999999999987654 799999999999988752 2233333
Q ss_pred cchhhhhhccCCCCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEE
Q 024647 86 MSIAELEQNVAAQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATW 136 (265)
Q Consensus 86 ~~~~d~~~~~~~~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~ 136 (265)
+|+..+....+.||+|++.-. -.+..+++.+.+.++ +||.+.+.
T Consensus 114 ---~Da~~~l~~~~~fD~V~lDP~---Gs~~~~l~~al~~~~-~~gilyvS 157 (382)
T PRK04338 114 ---KDANALLHEERKFDVVDIDPF---GSPAPFLDSAIRSVK-RGGLLCVT 157 (382)
T ss_pred ---hhHHHHHhhcCCCCEEEECCC---CCcHHHHHHHHHHhc-CCCEEEEE
Confidence 666554211457999998631 234678888888899 99999886
No 191
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.53 E-value=4.7e-07 Score=75.36 Aligned_cols=85 Identities=12% Similarity=0.066 Sum_probs=65.5
Q ss_pred cHHHHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcC----CCceEEecCCccchhhhhh
Q 024647 20 PEELFKFITSKT--TNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKL----PNIRYELTSPAMSIAELEQ 93 (265)
Q Consensus 20 ~~~l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~----~~~~~~~~~~~~~~~d~~~ 93 (265)
.+.+++.+.... .++++|||||+|.|.+|..|++++.+|+++|+++.+++..++. .|+..+. +|+-.
T Consensus 15 d~~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~~~n~~vi~-------~DaLk 87 (259)
T COG0030 15 DKNVIDKIVEAANISPGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFAPYDNLTVIN-------GDALK 87 (259)
T ss_pred CHHHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhcccccceEEEe-------Cchhc
Confidence 345566666554 3568999999999999999999999999999999999988763 4566666 77766
Q ss_pred ccCCCC-ceeEEEeccccc
Q 024647 94 NVAAQS-TVDLVTIAQAMH 111 (265)
Q Consensus 94 ~~~~~~-~~Dlv~~~~~~~ 111 (265)
.+++.- .++.|+++...+
T Consensus 88 ~d~~~l~~~~~vVaNlPY~ 106 (259)
T COG0030 88 FDFPSLAQPYKVVANLPYN 106 (259)
T ss_pred CcchhhcCCCEEEEcCCCc
Confidence 665532 578899885433
No 192
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.51 E-value=3.4e-07 Score=73.95 Aligned_cols=102 Identities=20% Similarity=0.184 Sum_probs=77.4
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcCC-cEEEEcCCHHHHHHHHcC--------CCceEEecCCccchhhhhhc--cCCCCc
Q 024647 32 TNHELAWDVGTGSGQAAASLSGIFE-NVIGTETSPKQIEFATKL--------PNIRYELTSPAMSIAELEQN--VAAQST 100 (265)
Q Consensus 32 ~~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~--------~~~~~~~~~~~~~~~d~~~~--~~~~~~ 100 (265)
+.+.+|||...|-|..+...+++++ +|+.+|.+|..++.|+-. .++..+. +|..+. .+++++
T Consensus 133 ~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iil-------GD~~e~V~~~~D~s 205 (287)
T COG2521 133 KRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIIL-------GDAYEVVKDFDDES 205 (287)
T ss_pred ccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEec-------ccHHHHHhcCCccc
Confidence 3578999999999999999999999 899999999999988743 2344444 565543 268899
Q ss_pred eeEEEeccc-cc---cCChhHHHHHHHHHhcCCCcEEEEEecCCC
Q 024647 101 VDLVTIAQA-MH---WFDLPQFYNQVKWVLKKPNGVIATWCYTVP 141 (265)
Q Consensus 101 ~Dlv~~~~~-~~---~~~~~~~l~~~~~~Lk~pgG~l~~~~~~~~ 141 (265)
||+|+-.-. +. .+=...+..+++|+|+ |||.++.+...+.
T Consensus 206 fDaIiHDPPRfS~AgeLYseefY~El~RiLk-rgGrlFHYvG~Pg 249 (287)
T COG2521 206 FDAIIHDPPRFSLAGELYSEEFYRELYRILK-RGGRLFHYVGNPG 249 (287)
T ss_pred cceEeeCCCccchhhhHhHHHHHHHHHHHcC-cCCcEEEEeCCCC
Confidence 999985321 10 1123479999999999 9999988766543
No 193
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=6.3e-07 Score=71.26 Aligned_cols=111 Identities=19% Similarity=0.294 Sum_probs=81.0
Q ss_pred CcHHHHHHHHhhCCCCCeEEEEcCCcchhHHHHHhc----CCcEEEEcCCHHHHHHHHcC--C-------CceEEecCCc
Q 024647 19 YPEELFKFITSKTTNHELAWDVGTGSGQAAASLSGI----FENVIGTETSPKQIEFATKL--P-------NIRYELTSPA 85 (265)
Q Consensus 19 y~~~l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~----~~~v~~vD~s~~~~~~a~~~--~-------~~~~~~~~~~ 85 (265)
....+++.|..++.++-+.||+|.|+|.++..++.. +....|||.-++.++.+++. . -..+..+...
T Consensus 68 mha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ 147 (237)
T KOG1661|consen 68 MHATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELS 147 (237)
T ss_pred HHHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceE
Confidence 345678888888889999999999999999988753 33459999999999998752 0 1112222333
Q ss_pred cchhhhhhccCCCCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEE
Q 024647 86 MSIAELEQNVAAQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIAT 135 (265)
Q Consensus 86 ~~~~d~~~~~~~~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~ 135 (265)
++.+|-.....+..+||.|.+.. +....-+++...|+ +||.+++
T Consensus 148 ivvGDgr~g~~e~a~YDaIhvGA-----aa~~~pq~l~dqL~-~gGrlli 191 (237)
T KOG1661|consen 148 IVVGDGRKGYAEQAPYDAIHVGA-----AASELPQELLDQLK-PGGRLLI 191 (237)
T ss_pred EEeCCccccCCccCCcceEEEcc-----CccccHHHHHHhhc-cCCeEEE
Confidence 33466555555778999999873 33467788888899 8998887
No 194
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=98.46 E-value=9.1e-07 Score=75.85 Aligned_cols=93 Identities=20% Similarity=0.272 Sum_probs=74.5
Q ss_pred CCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHc-C-CCceEEecCCccchhhh-hhccCCCCceeEEEecccc
Q 024647 34 HELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATK-L-PNIRYELTSPAMSIAEL-EQNVAAQSTVDLVTIAQAM 110 (265)
Q Consensus 34 ~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~-~-~~~~~~~~~~~~~~~d~-~~~~~~~~~~Dlv~~~~~~ 110 (265)
-...+|+|.|.|..+..+..++++|-+++++...+-.++. + +++..+. +|+ ++. | +-|+|+..+++
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~~gV~~v~-------gdmfq~~--P--~~daI~mkWiL 246 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLAPGVEHVA-------GDMFQDT--P--KGDAIWMKWIL 246 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhcCCcceec-------ccccccC--C--CcCeEEEEeec
Confidence 4678999999999999999999999999999998876553 5 5666655 443 333 3 35799999999
Q ss_pred ccC-C--hhHHHHHHHHHhcCCCcEEEEEec
Q 024647 111 HWF-D--LPQFYNQVKWVLKKPNGVIATWCY 138 (265)
Q Consensus 111 ~~~-~--~~~~l~~~~~~Lk~pgG~l~~~~~ 138 (265)
|.. | ..++|++|+..|+ |||.+++...
T Consensus 247 hdwtDedcvkiLknC~~sL~-~~GkIiv~E~ 276 (342)
T KOG3178|consen 247 HDWTDEDCVKILKNCKKSLP-PGGKIIVVEN 276 (342)
T ss_pred ccCChHHHHHHHHHHHHhCC-CCCEEEEEec
Confidence 755 4 5689999999999 9999988665
No 195
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.46 E-value=3e-07 Score=77.96 Aligned_cols=99 Identities=21% Similarity=0.205 Sum_probs=67.4
Q ss_pred CCCeEEEEcCCcchhHHHHHhcCC-cEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEeccccc
Q 024647 33 NHELAWDVGTGSGQAAASLSGIFE-NVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMH 111 (265)
Q Consensus 33 ~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~ 111 (265)
.++.|||+|||+|.++...++.++ +|.+||.| +|.+.|+++-..+.....+.++.+.++++.+| +.+|+|++--.-.
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLP-Ek~DviISEPMG~ 254 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAGAKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDIELP-EKVDVIISEPMGY 254 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhCcceEEEEehh-HHHHHHHHHHhcCCccceEEEccCccccccCc-hhccEEEeccchh
Confidence 467899999999999999999987 69999986 57888876311111111222233666777554 6899999876444
Q ss_pred cCChhH---HHHHHHHHhcCCCcEEE
Q 024647 112 WFDLPQ---FYNQVKWVLKKPNGVIA 134 (265)
Q Consensus 112 ~~~~~~---~l~~~~~~Lk~pgG~l~ 134 (265)
.+-.++ ..-.+++.|+ |+|...
T Consensus 255 mL~NERMLEsYl~Ark~l~-P~GkMf 279 (517)
T KOG1500|consen 255 MLVNERMLESYLHARKWLK-PNGKMF 279 (517)
T ss_pred hhhhHHHHHHHHHHHhhcC-CCCccc
Confidence 332233 3335579999 999865
No 196
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.45 E-value=1.8e-07 Score=75.40 Aligned_cols=97 Identities=16% Similarity=0.228 Sum_probs=65.6
Q ss_pred HHHhhCCCCCeEEEEcCCcchhHHHHHh--cCCcEEEEcCCHHHHHHHHcC-------CCceEEecCCccchhhhhhccC
Q 024647 26 FITSKTTNHELAWDVGTGSGQAAASLSG--IFENVIGTETSPKQIEFATKL-------PNIRYELTSPAMSIAELEQNVA 96 (265)
Q Consensus 26 ~l~~~~~~~~~vlDvGcG~G~~~~~l~~--~~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~d~~~~~~ 96 (265)
++.....++.+|+|+.||-|.++..+++ ....|+++|++|..++.+++. ..+.... +|...+..
T Consensus 94 Ri~~~v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~-------~D~~~~~~ 166 (200)
T PF02475_consen 94 RIANLVKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVIN-------GDAREFLP 166 (200)
T ss_dssp HHHTC--TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEE-------S-GGG---
T ss_pred HHHhcCCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEc-------CCHHHhcC
Confidence 4555567889999999999999999998 566799999999999987751 2344455 67666643
Q ss_pred CCCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEE
Q 024647 97 AQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIA 134 (265)
Q Consensus 97 ~~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~ 134 (265)
.+.+|.|+++..- ....++..+.++++ +||++-
T Consensus 167 -~~~~drvim~lp~---~~~~fl~~~~~~~~-~~g~ih 199 (200)
T PF02475_consen 167 -EGKFDRVIMNLPE---SSLEFLDAALSLLK-EGGIIH 199 (200)
T ss_dssp -TT-EEEEEE--TS---SGGGGHHHHHHHEE-EEEEEE
T ss_pred -ccccCEEEECChH---HHHHHHHHHHHHhc-CCcEEE
Confidence 7889999987421 23468889999999 888763
No 197
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.45 E-value=1.5e-06 Score=76.71 Aligned_cols=107 Identities=12% Similarity=0.150 Sum_probs=79.0
Q ss_pred HHHhhCCCCCeEEEEcCCcchhHHHHHhcCC-cEEEEcCCHHHHHHHHcC--------CCceEEecCCccchhhhhh---
Q 024647 26 FITSKTTNHELAWDVGTGSGQAAASLSGIFE-NVIGTETSPKQIEFATKL--------PNIRYELTSPAMSIAELEQ--- 93 (265)
Q Consensus 26 ~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~--------~~~~~~~~~~~~~~~d~~~--- 93 (265)
++..... +++||++=|=||.++...+..++ +|+.||.|...++-|++. ..+.+++ +|+-+
T Consensus 211 ~l~~~~~-GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~-------~Dvf~~l~ 282 (393)
T COG1092 211 ALGELAA-GKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIV-------GDVFKWLR 282 (393)
T ss_pred HHhhhcc-CCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeeh-------hhHHHHHH
Confidence 3444444 78999999999999999999998 899999999999999862 2245555 55422
Q ss_pred -ccCCCCceeEEEecc-ccc------c--C-ChhHHHHHHHHHhcCCCcEEEEEecCCC
Q 024647 94 -NVAAQSTVDLVTIAQ-AMH------W--F-DLPQFYNQVKWVLKKPNGVIATWCYTVP 141 (265)
Q Consensus 94 -~~~~~~~~Dlv~~~~-~~~------~--~-~~~~~l~~~~~~Lk~pgG~l~~~~~~~~ 141 (265)
..-...+||+|+..- ++- | . |..+++..+.++|+ |||++++.+....
T Consensus 283 ~~~~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~-pgG~l~~~s~~~~ 340 (393)
T COG1092 283 KAERRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLA-PGGTLVTSSCSRH 340 (393)
T ss_pred HHHhcCCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcC-CCCEEEEEecCCc
Confidence 223445899999854 111 1 1 34578889999999 9999998766543
No 198
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.44 E-value=2.4e-06 Score=65.25 Aligned_cols=96 Identities=22% Similarity=0.317 Sum_probs=68.8
Q ss_pred EEEEcCCcchhHHHHHhcC---CcEEEEcCCHHHHHHHHcCC---C---ceEEecCCccchhhhhh--ccCCC-CceeEE
Q 024647 37 AWDVGTGSGQAAASLSGIF---ENVIGTETSPKQIEFATKLP---N---IRYELTSPAMSIAELEQ--NVAAQ-STVDLV 104 (265)
Q Consensus 37 vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~---~---~~~~~~~~~~~~~d~~~--~~~~~-~~~Dlv 104 (265)
++|+|||+|..+ .+.... ..++++|+++.++..++... . +.+.. .+... .++.. ..+|++
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~d~~ 123 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVV-------ADALGGVLPFEDSASFDLV 123 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEE-------eccccCCCCCCCCCceeEE
Confidence 999999999976 444333 37899999999999855321 1 24444 34333 55555 489999
Q ss_pred EeccccccCChhHHHHHHHHHhcCCCcEEEEEecCCC
Q 024647 105 TIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCYTVP 141 (265)
Q Consensus 105 ~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~~~~ 141 (265)
.+....|+.+....+.++.++|+ |+|.+++......
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~l~-~~g~~~~~~~~~~ 159 (257)
T COG0500 124 ISLLVLHLLPPAKALRELLRVLK-PGGRLVLSDLLRD 159 (257)
T ss_pred eeeeehhcCCHHHHHHHHHHhcC-CCcEEEEEeccCC
Confidence 55556666677889999999999 9999988666533
No 199
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=98.42 E-value=2.7e-06 Score=72.31 Aligned_cols=108 Identities=15% Similarity=0.119 Sum_probs=66.3
Q ss_pred CCCeEEEEcCCcchhHHHHHhcC---CcEEEEcCCHHHHHHHHcCC-CceEEecCCccchhhhhhccCCCCceeEEEecc
Q 024647 33 NHELAWDVGTGSGQAAASLSGIF---ENVIGTETSPKQIEFATKLP-NIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQ 108 (265)
Q Consensus 33 ~~~~vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~-~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~ 108 (265)
.+.+|||+|||+|..+.++.+.+ .+++++|.|+.|++.++.+. +..-.. ...+. .....-..+..+.|+|++++
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~-~~~~~-~~~~~~~~~~~~~DLvi~s~ 110 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNR-NAEWR-RVLYRDFLPFPPDDLVIASY 110 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccc-cchhh-hhhhcccccCCCCcEEEEeh
Confidence 45789999999999888777654 46999999999999887631 110000 00000 11111011223349999999
Q ss_pred ccccCChh---HHHHHHHHHhcCCCcEEEEEecCCCCCCh
Q 024647 109 AMHWFDLP---QFYNQVKWVLKKPNGVIATWCYTVPEVNV 145 (265)
Q Consensus 109 ~~~~~~~~---~~l~~~~~~Lk~pgG~l~~~~~~~~~~~~ 145 (265)
++..+... .+++.+.+.+. +.|+++.++.+.-..
T Consensus 111 ~L~EL~~~~r~~lv~~LW~~~~---~~LVlVEpGt~~Gf~ 147 (274)
T PF09243_consen 111 VLNELPSAARAELVRSLWNKTA---PVLVLVEPGTPAGFR 147 (274)
T ss_pred hhhcCCchHHHHHHHHHHHhcc---CcEEEEcCCChHHHH
Confidence 99888333 34555555444 388888887554433
No 200
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=98.38 E-value=1.8e-06 Score=74.25 Aligned_cols=96 Identities=11% Similarity=-0.002 Sum_probs=70.0
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEeccccc
Q 024647 32 TNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMH 111 (265)
Q Consensus 32 ~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~ 111 (265)
.+++++||+||++|.+|..+++++.+|++||.++ |-......+++.....+. +...+ +.+++|+++|..+
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~-l~~~L~~~~~V~h~~~d~------fr~~p-~~~~vDwvVcDmv-- 279 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGP-MAQSLMDTGQVEHLRADG------FKFRP-PRKNVDWLVCDMV-- 279 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcCCEEEEEechh-cCHhhhCCCCEEEEeccC------cccCC-CCCCCCEEEEecc--
Confidence 4678999999999999999999999999999655 445555557788877432 22222 2678999999854
Q ss_pred cCChhHHHHHHHHHhcCCC-cEEEEEecC
Q 024647 112 WFDLPQFYNQVKWVLKKPN-GVIATWCYT 139 (265)
Q Consensus 112 ~~~~~~~l~~~~~~Lk~pg-G~l~~~~~~ 139 (265)
..|..+++-+.+.|. .| ..-++++..
T Consensus 280 -e~P~rva~lm~~Wl~-~g~cr~aIfnLK 306 (357)
T PRK11760 280 -EKPARVAELMAQWLV-NGWCREAIFNLK 306 (357)
T ss_pred -cCHHHHHHHHHHHHh-cCcccEEEEEEE
Confidence 256788888899987 44 223444544
No 201
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.37 E-value=6.2e-07 Score=67.14 Aligned_cols=88 Identities=18% Similarity=0.243 Sum_probs=63.3
Q ss_pred CCCCcHHHHHHHHhhCC--CCCeEEEEcCCcchhHHHHHhcCC-cEEEEcCCHHHHHHHHcC-----CCceEEecCCccc
Q 024647 16 RPNYPEELFKFITSKTT--NHELAWDVGTGSGQAAASLSGIFE-NVIGTETSPKQIEFATKL-----PNIRYELTSPAMS 87 (265)
Q Consensus 16 rp~y~~~l~~~l~~~~~--~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~~~ 87 (265)
||.....++..+.+... .++.++|+|||.|.+..+.+-..+ .|+|+|++|+.++.+++. -++++.+
T Consensus 29 ~p~iAasM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLq------ 102 (185)
T KOG3420|consen 29 RPHIAASMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQ------ 102 (185)
T ss_pred cHHHHHHHHHHHHhhhccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhhhhheee------
Confidence 55555556666655443 678899999999999977765555 499999999999998863 2445555
Q ss_pred hhhhhhccCCCCceeEEEecccc
Q 024647 88 IAELEQNVAAQSTVDLVTIAQAM 110 (265)
Q Consensus 88 ~~d~~~~~~~~~~~Dlv~~~~~~ 110 (265)
.|+.++-+..+.||.++.+..+
T Consensus 103 -cdildle~~~g~fDtaviNppF 124 (185)
T KOG3420|consen 103 -CDILDLELKGGIFDTAVINPPF 124 (185)
T ss_pred -eeccchhccCCeEeeEEecCCC
Confidence 4555554566789998887654
No 202
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.37 E-value=1.2e-05 Score=67.47 Aligned_cols=99 Identities=17% Similarity=0.240 Sum_probs=77.3
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcCC----cEEEEcCCHHHHHHHHc------CCCc-eEEecCCccchhhhhhccCCCCc
Q 024647 32 TNHELAWDVGTGSGQAAASLSGIFE----NVIGTETSPKQIEFATK------LPNI-RYELTSPAMSIAELEQNVAAQST 100 (265)
Q Consensus 32 ~~~~~vlDvGcG~G~~~~~l~~~~~----~v~~vD~s~~~~~~a~~------~~~~-~~~~~~~~~~~~d~~~~~~~~~~ 100 (265)
..+-+||||.||.|.......+..+ +|+..|.|+..++..+. +.++ +|.+.++ -|.+++..-...
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dA----fd~~~l~~l~p~ 209 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDA----FDRDSLAALDPA 209 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCC----CCHhHhhccCCC
Confidence 4567899999999999988876654 49999999999998765 3565 8888776 444444433445
Q ss_pred eeEEEeccccccC-Chh---HHHHHHHHHhcCCCcEEEE
Q 024647 101 VDLVTIAQAMHWF-DLP---QFYNQVKWVLKKPNGVIAT 135 (265)
Q Consensus 101 ~Dlv~~~~~~~~~-~~~---~~l~~~~~~Lk~pgG~l~~ 135 (265)
.++++++..+..| |.. ..++-+.+++. |||.++.
T Consensus 210 P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~-pgG~lIy 247 (311)
T PF12147_consen 210 PTLAIVSGLYELFPDNDLVRRSLAGLARALE-PGGYLIY 247 (311)
T ss_pred CCEEEEecchhhCCcHHHHHHHHHHHHHHhC-CCcEEEE
Confidence 7999999888888 532 47888999999 9999986
No 203
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.36 E-value=3.7e-06 Score=67.00 Aligned_cols=91 Identities=22% Similarity=0.295 Sum_probs=70.7
Q ss_pred eEEEEcCCcchhHHHHHhcCC--cEEEEcCCHHHHHHHHc------CCCceEEecCCccchhhhhhccCCCCceeEEEec
Q 024647 36 LAWDVGTGSGQAAASLSGIFE--NVIGTETSPKQIEFATK------LPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIA 107 (265)
Q Consensus 36 ~vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~------~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~ 107 (265)
+++|||+|.|.-+..++=..+ +++.+|.+..-+...+. ++|+.... +.+++ +...++||+|++.
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~-------~R~E~-~~~~~~fd~v~aR 122 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVIN-------GRAEE-PEYRESFDVVTAR 122 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEE-------S-HHH-TTTTT-EEEEEEE
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEE-------eeecc-cccCCCccEEEee
Confidence 899999999999999886665 59999999998876653 57888888 45565 4467799999997
Q ss_pred cccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647 108 QAMHWFDLPQFYNQVKWVLKKPNGVIATWCY 138 (265)
Q Consensus 108 ~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~ 138 (265)
-. .+...++.-+...|+ +||.++++-.
T Consensus 123 Av---~~l~~l~~~~~~~l~-~~G~~l~~KG 149 (184)
T PF02527_consen 123 AV---APLDKLLELARPLLK-PGGRLLAYKG 149 (184)
T ss_dssp SS---SSHHHHHHHHGGGEE-EEEEEEEEES
T ss_pred hh---cCHHHHHHHHHHhcC-CCCEEEEEcC
Confidence 43 256788999999999 9999887543
No 204
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.36 E-value=2e-06 Score=73.42 Aligned_cols=89 Identities=15% Similarity=0.168 Sum_probs=64.3
Q ss_pred hCCCCcHHHHHHHHhhCCCCCeEEEEcCCcchhHHHHHhcC---CcEEEEcCCHHHHHHHHcC----CCceEEecCCccc
Q 024647 15 TRPNYPEELFKFITSKTTNHELAWDVGTGSGQAAASLSGIF---ENVIGTETSPKQIEFATKL----PNIRYELTSPAMS 87 (265)
Q Consensus 15 ~rp~y~~~l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~----~~~~~~~~~~~~~ 87 (265)
+.|...+++++.+. ..++..+||++||.|..|..+++.+ .+|+|+|.++.|++.+++. .++.++..+.
T Consensus 3 H~pVll~Evl~~L~--~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f--- 77 (296)
T PRK00050 3 HIPVLLDEVVDALA--IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNF--- 77 (296)
T ss_pred CccccHHHHHHhhC--CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCH---
Confidence 56777777777774 2456799999999999999999886 4799999999999998753 2566666443
Q ss_pred hhhhhhccCC-CCceeEEEeccc
Q 024647 88 IAELEQNVAA-QSTVDLVTIAQA 109 (265)
Q Consensus 88 ~~d~~~~~~~-~~~~Dlv~~~~~ 109 (265)
.++...... ..++|.|++...
T Consensus 78 -~~l~~~l~~~~~~vDgIl~DLG 99 (296)
T PRK00050 78 -SNLKEVLAEGLGKVDGILLDLG 99 (296)
T ss_pred -HHHHHHHHcCCCccCEEEECCC
Confidence 222222111 127999999873
No 205
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.35 E-value=3.9e-06 Score=75.46 Aligned_cols=115 Identities=22% Similarity=0.326 Sum_probs=80.4
Q ss_pred cHHHHHHHHhhCC--CCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHc------CCCceEEecCCccchhhh
Q 024647 20 PEELFKFITSKTT--NHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATK------LPNIRYELTSPAMSIAEL 91 (265)
Q Consensus 20 ~~~l~~~l~~~~~--~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~------~~~~~~~~~~~~~~~~d~ 91 (265)
.+.|+++...... +.+++||+=||.|.++..|+++..+|+|+|+++++++.|++ ..|+.|..+ ++
T Consensus 278 ~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~-------~a 350 (432)
T COG2265 278 AEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAANGIDNVEFIAG-------DA 350 (432)
T ss_pred HHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeC-------CH
Confidence 4556666666553 55789999999999999999999999999999999999875 356788874 44
Q ss_pred hhccC---CCCceeEEEeccccccCChh------HHHHHHHHHhcCCCcEEEEEecCCCCCChHHHHhh
Q 024647 92 EQNVA---AQSTVDLVTIAQAMHWFDLP------QFYNQVKWVLKKPNGVIATWCYTVPEVNVSVDAVF 151 (265)
Q Consensus 92 ~~~~~---~~~~~Dlv~~~~~~~~~~~~------~~l~~~~~~Lk~pgG~l~~~~~~~~~~~~~~~~~~ 151 (265)
++... ....+|.|+. ||+ .+++.+.+ ++ |..++++++ ++.++...+..+.
T Consensus 351 e~~~~~~~~~~~~d~Vvv-------DPPR~G~~~~~lk~l~~-~~-p~~IvYVSC-NP~TlaRDl~~L~ 409 (432)
T COG2265 351 EEFTPAWWEGYKPDVVVV-------DPPRAGADREVLKQLAK-LK-PKRIVYVSC-NPATLARDLAILA 409 (432)
T ss_pred HHHhhhccccCCCCEEEE-------CCCCCCCCHHHHHHHHh-cC-CCcEEEEeC-CHHHHHHHHHHHH
Confidence 44432 2347899996 443 45555555 45 677777755 4445444444433
No 206
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.34 E-value=7.7e-06 Score=63.71 Aligned_cols=121 Identities=18% Similarity=0.301 Sum_probs=79.2
Q ss_pred HHHhhhCCCCcHHHHHHHHhhC-----CCCCeEEEEcCCcchhHHHHHhcCC---cEEEEcCCHHHHHHHHc-----CCC
Q 024647 10 KQYAETRPNYPEELFKFITSKT-----TNHELAWDVGTGSGQAAASLSGIFE---NVIGTETSPKQIEFATK-----LPN 76 (265)
Q Consensus 10 ~~Y~~~rp~y~~~l~~~l~~~~-----~~~~~vlDvGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~-----~~~ 76 (265)
+.|.-.-.+| -+++.|.... ..+..++|||||+|..+..|++... -+.++|++|.+++...+ ..+
T Consensus 17 dVYEPaEDTF--lLlDaLekd~~eL~~~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~ 94 (209)
T KOG3191|consen 17 DVYEPAEDTF--LLLDALEKDAAELKGHNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVH 94 (209)
T ss_pred hccCccchhh--HHHHHHHHHHHHHhhcCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCc
Confidence 4444444444 4555554322 1357799999999999999987643 48899999999886443 123
Q ss_pred ceEEecCCccchhhhhhccCCCCceeEEEecccc----------ccCC------------hhHHHHHHHHHhcCCCcEEE
Q 024647 77 IRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAM----------HWFD------------LPQFYNQVKWVLKKPNGVIA 134 (265)
Q Consensus 77 ~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~----------~~~~------------~~~~l~~~~~~Lk~pgG~l~ 134 (265)
+..++ .|+..- +..+++|+++.+-.. +|++ ..+++..+-.+|. |.|.++
T Consensus 95 ~~~V~-------tdl~~~-l~~~~VDvLvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLS-p~Gv~Y 165 (209)
T KOG3191|consen 95 IDVVR-------TDLLSG-LRNESVDVLVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILS-PRGVFY 165 (209)
T ss_pred cceee-------hhHHhh-hccCCccEEEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcC-cCceEE
Confidence 34444 555443 345899999986522 2221 2357777888999 999999
Q ss_pred EEecCCC
Q 024647 135 TWCYTVP 141 (265)
Q Consensus 135 ~~~~~~~ 141 (265)
+......
T Consensus 166 lv~~~~N 172 (209)
T KOG3191|consen 166 LVALRAN 172 (209)
T ss_pred eeehhhc
Confidence 8776533
No 207
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=98.33 E-value=7.6e-07 Score=78.06 Aligned_cols=111 Identities=21% Similarity=0.269 Sum_probs=83.9
Q ss_pred HHhhCCCCCeEEEEcCCcchhHHHHHhcC-CcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEE
Q 024647 27 ITSKTTNHELAWDVGTGSGQAAASLSGIF-ENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVT 105 (265)
Q Consensus 27 l~~~~~~~~~vlDvGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~ 105 (265)
+...+.+...++|+|||-|...+.++... .+++|+|.++..+..+....--..+.....++..++.+.++++++||.+.
T Consensus 104 l~~~~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~ 183 (364)
T KOG1269|consen 104 LRESCFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVR 183 (364)
T ss_pred HhhcCcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEE
Confidence 33344566678999999999999998765 68999999999888776421000000011112378888889999999999
Q ss_pred eccccccC-ChhHHHHHHHHHhcCCCcEEEEEec
Q 024647 106 IAQAMHWF-DLPQFYNQVKWVLKKPNGVIATWCY 138 (265)
Q Consensus 106 ~~~~~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~~ 138 (265)
+..+..+. +...++++++|+++ |||.+++..+
T Consensus 184 ~ld~~~~~~~~~~~y~Ei~rv~k-pGG~~i~~e~ 216 (364)
T KOG1269|consen 184 FLEVVCHAPDLEKVYAEIYRVLK-PGGLFIVKEW 216 (364)
T ss_pred EEeecccCCcHHHHHHHHhcccC-CCceEEeHHH
Confidence 99977766 99999999999999 9999998444
No 208
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.32 E-value=7.5e-07 Score=76.91 Aligned_cols=77 Identities=16% Similarity=0.212 Sum_probs=52.1
Q ss_pred CCCeEEEEcCCcchhHHHHHhc--CCcEEEEcCCHHHHHHHHcC----C----CceEEe-cCCccchhhhh-hccCCCCc
Q 024647 33 NHELAWDVGTGSGQAAASLSGI--FENVIGTETSPKQIEFATKL----P----NIRYEL-TSPAMSIAELE-QNVAAQST 100 (265)
Q Consensus 33 ~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~----~----~~~~~~-~~~~~~~~d~~-~~~~~~~~ 100 (265)
+..++||||||+|.+...++.+ ..+++|+|+++.+++.|++. + .+.+.. .+. .++. .+..+.+.
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~----~~i~~~i~~~~~~ 189 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDS----KAIFKGIIHKNER 189 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccch----hhhhhcccccCCc
Confidence 4578999999999877777654 45899999999999999852 1 222221 111 1111 11124568
Q ss_pred eeEEEeccccccC
Q 024647 101 VDLVTIAQAMHWF 113 (265)
Q Consensus 101 ~Dlv~~~~~~~~~ 113 (265)
||+|+|+-.+|--
T Consensus 190 fDlivcNPPf~~s 202 (321)
T PRK11727 190 FDATLCNPPFHAS 202 (321)
T ss_pred eEEEEeCCCCcCc
Confidence 9999999987754
No 209
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.31 E-value=1.5e-05 Score=63.06 Aligned_cols=118 Identities=16% Similarity=0.064 Sum_probs=80.7
Q ss_pred hhCCCCcHHHHHHHHhhC----CCCCeEEEEcCCcchhHHHHHhcCC-cEEEEcCCHHHHHHHHcC-------CCceEEe
Q 024647 14 ETRPNYPEELFKFITSKT----TNHELAWDVGTGSGQAAASLSGIFE-NVIGTETSPKQIEFATKL-------PNIRYEL 81 (265)
Q Consensus 14 ~~rp~y~~~l~~~l~~~~----~~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~-------~~~~~~~ 81 (265)
..||+ .+.+-+.+-+.+ -.+.++||+=+|+|.++...+.+++ .++.||.+...+...++. .+.....
T Consensus 21 ~~RPT-~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~ 99 (187)
T COG0742 21 GTRPT-TDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLR 99 (187)
T ss_pred CcCCC-chHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEe
Confidence 36887 455544444333 3468899999999999999999987 699999999999988752 3344444
Q ss_pred cCCccchhhhhhc-c--CCCCceeEEEeccccccC--ChhHHHHH--HHHHhcCCCcEEEEEecCC
Q 024647 82 TSPAMSIAELEQN-V--AAQSTVDLVTIAQAMHWF--DLPQFYNQ--VKWVLKKPNGVIATWCYTV 140 (265)
Q Consensus 82 ~~~~~~~~d~~~~-~--~~~~~~Dlv~~~~~~~~~--~~~~~l~~--~~~~Lk~pgG~l~~~~~~~ 140 (265)
.|+... . ...++||+|+..-.+++- +....+.. -...|+ |+|.+++.....
T Consensus 100 -------~da~~~L~~~~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~-~~~~iv~E~~~~ 157 (187)
T COG0742 100 -------NDALRALKQLGTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLK-PGALIVVEHDKD 157 (187)
T ss_pred -------ecHHHHHHhcCCCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcC-CCcEEEEEeCCC
Confidence 333322 1 122359999998887743 33444444 456799 999999866543
No 210
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.26 E-value=6.6e-06 Score=65.49 Aligned_cols=103 Identities=19% Similarity=0.213 Sum_probs=68.8
Q ss_pred CcHHHHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhcCC-----------cEEEEcCCHHHHHHHHcC-------CCce
Q 024647 19 YPEELFKFITSKT--TNHELAWDVGTGSGQAAASLSGIFE-----------NVIGTETSPKQIEFATKL-------PNIR 78 (265)
Q Consensus 19 y~~~l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~-----------~v~~vD~s~~~~~~a~~~-------~~~~ 78 (265)
..+.+...|.... .++..+||--||+|++....+..+. +++|+|+++.+++.++.. ..+.
T Consensus 12 L~~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~ 91 (179)
T PF01170_consen 12 LRPTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYID 91 (179)
T ss_dssp S-HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEE
T ss_pred CCHHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceE
Confidence 3455655555544 4667899999999999988765433 277999999999988752 1244
Q ss_pred EEecCCccchhhhhhccCCCCceeEEEeccccccC-C--------hhHHHHHHHHHhcCC
Q 024647 79 YELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWF-D--------LPQFYNQVKWVLKKP 129 (265)
Q Consensus 79 ~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~-~--------~~~~l~~~~~~Lk~p 129 (265)
+.+ .|+..+++.++++|.|+++...--- . ...+++++.++|+ +
T Consensus 92 ~~~-------~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~-~ 143 (179)
T PF01170_consen 92 FIQ-------WDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLK-P 143 (179)
T ss_dssp EEE---------GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHST-T
T ss_pred EEe-------cchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCC-C
Confidence 555 7788887777899999998754322 2 1257888899999 7
No 211
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.23 E-value=1.5e-05 Score=72.51 Aligned_cols=100 Identities=14% Similarity=0.260 Sum_probs=71.3
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcC---CcEEEEcCCHHHHHHHHc------CCCceEEecCCccchhhhhhcc-CCCCce
Q 024647 32 TNHELAWDVGTGSGQAAASLSGIF---ENVIGTETSPKQIEFATK------LPNIRYELTSPAMSIAELEQNV-AAQSTV 101 (265)
Q Consensus 32 ~~~~~vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~------~~~~~~~~~~~~~~~~d~~~~~-~~~~~~ 101 (265)
.++.+|||++||+|.=|..+++.. ..|+++|+++..++.+++ ..|+.... .|...+. ...+.|
T Consensus 112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~-------~D~~~~~~~~~~~f 184 (470)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTH-------FDGRVFGAALPETF 184 (470)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEe-------Cchhhhhhhchhhc
Confidence 467899999999999999999875 369999999999887764 24555544 3433332 223579
Q ss_pred eEEEeccc------c--------ccC--C-------hhHHHHHHHHHhcCCCcEEEEEecC
Q 024647 102 DLVTIAQA------M--------HWF--D-------LPQFYNQVKWVLKKPNGVIATWCYT 139 (265)
Q Consensus 102 Dlv~~~~~------~--------~~~--~-------~~~~l~~~~~~Lk~pgG~l~~~~~~ 139 (265)
|.|++.-. + .|. + ....+..+.++|| |||+|+..+..
T Consensus 185 D~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~Lk-pGG~LVYSTCT 244 (470)
T PRK11933 185 DAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALK-PGGTLVYSTCT 244 (470)
T ss_pred CeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcC-CCcEEEEECCC
Confidence 99995331 1 121 0 1357889999999 99999887765
No 212
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.23 E-value=4.3e-06 Score=73.65 Aligned_cols=65 Identities=20% Similarity=0.239 Sum_probs=49.0
Q ss_pred cHHHHHHHHhhCC-CCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHc------CCCceEEecCC
Q 024647 20 PEELFKFITSKTT-NHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATK------LPNIRYELTSP 84 (265)
Q Consensus 20 ~~~l~~~l~~~~~-~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~------~~~~~~~~~~~ 84 (265)
.+.+++++....+ .+..+||+-||.|.++..|++.+.+|+|||+++.+++.|+. ..|+.|...++
T Consensus 182 ~~~l~~~~~~~l~~~~~~vlDlycG~G~fsl~la~~~~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~ 253 (352)
T PF05958_consen 182 NEKLYEQALEWLDLSKGDVLDLYCGVGTFSLPLAKKAKKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDA 253 (352)
T ss_dssp HHHHHHHHHHHCTT-TTEEEEES-TTTCCHHHHHCCSSEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--S
T ss_pred HHHHHHHHHHHhhcCCCcEEEEeecCCHHHHHHHhhCCeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeec
Confidence 4566777666654 23479999999999999999999999999999999998875 36888888655
No 213
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=98.19 E-value=6.8e-06 Score=69.50 Aligned_cols=99 Identities=13% Similarity=0.098 Sum_probs=71.0
Q ss_pred cHHHHHHHHhhCC--CCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHc----CCCceEEecCCccchhhhhh
Q 024647 20 PEELFKFITSKTT--NHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATK----LPNIRYELTSPAMSIAELEQ 93 (265)
Q Consensus 20 ~~~l~~~l~~~~~--~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~----~~~~~~~~~~~~~~~~d~~~ 93 (265)
.+.+++.+.+... ++..|||+|+|+|.+|..|.+.+.+++++|+++.+++..++ .+++..+. +|+..
T Consensus 15 ~~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~-------~D~l~ 87 (262)
T PF00398_consen 15 DPNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLAKHLKERFASNPNVEVIN-------GDFLK 87 (262)
T ss_dssp HHHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHHHHHHHHCTTCSSEEEEE-------S-TTT
T ss_pred CHHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhcccCcceeecCcHhHHHHHHHHhhhcccceeee-------cchhc
Confidence 4566666666543 67899999999999999999999999999999999998876 35777777 66666
Q ss_pred ccCCC---CceeEEEeccccccCChhHHHHHHHHHhc
Q 024647 94 NVAAQ---STVDLVTIAQAMHWFDLPQFYNQVKWVLK 127 (265)
Q Consensus 94 ~~~~~---~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk 127 (265)
+..+. +...+|+++... .-...++.++...-+
T Consensus 88 ~~~~~~~~~~~~~vv~NlPy--~is~~il~~ll~~~~ 122 (262)
T PF00398_consen 88 WDLYDLLKNQPLLVVGNLPY--NISSPILRKLLELYR 122 (262)
T ss_dssp SCGGGHCSSSEEEEEEEETG--TGHHHHHHHHHHHGG
T ss_pred cccHHhhcCCceEEEEEecc--cchHHHHHHHhhccc
Confidence 65443 456677776443 222346666665434
No 214
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.12 E-value=4.1e-05 Score=66.21 Aligned_cols=102 Identities=11% Similarity=0.154 Sum_probs=68.7
Q ss_pred HhhCCCCCeEEEEcCCcchhHHHHHhcC------CcEEEEcCCHHHHHHHHc------CCCceEEecCCccchhhhhh--
Q 024647 28 TSKTTNHELAWDVGTGSGQAAASLSGIF------ENVIGTETSPKQIEFATK------LPNIRYELTSPAMSIAELEQ-- 93 (265)
Q Consensus 28 ~~~~~~~~~vlDvGcG~G~~~~~l~~~~------~~v~~vD~s~~~~~~a~~------~~~~~~~~~~~~~~~~d~~~-- 93 (265)
....+++..++|+|||.|.=+..|.+.. ..++++|+|..+++.+.. .+.+.+...- +|..+
T Consensus 71 a~~i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~-----gdy~~~l 145 (319)
T TIGR03439 71 AASIPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLL-----GTYDDGL 145 (319)
T ss_pred HHhcCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEE-----ecHHHHH
Confidence 3344666789999999999888876543 359999999999987653 2445443211 44332
Q ss_pred --ccC--CCCceeEEEe-ccccccCChh---HHHHHHHH-HhcCCCcEEEE
Q 024647 94 --NVA--AQSTVDLVTI-AQAMHWFDLP---QFYNQVKW-VLKKPNGVIAT 135 (265)
Q Consensus 94 --~~~--~~~~~Dlv~~-~~~~~~~~~~---~~l~~~~~-~Lk~pgG~l~~ 135 (265)
++. ......+++. ..++..+++. .+++++.+ .|+ |||.|++
T Consensus 146 ~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~-~~d~lLi 195 (319)
T TIGR03439 146 AWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALS-PSDSFLI 195 (319)
T ss_pred hhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCC-CCCEEEE
Confidence 221 1223455554 4588888654 58889999 999 8998876
No 215
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=98.11 E-value=3.5e-05 Score=62.37 Aligned_cols=120 Identities=23% Similarity=0.230 Sum_probs=79.9
Q ss_pred HHhhhCCCCcHHHHHHHHhhC-----CCCCeEEEEcCCcchhHHHHHhcCC---cEEEEcCCHHH----HHHHHcCCCce
Q 024647 11 QYAETRPNYPEELFKFITSKT-----TNHELAWDVGTGSGQAAASLSGIFE---NVIGTETSPKQ----IEFATKLPNIR 78 (265)
Q Consensus 11 ~Y~~~rp~y~~~l~~~l~~~~-----~~~~~vlDvGcG~G~~~~~l~~~~~---~v~~vD~s~~~----~~~a~~~~~~~ 78 (265)
.|..+.| |-.+|...+.... .++.+||-+|+.+|+...++++... .|.+||.|+.. +..|++++|+-
T Consensus 47 eYR~W~P-~RSKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIi 125 (229)
T PF01269_consen 47 EYRVWNP-FRSKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNII 125 (229)
T ss_dssp EEEEE-T-TT-HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEE
T ss_pred ceeecCc-hhhHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCcee
Confidence 3555666 4678888876543 4678999999999999999998754 69999999954 55677789987
Q ss_pred EEecCCccchhhhhhccCCCCceeEEEeccccccCChh-HHHHHHHHHhcCCCcEEEEEec
Q 024647 79 YELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWFDLP-QFYNQVKWVLKKPNGVIATWCY 138 (265)
Q Consensus 79 ~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~~~~-~~l~~~~~~Lk~pgG~l~~~~~ 138 (265)
=+..+++ --+....--+.+|+|++.-+ ..+.. -++.++..-|| +||.+++..-
T Consensus 126 PIl~DAr----~P~~Y~~lv~~VDvI~~DVa--Qp~Qa~I~~~Na~~fLk-~gG~~~i~iK 179 (229)
T PF01269_consen 126 PILEDAR----HPEKYRMLVEMVDVIFQDVA--QPDQARIAALNARHFLK-PGGHLIISIK 179 (229)
T ss_dssp EEES-TT----SGGGGTTTS--EEEEEEE-S--STTHHHHHHHHHHHHEE-EEEEEEEEEE
T ss_pred eeeccCC----ChHHhhcccccccEEEecCC--ChHHHHHHHHHHHhhcc-CCcEEEEEEe
Confidence 6664431 11222223358999998744 12333 46778888999 9999987543
No 216
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.08 E-value=1.4e-05 Score=67.92 Aligned_cols=109 Identities=16% Similarity=0.231 Sum_probs=71.6
Q ss_pred HHHHhhCCCCCeEEEEcCCcchhHHHHHhcCC-cEEEEcCCHHHHHHHHcC--------CCceEEecCCccchhhhhhcc
Q 024647 25 KFITSKTTNHELAWDVGTGSGQAAASLSGIFE-NVIGTETSPKQIEFATKL--------PNIRYELTSPAMSIAELEQNV 95 (265)
Q Consensus 25 ~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~--------~~~~~~~~~~~~~~~d~~~~~ 95 (265)
.++..+ .++.+|||+=|=||.++...+..++ +|+.||.|..+++.+++. ..++++..++. ..+..+.
T Consensus 116 ~~v~~~-~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf---~~l~~~~ 191 (286)
T PF10672_consen 116 KWVRKY-AKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVF---KFLKRLK 191 (286)
T ss_dssp HHHHHH-CTTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HH---HHHHHHH
T ss_pred HHHHHH-cCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHH---HHHHHHh
Confidence 344444 4568999999999999999988887 699999999999988751 35667774431 1112221
Q ss_pred CCCCceeEEEecc-ccc--cC----ChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647 96 AAQSTVDLVTIAQ-AMH--WF----DLPQFYNQVKWVLKKPNGVIATWCYT 139 (265)
Q Consensus 96 ~~~~~~Dlv~~~~-~~~--~~----~~~~~l~~~~~~Lk~pgG~l~~~~~~ 139 (265)
..++||+|++.- ++- -+ +..+++..+.++|+ |||.|++....
T Consensus 192 -~~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~-~gG~l~~~scs 240 (286)
T PF10672_consen 192 -KGGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLK-PGGLLLTCSCS 240 (286)
T ss_dssp -HTT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEE-EEEEEEEEE--
T ss_pred -cCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcC-CCCEEEEEcCC
Confidence 346899999854 111 11 34568889999999 99998865554
No 217
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.07 E-value=4e-05 Score=62.13 Aligned_cols=96 Identities=17% Similarity=0.266 Sum_probs=71.8
Q ss_pred CCCeEEEEcCCcchhHHHHHhcC---CcEEEEcCCHHHHHHHHc-------CCCceEEecCCccchhhhhhcc--CCCCc
Q 024647 33 NHELAWDVGTGSGQAAASLSGIF---ENVIGTETSPKQIEFATK-------LPNIRYELTSPAMSIAELEQNV--AAQST 100 (265)
Q Consensus 33 ~~~~vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~-------~~~~~~~~~~~~~~~~d~~~~~--~~~~~ 100 (265)
.++++||||.=||..+..++... .+|+++|+++...+.+.+ ...++++++++. ..+.++- .+.++
T Consensus 73 ~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~---esLd~l~~~~~~~t 149 (237)
T KOG1663|consen 73 NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPAL---ESLDELLADGESGT 149 (237)
T ss_pred CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchh---hhHHHHHhcCCCCc
Confidence 44789999999999999888665 479999999998887654 246888887652 2222221 25679
Q ss_pred eeEEEeccccccC-ChhHHHHHHHHHhcCCCcEEEE
Q 024647 101 VDLVTIAQAMHWF-DLPQFYNQVKWVLKKPNGVIAT 135 (265)
Q Consensus 101 ~Dlv~~~~~~~~~-~~~~~l~~~~~~Lk~pgG~l~~ 135 (265)
||+++.. ||- +....+.++.++|| +||++++
T Consensus 150 fDfaFvD---adK~nY~~y~e~~l~Llr-~GGvi~~ 181 (237)
T KOG1663|consen 150 FDFAFVD---ADKDNYSNYYERLLRLLR-VGGVIVV 181 (237)
T ss_pred eeEEEEc---cchHHHHHHHHHHHhhcc-cccEEEE
Confidence 9999975 333 33478999999999 9999987
No 218
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=98.07 E-value=2e-05 Score=63.44 Aligned_cols=102 Identities=18% Similarity=0.267 Sum_probs=71.8
Q ss_pred cHHHHHHHHhhCC------CCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhh
Q 024647 20 PEELFKFITSKTT------NHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQ 93 (265)
Q Consensus 20 ~~~l~~~l~~~~~------~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~ 93 (265)
..-+++||..... ..-++|||||=+......-...+ +|+.||+++. .+.| .+ .|+-+
T Consensus 32 SK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s~~~~f-dvt~IDLns~-------~~~I--~q-------qDFm~ 94 (219)
T PF11968_consen 32 SKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACSTSGWF-DVTRIDLNSQ-------HPGI--LQ-------QDFME 94 (219)
T ss_pred hHHHHHHhhhhccccccccccceEEeecccCCCCcccccCce-eeEEeecCCC-------CCCc--ee-------ecccc
Confidence 5778899887642 12589999996543333322233 4999999873 1222 23 45555
Q ss_pred ccC---CCCceeEEEeccccccC-Chh---HHHHHHHHHhcCCCcE-----EEEEecC
Q 024647 94 NVA---AQSTVDLVTIAQAMHWF-DLP---QFYNQVKWVLKKPNGV-----IATWCYT 139 (265)
Q Consensus 94 ~~~---~~~~~Dlv~~~~~~~~~-~~~---~~l~~~~~~Lk~pgG~-----l~~~~~~ 139 (265)
.|+ +.+.||+|.++.++.++ ++. ..+..+.+.|+ |+|. |+++.+.
T Consensus 95 rplp~~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~-~~g~~~~~~LFlVlP~ 151 (219)
T PF11968_consen 95 RPLPKNESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLK-PPGLSLFPSLFLVLPL 151 (219)
T ss_pred CCCCCCcccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhC-CCCccCcceEEEEeCc
Confidence 554 46789999999999999 554 58999999999 9999 8777664
No 219
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.05 E-value=1.8e-05 Score=68.63 Aligned_cols=111 Identities=12% Similarity=0.145 Sum_probs=80.8
Q ss_pred HHHhhCCCCCeEEEEcCCcchhHHHHHhcCCc-EEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEE
Q 024647 26 FITSKTTNHELAWDVGTGSGQAAASLSGIFEN-VIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLV 104 (265)
Q Consensus 26 ~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv 104 (265)
++.....++.+|||.=||-|-++..+++.+.. |+++|++|..++.+++....+-....++...+|........+.+|-|
T Consensus 181 Rva~~v~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrI 260 (341)
T COG2520 181 RVAELVKEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRI 260 (341)
T ss_pred HHHhhhcCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEE
Confidence 34445567899999999999999999999875 99999999999988762111111111222337777665444789999
Q ss_pred EeccccccCChhHHHHHHHHHhcCCCcEEEEEecCC
Q 024647 105 TIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCYTV 140 (265)
Q Consensus 105 ~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~~~ 140 (265)
+.+..- +...++..+.+.++ +||++-+....+
T Consensus 261 im~~p~---~a~~fl~~A~~~~k-~~g~iHyy~~~~ 292 (341)
T COG2520 261 IMGLPK---SAHEFLPLALELLK-DGGIIHYYEFVP 292 (341)
T ss_pred EeCCCC---cchhhHHHHHHHhh-cCcEEEEEeccc
Confidence 987421 44679999999999 899988766653
No 220
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=97.97 E-value=1.1e-05 Score=62.82 Aligned_cols=66 Identities=20% Similarity=0.335 Sum_probs=45.7
Q ss_pred eEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcC-------CCceEEecCCccchhhhhhcc--CCCCc-eeEEE
Q 024647 36 LAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKL-------PNIRYELTSPAMSIAELEQNV--AAQST-VDLVT 105 (265)
Q Consensus 36 ~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~d~~~~~--~~~~~-~Dlv~ 105 (265)
.|+|+.||.|.-+.++++.+.+|++||+++..++.++.. .++.++. +|+.+.. ..... +|+|+
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~-------gD~~~~~~~~~~~~~~D~vF 74 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLECAKHNAEVYGVADNIDFIC-------GDFFELLKRLKSNKIFDVVF 74 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEE-------S-HHHHGGGB------SEEE
T ss_pred EEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEe-------CCHHHHHhhccccccccEEE
Confidence 689999999999999999999999999999999998852 4678887 4444431 12222 79999
Q ss_pred ecc
Q 024647 106 IAQ 108 (265)
Q Consensus 106 ~~~ 108 (265)
++-
T Consensus 75 lSP 77 (163)
T PF09445_consen 75 LSP 77 (163)
T ss_dssp E--
T ss_pred ECC
Confidence 865
No 221
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.96 E-value=0.00012 Score=59.51 Aligned_cols=115 Identities=24% Similarity=0.265 Sum_probs=78.4
Q ss_pred HHHhhhCCCCcHHHHHHH-Hh------hCCC-CCeEEEEcCCcchhHHHHHhcCC--cEEEEcCCHHHHHHHHc------
Q 024647 10 KQYAETRPNYPEELFKFI-TS------KTTN-HELAWDVGTGSGQAAASLSGIFE--NVIGTETSPKQIEFATK------ 73 (265)
Q Consensus 10 ~~Y~~~rp~y~~~l~~~l-~~------~~~~-~~~vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~------ 73 (265)
..|+=..++-+.++...- .. +... +.+++|||+|.|.-+..++=.++ +|+-+|....-+...+.
T Consensus 36 ~~~NLt~~~~~~e~~~rHilDSl~~~~~~~~~~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~ 115 (215)
T COG0357 36 KAYNLTAIRDPEELWQRHILDSLVLLPYLDGKAKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELG 115 (215)
T ss_pred HhcCCCCCCCHHHHHHHHHHHHhhhhhcccccCCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhC
Confidence 334446666566665442 11 1123 58999999999999998874443 59999999988776654
Q ss_pred CCCceEEecCCccchhhhhhccCCCCc-eeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEE
Q 024647 74 LPNIRYELTSPAMSIAELEQNVAAQST-VDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATW 136 (265)
Q Consensus 74 ~~~~~~~~~~~~~~~~d~~~~~~~~~~-~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~ 136 (265)
++|+.++. +.+|+... ... ||+|++... .+...++.-+...++ +||.++.+
T Consensus 116 L~nv~i~~-------~RaE~~~~-~~~~~D~vtsRAv---a~L~~l~e~~~pllk-~~g~~~~~ 167 (215)
T COG0357 116 LENVEIVH-------GRAEEFGQ-EKKQYDVVTSRAV---ASLNVLLELCLPLLK-VGGGFLAY 167 (215)
T ss_pred CCCeEEeh-------hhHhhccc-ccccCcEEEeehc---cchHHHHHHHHHhcc-cCCcchhh
Confidence 47788888 55666642 223 999999743 145567778888889 88887653
No 222
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=97.95 E-value=0.0001 Score=59.11 Aligned_cols=101 Identities=18% Similarity=0.144 Sum_probs=77.6
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcCC-cEEEEcCCHHHHHHHHc-----CCCceEEecCCccchhhhhhccCCCCceeEEE
Q 024647 32 TNHELAWDVGTGSGQAAASLSGIFE-NVIGTETSPKQIEFATK-----LPNIRYELTSPAMSIAELEQNVAAQSTVDLVT 105 (265)
Q Consensus 32 ~~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~-----~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~ 105 (265)
.++.+||.||-|.|.....+.++-+ +-+.||..|..++..+. ..||....+.- .|.-.. ++++.||-|.
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~W----eDvl~~-L~d~~FDGI~ 174 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRW----EDVLNT-LPDKHFDGIY 174 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecch----Hhhhcc-ccccCcceeE
Confidence 5778999999999999999988765 57789999999999885 35666666443 232222 5788899999
Q ss_pred eccc-cccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647 106 IAQA-MHWFDLPQFYNQVKWVLKKPNGVIATWCY 138 (265)
Q Consensus 106 ~~~~-~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~ 138 (265)
-... -|+-|.-.+.+.+.|+|| |+|++-..+.
T Consensus 175 yDTy~e~yEdl~~~hqh~~rLLk-P~gv~SyfNg 207 (271)
T KOG1709|consen 175 YDTYSELYEDLRHFHQHVVRLLK-PEGVFSYFNG 207 (271)
T ss_pred eechhhHHHHHHHHHHHHhhhcC-CCceEEEecC
Confidence 7664 344477789999999999 9999876544
No 223
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=97.91 E-value=7.3e-05 Score=67.19 Aligned_cols=65 Identities=28% Similarity=0.374 Sum_probs=52.4
Q ss_pred HHHHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHc------CCCceEEecCCc
Q 024647 21 EELFKFITSKT--TNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATK------LPNIRYELTSPA 85 (265)
Q Consensus 21 ~~l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~------~~~~~~~~~~~~ 85 (265)
+.+...+.+.. +.+..++|+-||||.++..+++...+|+||++++..++.|+. ..|.+|+++.++
T Consensus 369 evLys~i~e~~~l~~~k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE 441 (534)
T KOG2187|consen 369 EVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAE 441 (534)
T ss_pred HHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhccccceeeeecChhhcchhhhcchhcCccceeeeecchh
Confidence 34444454443 566789999999999999999999999999999999999875 368888886553
No 224
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=97.90 E-value=5.9e-05 Score=65.40 Aligned_cols=113 Identities=21% Similarity=0.277 Sum_probs=70.0
Q ss_pred cHHHHHHHHhhCC--CCCeEEEEcCCcchhHHHHHhc---------CCcEEEEcCCHHHHHHHHc--------CCCceEE
Q 024647 20 PEELFKFITSKTT--NHELAWDVGTGSGQAAASLSGI---------FENVIGTETSPKQIEFATK--------LPNIRYE 80 (265)
Q Consensus 20 ~~~l~~~l~~~~~--~~~~vlDvGcG~G~~~~~l~~~---------~~~v~~vD~s~~~~~~a~~--------~~~~~~~ 80 (265)
|..+.+++..... ++.+|+|-.||+|.+...+.++ ..+++|+|+++.++..++- ..+....
T Consensus 31 P~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~ 110 (311)
T PF02384_consen 31 PREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINII 110 (311)
T ss_dssp -HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEE
T ss_pred HHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccccccc
Confidence 6666666665543 4467999999999998888763 2469999999999987753 1222344
Q ss_pred ecCCccchhhhhhccC-CCCceeEEEecccc--c-cCCh-------------------hHHHHHHHHHhcCCCcEEEEEe
Q 024647 81 LTSPAMSIAELEQNVA-AQSTVDLVTIAQAM--H-WFDL-------------------PQFYNQVKWVLKKPNGVIATWC 137 (265)
Q Consensus 81 ~~~~~~~~~d~~~~~~-~~~~~Dlv~~~~~~--~-~~~~-------------------~~~l~~~~~~Lk~pgG~l~~~~ 137 (265)
..+. +..... ....||+|+++-.+ . |.+. -.++..+.+.|+ +||.+++..
T Consensus 111 ~~d~------l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk-~~G~~~~Il 183 (311)
T PF02384_consen 111 QGDS------LENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLK-PGGRAAIIL 183 (311)
T ss_dssp ES-T------TTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEE-EEEEEEEEE
T ss_pred cccc------ccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcc-cccceeEEe
Confidence 4221 222111 24689999998733 2 2110 148899999999 999988766
Q ss_pred cC
Q 024647 138 YT 139 (265)
Q Consensus 138 ~~ 139 (265)
+.
T Consensus 184 p~ 185 (311)
T PF02384_consen 184 PN 185 (311)
T ss_dssp EH
T ss_pred cc
Confidence 63
No 225
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.89 E-value=0.00012 Score=59.72 Aligned_cols=106 Identities=17% Similarity=0.168 Sum_probs=72.9
Q ss_pred HHHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhcCC-cEEEEcCCHHHHH-HHHcCCCceEE-ecCCccchhhhhhccC
Q 024647 22 ELFKFITSKT--TNHELAWDVGTGSGQAAASLSGIFE-NVIGTETSPKQIE-FATKLPNIRYE-LTSPAMSIAELEQNVA 96 (265)
Q Consensus 22 ~l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~-~a~~~~~~~~~-~~~~~~~~~d~~~~~~ 96 (265)
+|...+.... .++..+||+|+.||.+|..+.++++ +|+|+|..-.++. ..+..+.+... ..+++.... +++
T Consensus 66 KL~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~--~~~-- 141 (245)
T COG1189 66 KLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTP--EDF-- 141 (245)
T ss_pred HHHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhcCCcEEEEecCChhhCCH--HHc--
Confidence 5666665543 5778999999999999999999987 6999999998776 34443333322 222211111 111
Q ss_pred CCCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEE
Q 024647 97 AQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIAT 135 (265)
Q Consensus 97 ~~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~ 135 (265)
. +..|++++.-++ +.....+..+..+++ ++|-++.
T Consensus 142 ~-~~~d~~v~DvSF--ISL~~iLp~l~~l~~-~~~~~v~ 176 (245)
T COG1189 142 T-EKPDLIVIDVSF--ISLKLILPALLLLLK-DGGDLVL 176 (245)
T ss_pred c-cCCCeEEEEeeh--hhHHHHHHHHHHhcC-CCceEEE
Confidence 2 267899987552 266789999999999 8988764
No 226
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=97.89 E-value=8.1e-05 Score=69.23 Aligned_cols=54 Identities=19% Similarity=0.175 Sum_probs=40.2
Q ss_pred cHHHHHHHHhhC----C-----CCCeEEEEcCCcchhHHHHHhcC----------CcEEEEcCCHHHHHHHHc
Q 024647 20 PEELFKFITSKT----T-----NHELAWDVGTGSGQAAASLSGIF----------ENVIGTETSPKQIEFATK 73 (265)
Q Consensus 20 ~~~l~~~l~~~~----~-----~~~~vlDvGcG~G~~~~~l~~~~----------~~v~~vD~s~~~~~~a~~ 73 (265)
|..+.+.+.... + ...+|||.|||+|.+...++++. .+++|+|+++..+..++.
T Consensus 9 P~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~ 81 (524)
T TIGR02987 9 PPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKK 81 (524)
T ss_pred cHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHH
Confidence 455655555432 1 33589999999999999887643 258999999999998864
No 227
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=97.89 E-value=0.0001 Score=61.99 Aligned_cols=100 Identities=17% Similarity=0.202 Sum_probs=70.5
Q ss_pred CCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHc-------C------C----------------CceEE----
Q 024647 34 HELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATK-------L------P----------------NIRYE---- 80 (265)
Q Consensus 34 ~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~-------~------~----------------~~~~~---- 80 (265)
..+||-=|||.|.++..++.++..+.|.|.|--|+-..+- . | .+.+-
T Consensus 57 ~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv~p 136 (270)
T PF07942_consen 57 KIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDVDP 136 (270)
T ss_pred ccEEEEcCCCcchHHHHHhhccceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCcCc
Confidence 4689999999999999999999999999999999654321 0 0 01111
Q ss_pred ------ecCCccchhhhhhccCCC---CceeEEEeccccccC-ChhHHHHHHHHHhcCCCcEEE
Q 024647 81 ------LTSPAMSIAELEQNVAAQ---STVDLVTIAQAMHWF-DLPQFYNQVKWVLKKPNGVIA 134 (265)
Q Consensus 81 ------~~~~~~~~~d~~~~~~~~---~~~Dlv~~~~~~~~~-~~~~~l~~~~~~Lk~pgG~l~ 134 (265)
..+..+..+|+.....++ +++|.|+..+-+--. +.-..++.+.++|| |||..+
T Consensus 137 ~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLk-pgG~WI 199 (270)
T PF07942_consen 137 SSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLK-PGGYWI 199 (270)
T ss_pred ccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhc-cCCEEE
Confidence 112333446665554344 689999987654444 45679999999999 999443
No 228
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=97.87 E-value=4.8e-05 Score=65.58 Aligned_cols=110 Identities=20% Similarity=0.215 Sum_probs=75.9
Q ss_pred cHHHHHHHHhhCCCCCeEEEEcCCcchhHHHHHhc--CCcEEEEcCCHHHHHHHHcC-------------CCceEEecCC
Q 024647 20 PEELFKFITSKTTNHELAWDVGTGSGQAAASLSGI--FENVIGTETSPKQIEFATKL-------------PNIRYELTSP 84 (265)
Q Consensus 20 ~~~l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~-------------~~~~~~~~~~ 84 (265)
.+.++---.+..+...+||-+|.|.|...+.+.+. ..+|+-||.+|.|++.++.. +.++...
T Consensus 276 hEsLV~pals~~~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~--- 352 (508)
T COG4262 276 HESLVYPALSSVRGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVN--- 352 (508)
T ss_pred hheeeecccccccccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEe---
Confidence 33333323333355578999999999999999875 45899999999999988731 3344444
Q ss_pred ccchhhhhhc-cCCCCceeEEEeccccc------cCChhHHHHHHHHHhcCCCcEEEEEe
Q 024647 85 AMSIAELEQN-VAAQSTVDLVTIAQAMH------WFDLPQFYNQVKWVLKKPNGVIATWC 137 (265)
Q Consensus 85 ~~~~~d~~~~-~~~~~~~Dlv~~~~~~~------~~~~~~~l~~~~~~Lk~pgG~l~~~~ 137 (265)
+|+-++ ....+.||.||....=. -+=...+..-+.+.|+ ++|.+++..
T Consensus 353 ----dDAf~wlr~a~~~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~-e~Gl~VvQa 407 (508)
T COG4262 353 ----DDAFQWLRTAADMFDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLA-ETGLMVVQA 407 (508)
T ss_pred ----ccHHHHHHhhcccccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcC-cCceEEEec
Confidence 555444 33456899999864211 1112368888999999 999998843
No 229
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=97.87 E-value=9.5e-05 Score=60.00 Aligned_cols=99 Identities=19% Similarity=0.269 Sum_probs=53.5
Q ss_pred CCCCeEEEEcCCcchhHHHHHhc--CCcEEEEcCCHHHHHHHHcC---------------CCceEEecCCccchhhhhhc
Q 024647 32 TNHELAWDVGTGSGQAAASLSGI--FENVIGTETSPKQIEFATKL---------------PNIRYELTSPAMSIAELEQN 94 (265)
Q Consensus 32 ~~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~---------------~~~~~~~~~~~~~~~d~~~~ 94 (265)
.+.+..+|||||.|....+.+-. +.+.+|||+.+...+.|+.. ..+.+..++ +...+....
T Consensus 41 ~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gd--fl~~~~~~~ 118 (205)
T PF08123_consen 41 TPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGD--FLDPDFVKD 118 (205)
T ss_dssp -TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS---TTTHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccC--ccccHhHhh
Confidence 46789999999999998877643 34699999999988766531 223334321 122221111
Q ss_pred cCCCCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEE
Q 024647 95 VAAQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIAT 135 (265)
Q Consensus 95 ~~~~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~ 135 (265)
.+ ...|+|+++..+---+....+.+...-|| +|..++.
T Consensus 119 ~~--s~AdvVf~Nn~~F~~~l~~~L~~~~~~lk-~G~~IIs 156 (205)
T PF08123_consen 119 IW--SDADVVFVNNTCFDPDLNLALAELLLELK-PGARIIS 156 (205)
T ss_dssp HG--HC-SEEEE--TTT-HHHHHHHHHHHTTS--TT-EEEE
T ss_pred hh--cCCCEEEEeccccCHHHHHHHHHHHhcCC-CCCEEEE
Confidence 11 24799999875321133345677777888 7777654
No 230
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.87 E-value=3.5e-05 Score=60.42 Aligned_cols=92 Identities=21% Similarity=0.161 Sum_probs=70.6
Q ss_pred CCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcC------CCceEEecCCccchhhhhhccCCCCceeEEEec
Q 024647 34 HELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKL------PNIRYELTSPAMSIAELEQNVAAQSTVDLVTIA 107 (265)
Q Consensus 34 ~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~ 107 (265)
.+.+.|+|+|+|.++...++...+|++++.+|...+.|.+. .|++.+. +|+....+ +..|+|+|-
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~-------gDA~~y~f--e~ADvvicE 103 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHAAERVIAIEKDPKRARLAEENLHVPGDVNWEVVV-------GDARDYDF--ENADVVICE 103 (252)
T ss_pred hhceeeccCCcchHHHHHHhhhceEEEEecCcHHHHHhhhcCCCCCCcceEEEe-------cccccccc--cccceeHHH
Confidence 37799999999999999998877899999999999988863 3444444 77777665 468999986
Q ss_pred ccccc--C-ChhHHHHHHHHHhcCCCcEEEE
Q 024647 108 QAMHW--F-DLPQFYNQVKWVLKKPNGVIAT 135 (265)
Q Consensus 108 ~~~~~--~-~~~~~l~~~~~~Lk~pgG~l~~ 135 (265)
..=-- . ....+++.+..-|| -+++++=
T Consensus 104 mlDTaLi~E~qVpV~n~vleFLr-~d~tiiP 133 (252)
T COG4076 104 MLDTALIEEKQVPVINAVLEFLR-YDPTIIP 133 (252)
T ss_pred HhhHHhhcccccHHHHHHHHHhh-cCCcccc
Confidence 52111 1 34578888888999 8988863
No 231
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=97.81 E-value=0.00019 Score=64.32 Aligned_cols=106 Identities=16% Similarity=0.215 Sum_probs=81.5
Q ss_pred HHHHhhCCCCC-eEEEEcCCcchhHHHHHhcC-CcEEEEcCCHHHHHHHHc-----CCCceEEecCCccchhhhhhccCC
Q 024647 25 KFITSKTTNHE-LAWDVGTGSGQAAASLSGIF-ENVIGTETSPKQIEFATK-----LPNIRYELTSPAMSIAELEQNVAA 97 (265)
Q Consensus 25 ~~l~~~~~~~~-~vlDvGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~-----~~~~~~~~~~~~~~~~d~~~~~~~ 97 (265)
..|..+..+.. +++.+|||.-.++..+.+-+ ..|+.+|+|+..++.... .+...+.. .|+..+.++
T Consensus 39 ~~i~~~~~p~~~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~-------~d~~~l~fe 111 (482)
T KOG2352|consen 39 GSIMKYLSPSDFKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKERPEMQMVE-------MDMDQLVFE 111 (482)
T ss_pred HHHHHhhchhhceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccCCcceEEEE-------ecchhccCC
Confidence 33444444545 89999999999998888876 479999999999987654 23444555 677888899
Q ss_pred CCceeEEEeccccccC--Ch---------hHHHHHHHHHhcCCCcEEEEEec
Q 024647 98 QSTVDLVTIAQAMHWF--DL---------PQFYNQVKWVLKKPNGVIATWCY 138 (265)
Q Consensus 98 ~~~~Dlv~~~~~~~~~--~~---------~~~l~~~~~~Lk~pgG~l~~~~~ 138 (265)
+++||+|+.-..++.+ |. ...+.++.|+|+ +||+++....
T Consensus 112 dESFdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~-~~gk~~svtl 162 (482)
T KOG2352|consen 112 DESFDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLA-PGGKYISVTL 162 (482)
T ss_pred CcceeEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhc-cCCEEEEEEe
Confidence 9999999998888765 32 245789999999 9999876555
No 232
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=97.80 E-value=0.00029 Score=62.21 Aligned_cols=103 Identities=18% Similarity=0.315 Sum_probs=70.2
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcCCc----EEEEcCCHHHHHHHHc------CCCceEEecCCccchhhhhhccCCCCce
Q 024647 32 TNHELAWDVGTGSGQAAASLSGIFEN----VIGTETSPKQIEFATK------LPNIRYELTSPAMSIAELEQNVAAQSTV 101 (265)
Q Consensus 32 ~~~~~vlDvGcG~G~~~~~l~~~~~~----v~~vD~s~~~~~~a~~------~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 101 (265)
.++.+|||+.+++|.=|.++++...+ |+++|+++.-+...+. ..|+.....+. ..+.......+.|
T Consensus 155 ~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~----~~~~~~~~~~~~f 230 (355)
T COG0144 155 KPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDA----RRLAELLPGGEKF 230 (355)
T ss_pred CCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEeccc----ccccccccccCcC
Confidence 46789999999999999999987654 6999999998887654 13444444222 1111121222359
Q ss_pred eEEEecc------ccc------cC-C----------hhHHHHHHHHHhcCCCcEEEEEecC
Q 024647 102 DLVTIAQ------AMH------WF-D----------LPQFYNQVKWVLKKPNGVIATWCYT 139 (265)
Q Consensus 102 Dlv~~~~------~~~------~~-~----------~~~~l~~~~~~Lk~pgG~l~~~~~~ 139 (265)
|.|++.- +++ |- . ...++..+.++|| |||.|+..+..
T Consensus 231 D~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk-~GG~LVYSTCS 290 (355)
T COG0144 231 DRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLK-PGGVLVYSTCS 290 (355)
T ss_pred cEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcC-CCCEEEEEccC
Confidence 9999743 221 21 1 1258889999999 99999987775
No 233
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=97.79 E-value=9.7e-05 Score=57.95 Aligned_cols=113 Identities=15% Similarity=0.078 Sum_probs=69.6
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcC-C--cEEEEcCCHHHHHHHHcCCCceEEec-CCcc---chhhhhhccCCCCceeEE
Q 024647 32 TNHELAWDVGTGSGQAAASLSGIF-E--NVIGTETSPKQIEFATKLPNIRYELT-SPAM---SIAELEQNVAAQSTVDLV 104 (265)
Q Consensus 32 ~~~~~vlDvGcG~G~~~~~l~~~~-~--~v~~vD~s~~~~~~a~~~~~~~~~~~-~~~~---~~~d~~~~~~~~~~~Dlv 104 (265)
.++++|||+||-+|..++-..++. + .|.|||+-+- ....++.++++ +++. ...-.+. +++..+|+|
T Consensus 68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~-----~p~~Ga~~i~~~dvtdp~~~~ki~e~--lp~r~VdvV 140 (232)
T KOG4589|consen 68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI-----EPPEGATIIQGNDVTDPETYRKIFEA--LPNRPVDVV 140 (232)
T ss_pred CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec-----cCCCCcccccccccCCHHHHHHHHHh--CCCCcccEE
Confidence 678999999999999999988876 3 4999997443 22245555554 1210 0011222 477899999
Q ss_pred Eeccc-----cccCChhHHHHHH-------HHHhcCCCcEEEEEecCCCCCChHHHHhhcc
Q 024647 105 TIAQA-----MHWFDLPQFYNQV-------KWVLKKPNGVIATWCYTVPEVNVSVDAVFQP 153 (265)
Q Consensus 105 ~~~~~-----~~~~~~~~~l~~~-------~~~Lk~pgG~l~~~~~~~~~~~~~~~~~~~~ 153 (265)
++..+ +...|....++-| ...++ |+|.+++-.+.... .+.+.+.+..
T Consensus 141 lSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~-p~g~fvcK~w~g~e-~~~l~r~l~~ 199 (232)
T KOG4589|consen 141 LSDMAPNATGVRIRDHYRSIELCDSALLFALTLLI-PNGSFVCKLWDGSE-EALLQRRLQA 199 (232)
T ss_pred EeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcC-CCcEEEEEEecCCc-hHHHHHHHHH
Confidence 99753 2223444444444 55678 99999985554333 3444443333
No 234
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=97.73 E-value=5.5e-05 Score=63.24 Aligned_cols=105 Identities=17% Similarity=0.143 Sum_probs=63.2
Q ss_pred CCCeEEEEcCCcchhHHHH-HhcCCcEEEEcCCHHHHHHHHc--CCCceE-----------EecCC--------------
Q 024647 33 NHELAWDVGTGSGQAAASL-SGIFENVIGTETSPKQIEFATK--LPNIRY-----------ELTSP-------------- 84 (265)
Q Consensus 33 ~~~~vlDvGcG~G~~~~~l-~~~~~~v~~vD~s~~~~~~a~~--~~~~~~-----------~~~~~-------------- 84 (265)
++.++||||||+-.....- .+.+.+|+..|.++..++..++ ...-.+ ..+..
T Consensus 56 ~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~V 135 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRAV 135 (256)
T ss_dssp -EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHHE
T ss_pred CCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHhh
Confidence 4568999999996554332 3566789999999999987654 000000 00000
Q ss_pred -ccchhhhhhcc-CCC-----CceeEEEeccccccC--Chh---HHHHHHHHHhcCCCcEEEEEec
Q 024647 85 -AMSIAELEQNV-AAQ-----STVDLVTIAQAMHWF--DLP---QFYNQVKWVLKKPNGVIATWCY 138 (265)
Q Consensus 85 -~~~~~d~~~~~-~~~-----~~~Dlv~~~~~~~~~--~~~---~~l~~~~~~Lk~pgG~l~~~~~ 138 (265)
.++..|+.+.+ +.. .++|+|++.+++... |.+ .+++++.++|| |||.|++...
T Consensus 136 k~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLk-pGG~Lil~~~ 200 (256)
T PF01234_consen 136 KQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLK-PGGHLILAGV 200 (256)
T ss_dssp EEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEE-EEEEEEEEEE
T ss_pred ceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcC-CCcEEEEEEE
Confidence 00112332221 111 249999999988765 443 68999999999 9999998554
No 235
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=97.72 E-value=0.00021 Score=63.37 Aligned_cols=92 Identities=14% Similarity=0.100 Sum_probs=69.5
Q ss_pred CeEEEEcCCcchhHHHHHhc--C-CcEEEEcCCHHHHHHHHcC------CCceEEecCCccchhhhhhcc-CCCCceeEE
Q 024647 35 ELAWDVGTGSGQAAASLSGI--F-ENVIGTETSPKQIEFATKL------PNIRYELTSPAMSIAELEQNV-AAQSTVDLV 104 (265)
Q Consensus 35 ~~vlDvGcG~G~~~~~l~~~--~-~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~d~~~~~-~~~~~~Dlv 104 (265)
.+|||+.||+|..+..++.+ + .+|+++|+++..++.+++. .++.+.. +|+..+. .....||+|
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~-------~Da~~~l~~~~~~fDvI 118 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPN-------EDAANVLRYRNRKFHVI 118 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEc-------hhHHHHHHHhCCCCCEE
Confidence 58999999999999999987 3 4799999999999988752 2334444 5555442 123579999
Q ss_pred EeccccccCChhHHHHHHHHHhcCCCcEEEEEe
Q 024647 105 TIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWC 137 (265)
Q Consensus 105 ~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~ 137 (265)
...- + -.+..+++.+.+.++ +||.|.+..
T Consensus 119 dlDP-f--Gs~~~fld~al~~~~-~~glL~vTa 147 (374)
T TIGR00308 119 DIDP-F--GTPAPFVDSAIQASA-ERGLLLVTA 147 (374)
T ss_pred EeCC-C--CCcHHHHHHHHHhcc-cCCEEEEEe
Confidence 9864 2 144689999999999 899998853
No 236
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=97.66 E-value=0.00027 Score=55.93 Aligned_cols=114 Identities=16% Similarity=0.110 Sum_probs=71.9
Q ss_pred HHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhcCC-cEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCC
Q 024647 23 LFKFITSKT--TNHELAWDVGTGSGQAAASLSGIFE-NVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQS 99 (265)
Q Consensus 23 l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 99 (265)
+.+++..+. -.+++|||+|+|+|..+...++.++ .|++.|+.|-..+..+-..+.+. .++.++..|. +. .+.
T Consensus 67 lAR~i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~ang--v~i~~~~~d~--~g-~~~ 141 (218)
T COG3897 67 LARYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANG--VSILFTHADL--IG-SPP 141 (218)
T ss_pred HHHHHhcCccccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhcc--ceeEEeeccc--cC-CCc
Confidence 344444432 2568899999999999999999987 59999999776665543211111 1111111222 33 667
Q ss_pred ceeEEEeccccccC-ChhHHHHHHHHHhcCCCcE-EEEEecCCCCC
Q 024647 100 TVDLVTIAQAMHWF-DLPQFYNQVKWVLKKPNGV-IATWCYTVPEV 143 (265)
Q Consensus 100 ~~Dlv~~~~~~~~~-~~~~~l~~~~~~Lk~pgG~-l~~~~~~~~~~ 143 (265)
.+|+++++..+.-- ...++++ +.+.|+ ..|. +++.+++.+.+
T Consensus 142 ~~Dl~LagDlfy~~~~a~~l~~-~~~~l~-~~g~~vlvgdp~R~~l 185 (218)
T COG3897 142 AFDLLLAGDLFYNHTEADRLIP-WKDRLA-EAGAAVLVGDPGRAYL 185 (218)
T ss_pred ceeEEEeeceecCchHHHHHHH-HHHHHH-hCCCEEEEeCCCCCCC
Confidence 89999998866544 3345666 777777 5665 44556665544
No 237
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.49 E-value=0.00022 Score=54.46 Aligned_cols=42 Identities=24% Similarity=0.306 Sum_probs=36.0
Q ss_pred CCCCeEEEEcCCcchhHHHHHh-----c-CCcEEEEcCCHHHHHHHHc
Q 024647 32 TNHELAWDVGTGSGQAAASLSG-----I-FENVIGTETSPKQIEFATK 73 (265)
Q Consensus 32 ~~~~~vlDvGcG~G~~~~~l~~-----~-~~~v~~vD~s~~~~~~a~~ 73 (265)
.+..+|+|+|||.|.+++.|+. . ..+|++||.++..++.+.+
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~ 71 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQK 71 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHH
Confidence 4567899999999999999998 3 3479999999999988765
No 238
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.47 E-value=0.00075 Score=57.05 Aligned_cols=95 Identities=14% Similarity=0.131 Sum_probs=58.0
Q ss_pred CCeEEEEcCCcc-hhHHHHHhc-C--CcEEEEcCCHHHHHHHHcC--------CCceEEecCCccchhhhhhccCCCCce
Q 024647 34 HELAWDVGTGSG-QAAASLSGI-F--ENVIGTETSPKQIEFATKL--------PNIRYELTSPAMSIAELEQNVAAQSTV 101 (265)
Q Consensus 34 ~~~vlDvGcG~G-~~~~~l~~~-~--~~v~~vD~s~~~~~~a~~~--------~~~~~~~~~~~~~~~d~~~~~~~~~~~ 101 (265)
+.+|+=||||+= ..+..+++. + ..|+++|+++..++.+++. .++.|.. +|.......-..|
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~-------~d~~~~~~dl~~~ 193 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFIT-------ADVLDVTYDLKEY 193 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEE-------S-GGGG-GG----
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEe-------cchhccccccccC
Confidence 469999999984 455555554 3 4689999999999988752 4567777 4444443334579
Q ss_pred eEEEeccccccC--ChhHHHHHHHHHhcCCCcEEEEE
Q 024647 102 DLVTIAQAMHWF--DLPQFYNQVKWVLKKPNGVIATW 136 (265)
Q Consensus 102 Dlv~~~~~~~~~--~~~~~l~~~~~~Lk~pgG~l~~~ 136 (265)
|+|+.+...-.- +..+++..+.+.++ ||..+++-
T Consensus 194 DvV~lAalVg~~~e~K~~Il~~l~~~m~-~ga~l~~R 229 (276)
T PF03059_consen 194 DVVFLAALVGMDAEPKEEILEHLAKHMA-PGARLVVR 229 (276)
T ss_dssp SEEEE-TT-S----SHHHHHHHHHHHS--TTSEEEEE
T ss_pred CEEEEhhhcccccchHHHHHHHHHhhCC-CCcEEEEe
Confidence 999977654433 66789999999999 99988874
No 239
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=97.45 E-value=0.00034 Score=55.67 Aligned_cols=53 Identities=17% Similarity=0.275 Sum_probs=39.4
Q ss_pred cHHHHHHHHhhC------CCCCeEEEEcCCcchhHHHHHhcCCc--EEEEcCCHHHHHHHH
Q 024647 20 PEELFKFITSKT------TNHELAWDVGTGSGQAAASLSGIFEN--VIGTETSPKQIEFAT 72 (265)
Q Consensus 20 ~~~l~~~l~~~~------~~~~~vlDvGcG~G~~~~~l~~~~~~--v~~vD~s~~~~~~a~ 72 (265)
.++.++|-.-+. .+.--..|||||-|.+...|+..+++ ++|.||-....++.+
T Consensus 41 sP~~mDWS~~yp~f~~~~~~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk 101 (249)
T KOG3115|consen 41 SPQEMDWSKYYPDFRRALNKKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVK 101 (249)
T ss_pred ChHhCcHHHhhhhhhhhccccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHH
Confidence 355666654331 12234799999999999999999986 899999888777655
No 240
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.45 E-value=0.00019 Score=54.68 Aligned_cols=38 Identities=24% Similarity=0.307 Sum_probs=34.2
Q ss_pred eEEEEcCCcchhHHHHHhcCCc--EEEEcCCHHHHHHHHc
Q 024647 36 LAWDVGTGSGQAAASLSGIFEN--VIGTETSPKQIEFATK 73 (265)
Q Consensus 36 ~vlDvGcG~G~~~~~l~~~~~~--v~~vD~s~~~~~~a~~ 73 (265)
++||+|||.|..+..+++.+++ ++++|+++.+.+.+++
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~ 40 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEE 40 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHH
Confidence 4899999999999999988764 9999999999998774
No 241
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=97.43 E-value=0.0025 Score=56.29 Aligned_cols=101 Identities=22% Similarity=0.231 Sum_probs=70.6
Q ss_pred CCCeEEEEcCCc-chhHHHHHhcC--CcEEEEcCCHHHHHHHHcCCCceEEecCCc-cchhhhhhccCCCCceeEEEecc
Q 024647 33 NHELAWDVGTGS-GQAAASLSGIF--ENVIGTETSPKQIEFATKLPNIRYELTSPA-MSIAELEQNVAAQSTVDLVTIAQ 108 (265)
Q Consensus 33 ~~~~vlDvGcG~-G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~-~~~~d~~~~~~~~~~~Dlv~~~~ 108 (265)
++.+|+-+|||+ |.++..+++.. .+|+++|+++.-++.|++.........+.+ ......... .....+|+++-..
T Consensus 168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~-t~g~g~D~vie~~ 246 (350)
T COG1063 168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILEL-TGGRGADVVIEAV 246 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHH-hCCCCCCEEEECC
Confidence 344899999998 99988888765 479999999999999987433343333221 000111112 1223699999765
Q ss_pred ccccCChhHHHHHHHHHhcCCCcEEEEEecCC
Q 024647 109 AMHWFDLPQFYNQVKWVLKKPNGVIATWCYTV 140 (265)
Q Consensus 109 ~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~~~ 140 (265)
. ...++..+.++++ |||++++.....
T Consensus 247 G-----~~~~~~~ai~~~r-~gG~v~~vGv~~ 272 (350)
T COG1063 247 G-----SPPALDQALEALR-PGGTVVVVGVYG 272 (350)
T ss_pred C-----CHHHHHHHHHHhc-CCCEEEEEeccC
Confidence 4 4568999999999 999999866653
No 242
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.40 E-value=0.00079 Score=64.79 Aligned_cols=113 Identities=18% Similarity=0.165 Sum_probs=72.0
Q ss_pred CcHHHHHHHHhhC---CCCCeEEEEcCCcchhHHHHHhc-----------------------------------------
Q 024647 19 YPEELFKFITSKT---TNHELAWDVGTGSGQAAASLSGI----------------------------------------- 54 (265)
Q Consensus 19 y~~~l~~~l~~~~---~~~~~vlDvGcG~G~~~~~l~~~----------------------------------------- 54 (265)
..+.+...+.... .++..++|-+||+|++....+..
T Consensus 173 l~etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~ 252 (702)
T PRK11783 173 LKENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGL 252 (702)
T ss_pred CcHHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcc
Confidence 4455555554432 34678999999999999876531
Q ss_pred ---CCcEEEEcCCHHHHHHHHcC-------CCceEEecCCccchhhhhhccCC--CCceeEEEeccccc-cC-C---hhH
Q 024647 55 ---FENVIGTETSPKQIEFATKL-------PNIRYELTSPAMSIAELEQNVAA--QSTVDLVTIAQAMH-WF-D---LPQ 117 (265)
Q Consensus 55 ---~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~d~~~~~~~--~~~~Dlv~~~~~~~-~~-~---~~~ 117 (265)
..+++|+|+++.+++.|+.. ..+.+.+ +|+.+++.+ .+++|+|+++-..- -+ + ...
T Consensus 253 ~~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~-------~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~ 325 (702)
T PRK11783 253 AELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEV-------KDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIA 325 (702)
T ss_pred cccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEe-------CChhhcccccccCCCCEEEECCCCcCccCchHHHHH
Confidence 02589999999999999852 1245555 666666433 35799999997432 12 2 223
Q ss_pred HHHHH---HHHhcCCCcEEEEEecC
Q 024647 118 FYNQV---KWVLKKPNGVIATWCYT 139 (265)
Q Consensus 118 ~l~~~---~~~Lk~pgG~l~~~~~~ 139 (265)
++.++ .+... +|+.+++.+..
T Consensus 326 lY~~lg~~lk~~~-~g~~~~llt~~ 349 (702)
T PRK11783 326 LYSQLGRRLKQQF-GGWNAALFSSS 349 (702)
T ss_pred HHHHHHHHHHHhC-CCCeEEEEeCC
Confidence 43333 34445 68888776553
No 243
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=97.39 E-value=0.0001 Score=53.21 Aligned_cols=92 Identities=20% Similarity=0.217 Sum_probs=39.0
Q ss_pred EEEcCCcchhHHHHHhcC-----CcEEEEcCCHH---HHHHHHc---CCCceEEecCCccchhhhhhccCCCCceeEEEe
Q 024647 38 WDVGTGSGQAAASLSGIF-----ENVIGTETSPK---QIEFATK---LPNIRYELTSPAMSIAELEQNVAAQSTVDLVTI 106 (265)
Q Consensus 38 lDvGcG~G~~~~~l~~~~-----~~v~~vD~s~~---~~~~a~~---~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~ 106 (265)
||+|+..|..+..+++.. .+++++|+.+. ..+..++ ..++.+..++.. ..+..++ .+++|+++.
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~---~~l~~~~--~~~~dli~i 75 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSP---DFLPSLP--DGPIDLIFI 75 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-TH---HHHHHHH--H--EEEEEE
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcH---HHHHHcC--CCCEEEEEE
Confidence 689999999999988643 26999999993 3333332 256888886542 1122332 578999998
Q ss_pred ccccccC-ChhHHHHHHHHHhcCCCcEEEEE
Q 024647 107 AQAMHWF-DLPQFYNQVKWVLKKPNGVIATW 136 (265)
Q Consensus 107 ~~~~~~~-~~~~~l~~~~~~Lk~pgG~l~~~ 136 (265)
.. -|.. .....+..+...|+ |||++++=
T Consensus 76 Dg-~H~~~~~~~dl~~~~~~l~-~ggviv~d 104 (106)
T PF13578_consen 76 DG-DHSYEAVLRDLENALPRLA-PGGVIVFD 104 (106)
T ss_dssp ES----HHHHHHHHHHHGGGEE-EEEEEEEE
T ss_pred CC-CCCHHHHHHHHHHHHHHcC-CCeEEEEe
Confidence 64 2322 34467888899999 99998863
No 244
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.29 E-value=0.00069 Score=58.28 Aligned_cols=105 Identities=17% Similarity=0.191 Sum_probs=63.9
Q ss_pred CCCeEEEEcCCcchhHHHHHhcCC---cEEEEcCCHHHHHHHHcC-CC-----ceEEecCCccchhhhhhccCCCCceeE
Q 024647 33 NHELAWDVGTGSGQAAASLSGIFE---NVIGTETSPKQIEFATKL-PN-----IRYELTSPAMSIAELEQNVAAQSTVDL 103 (265)
Q Consensus 33 ~~~~vlDvGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~-~~-----~~~~~~~~~~~~~d~~~~~~~~~~~Dl 103 (265)
.++++||+|.|+|....++-.-++ .++.++.|+..-+..... .| ..+...++ ..|-..++ ....|++
T Consensus 113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~v---t~dRl~lp-~ad~ytl 188 (484)
T COG5459 113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDV---TEDRLSLP-AADLYTL 188 (484)
T ss_pred CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCcc---chhccCCC-ccceeeh
Confidence 356799999999998888777665 478888888876654321 11 11111111 12222232 2345666
Q ss_pred EEecc-ccccCC---hhHHHHHHHHHhcCCCcEEEEEecCCCC
Q 024647 104 VTIAQ-AMHWFD---LPQFYNQVKWVLKKPNGVIATWCYTVPE 142 (265)
Q Consensus 104 v~~~~-~~~~~~---~~~~l~~~~~~Lk~pgG~l~~~~~~~~~ 142 (265)
+++.. .+|--. ....+..+..++. |||.|++...+.+.
T Consensus 189 ~i~~~eLl~d~~ek~i~~~ie~lw~l~~-~gg~lVivErGtp~ 230 (484)
T COG5459 189 AIVLDELLPDGNEKPIQVNIERLWNLLA-PGGHLVIVERGTPA 230 (484)
T ss_pred hhhhhhhccccCcchHHHHHHHHHHhcc-CCCeEEEEeCCCch
Confidence 66544 223221 2247888899999 99999998877554
No 245
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.22 E-value=0.00043 Score=53.08 Aligned_cols=107 Identities=19% Similarity=0.205 Sum_probs=70.7
Q ss_pred CCeEEEEcCCc-chhHHHHHhcCC--cEEEEcCCHHHHHHHHcCCCce--EEecC---CccchhhhhhccCCCCceeEEE
Q 024647 34 HELAWDVGTGS-GQAAASLSGIFE--NVIGTETSPKQIEFATKLPNIR--YELTS---PAMSIAELEQNVAAQSTVDLVT 105 (265)
Q Consensus 34 ~~~vlDvGcG~-G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~--~~~~~---~~~~~~d~~~~~~~~~~~Dlv~ 105 (265)
+..|||+|.|- |..+..++...+ .|..+|=++..++..++.-+.+ .-... .++..-..+.. ....+||.|+
T Consensus 30 g~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq-~eq~tFDiIl 108 (201)
T KOG3201|consen 30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQ-QEQHTFDIIL 108 (201)
T ss_pred HHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHH-HhhCcccEEE
Confidence 46799999994 666666665543 5999999999888776521111 11111 11111111111 2556899999
Q ss_pred eccccccC-ChhHHHHHHHHHhcCCCcEEEEEecCCCC
Q 024647 106 IAQAMHWF-DLPQFYNQVKWVLKKPNGVIATWCYTVPE 142 (265)
Q Consensus 106 ~~~~~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~~~~~~ 142 (265)
++.++-.- -...+.+.+.+.|+ |.|.-++..++...
T Consensus 109 aADClFfdE~h~sLvdtIk~lL~-p~g~Al~fsPRRg~ 145 (201)
T KOG3201|consen 109 AADCLFFDEHHESLVDTIKSLLR-PSGRALLFSPRRGQ 145 (201)
T ss_pred eccchhHHHHHHHHHHHHHHHhC-cccceeEecCcccc
Confidence 99988755 45678899999999 99997777776543
No 246
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.21 E-value=0.0048 Score=49.28 Aligned_cols=118 Identities=22% Similarity=0.260 Sum_probs=79.9
Q ss_pred HHhhhCCCCcHHHHHHHHhhC-----CCCCeEEEEcCCcchhHHHHHhcCC--cEEEEcCCHHHHH----HHHcCCCceE
Q 024647 11 QYAETRPNYPEELFKFITSKT-----TNHELAWDVGTGSGQAAASLSGIFE--NVIGTETSPKQIE----FATKLPNIRY 79 (265)
Q Consensus 11 ~Y~~~rp~y~~~l~~~l~~~~-----~~~~~vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~----~a~~~~~~~~ 79 (265)
.|..+.|. -.++...+...+ .++.+||=+|+.+|+...++++-.. .+.|||.|+.+.. .+++++|+-=
T Consensus 50 eYR~Wnp~-RSKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni~P 128 (231)
T COG1889 50 EYREWNPR-RSKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNIIP 128 (231)
T ss_pred ceeeeCcc-hhHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCcee
Confidence 46677774 677877777654 4778999999999999999998764 5999999998765 4556677655
Q ss_pred EecCCccchhhhhhccCCCCceeEEEeccccccCCh-hHHHHHHHHHhcCCCcEEEEE
Q 024647 80 ELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWFDL-PQFYNQVKWVLKKPNGVIATW 136 (265)
Q Consensus 80 ~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~~~-~~~l~~~~~~Lk~pgG~l~~~ 136 (265)
+..+++ --+....--+.+|+|+..-+ --+. .-+..++..-|+ +||.+++.
T Consensus 129 IL~DA~----~P~~Y~~~Ve~VDviy~DVA--Qp~Qa~I~~~Na~~FLk-~~G~~~i~ 179 (231)
T COG1889 129 ILEDAR----KPEKYRHLVEKVDVIYQDVA--QPNQAEILADNAEFFLK-KGGYVVIA 179 (231)
T ss_pred eecccC----CcHHhhhhcccccEEEEecC--CchHHHHHHHHHHHhcc-cCCeEEEE
Confidence 553321 11112122346899987522 0122 236778889999 89966553
No 247
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=97.17 E-value=0.0021 Score=54.95 Aligned_cols=112 Identities=14% Similarity=0.192 Sum_probs=75.5
Q ss_pred cHHHHHHHHhh---CCCCCeEEEEcCCcchhHHHHHhcCC---cEEEEcCCHHHHHHHHc------CCCceEEecCCccc
Q 024647 20 PEELFKFITSK---TTNHELAWDVGTGSGQAAASLSGIFE---NVIGTETSPKQIEFATK------LPNIRYELTSPAMS 87 (265)
Q Consensus 20 ~~~l~~~l~~~---~~~~~~vlDvGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~------~~~~~~~~~~~~~~ 87 (265)
.++....+... ..++..|||+.+++|.=|..+++... .|++.|+++.-+...+. ..++....
T Consensus 69 vQd~sS~l~~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~------ 142 (283)
T PF01189_consen 69 VQDESSQLVALALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVIN------ 142 (283)
T ss_dssp EHHHHHHHHHHHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEE------
T ss_pred ecccccccccccccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEe------
Confidence 44444444333 24667899999999999999998754 69999999999887754 24555554
Q ss_pred hhhhhhc--cCCCCceeEEEecccc----ccC-C------------------hhHHHHHHHHHh----cCCCcEEEEEec
Q 024647 88 IAELEQN--VAAQSTVDLVTIAQAM----HWF-D------------------LPQFYNQVKWVL----KKPNGVIATWCY 138 (265)
Q Consensus 88 ~~d~~~~--~~~~~~~Dlv~~~~~~----~~~-~------------------~~~~l~~~~~~L----k~pgG~l~~~~~ 138 (265)
.|.... ......||.|++.-.. .+- + ..+.++.+.+.+ | |||+++..+.
T Consensus 143 -~D~~~~~~~~~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k-~gG~lvYsTC 220 (283)
T PF01189_consen 143 -ADARKLDPKKPESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFK-PGGRLVYSTC 220 (283)
T ss_dssp -SHHHHHHHHHHTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBE-EEEEEEEEES
T ss_pred -eccccccccccccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhccccc-CCCeEEEEec
Confidence 343333 1233469999974311 111 1 125788999999 9 9999998776
Q ss_pred C
Q 024647 139 T 139 (265)
Q Consensus 139 ~ 139 (265)
.
T Consensus 221 S 221 (283)
T PF01189_consen 221 S 221 (283)
T ss_dssp H
T ss_pred c
Confidence 4
No 248
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=97.16 E-value=0.0024 Score=54.81 Aligned_cols=90 Identities=13% Similarity=0.187 Sum_probs=64.0
Q ss_pred hCCCCcHHHHHHHHhhCCCCCeEEEEcCCcchhHHHHHhcC--CcEEEEcCCHHHHHHHHcC-----CCceEEecCCccc
Q 024647 15 TRPNYPEELFKFITSKTTNHELAWDVGTGSGQAAASLSGIF--ENVIGTETSPKQIEFATKL-----PNIRYELTSPAMS 87 (265)
Q Consensus 15 ~rp~y~~~l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~~~ 87 (265)
+.|...+++++.|. ..+++.++|.-||.|.-+..+++.. .+|+|+|.++.+++.+++. .++.++..+.
T Consensus 4 H~pVll~Evl~~L~--~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF--- 78 (305)
T TIGR00006 4 HQSVLLDEVVEGLN--IKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNF--- 78 (305)
T ss_pred CcchhHHHHHHhcC--cCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCH---
Confidence 45666666666663 2456789999999999999999875 5799999999999998752 2566666544
Q ss_pred hhhhhhc-c-CCCCceeEEEecccc
Q 024647 88 IAELEQN-V-AAQSTVDLVTIAQAM 110 (265)
Q Consensus 88 ~~d~~~~-~-~~~~~~Dlv~~~~~~ 110 (265)
.++... . ....++|.|+....+
T Consensus 79 -~~l~~~l~~~~~~~vDgIl~DLGv 102 (305)
T TIGR00006 79 -ANFFEHLDELLVTKIDGILVDLGV 102 (305)
T ss_pred -HHHHHHHHhcCCCcccEEEEeccC
Confidence 222221 1 133579999988743
No 249
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=97.14 E-value=0.0035 Score=54.46 Aligned_cols=96 Identities=20% Similarity=0.182 Sum_probs=70.6
Q ss_pred CCCCCeEEEEcCC-cchhHHHHHh-cCCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEecc
Q 024647 31 TTNHELAWDVGTG-SGQAAASLSG-IFENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQ 108 (265)
Q Consensus 31 ~~~~~~vlDvGcG-~G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~ 108 (265)
.++++.|+-+|+| .|..+.++++ .+++|+++|.|++-++.|+++....++...-. ..++... +.+|+|+..
T Consensus 164 ~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~---~~~~~~~---~~~d~ii~t- 236 (339)
T COG1064 164 VKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINSSDS---DALEAVK---EIADAIIDT- 236 (339)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcEEEEcCCc---hhhHHhH---hhCcEEEEC-
Confidence 4577889988888 3567777777 67899999999999999998755555553210 2223222 239999975
Q ss_pred ccccCChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647 109 AMHWFDLPQFYNQVKWVLKKPNGVIATWCYT 139 (265)
Q Consensus 109 ~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~~ 139 (265)
.. ...+....+.|+ +||++++....
T Consensus 237 ----v~-~~~~~~~l~~l~-~~G~~v~vG~~ 261 (339)
T COG1064 237 ----VG-PATLEPSLKALR-RGGTLVLVGLP 261 (339)
T ss_pred ----CC-hhhHHHHHHHHh-cCCEEEEECCC
Confidence 34 678999999999 99999987664
No 250
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=97.11 E-value=0.0015 Score=54.39 Aligned_cols=109 Identities=15% Similarity=0.194 Sum_probs=73.1
Q ss_pred CCcHHHHHHHHhh-CCCCCeEEEEcCCcchhHHHHHhcC---CcEEEEcCCHHHHHHHHc-------CCCceEEecCCcc
Q 024647 18 NYPEELFKFITSK-TTNHELAWDVGTGSGQAAASLSGIF---ENVIGTETSPKQIEFATK-------LPNIRYELTSPAM 86 (265)
Q Consensus 18 ~y~~~l~~~l~~~-~~~~~~vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~-------~~~~~~~~~~~~~ 86 (265)
.|++++.-.+... ..++.+|+|-|.|+|.++.++++.. .++.-.|......+.|.+ -.|+.+...+
T Consensus 89 ~Yt~Dia~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrD--- 165 (314)
T KOG2915|consen 89 LYTPDIAMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRD--- 165 (314)
T ss_pred EecccHHHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEee---
Confidence 4555554333222 3688999999999999999999876 479999998887777764 1566666533
Q ss_pred chhhhhhcc--CCCCceeEEEeccccccCChhHHHHHHHHHhcCCCc-EEEEEec
Q 024647 87 SIAELEQNV--AAQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNG-VIATWCY 138 (265)
Q Consensus 87 ~~~d~~~~~--~~~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG-~l~~~~~ 138 (265)
+.... ..+..+|.|+....-.| .++..++.+|| .+| +|+.+.+
T Consensus 166 ----Vc~~GF~~ks~~aDaVFLDlPaPw----~AiPha~~~lk-~~g~r~csFSP 211 (314)
T KOG2915|consen 166 ----VCGSGFLIKSLKADAVFLDLPAPW----EAIPHAAKILK-DEGGRLCSFSP 211 (314)
T ss_pred ----cccCCccccccccceEEEcCCChh----hhhhhhHHHhh-hcCceEEeccH
Confidence 33322 23568999998755444 45556666888 555 5555444
No 251
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.08 E-value=0.0066 Score=51.95 Aligned_cols=104 Identities=14% Similarity=0.141 Sum_probs=70.9
Q ss_pred CCCCeEEEEcCCc-chhHHHHHhcC--CcEEEEcCCHHHHHHHHcCCCceEEecCCccchhh----hhhccCCCCceeEE
Q 024647 32 TNHELAWDVGTGS-GQAAASLSGIF--ENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAE----LEQNVAAQSTVDLV 104 (265)
Q Consensus 32 ~~~~~vlDvGcG~-G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d----~~~~~~~~~~~Dlv 104 (265)
+.+.+||-+|+|+ |..+...++.+ .+|+.+|+++..++.|+++.--.+.+........+ ++.. .....+|..
T Consensus 168 k~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~v~~~-~g~~~~d~~ 246 (354)
T KOG0024|consen 168 KKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATVTDPSSHKSSPQELAELVEKA-LGKKQPDVT 246 (354)
T ss_pred ccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeEEeeccccccHHHHHHHHHhh-ccccCCCeE
Confidence 5678999999998 99998888875 37999999999999999853222222211100111 1222 233448888
Q ss_pred EeccccccCChhHHHHHHHHHhcCCCcEEEEEecCCCC
Q 024647 105 TIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCYTVPE 142 (265)
Q Consensus 105 ~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~~~~~ 142 (265)
+.... .+..++.+...++ +||++++..+..+.
T Consensus 247 ~dCsG-----~~~~~~aai~a~r-~gGt~vlvg~g~~~ 278 (354)
T KOG0024|consen 247 FDCSG-----AEVTIRAAIKATR-SGGTVVLVGMGAEE 278 (354)
T ss_pred EEccC-----chHHHHHHHHHhc-cCCEEEEeccCCCc
Confidence 86543 3467888899999 89998887776443
No 252
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=97.07 E-value=0.0038 Score=52.34 Aligned_cols=104 Identities=17% Similarity=0.162 Sum_probs=60.0
Q ss_pred CeEEEEcCCc--chhHHHHHhc---CCcEEEEcCCHHHHHHHHcC----CC--ceEEecCCccchhhhh-----hccCCC
Q 024647 35 ELAWDVGTGS--GQAAASLSGI---FENVIGTETSPKQIEFATKL----PN--IRYELTSPAMSIAELE-----QNVAAQ 98 (265)
Q Consensus 35 ~~vlDvGcG~--G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~----~~--~~~~~~~~~~~~~d~~-----~~~~~~ 98 (265)
.-.||||||- -..+-.+++. -++|+-||.+|..+++++.+ ++ ..+++.+.+--..=+. .+ +.-
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~-lD~ 148 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGL-LDF 148 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC---T
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhc-CCC
Confidence 4589999993 2334445543 35799999999999988752 45 6778855422111111 11 111
Q ss_pred CceeEEEeccccccC-C---hhHHHHHHHHHhcCCCcEEEEEecCC
Q 024647 99 STVDLVTIAQAMHWF-D---LPQFYNQVKWVLKKPNGVIATWCYTV 140 (265)
Q Consensus 99 ~~~Dlv~~~~~~~~~-~---~~~~l~~~~~~Lk~pgG~l~~~~~~~ 140 (265)
...=.++....+||+ | +..++..+...|. ||+.|++.....
T Consensus 149 ~rPVavll~~vLh~v~D~~dp~~iv~~l~d~la-pGS~L~ish~t~ 193 (267)
T PF04672_consen 149 DRPVAVLLVAVLHFVPDDDDPAGIVARLRDALA-PGSYLAISHATD 193 (267)
T ss_dssp TS--EEEECT-GGGS-CGCTHHHHHHHHHCCS--TT-EEEEEEEB-
T ss_pred CCCeeeeeeeeeccCCCccCHHHHHHHHHHhCC-CCceEEEEecCC
Confidence 233355666788998 4 5579999999999 999999977764
No 253
>KOG2730 consensus Methylase [General function prediction only]
Probab=97.07 E-value=0.001 Score=53.64 Aligned_cols=63 Identities=22% Similarity=0.265 Sum_probs=49.4
Q ss_pred cHHHHHHHHhhC---CCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcC-------CCceEEec
Q 024647 20 PEELFKFITSKT---TNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKL-------PNIRYELT 82 (265)
Q Consensus 20 ~~~l~~~l~~~~---~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~ 82 (265)
|+.....+.... -....|+|.-||-|.-+...+.+++.|++||++|.-++-|+.. ..+.|+++
T Consensus 78 pe~ia~~iA~~v~~~~~~~~iidaf~g~gGntiqfa~~~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~G 150 (263)
T KOG2730|consen 78 PEKIAEHIANRVVACMNAEVIVDAFCGVGGNTIQFALQGPYVIAIDIDPVKIACARHNAEVYGVPDRITFICG 150 (263)
T ss_pred cHHHHHHHHHHHHHhcCcchhhhhhhcCCchHHHHHHhCCeEEEEeccHHHHHHHhccceeecCCceeEEEec
Confidence 556666665443 2456799999999999999999999999999999999999863 34566663
No 254
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=97.02 E-value=0.0081 Score=52.86 Aligned_cols=109 Identities=18% Similarity=0.103 Sum_probs=71.0
Q ss_pred HHHHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhcCC-----------------------------------------c
Q 024647 21 EELFKFITSKT--TNHELAWDVGTGSGQAAASLSGIFE-----------------------------------------N 57 (265)
Q Consensus 21 ~~l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~-----------------------------------------~ 57 (265)
+-+...|.... .++..++|-=||+|++....+-... .
T Consensus 177 etLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~ 256 (381)
T COG0116 177 ETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPI 256 (381)
T ss_pred HHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccce
Confidence 44444444332 3446799999999999998765442 2
Q ss_pred EEEEcCCHHHHHHHHcC-------CCceEEecCCccchhhhhhccCCCCceeEEEecccccc-C-Ch---h----HHHHH
Q 024647 58 VIGTETSPKQIEFATKL-------PNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHW-F-DL---P----QFYNQ 121 (265)
Q Consensus 58 v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~-~-~~---~----~~l~~ 121 (265)
++|+|+++.+++.|+.. ..+.|.+ +|+..+..+-+.+|+|+|+-..-. + +. . .+.+.
T Consensus 257 ~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~-------~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~ 329 (381)
T COG0116 257 IYGSDIDPRHIEGAKANARAAGVGDLIEFKQ-------ADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRT 329 (381)
T ss_pred EEEecCCHHHHHHHHHHHHhcCCCceEEEEE-------cchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHH
Confidence 77999999999999852 3467777 666777544378999999873321 2 22 1 34445
Q ss_pred HHHHhcCCCcEEEEEe
Q 024647 122 VKWVLKKPNGVIATWC 137 (265)
Q Consensus 122 ~~~~Lk~pgG~l~~~~ 137 (265)
+.+.++ .-+..++.+
T Consensus 330 lk~~~~-~ws~~v~tt 344 (381)
T COG0116 330 LKRLLA-GWSRYVFTT 344 (381)
T ss_pred HHHHhc-CCceEEEEc
Confidence 556666 455555544
No 255
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=96.99 E-value=0.0011 Score=59.98 Aligned_cols=128 Identities=16% Similarity=0.248 Sum_probs=90.0
Q ss_pred hHHHHHHHHHhhhCCCCcHHHHHHHHhhCC-----CCCeEEEEcCCcchhHHHHHhc------CCcEEEEcCCHHHHHHH
Q 024647 3 ELFIKQAKQYAETRPNYPEELFKFITSKTT-----NHELAWDVGTGSGQAAASLSGI------FENVIGTETSPKQIEFA 71 (265)
Q Consensus 3 ~~f~~~a~~Y~~~rp~y~~~l~~~l~~~~~-----~~~~vlDvGcG~G~~~~~l~~~------~~~v~~vD~s~~~~~~a 71 (265)
..|+++.--|++ |.+.+...|....+ ...+++-+|+|-|-+..+..+. --++++||.+|.++-..
T Consensus 336 etFEkD~VKY~~----Yq~Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL 411 (649)
T KOG0822|consen 336 ETFEKDPVKYDQ----YQQAILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTL 411 (649)
T ss_pred hhhhccchHHHH----HHHHHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhh
Confidence 568888888888 67777777776643 2356899999999777765432 12589999999998877
Q ss_pred HcCCCceEEecCCccchhhhhhccCCCCceeEEEeccccccCC---hhHHHHHHHHHhcCCCcEEEEE
Q 024647 72 TKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWFD---LPQFYNQVKWVLKKPNGVIATW 136 (265)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~~---~~~~l~~~~~~Lk~pgG~l~~~ 136 (265)
+. -|.......+.++..|+..+..+.+..|++++-..-..-| -+..|.-+.+.|| |+|+.+=.
T Consensus 412 ~~-~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VSELLGSFGDNELSPECLDG~q~fLk-pdgIsIP~ 477 (649)
T KOG0822|consen 412 QN-RNFECWDNRVTIISSDMRKWNAPREQADIIVSELLGSFGDNELSPECLDGAQKFLK-PDGISIPS 477 (649)
T ss_pred hh-hchhhhcCeeEEEeccccccCCchhhccchHHHhhccccCccCCHHHHHHHHhhcC-CCceEccc
Confidence 65 2333333344444489999885568899998754222223 2579999999999 99887743
No 256
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=96.97 E-value=0.0032 Score=47.61 Aligned_cols=93 Identities=17% Similarity=0.167 Sum_probs=57.2
Q ss_pred cEEEEcCCHHHHHHHHcC-------CCceEEecCCccchhhhhhccCCCCceeEEEecccc-ccCC------h---hHHH
Q 024647 57 NVIGTETSPKQIEFATKL-------PNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAM-HWFD------L---PQFY 119 (265)
Q Consensus 57 ~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~-~~~~------~---~~~l 119 (265)
+|+|.|+-+..++..+++ .++.++..+. +.+... .+.+++|+++.+... .=-| + -.++
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sH----e~l~~~-i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al 75 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSH----ENLDEY-IPEGPVDAAIFNLGYLPGGDKSITTKPETTLKAL 75 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-G----GGGGGT---S--EEEEEEEESB-CTS-TTSB--HHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCH----HHHHhh-CccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHH
Confidence 589999999999987752 3588888665 444443 233689999998742 2113 2 2688
Q ss_pred HHHHHHhcCCCcEEEEEecCCCCCChHHHHhhcccc
Q 024647 120 NQVKWVLKKPNGVIATWCYTVPEVNVSVDAVFQPFY 155 (265)
Q Consensus 120 ~~~~~~Lk~pgG~l~~~~~~~~~~~~~~~~~~~~~~ 155 (265)
+.+.++|+ |||.+++..|....-..+-.++..+|.
T Consensus 76 ~~al~lL~-~gG~i~iv~Y~GH~gG~eE~~av~~~~ 110 (140)
T PF06962_consen 76 EAALELLK-PGGIITIVVYPGHPGGKEESEAVEEFL 110 (140)
T ss_dssp HHHHHHEE-EEEEEEEEE--STCHHHHHHHHHHHHH
T ss_pred HHHHHhhc-cCCEEEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999 999999877764443333333444444
No 257
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=96.87 E-value=0.0015 Score=59.06 Aligned_cols=127 Identities=18% Similarity=0.183 Sum_probs=71.3
Q ss_pred hHHHHHHHHHhhhCCCCcHHHHHHHHhhCCCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcCCCceEEec
Q 024647 3 ELFIKQAKQYAETRPNYPEELFKFITSKTTNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKLPNIRYELT 82 (265)
Q Consensus 3 ~~f~~~a~~Y~~~rp~y~~~l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~ 82 (265)
+.|..+...+.+.-..| ..+..... ....-..|+|..+|.|.++.+|.+.- |......|. .....+ .+-+..+
T Consensus 337 e~F~~Dt~~Wk~~V~~Y-~~l~~~~i-~~~~iRNVMDMnAg~GGFAAAL~~~~--VWVMNVVP~--~~~ntL-~vIydRG 409 (506)
T PF03141_consen 337 EEFKEDTKHWKKRVSHY-KKLLGLAI-KWGRIRNVMDMNAGYGGFAAALIDDP--VWVMNVVPV--SGPNTL-PVIYDRG 409 (506)
T ss_pred HHHHHHHHHHHHHHHHH-HHhhcccc-cccceeeeeeecccccHHHHHhccCC--ceEEEeccc--CCCCcc-hhhhhcc
Confidence 45666666665533333 11221000 11233579999999999999998654 333333222 011111 1112221
Q ss_pred CCccchhhhhhccCCCCceeEEEeccccc----cCChhHHHHHHHHHhcCCCcEEEEEe
Q 024647 83 SPAMSIAELEQNVAAQSTVDLVTIAQAMH----WFDLPQFYNQVKWVLKKPNGVIATWC 137 (265)
Q Consensus 83 ~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~----~~~~~~~l~~~~~~Lk~pgG~l~~~~ 137 (265)
.+-..+.==|.++.-+.+||+|.++..+- ..+...++-|+.|+|+ |+|.+++-+
T Consensus 410 LIG~yhDWCE~fsTYPRTYDLlHA~~lfs~~~~rC~~~~illEmDRILR-P~G~~iiRD 467 (506)
T PF03141_consen 410 LIGVYHDWCEAFSTYPRTYDLLHADGLFSLYKDRCEMEDILLEMDRILR-PGGWVIIRD 467 (506)
T ss_pred cchhccchhhccCCCCcchhheehhhhhhhhcccccHHHHHHHhHhhcC-CCceEEEec
Confidence 11001011144556678999999987553 2356789999999999 999999844
No 258
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=96.83 E-value=0.02 Score=50.16 Aligned_cols=96 Identities=15% Similarity=0.189 Sum_probs=64.3
Q ss_pred CCCeEEEEcCCc-chhHHHHHhc-CC-cEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEeccc
Q 024647 33 NHELAWDVGTGS-GQAAASLSGI-FE-NVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQA 109 (265)
Q Consensus 33 ~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~ 109 (265)
++++||-.|||. |.++..+++. +. +|+++|.+++.++.++++.....+...- .++..+....+.+|+|+...
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~----~~~~~~~~~~g~~D~vid~~- 243 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVNPQN----DDLDHYKAEKGYFDVSFEVS- 243 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEecCCc----ccHHHHhccCCCCCEEEECC-
Confidence 567888899985 7777777765 45 5999999999999998753222222110 12222221223589988652
Q ss_pred cccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647 110 MHWFDLPQFYNQVKWVLKKPNGVIATWCY 138 (265)
Q Consensus 110 ~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~ 138 (265)
.....+..+.++|+ +||++++...
T Consensus 244 ----G~~~~~~~~~~~l~-~~G~iv~~G~ 267 (343)
T PRK09880 244 ----GHPSSINTCLEVTR-AKGVMVQVGM 267 (343)
T ss_pred ----CCHHHHHHHHHHhh-cCCEEEEEcc
Confidence 23457888999999 9999987654
No 259
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=96.81 E-value=0.028 Score=47.79 Aligned_cols=68 Identities=15% Similarity=0.238 Sum_probs=52.0
Q ss_pred hCCCCcHHHHHHHHhhCCCCCeEEEEcCCcchhHHHHHhcCC---cEEEEcCCHHHHHHHHcC-----CCceEEecCC
Q 024647 15 TRPNYPEELFKFITSKTTNHELAWDVGTGSGQAAASLSGIFE---NVIGTETSPKQIEFATKL-----PNIRYELTSP 84 (265)
Q Consensus 15 ~rp~y~~~l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~ 84 (265)
+-|..-.+.++.|.. .++...+|.--|.|..+..+.+.++ +++|+|-++.+++.|++. .++.++..+.
T Consensus 7 HipVLl~E~i~~L~~--~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F 82 (314)
T COG0275 7 HIPVLLNEVVELLAP--KPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNF 82 (314)
T ss_pred ccchHHHHHHHhccc--CCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcH
Confidence 445555555555532 4558899999999999999999874 699999999999999862 3677777553
No 260
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=96.80 E-value=0.0067 Score=53.80 Aligned_cols=26 Identities=15% Similarity=0.471 Sum_probs=21.2
Q ss_pred hhhhhccCCCCceeEEEeccccccCC
Q 024647 89 AELEQNVAAQSTVDLVTIAQAMHWFD 114 (265)
Q Consensus 89 ~d~~~~~~~~~~~Dlv~~~~~~~~~~ 114 (265)
+.+..--+|.++.++++++.++||+.
T Consensus 151 GSFY~RLfP~~Slh~~~Ss~slHWLS 176 (386)
T PLN02668 151 GSFYRRLFPARSIDVFHSAFSLHWLS 176 (386)
T ss_pred ccccccccCCCceEEEEeeccceecc
Confidence 44544447999999999999999984
No 261
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=96.78 E-value=0.005 Score=51.01 Aligned_cols=109 Identities=13% Similarity=0.156 Sum_probs=66.0
Q ss_pred HHHHHHHHhhCCCCCeEEEEcCCcchhHHHHHhcC--CcEEEEcCCHHHHHHHHcC-----CCceEEecCCccchhhhhh
Q 024647 21 EELFKFITSKTTNHELAWDVGTGSGQAAASLSGIF--ENVIGTETSPKQIEFATKL-----PNIRYELTSPAMSIAELEQ 93 (265)
Q Consensus 21 ~~l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~~~~~d~~~ 93 (265)
+.+++.+...++++.+|+|||||.==++..+.... ..++|+|++..+++..... .+.+... .|+..
T Consensus 93 d~fY~~if~~~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v-------~Dl~~ 165 (251)
T PF07091_consen 93 DEFYDEIFGRIPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARV-------RDLLS 165 (251)
T ss_dssp HHHHHHHCCCS---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEE-------E-TTT
T ss_pred HHHHHHHHhcCCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeE-------eeeec
Confidence 45556666666778999999999988888877654 4799999999999987652 3333433 33332
Q ss_pred ccCCCCceeEEEeccccccCChhH--HHHHHHHHhcCCCcEEEEEecC
Q 024647 94 NVAAQSTVDLVTIAQAMHWFDLPQ--FYNQVKWVLKKPNGVIATWCYT 139 (265)
Q Consensus 94 ~~~~~~~~Dlv~~~~~~~~~~~~~--~l~~~~~~Lk~pgG~l~~~~~~ 139 (265)
- .+..+.|+.+..=.+|.++.+. ..-++...++ .=.++++.+.
T Consensus 166 ~-~~~~~~DlaLllK~lp~le~q~~g~g~~ll~~~~--~~~~vVSfPt 210 (251)
T PF07091_consen 166 D-PPKEPADLALLLKTLPCLERQRRGAGLELLDALR--SPHVVVSFPT 210 (251)
T ss_dssp S-HTTSEESEEEEET-HHHHHHHSTTHHHHHHHHSC--ESEEEEEEES
T ss_pred c-CCCCCcchhhHHHHHHHHHHHhcchHHHHHHHhC--CCeEEEeccc
Confidence 2 2567899999988888775432 2233334443 2244555543
No 262
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=96.76 E-value=0.0029 Score=51.77 Aligned_cols=57 Identities=23% Similarity=0.285 Sum_probs=45.4
Q ss_pred CCCCcHHHHHHHHhhC-CCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHH
Q 024647 16 RPNYPEELFKFITSKT-TNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFAT 72 (265)
Q Consensus 16 rp~y~~~l~~~l~~~~-~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~ 72 (265)
--..|.++++++.... ++++.|||-=||+|+.+.+..+.+.+.+|+|+++..++.|+
T Consensus 173 ~~~kP~~l~~~lI~~~t~~gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~~~~y~~~a~ 230 (231)
T PF01555_consen 173 PTQKPVELIERLIKASTNPGDIVLDPFAGSGTTAVAAEELGRRYIGIEIDEEYCEIAK 230 (231)
T ss_dssp TT-S-HHHHHHHHHHHS-TT-EEEETT-TTTHHHHHHHHTT-EEEEEESSHHHHHHHH
T ss_pred eecCCHHHHHHHHHhhhccceeeehhhhccChHHHHHHHcCCeEEEEeCCHHHHHHhc
Confidence 3456889999987654 68899999999999999999999999999999999999886
No 263
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=96.74 E-value=0.02 Score=51.14 Aligned_cols=105 Identities=16% Similarity=0.150 Sum_probs=69.4
Q ss_pred CCCCeEEEEcCCc-chhHHHHHhcCC--cEEEEcCCHHHHHHHHcCCCceEEecCCc-cchhhhhhccCCCCceeEEEec
Q 024647 32 TNHELAWDVGTGS-GQAAASLSGIFE--NVIGTETSPKQIEFATKLPNIRYELTSPA-MSIAELEQNVAAQSTVDLVTIA 107 (265)
Q Consensus 32 ~~~~~vlDvGcG~-G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~-~~~~d~~~~~~~~~~~Dlv~~~ 107 (265)
.++.+||.+|||+ |..+..+++... +++++|.++++++.+++..+...+..... .....+..+ .....+|+|+..
T Consensus 183 ~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~l~~~-~~~~~~D~vld~ 261 (386)
T cd08283 183 KPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGAETINFEEVDDVVEALREL-TGGRGPDVCIDA 261 (386)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcEEEcCCcchHHHHHHHHH-cCCCCCCEEEEC
Confidence 4567899999998 888888887653 59999999999999887533433321110 001112222 233469999875
Q ss_pred ccc---------------ccC-ChhHHHHHHHHHhcCCCcEEEEEec
Q 024647 108 QAM---------------HWF-DLPQFYNQVKWVLKKPNGVIATWCY 138 (265)
Q Consensus 108 ~~~---------------~~~-~~~~~l~~~~~~Lk~pgG~l~~~~~ 138 (265)
..- +-. +....+.++.+.|+ ++|.++....
T Consensus 262 vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~G~iv~~g~ 307 (386)
T cd08283 262 VGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVR-KGGTVSIIGV 307 (386)
T ss_pred CCCcccccccccccccccccccCchHHHHHHHHHhc-cCCEEEEEcC
Confidence 321 111 34668899999999 9999987543
No 264
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=96.68 E-value=0.013 Score=51.30 Aligned_cols=79 Identities=15% Similarity=0.213 Sum_probs=40.7
Q ss_pred CCCCCeEEEEcCCcchhHHHHHh--------cC---C-------cEEEEcCCHHHHHHH-----------HcCCCceEEe
Q 024647 31 TTNHELAWDVGTGSGQAAASLSG--------IF---E-------NVIGTETSPKQIEFA-----------TKLPNIRYEL 81 (265)
Q Consensus 31 ~~~~~~vlDvGcG~G~~~~~l~~--------~~---~-------~v~~vD~s~~~~~~a-----------~~~~~~~~~~ 81 (265)
.+...+|+|+||.+|..|..+.. ++ . .|+--|.-..=-... ....+ -|..
T Consensus 14 ~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~-~f~~ 92 (334)
T PF03492_consen 14 NPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRN-YFVS 92 (334)
T ss_dssp TTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTS-EEEE
T ss_pred CCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCce-EEEE
Confidence 35567899999999988887642 11 1 366666543221111 11122 2322
Q ss_pred cCCccchhhhhhccCCCCceeEEEeccccccCC
Q 024647 82 TSPAMSIAELEQNVAAQSTVDLVTIAQAMHWFD 114 (265)
Q Consensus 82 ~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~~ 114 (265)
+-+ +.+..--+|+++.|+++++.++||+.
T Consensus 93 gvp----gSFy~rLfP~~Svh~~~Ss~alHWLS 121 (334)
T PF03492_consen 93 GVP----GSFYGRLFPSNSVHFGHSSYALHWLS 121 (334)
T ss_dssp EEE----S-TTS--S-TT-EEEEEEES-TTB-S
T ss_pred ecC----chhhhccCCCCceEEEEEechhhhcc
Confidence 211 44444447999999999999999984
No 265
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.68 E-value=0.0014 Score=49.93 Aligned_cols=47 Identities=11% Similarity=0.232 Sum_probs=39.1
Q ss_pred hccCCCCceeEEEeccccccC---ChhHHHHHHHHHhcCCCcEEEEEecCC
Q 024647 93 QNVAAQSTVDLVTIAQAMHWF---DLPQFYNQVKWVLKKPNGVIATWCYTV 140 (265)
Q Consensus 93 ~~~~~~~~~Dlv~~~~~~~~~---~~~~~l~~~~~~Lk~pgG~l~~~~~~~ 140 (265)
..++.++++|+|.+...+.++ +-..++++|+|.|| |||.|-+..+..
T Consensus 40 e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lr-p~G~LriAvPdl 89 (185)
T COG4627 40 ESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLR-PGGKLRIAVPDL 89 (185)
T ss_pred hccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhC-cCcEEEEEcCCc
Confidence 345789999999999988776 33479999999999 999999977653
No 266
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=96.68 E-value=0.0081 Score=47.69 Aligned_cols=100 Identities=21% Similarity=0.090 Sum_probs=64.4
Q ss_pred CCCCCeEEEEcCCcchhHHHHHhcC-C--cEEEEcCCHH----------HHHHHHc--CCCceEEecCCccchhhhhhcc
Q 024647 31 TTNHELAWDVGTGSGQAAASLSGIF-E--NVIGTETSPK----------QIEFATK--LPNIRYELTSPAMSIAELEQNV 95 (265)
Q Consensus 31 ~~~~~~vlDvGcG~G~~~~~l~~~~-~--~v~~vD~s~~----------~~~~a~~--~~~~~~~~~~~~~~~~d~~~~~ 95 (265)
++++++|+|+=.|.|.+|+-++... + .|++.-+.+. +-..+++ +.|+.... .++-.++
T Consensus 46 lkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~-------~~~~A~~ 118 (238)
T COG4798 46 LKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIG-------KPLVALG 118 (238)
T ss_pred cCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhC-------CcccccC
Confidence 4678999999999999999998763 2 4666544433 2222221 23443333 2233343
Q ss_pred CCCCceeEEEeccccccC--------ChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647 96 AAQSTVDLVTIAQAMHWF--------DLPQFYNQVKWVLKKPNGVIATWCYT 139 (265)
Q Consensus 96 ~~~~~~Dlv~~~~~~~~~--------~~~~~l~~~~~~Lk~pgG~l~~~~~~ 139 (265)
+....|+++.++.-|-+ ...++..++++.|| |||++.+.+..
T Consensus 119 -~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LK-PGGv~~V~dH~ 168 (238)
T COG4798 119 -APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALK-PGGVYLVEDHR 168 (238)
T ss_pred -CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcC-CCcEEEEEecc
Confidence 45567887775543322 23578899999999 99999987664
No 267
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=96.63 E-value=0.019 Score=52.97 Aligned_cols=104 Identities=17% Similarity=0.159 Sum_probs=68.1
Q ss_pred CCCeEEEEcCCc-chhHHHHHhc-CCcEEEEcCCHHHHHHHHcCCCceEEecCCcc-----------chhhh-----hhc
Q 024647 33 NHELAWDVGTGS-GQAAASLSGI-FENVIGTETSPKQIEFATKLPNIRYELTSPAM-----------SIAEL-----EQN 94 (265)
Q Consensus 33 ~~~~vlDvGcG~-G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~-----------~~~d~-----~~~ 94 (265)
++.+|+-+|||. |..+...++. +++|+++|.++..+++++.+ +.++...+..- ...+. +.+
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aesl-GA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~ 242 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESM-GAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMALF 242 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc-CCeEEEeccccccccccchhhhcchhHHHHHHHHH
Confidence 578999999998 8888877765 67899999999999999875 34433211100 00010 000
Q ss_pred cCCCCceeEEEeccccccCChhHH-HHHHHHHhcCCCcEEEEEec
Q 024647 95 VAAQSTVDLVTIAQAMHWFDLPQF-YNQVKWVLKKPNGVIATWCY 138 (265)
Q Consensus 95 ~~~~~~~Dlv~~~~~~~~~~~~~~-l~~~~~~Lk~pgG~l~~~~~ 138 (265)
......+|+|+..-...--..+.+ .+++.+.+| |||+++....
T Consensus 243 ~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mk-pGgvIVdvg~ 286 (509)
T PRK09424 243 AEQAKEVDIIITTALIPGKPAPKLITAEMVASMK-PGSVIVDLAA 286 (509)
T ss_pred HhccCCCCEEEECCCCCcccCcchHHHHHHHhcC-CCCEEEEEcc
Confidence 001146999998755433222344 599999999 9999886544
No 268
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=96.61 E-value=0.015 Score=43.19 Aligned_cols=91 Identities=21% Similarity=0.170 Sum_probs=64.0
Q ss_pred CcchhHHHHHhc-CCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEeccccccCChhHHHHH
Q 024647 43 GSGQAAASLSGI-FENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWFDLPQFYNQ 121 (265)
Q Consensus 43 G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~~~~~~l~~ 121 (265)
|.|..+..+++. +.+|+++|.++.-++.++++....+....-......+..+ .+...+|+|+-. ......++.
T Consensus 1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~Ga~~~~~~~~~~~~~~i~~~-~~~~~~d~vid~-----~g~~~~~~~ 74 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKELGADHVIDYSDDDFVEQIREL-TGGRGVDVVIDC-----VGSGDTLQE 74 (130)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTESEEEETTTSSHHHHHHHH-TTTSSEEEEEES-----SSSHHHHHH
T ss_pred ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHhhcccccccccccccccccccc-cccccceEEEEe-----cCcHHHHHH
Confidence 457888888875 5689999999999999998643333333221122333333 244589999965 334689999
Q ss_pred HHHHhcCCCcEEEEEecCC
Q 024647 122 VKWVLKKPNGVIATWCYTV 140 (265)
Q Consensus 122 ~~~~Lk~pgG~l~~~~~~~ 140 (265)
+..+|+ ++|++++.....
T Consensus 75 ~~~~l~-~~G~~v~vg~~~ 92 (130)
T PF00107_consen 75 AIKLLR-PGGRIVVVGVYG 92 (130)
T ss_dssp HHHHEE-EEEEEEEESSTS
T ss_pred HHHHhc-cCCEEEEEEccC
Confidence 999999 999999876654
No 269
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.60 E-value=0.0027 Score=51.54 Aligned_cols=115 Identities=17% Similarity=0.188 Sum_probs=74.2
Q ss_pred CCCeEEEEcCCcchhHHHHHhcC--------C---cEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhc--cCCCC
Q 024647 33 NHELAWDVGTGSGQAAASLSGIF--------E---NVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQN--VAAQS 99 (265)
Q Consensus 33 ~~~~vlDvGcG~G~~~~~l~~~~--------~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~--~~~~~ 99 (265)
.-.+++|+.+-+|..++-|.++. . +|++||+.+- ...+++.-.+++++-. ..++.+ .+..+
T Consensus 41 gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~M-----aPI~GV~qlq~DIT~~-stae~Ii~hfgge 114 (294)
T KOG1099|consen 41 GVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPM-----APIEGVIQLQGDITSA-STAEAIIEHFGGE 114 (294)
T ss_pred hhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccC-----CccCceEEeecccCCH-hHHHHHHHHhCCC
Confidence 34679999999999999887642 1 2999998654 2345666666443211 111221 14567
Q ss_pred ceeEEEecc-----ccccCCh-------hHHHHHHHHHhcCCCcEEEEEecCCCCC---ChHHHHhhccc
Q 024647 100 TVDLVTIAQ-----AMHWFDL-------PQFYNQVKWVLKKPNGVIATWCYTVPEV---NVSVDAVFQPF 154 (265)
Q Consensus 100 ~~Dlv~~~~-----~~~~~~~-------~~~l~~~~~~Lk~pgG~l~~~~~~~~~~---~~~~~~~~~~~ 154 (265)
+.|+|+|.. .+|-+|. -.+++-...+|+ |||.|+.-.++.... ...++..|..+
T Consensus 115 kAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk-~Gg~FVaKifRg~~tslLysql~~ff~kv 183 (294)
T KOG1099|consen 115 KADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLK-PGGSFVAKIFRGRDTSLLYSQLRKFFKKV 183 (294)
T ss_pred CccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheec-CCCeeehhhhccCchHHHHHHHHHHhhce
Confidence 899999966 6787752 256777889999 999999755543322 44555555443
No 270
>PRK10742 putative methyltransferase; Provisional
Probab=96.53 E-value=0.02 Score=47.58 Aligned_cols=91 Identities=13% Similarity=0.019 Sum_probs=57.2
Q ss_pred eEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHc---C----CCceE-EecCCccchhhhhhc-cCCCCceeEEEe
Q 024647 36 LAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATK---L----PNIRY-ELTSPAMSIAELEQN-VAAQSTVDLVTI 106 (265)
Q Consensus 36 ~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~---~----~~~~~-~~~~~~~~~~d~~~~-~~~~~~~Dlv~~ 106 (265)
+|||+-+|+|..+..++.++++|+++|-++.+....+. . +.+.. .....+++.+|...+ .....+||+|+.
T Consensus 91 ~VLD~TAGlG~Da~~las~G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~~~fDVVYl 170 (250)
T PRK10742 91 DVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVVYL 170 (250)
T ss_pred EEEECCCCccHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCCCCCcEEEE
Confidence 89999999999999999999999999999998876553 1 01010 001223333444333 212347999998
Q ss_pred ccccccCChhHHHHHHHHHh
Q 024647 107 AQAMHWFDLPQFYNQVKWVL 126 (265)
Q Consensus 107 ~~~~~~~~~~~~l~~~~~~L 126 (265)
.-.+.+-...+..++-.|++
T Consensus 171 DPMfp~~~ksa~vkk~mr~~ 190 (250)
T PRK10742 171 DPMFPHKQKSALVKKEMRVF 190 (250)
T ss_pred CCCCCCCccccchhhhHHHH
Confidence 87766543333333333444
No 271
>PRK11524 putative methyltransferase; Provisional
Probab=96.49 E-value=0.008 Score=51.44 Aligned_cols=57 Identities=23% Similarity=0.234 Sum_probs=50.6
Q ss_pred CCcHHHHHHHHhhC-CCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcC
Q 024647 18 NYPEELFKFITSKT-TNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKL 74 (265)
Q Consensus 18 ~y~~~l~~~l~~~~-~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~ 74 (265)
..|.+|++.+.... .+++.|||-=||+|+.+.+..+.+.+.+|+|++++-++.|+++
T Consensus 192 ~kP~~L~erlI~~~S~~GD~VLDPF~GSGTT~~AA~~lgR~~IG~Ei~~~Y~~~a~~R 249 (284)
T PRK11524 192 QKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAKASGRKFIGIEINSEYIKMGLRR 249 (284)
T ss_pred cChHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHcCCCEEEEeCCHHHHHHHHHH
Confidence 55788999877654 7889999999999999999999999999999999999988753
No 272
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=96.34 E-value=0.013 Score=47.62 Aligned_cols=90 Identities=20% Similarity=0.113 Sum_probs=54.8
Q ss_pred EEEEcCCcchhHHHHHhcCC--cEEEEcCCHHHHHHHHcC-------CCceEEecCCccchhhhhhccCCCCceeEEEec
Q 024647 37 AWDVGTGSGQAAASLSGIFE--NVIGTETSPKQIEFATKL-------PNIRYELTSPAMSIAELEQNVAAQSTVDLVTIA 107 (265)
Q Consensus 37 vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~ 107 (265)
|.||||--|.++..|.+.+. +++++|+++.-++.|+.. ..+....+++ ++.++ +.+..|.|+.+
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdG------L~~l~-~~e~~d~ivIA 73 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDG------LEVLK-PGEDVDTIVIA 73 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SG------GGG---GGG---EEEEE
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCc------ccccC-CCCCCCEEEEe
Confidence 68999999999999999875 799999999999998751 3577777432 34342 33337888865
Q ss_pred cccccCChhHHHHHHHHHhcCCCcEEEE
Q 024647 108 QAMHWFDLPQFYNQVKWVLKKPNGVIAT 135 (265)
Q Consensus 108 ~~~~~~~~~~~l~~~~~~Lk~pgG~l~~ 135 (265)
..--- -....+.+....++ ....|++
T Consensus 74 GMGG~-lI~~ILe~~~~~~~-~~~~lIL 99 (205)
T PF04816_consen 74 GMGGE-LIIEILEAGPEKLS-SAKRLIL 99 (205)
T ss_dssp EE-HH-HHHHHHHHTGGGGT-T--EEEE
T ss_pred cCCHH-HHHHHHHhhHHHhc-cCCeEEE
Confidence 42110 01245555555565 4556665
No 273
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=96.30 E-value=0.032 Score=45.10 Aligned_cols=117 Identities=14% Similarity=0.175 Sum_probs=61.2
Q ss_pred CCcHHHHH--HHHhhCCCCCeEEEEcCCcchhHHHHHhc---C---CcEEEEcCCHHHHH-HHHcC----CCceEEecCC
Q 024647 18 NYPEELFK--FITSKTTNHELAWDVGTGSGQAAASLSGI---F---ENVIGTETSPKQIE-FATKL----PNIRYELTSP 84 (265)
Q Consensus 18 ~y~~~l~~--~l~~~~~~~~~vlDvGcG~G~~~~~l~~~---~---~~v~~vD~s~~~~~-~a~~~----~~~~~~~~~~ 84 (265)
.+|.+++. .|.... +++.|+|+|.-.|..+..+++. + .+|+|||++..... .+.+. +.+++.+++.
T Consensus 16 q~P~Dm~~~qeli~~~-kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds 94 (206)
T PF04989_consen 16 QYPQDMVAYQELIWEL-KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDS 94 (206)
T ss_dssp S-HHHHHHHHHHHHHH---SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-S
T ss_pred cCHHHHHHHHHHHHHh-CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCC
Confidence 45666543 344333 4488999999999999887652 3 57999999655443 22332 6899999765
Q ss_pred ccchhhhhhccC--CCCceeEEEeccccccC-ChhHHHHHHHHHhcCCCcEEEEEec
Q 024647 85 AMSIAELEQNVA--AQSTVDLVTIAQAMHWF-DLPQFYNQVKWVLKKPNGVIATWCY 138 (265)
Q Consensus 85 ~~~~~d~~~~~~--~~~~~Dlv~~~~~~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~~ 138 (265)
... +-+.+... ......+|+-. +-|-- +..+.|+....+++ +|+.+++.+.
T Consensus 95 ~d~-~~~~~v~~~~~~~~~vlVilD-s~H~~~hvl~eL~~y~plv~-~G~Y~IVeDt 148 (206)
T PF04989_consen 95 IDP-EIVDQVRELASPPHPVLVILD-SSHTHEHVLAELEAYAPLVS-PGSYLIVEDT 148 (206)
T ss_dssp SST-HHHHTSGSS----SSEEEEES-S----SSHHHHHHHHHHT---TT-EEEETSH
T ss_pred CCH-HHHHHHHHhhccCCceEEEEC-CCccHHHHHHHHHHhCccCC-CCCEEEEEec
Confidence 211 11222211 12234455543 33332 55678888899999 9999998543
No 274
>PHA01634 hypothetical protein
Probab=96.30 E-value=0.014 Score=43.06 Aligned_cols=71 Identities=13% Similarity=-0.051 Sum_probs=49.3
Q ss_pred CCCeEEEEcCCcchhHHHHHhcCC-cEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEec
Q 024647 33 NHELAWDVGTGSGQAAASLSGIFE-NVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIA 107 (265)
Q Consensus 33 ~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~ 107 (265)
.+.+|+|||++-|..+..++-+++ +|+++++++...+..++.-+...++..+ ..-..++-.-++||+....
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nnI~DK~----v~~~eW~~~Y~~~Di~~iD 99 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFNICDKA----VMKGEWNGEYEDVDIFVMD 99 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhheeeece----eecccccccCCCcceEEEE
Confidence 568899999999999999999988 5999999999999887521111122111 1112344445678887753
No 275
>PRK13699 putative methylase; Provisional
Probab=96.19 E-value=0.017 Score=47.78 Aligned_cols=56 Identities=16% Similarity=0.128 Sum_probs=49.5
Q ss_pred CCcHHHHHHHHhh-CCCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHc
Q 024647 18 NYPEELFKFITSK-TTNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATK 73 (265)
Q Consensus 18 ~y~~~l~~~l~~~-~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~ 73 (265)
..|.++++.+... ..+++.|||-=||+|+...+..+.+.+.+|+|+++...+.+.+
T Consensus 147 ~kP~~l~~~~i~~~s~~g~~vlDpf~Gsgtt~~aa~~~~r~~~g~e~~~~y~~~~~~ 203 (227)
T PRK13699 147 EKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAGQQ 203 (227)
T ss_pred CCcHHHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHcCCCEEEEecCHHHHHHHHH
Confidence 5688999988754 4688999999999999999999999999999999999988864
No 276
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=96.16 E-value=0.017 Score=48.90 Aligned_cols=101 Identities=17% Similarity=0.183 Sum_probs=72.2
Q ss_pred CCCCCeEEEEcCCcchhHHHHHhc--CCcEEEEcCCHHHHHHHHcC----------CCceEEecCCccchhhhhhccCCC
Q 024647 31 TTNHELAWDVGTGSGQAAASLSGI--FENVIGTETSPKQIEFATKL----------PNIRYELTSPAMSIAELEQNVAAQ 98 (265)
Q Consensus 31 ~~~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~----------~~~~~~~~~~~~~~~d~~~~~~~~ 98 (265)
.+.+++||-||-|.|.+.+..+++ ..+++-+|++...++..+++ +.+....+++ ..+-+. ...
T Consensus 119 ~~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG----~~fl~~-~~~ 193 (337)
T KOG1562|consen 119 HPNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDG----FLFLED-LKE 193 (337)
T ss_pred CCCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccH----HHHHHH-hcc
Confidence 466789999999999999988876 34799999999999887752 4566666543 222222 246
Q ss_pred CceeEEEeccccccCC-----hhHHHHHHHHHhcCCCcEEEEEe
Q 024647 99 STVDLVTIAQAMHWFD-----LPQFYNQVKWVLKKPNGVIATWC 137 (265)
Q Consensus 99 ~~~Dlv~~~~~~~~~~-----~~~~l~~~~~~Lk~pgG~l~~~~ 137 (265)
++||+|+....=.-.+ ....+..+.+.|| |||++++..
T Consensus 194 ~~~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk-~dgv~~~q~ 236 (337)
T KOG1562|consen 194 NPFDVIITDSSDPVGPACALFQKPYFGLVLDALK-GDGVVCTQG 236 (337)
T ss_pred CCceEEEEecCCccchHHHHHHHHHHHHHHHhhC-CCcEEEEec
Confidence 7999999754222111 1357788999999 999998744
No 277
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=96.14 E-value=0.021 Score=49.11 Aligned_cols=89 Identities=15% Similarity=0.219 Sum_probs=57.4
Q ss_pred hCCCCcHHHHHHHHhhCCCCCeEEEEcCCcchhHHHHHhcCC--cEEEEcCCHHHHHHHHcC-----CCceEEecCCccc
Q 024647 15 TRPNYPEELFKFITSKTTNHELAWDVGTGSGQAAASLSGIFE--NVIGTETSPKQIEFATKL-----PNIRYELTSPAMS 87 (265)
Q Consensus 15 ~rp~y~~~l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~~~ 87 (265)
+.|..-.+.++.|. ..++..++|.--|.|..+..+++..+ +++|+|.++.+++.+++. .++.+...+.
T Consensus 4 H~PVll~Evl~~L~--~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F--- 78 (310)
T PF01795_consen 4 HIPVLLKEVLEALN--PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNF--- 78 (310)
T ss_dssp ---TTHHHHHHHHT----TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-G---
T ss_pred eecccHHHHHHhhC--cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccH---
Confidence 56888888888876 34567899999999999999998754 799999999999988753 4566666554
Q ss_pred hhhhhhcc--C-CCCceeEEEeccc
Q 024647 88 IAELEQNV--A-AQSTVDLVTIAQA 109 (265)
Q Consensus 88 ~~d~~~~~--~-~~~~~Dlv~~~~~ 109 (265)
.++...- . ....+|.|+....
T Consensus 79 -~~l~~~l~~~~~~~~~dgiL~DLG 102 (310)
T PF01795_consen 79 -SNLDEYLKELNGINKVDGILFDLG 102 (310)
T ss_dssp -GGHHHHHHHTTTTS-EEEEEEE-S
T ss_pred -HHHHHHHHHccCCCccCEEEEccc
Confidence 2322221 1 3357888887663
No 278
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=95.96 E-value=0.027 Score=48.03 Aligned_cols=120 Identities=17% Similarity=0.177 Sum_probs=72.2
Q ss_pred hCCCCcHHHHHHHHhhCCC------CCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHH-------Hc------C-
Q 024647 15 TRPNYPEELFKFITSKTTN------HELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFA-------TK------L- 74 (265)
Q Consensus 15 ~rp~y~~~l~~~l~~~~~~------~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a-------~~------~- 74 (265)
-|...-.-+++.|.+..++ ..+||-=|||.|.++..|+..+.++-|=|.|--|+=.. +. +
T Consensus 126 ERd~~ykpii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYP 205 (369)
T KOG2798|consen 126 ERDQLYKPIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGFKCQGNEFSYFMLICSSFILNYCKQENQFTIYP 205 (369)
T ss_pred hhhhhhhhHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhcccccccHHHHHHHHHHHHHHHhhccCCcEEEEe
Confidence 4443345567777766554 45799999999999999999988888878877775422 11 0
Q ss_pred --------------------CCceEE-----ecCCccchhhhhhc-c--CCCCceeEEEeccccccC-ChhHHHHHHHHH
Q 024647 75 --------------------PNIRYE-----LTSPAMSIAELEQN-V--AAQSTVDLVTIAQAMHWF-DLPQFYNQVKWV 125 (265)
Q Consensus 75 --------------------~~~~~~-----~~~~~~~~~d~~~~-~--~~~~~~Dlv~~~~~~~~~-~~~~~l~~~~~~ 125 (265)
+.+.-. ..+..+-.||+-.. + ...+++|+|+..+-+--- +.-..++.+..+
T Consensus 206 fIh~~sn~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~NileYi~tI~~i 285 (369)
T KOG2798|consen 206 FIHQYSNSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAHNILEYIDTIYKI 285 (369)
T ss_pred eeeccccccccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechHHHHHHHHHHHHh
Confidence 000000 00000111232221 1 122469999877433322 344789999999
Q ss_pred hcCCCcEEEE
Q 024647 126 LKKPNGVIAT 135 (265)
Q Consensus 126 Lk~pgG~l~~ 135 (265)
|+ |||+.+=
T Consensus 286 Lk-~GGvWiN 294 (369)
T KOG2798|consen 286 LK-PGGVWIN 294 (369)
T ss_pred cc-CCcEEEe
Confidence 99 9998763
No 279
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=95.89 E-value=0.1 Score=45.77 Aligned_cols=92 Identities=14% Similarity=0.117 Sum_probs=60.8
Q ss_pred CCCCeEEEEcCCc-chhHHHHHhc---CCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEec
Q 024647 32 TNHELAWDVGTGS-GQAAASLSGI---FENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIA 107 (265)
Q Consensus 32 ~~~~~vlDvGcG~-G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~ 107 (265)
.++++||-+|||. |.++..++++ ..+|+++|.++.-++.++.. +..... .+ +. ....+|+|+-.
T Consensus 162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~-~~~~~~-------~~---~~-~~~g~d~viD~ 229 (341)
T cd08237 162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFA-DETYLI-------DD---IP-EDLAVDHAFEC 229 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhc-Cceeeh-------hh---hh-hccCCcEEEEC
Confidence 4578999999986 7777676664 24799999999988888752 221111 11 11 11248988854
Q ss_pred cccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647 108 QAMHWFDLPQFYNQVKWVLKKPNGVIATWCY 138 (265)
Q Consensus 108 ~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~ 138 (265)
..-. .....+++..++|+ +||++++...
T Consensus 230 ~G~~--~~~~~~~~~~~~l~-~~G~iv~~G~ 257 (341)
T cd08237 230 VGGR--GSQSAINQIIDYIR-PQGTIGLMGV 257 (341)
T ss_pred CCCC--ccHHHHHHHHHhCc-CCcEEEEEee
Confidence 3210 02467899999999 9999987654
No 280
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=95.89 E-value=0.076 Score=44.24 Aligned_cols=104 Identities=11% Similarity=0.007 Sum_probs=63.5
Q ss_pred CCCeEEEEcCCcchhHHHHHhc-CCcEEEEcCCHHHHHHHHc--C-----CC--ceEEecCCccchhhhhhccCCCCcee
Q 024647 33 NHELAWDVGTGSGQAAASLSGI-FENVIGTETSPKQIEFATK--L-----PN--IRYELTSPAMSIAELEQNVAAQSTVD 102 (265)
Q Consensus 33 ~~~~vlDvGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~--~-----~~--~~~~~~~~~~~~~d~~~~~~~~~~~D 102 (265)
...+|||+|.|+|..+...+.. +++|...|+...+...... . .+ .........|-.........+ ..+|
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~-~~~D 164 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLP-NPFD 164 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccC-Cccc
Confidence 4567999999999888888774 5688888887766543221 1 11 011111111111111111112 1299
Q ss_pred EEEeccccccC-ChhHHHHHHHHHhcCCCcEEEEEec
Q 024647 103 LVTIAQAMHWF-DLPQFYNQVKWVLKKPNGVIATWCY 138 (265)
Q Consensus 103 lv~~~~~~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~~ 138 (265)
+|+++.++... ..+.+...++..|. -+|++.+..+
T Consensus 165 lilasDvvy~~~~~e~Lv~tla~ll~-~~~~i~l~~~ 200 (248)
T KOG2793|consen 165 LILASDVVYEEESFEGLVKTLAFLLA-KDGTIFLAYP 200 (248)
T ss_pred EEEEeeeeecCCcchhHHHHHHHHHh-cCCeEEEEEe
Confidence 99999988776 67788888889998 6885544443
No 281
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=95.81 E-value=0.13 Score=45.31 Aligned_cols=100 Identities=16% Similarity=0.201 Sum_probs=63.7
Q ss_pred CCCCeEEEEcCCc-chhHHHHHhc-CC-cEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEecc
Q 024647 32 TNHELAWDVGTGS-GQAAASLSGI-FE-NVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQ 108 (265)
Q Consensus 32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~ 108 (265)
.++++||-.|||. |.++..+++. +. +|+++|.++..++.++++..-......-......+... .....+|+|+-..
T Consensus 175 ~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~i~~~-~~~~g~d~vid~~ 253 (358)
T TIGR03451 175 KRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGATHTVNSSGTDPVEAIRAL-TGGFGADVVIDAV 253 (358)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEcCCCcCHHHHHHHH-hCCCCCCEEEECC
Confidence 4678899899876 7777777765 44 49999999999998876532222221110000112222 1334689888542
Q ss_pred ccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647 109 AMHWFDLPQFYNQVKWVLKKPNGVIATWCY 138 (265)
Q Consensus 109 ~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~ 138 (265)
.-...+..+.+.|+ +||++++...
T Consensus 254 -----g~~~~~~~~~~~~~-~~G~iv~~G~ 277 (358)
T TIGR03451 254 -----GRPETYKQAFYARD-LAGTVVLVGV 277 (358)
T ss_pred -----CCHHHHHHHHHHhc-cCCEEEEECC
Confidence 22457788889999 9999987654
No 282
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=95.79 E-value=0.13 Score=44.55 Aligned_cols=99 Identities=17% Similarity=0.175 Sum_probs=64.6
Q ss_pred CCCCeEEEEcCCc-chhHHHHHhc-CCcEEEEcCCHHHHHHHHcCCCceEEecCCcc-chhhhhhccCCCCceeEEEecc
Q 024647 32 TNHELAWDVGTGS-GQAAASLSGI-FENVIGTETSPKQIEFATKLPNIRYELTSPAM-SIAELEQNVAAQSTVDLVTIAQ 108 (265)
Q Consensus 32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~-~~~d~~~~~~~~~~~Dlv~~~~ 108 (265)
.++.+||..|||. |..+..+++. +.+|++++.++...+.+++.. +.......+. ....+ . ......+|+++..
T Consensus 164 ~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~~g-~~~~~~~~~~~~~~~~-~-~~~~~~~D~vid~- 239 (338)
T cd08254 164 KPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKELG-ADEVLNSLDDSPKDKK-A-AGLGGGFDVIFDF- 239 (338)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhC-CCEEEcCCCcCHHHHH-H-HhcCCCceEEEEC-
Confidence 4567888888874 7777777764 567999999999998886532 3222211110 00111 1 1245579998854
Q ss_pred ccccCChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647 109 AMHWFDLPQFYNQVKWVLKKPNGVIATWCYT 139 (265)
Q Consensus 109 ~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~~ 139 (265)
......+.++.+.|+ ++|.++.....
T Consensus 240 ----~g~~~~~~~~~~~l~-~~G~~v~~g~~ 265 (338)
T cd08254 240 ----VGTQPTFEDAQKAVK-PGGRIVVVGLG 265 (338)
T ss_pred ----CCCHHHHHHHHHHhh-cCCEEEEECCC
Confidence 223568889999999 99999876543
No 283
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=95.70 E-value=0.14 Score=40.66 Aligned_cols=122 Identities=16% Similarity=0.168 Sum_probs=78.1
Q ss_pred hCCC--CcHHHH--HHHHhhCCCCCeEEEEcCCcchhHHHHHh----cC--CcEEEEcCCHHHHHH-HHcCCCceEEecC
Q 024647 15 TRPN--YPEELF--KFITSKTTNHELAWDVGTGSGQAAASLSG----IF--ENVIGTETSPKQIEF-ATKLPNIRYELTS 83 (265)
Q Consensus 15 ~rp~--y~~~l~--~~l~~~~~~~~~vlDvGcG~G~~~~~l~~----~~--~~v~~vD~s~~~~~~-a~~~~~~~~~~~~ 83 (265)
.+|. ||.++. +.|.... ++..|+|.|.-.|..+...+. .+ .+|+++|++-..++- |++.+.+.|++++
T Consensus 48 G~p~~k~p~D~~~yQellw~~-~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e~p~i~f~egs 126 (237)
T COG3510 48 GIPCIKSPSDMWNYQELLWEL-QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAREVPDILFIEGS 126 (237)
T ss_pred cccccCCHHHHHHHHHHHHhc-CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhcCCCeEEEeCC
Confidence 5663 466653 3354443 447899999999988888765 34 479999999887653 4446899999976
Q ss_pred Cccchhhhhhcc-CCCCceeEEEeccccccCC-hhHHHHHHHHHhcCCCcEEEEEecC
Q 024647 84 PAMSIAELEQNV-AAQSTVDLVTIAQAMHWFD-LPQFYNQVKWVLKKPNGVIATWCYT 139 (265)
Q Consensus 84 ~~~~~~d~~~~~-~~~~~~Dlv~~~~~~~~~~-~~~~l~~~~~~Lk~pgG~l~~~~~~ 139 (265)
...- +-.++.. ...+.--+.+|-.+-|..+ .-+.++....+|. .|-.+++.+..
T Consensus 127 s~dp-ai~eqi~~~~~~y~kIfvilDsdHs~~hvLAel~~~~plls-aG~Y~vVeDs~ 182 (237)
T COG3510 127 STDP-AIAEQIRRLKNEYPKIFVILDSDHSMEHVLAELKLLAPLLS-AGDYLVVEDSN 182 (237)
T ss_pred CCCH-HHHHHHHHHhcCCCcEEEEecCCchHHHHHHHHHHhhhHhh-cCceEEEeccc
Confidence 5221 1122222 2233334444555667663 3456777788888 79888886553
No 284
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=95.61 E-value=0.06 Score=44.30 Aligned_cols=110 Identities=20% Similarity=0.151 Sum_probs=71.9
Q ss_pred CcHHHHHHHHhh-----CCCCCeEEEEcCCcchhHHHHHhcC-C--cEEEEcCCHH----HHHHHHcCCCceEEecCCcc
Q 024647 19 YPEELFKFITSK-----TTNHELAWDVGTGSGQAAASLSGIF-E--NVIGTETSPK----QIEFATKLPNIRYELTSPAM 86 (265)
Q Consensus 19 y~~~l~~~l~~~-----~~~~~~vlDvGcG~G~~~~~l~~~~-~--~v~~vD~s~~----~~~~a~~~~~~~~~~~~~~~ 86 (265)
|..+|..-|+-- .+++.+||-+|+++|+...++.+.. + -|++||.|+. .+..|++++|+-=+.
T Consensus 137 frSKLAA~I~gGvdnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtNiiPIi----- 211 (317)
T KOG1596|consen 137 FRSKLAAGILGGVDNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTNIIPII----- 211 (317)
T ss_pred HHHHHHHHhhcCccceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccCCceeee-----
Confidence 456666666542 3678899999999999999998864 3 3999999875 455677778875555
Q ss_pred chhhhhh---ccCCCCceeEEEeccccccCChh-HHHHHHHHHhcCCCcEEEEEec
Q 024647 87 SIAELEQ---NVAAQSTVDLVTIAQAMHWFDLP-QFYNQVKWVLKKPNGVIATWCY 138 (265)
Q Consensus 87 ~~~d~~~---~~~~~~~~Dlv~~~~~~~~~~~~-~~l~~~~~~Lk~pgG~l~~~~~ 138 (265)
+|+.. ....-+-+|+|++.-+ ..|.. .+.-++..-|| +||-+++..-
T Consensus 212 --EDArhP~KYRmlVgmVDvIFaDva--qpdq~RivaLNA~~FLk-~gGhfvisik 262 (317)
T KOG1596|consen 212 --EDARHPAKYRMLVGMVDVIFADVA--QPDQARIVALNAQYFLK-NGGHFVISIK 262 (317)
T ss_pred --ccCCCchheeeeeeeEEEEeccCC--Cchhhhhhhhhhhhhhc-cCCeEEEEEe
Confidence 33321 1112235677776522 11222 24556778899 9999988544
No 285
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=95.58 E-value=0.18 Score=43.87 Aligned_cols=99 Identities=18% Similarity=0.176 Sum_probs=62.5
Q ss_pred CCCCeEEEEcCCc-chhHHHHHhc-CCc-EEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEecc
Q 024647 32 TNHELAWDVGTGS-GQAAASLSGI-FEN-VIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQ 108 (265)
Q Consensus 32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~ 108 (265)
.++++||-+|+|. |.++..+++. +.+ |++++.+++.++.++++.-..+....... ...+.+. .....+|+|+-.
T Consensus 162 ~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga~~~i~~~~~~-~~~~~~~-~~~~~~d~vid~- 238 (339)
T cd08239 162 SGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGADFVINSGQDD-VQEIREL-TSGAGADVAIEC- 238 (339)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCCcch-HHHHHHH-hCCCCCCEEEEC-
Confidence 4577888888875 6666666654 567 99999999988888764322222211100 1112222 133469999854
Q ss_pred ccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647 109 AMHWFDLPQFYNQVKWVLKKPNGVIATWCY 138 (265)
Q Consensus 109 ~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~ 138 (265)
......+..+.+.|+ ++|++++...
T Consensus 239 ----~g~~~~~~~~~~~l~-~~G~~v~~g~ 263 (339)
T cd08239 239 ----SGNTAARRLALEAVR-PWGRLVLVGE 263 (339)
T ss_pred ----CCCHHHHHHHHHHhh-cCCEEEEEcC
Confidence 223456778889999 9999987654
No 286
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=95.53 E-value=0.012 Score=42.13 Aligned_cols=33 Identities=18% Similarity=0.103 Sum_probs=28.5
Q ss_pred CCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCH
Q 024647 33 NHELAWDVGTGSGQAAASLSGIFENVIGTETSP 65 (265)
Q Consensus 33 ~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~ 65 (265)
+....+|+|||.|.+.--|.+.+.+=.|+|.-.
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~EGy~G~GiD~R~ 90 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSEGYPGWGIDARR 90 (112)
T ss_pred CCCceEEccCCchHHHHHHHhCCCCcccccccc
Confidence 346689999999999999999999888999643
No 287
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=95.52 E-value=0.07 Score=45.72 Aligned_cols=77 Identities=14% Similarity=0.135 Sum_probs=39.2
Q ss_pred CCeEEEEcCCcc-hhHHHHHh-cCCcEEEEcCCHHHHHHHHcC--------CCceEEecCCccchhh-hhhccCCCCcee
Q 024647 34 HELAWDVGTGSG-QAAASLSG-IFENVIGTETSPKQIEFATKL--------PNIRYELTSPAMSIAE-LEQNVAAQSTVD 102 (265)
Q Consensus 34 ~~~vlDvGcG~G-~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~--------~~~~~~~~~~~~~~~d-~~~~~~~~~~~D 102 (265)
.-++||||||.. .+...-++ .+.+++|+|+++..++.|++. ..+......-. .. +..+..+.+.||
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~---~~i~~~i~~~~e~~d 179 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNP---DNIFDGIIQPNERFD 179 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST----SSTTTSTT--S-EE
T ss_pred ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCc---cccchhhhcccceee
Confidence 357899999986 44444333 467999999999999999852 23555443210 11 111223456899
Q ss_pred EEEeccccccC
Q 024647 103 LVTIAQAMHWF 113 (265)
Q Consensus 103 lv~~~~~~~~~ 113 (265)
+.+|+-.+|-.
T Consensus 180 ftmCNPPFy~s 190 (299)
T PF05971_consen 180 FTMCNPPFYSS 190 (299)
T ss_dssp EEEE-----SS
T ss_pred EEecCCccccC
Confidence 99999887755
No 288
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=95.49 E-value=0.19 Score=44.57 Aligned_cols=99 Identities=12% Similarity=0.052 Sum_probs=63.1
Q ss_pred CCCCeEEEEcCCc-chhHHHHHhc-CC-cEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEecc
Q 024647 32 TNHELAWDVGTGS-GQAAASLSGI-FE-NVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQ 108 (265)
Q Consensus 32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~ 108 (265)
.++++||-.|+|. |.++..+++. +. +|+++|.++..++.++++....+....-......+... ..+.+|+|+-..
T Consensus 190 ~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~i~~~--~~~g~d~vid~~ 267 (371)
T cd08281 190 RPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGATATVNAGDPNAVEQVREL--TGGGVDYAFEMA 267 (371)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCCceEeCCCchhHHHHHHHH--hCCCCCEEEECC
Confidence 4567888899875 7777777764 55 59999999999998886432222221110000112222 123689998642
Q ss_pred ccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647 109 AMHWFDLPQFYNQVKWVLKKPNGVIATWCY 138 (265)
Q Consensus 109 ~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~ 138 (265)
.....+..+.+.|+ ++|+++....
T Consensus 268 -----G~~~~~~~~~~~l~-~~G~iv~~G~ 291 (371)
T cd08281 268 -----GSVPALETAYEITR-RGGTTVTAGL 291 (371)
T ss_pred -----CChHHHHHHHHHHh-cCCEEEEEcc
Confidence 22467888899999 9999987554
No 289
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=95.45 E-value=0.17 Score=44.58 Aligned_cols=95 Identities=22% Similarity=0.226 Sum_probs=62.2
Q ss_pred CCCCeEEEEcCCc-chhHHHHHhc-CCcEEEEcC---CHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEe
Q 024647 32 TNHELAWDVGTGS-GQAAASLSGI-FENVIGTET---SPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTI 106 (265)
Q Consensus 32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~~v~~vD~---s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~ 106 (265)
.++.+||-+|||. |.++..+++. +.+|++++. ++.-++.++++ +........ .+..+. ...+.+|+|+-
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~-Ga~~v~~~~----~~~~~~-~~~~~~d~vid 244 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEEL-GATYVNSSK----TPVAEV-KLVGEFDLIIE 244 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHc-CCEEecCCc----cchhhh-hhcCCCCEEEE
Confidence 3567899999986 7777777765 458999986 67777877764 333322111 111111 12246898886
Q ss_pred ccccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647 107 AQAMHWFDLPQFYNQVKWVLKKPNGVIATWCY 138 (265)
Q Consensus 107 ~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~ 138 (265)
.. .....+.++.++|+ +||.+++...
T Consensus 245 ~~-----g~~~~~~~~~~~l~-~~G~~v~~G~ 270 (355)
T cd08230 245 AT-----GVPPLAFEALPALA-PNGVVILFGV 270 (355)
T ss_pred Cc-----CCHHHHHHHHHHcc-CCcEEEEEec
Confidence 53 22457889999999 9999887554
No 290
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=95.30 E-value=0.042 Score=46.82 Aligned_cols=67 Identities=18% Similarity=0.065 Sum_probs=49.2
Q ss_pred eEEEEcCCcchhHHHHHhcCCc-EEEEcCCHHHHHHHHcC-CCceEEecCCccchhhhhhccCC--CCceeEEEecccc
Q 024647 36 LAWDVGTGSGQAAASLSGIFEN-VIGTETSPKQIEFATKL-PNIRYELTSPAMSIAELEQNVAA--QSTVDLVTIAQAM 110 (265)
Q Consensus 36 ~vlDvGcG~G~~~~~l~~~~~~-v~~vD~s~~~~~~a~~~-~~~~~~~~~~~~~~~d~~~~~~~--~~~~Dlv~~~~~~ 110 (265)
+++|+-||.|.++..+.+.+.+ +.++|+++..++..+.. ++. ... +|+.++... ...+|+++....+
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~~-~~~-------~Di~~~~~~~~~~~~D~l~~gpPC 72 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPNK-LIE-------GDITKIDEKDFIPDIDLLTGGFPC 72 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCCC-Ccc-------CccccCchhhcCCCCCEEEeCCCC
Confidence 5899999999999999988765 78999999999977753 332 223 455554321 3569999987744
No 291
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=95.26 E-value=0.26 Score=40.95 Aligned_cols=100 Identities=25% Similarity=0.209 Sum_probs=63.0
Q ss_pred CCCCeEEEEcCCc-chhHHHHHhc-CCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEeccc
Q 024647 32 TNHELAWDVGTGS-GQAAASLSGI-FENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQA 109 (265)
Q Consensus 32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~ 109 (265)
.++.+||..|+|+ |..+..+++. +.+|++++.++...+.++..................+. ....+.+|+++....
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~d~vi~~~~ 210 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELGADHVIDYKEEDLEEELR--LTGGGGADVVIDAVG 210 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCceeccCCcCCHHHHHH--HhcCCCCCEEEECCC
Confidence 4678899999996 6666666654 56899999999888877653211111111000001111 123457999986532
Q ss_pred cccCChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647 110 MHWFDLPQFYNQVKWVLKKPNGVIATWCYT 139 (265)
Q Consensus 110 ~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~~ 139 (265)
....+..+.+.|+ ++|.++.....
T Consensus 211 -----~~~~~~~~~~~l~-~~G~~v~~~~~ 234 (271)
T cd05188 211 -----GPETLAQALRLLR-PGGRIVVVGGT 234 (271)
T ss_pred -----CHHHHHHHHHhcc-cCCEEEEEccC
Confidence 2257888899999 99999875543
No 292
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=95.26 E-value=0.021 Score=48.38 Aligned_cols=100 Identities=17% Similarity=0.114 Sum_probs=66.0
Q ss_pred CCCCeEEEEcCCcchhHH-HHHhcCC-cEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEeccc
Q 024647 32 TNHELAWDVGTGSGQAAA-SLSGIFE-NVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQA 109 (265)
Q Consensus 32 ~~~~~vlDvGcG~G~~~~-~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~ 109 (265)
..+..|+|+=+|-|.+|. .+...++ .|.++|.+|..++..++...++.+.....++.+| ...+.++...|.|.....
T Consensus 193 c~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd-~R~~~~~~~AdrVnLGLl 271 (351)
T KOG1227|consen 193 CDGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGD-NRNPKPRLRADRVNLGLL 271 (351)
T ss_pred cccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhcc-ccccCccccchheeeccc
Confidence 344789999999999999 6777777 4999999999999988642222222122222333 334456778888876531
Q ss_pred cccCChhHHHHHHHHHhcCCCcEEEE
Q 024647 110 MHWFDLPQFYNQVKWVLKKPNGVIAT 135 (265)
Q Consensus 110 ~~~~~~~~~l~~~~~~Lk~pgG~l~~ 135 (265)
...++....+..+||+.||.++.
T Consensus 272 ---PSse~~W~~A~k~Lk~eggsilH 294 (351)
T KOG1227|consen 272 ---PSSEQGWPTAIKALKPEGGSILH 294 (351)
T ss_pred ---cccccchHHHHHHhhhcCCcEEE
Confidence 13456667778888845554554
No 293
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=95.25 E-value=0.086 Score=48.65 Aligned_cols=100 Identities=18% Similarity=0.133 Sum_probs=64.7
Q ss_pred CCCeEEEEcCCc-chhHHHHHh-cCCcEEEEcCCHHHHHHHHcCCCceEEecCC----------------ccchhhhhhc
Q 024647 33 NHELAWDVGTGS-GQAAASLSG-IFENVIGTETSPKQIEFATKLPNIRYELTSP----------------AMSIAELEQN 94 (265)
Q Consensus 33 ~~~~vlDvGcG~-G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~----------------~~~~~d~~~~ 94 (265)
++.+|+-+|||. |..+..+++ .+++|+++|.++..++.++.+. ..++..+. +......+.+
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lG-a~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~ 241 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMG-AEFLELDFKEEGGSGDGYAKVMSEEFIAAEMELF 241 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcC-CeEEeccccccccccccceeecCHHHHHHHHHHH
Confidence 468899999997 777777665 4678999999999999888642 33322211 0000011112
Q ss_pred cCCCCceeEEEeccccccC-ChhHHHHHHHHHhcCCCcEEE
Q 024647 95 VAAQSTVDLVTIAQAMHWF-DLPQFYNQVKWVLKKPNGVIA 134 (265)
Q Consensus 95 ~~~~~~~Dlv~~~~~~~~~-~~~~~l~~~~~~Lk~pgG~l~ 134 (265)
+..-..+|+|+..-.+.-- .|.-..+++.+.+| ||+.++
T Consensus 242 ~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MK-pGsvIV 281 (511)
T TIGR00561 242 AAQAKEVDIIITTALIPGKPAPKLITEEMVDSMK-AGSVIV 281 (511)
T ss_pred HHHhCCCCEEEECcccCCCCCCeeehHHHHhhCC-CCCEEE
Confidence 2123469999876554443 33347888999999 999877
No 294
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=95.22 E-value=0.032 Score=49.72 Aligned_cols=92 Identities=16% Similarity=0.115 Sum_probs=57.5
Q ss_pred eEEEEcCCcchhHHHHHhcCC-cEEEEcCCHHHHHHHHcC-------CCceEEecCCccchhhhhhccCCCCceeEEEec
Q 024647 36 LAWDVGTGSGQAAASLSGIFE-NVIGTETSPKQIEFATKL-------PNIRYELTSPAMSIAELEQNVAAQSTVDLVTIA 107 (265)
Q Consensus 36 ~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~ 107 (265)
.|||+|.|||.++.-.++.++ .|+++|.-..|.+.|++. .+++.+.... .++...+ ....|+++..
T Consensus 69 ~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrS----tev~vg~--~~RadI~v~e 142 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRS----TEVKVGG--SSRADIAVRE 142 (636)
T ss_pred EEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccceeeecccc----ceeeecC--cchhhhhhHh
Confidence 589999999999999988887 599999999999999862 4555555332 1222221 2335555543
Q ss_pred cccccC---ChhHHHHHHHHHhcCCCcEE
Q 024647 108 QAMHWF---DLPQFYNQVKWVLKKPNGVI 133 (265)
Q Consensus 108 ~~~~~~---~~~~~l~~~~~~Lk~pgG~l 133 (265)
...-.+ ..-..++++.+.|-.+|...
T Consensus 143 ~fdtEligeGalps~qhAh~~L~~~nc~~ 171 (636)
T KOG1501|consen 143 DFDTELIGEGALPSLQHAHDMLLVDNCKT 171 (636)
T ss_pred hhhhhhhccccchhHHHHHHHhcccCCee
Confidence 221111 12346677766664255443
No 295
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=95.19 E-value=0.21 Score=43.12 Aligned_cols=86 Identities=20% Similarity=0.142 Sum_probs=58.8
Q ss_pred CCCeEEEEcCCc-chhHHHHHhc-CCc-EEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEeccc
Q 024647 33 NHELAWDVGTGS-GQAAASLSGI-FEN-VIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQA 109 (265)
Q Consensus 33 ~~~~vlDvGcG~-G~~~~~l~~~-~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~ 109 (265)
+++++|-+|||. |.++..+++. +.+ |+++|.++..++.+.... ... . .+ . ....+|+|+-..
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~---~i~--~----~~--~---~~~g~Dvvid~~- 208 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYE---VLD--P----EK--D---PRRDYRAIYDAS- 208 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhcc---ccC--h----hh--c---cCCCCCEEEECC-
Confidence 456788889986 8888888765 555 778899988887776421 111 0 11 0 234689988652
Q ss_pred cccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647 110 MHWFDLPQFYNQVKWVLKKPNGVIATWCY 138 (265)
Q Consensus 110 ~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~ 138 (265)
.....++.+.+.|+ ++|++++...
T Consensus 209 ----G~~~~~~~~~~~l~-~~G~iv~~G~ 232 (308)
T TIGR01202 209 ----GDPSLIDTLVRRLA-KGGEIVLAGF 232 (308)
T ss_pred ----CCHHHHHHHHHhhh-cCcEEEEEee
Confidence 23467889999999 9999987654
No 296
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=95.18 E-value=0.02 Score=47.25 Aligned_cols=72 Identities=21% Similarity=0.169 Sum_probs=41.4
Q ss_pred CeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHc-------C--------CCceEEecCCccchhhhhhccCCCC
Q 024647 35 ELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATK-------L--------PNIRYELTSPAMSIAELEQNVAAQS 99 (265)
Q Consensus 35 ~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~-------~--------~~~~~~~~~~~~~~~d~~~~~~~~~ 99 (265)
.+|||.-||-|.-+.-++..+++|+++|-||.+....+. . ..++.+.++. .+.+..+++
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~------~~~L~~~~~ 150 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASLGCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDA------LEYLRQPDN 150 (234)
T ss_dssp --EEETT-TTSHHHHHHHHHT--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-C------CCHCCCHSS
T ss_pred CEEEECCCcchHHHHHHHccCCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCH------HHHHhhcCC
Confidence 489999999999999999889999999999988665432 1 1345555332 122335678
Q ss_pred ceeEEEecccccc
Q 024647 100 TVDLVTIAQAMHW 112 (265)
Q Consensus 100 ~~Dlv~~~~~~~~ 112 (265)
+||+|+..-.+..
T Consensus 151 s~DVVY~DPMFp~ 163 (234)
T PF04445_consen 151 SFDVVYFDPMFPE 163 (234)
T ss_dssp --SEEEE--S---
T ss_pred CCCEEEECCCCCC
Confidence 9999999776654
No 297
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=95.16 E-value=0.27 Score=41.73 Aligned_cols=97 Identities=15% Similarity=0.068 Sum_probs=62.5
Q ss_pred CCCeEEEEcCCc-chhHHHHHhc-CCc-EEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEeccc
Q 024647 33 NHELAWDVGTGS-GQAAASLSGI-FEN-VIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQA 109 (265)
Q Consensus 33 ~~~~vlDvGcG~-G~~~~~l~~~-~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~ 109 (265)
++++||-+|+|+ |..+..+++. +.+ |+++|.++.-++.++++......... . ....+..+ .....+|+|+-..
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~-~-~~~~~~~~-~~~~g~d~vid~~- 195 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGATALAEPE-V-LAERQGGL-QNGRGVDVALEFS- 195 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCcEecCch-h-hHHHHHHH-hCCCCCCEEEECC-
Confidence 567889899875 7777777765 455 99999999988888875321111110 0 00112222 1234689988642
Q ss_pred cccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647 110 MHWFDLPQFYNQVKWVLKKPNGVIATWCY 138 (265)
Q Consensus 110 ~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~ 138 (265)
.....++.+.+.|+ ++|++++...
T Consensus 196 ----G~~~~~~~~~~~l~-~~G~iv~~G~ 219 (280)
T TIGR03366 196 ----GATAAVRACLESLD-VGGTAVLAGS 219 (280)
T ss_pred ----CChHHHHHHHHHhc-CCCEEEEecc
Confidence 23467888999999 9999987653
No 298
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=95.10 E-value=0.086 Score=42.84 Aligned_cols=106 Identities=12% Similarity=0.012 Sum_probs=64.6
Q ss_pred HHHHHHhhCCCCCeEEEEcCCcchhHHHHHhcCC--cEEEEcCCHHHHHHHHcC----CCceEEecCCccchhhh-hhcc
Q 024647 23 LFKFITSKTTNHELAWDVGTGSGQAAASLSGIFE--NVIGTETSPKQIEFATKL----PNIRYELTSPAMSIAEL-EQNV 95 (265)
Q Consensus 23 l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~----~~~~~~~~~~~~~~~d~-~~~~ 95 (265)
-+..+.+..+.+.++.||||--+.++..|.+... .++++|++++.++.|.+. ...+++.... +|. ..+
T Consensus 6 RL~~va~~V~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~----~dgl~~l- 80 (226)
T COG2384 6 RLTTVANLVKQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRL----GDGLAVL- 80 (226)
T ss_pred HHHHHHHHHHcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEec----cCCcccc-
Confidence 3445556666666699999999999999998764 699999999999988752 2233333222 332 222
Q ss_pred CCCCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEE
Q 024647 96 AAQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIAT 135 (265)
Q Consensus 96 ~~~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~ 135 (265)
.++..+|.|+.+..--. -....+.+-.+-|+ .--.+++
T Consensus 81 ~~~d~~d~ivIAGMGG~-lI~~ILee~~~~l~-~~~rlIL 118 (226)
T COG2384 81 ELEDEIDVIVIAGMGGT-LIREILEEGKEKLK-GVERLIL 118 (226)
T ss_pred CccCCcCEEEEeCCcHH-HHHHHHHHhhhhhc-CcceEEE
Confidence 23447888886542110 11245555555555 2234444
No 299
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=95.03 E-value=0.37 Score=42.16 Aligned_cols=99 Identities=13% Similarity=0.115 Sum_probs=61.5
Q ss_pred CCCCeEEEEcCCc-chhHHHHHhc-CCc-EEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCcee-EEEec
Q 024647 32 TNHELAWDVGTGS-GQAAASLSGI-FEN-VIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVD-LVTIA 107 (265)
Q Consensus 32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D-lv~~~ 107 (265)
.++++||-.|||+ |..+..+++. +.+ |++++.++.-++.+++..-.......... ...+... .....+| +|+-.
T Consensus 159 ~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~~~-~~~~~~~-~~~~~~d~~v~d~ 236 (347)
T PRK10309 159 CEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSLGAMQTFNSREMS-APQIQSV-LRELRFDQLILET 236 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCceEecCcccC-HHHHHHH-hcCCCCCeEEEEC
Confidence 4567888889876 7777777764 455 78999999988888764321222211100 0112222 2334577 55532
Q ss_pred cccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647 108 QAMHWFDLPQFYNQVKWVLKKPNGVIATWCY 138 (265)
Q Consensus 108 ~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~ 138 (265)
..-...+.++.+.|+ +||.+++...
T Consensus 237 -----~G~~~~~~~~~~~l~-~~G~iv~~G~ 261 (347)
T PRK10309 237 -----AGVPQTVELAIEIAG-PRAQLALVGT 261 (347)
T ss_pred -----CCCHHHHHHHHHHhh-cCCEEEEEcc
Confidence 222468899999999 9999987654
No 300
>PTZ00357 methyltransferase; Provisional
Probab=94.72 E-value=0.065 Score=50.52 Aligned_cols=96 Identities=15% Similarity=0.134 Sum_probs=57.0
Q ss_pred eEEEEcCCcchhHHHHHhcC------CcEEEEcCCHHHHHHHH-cCCC-ceEE------ecCCccchhhhhhccCCC---
Q 024647 36 LAWDVGTGSGQAAASLSGIF------ENVIGTETSPKQIEFAT-KLPN-IRYE------LTSPAMSIAELEQNVAAQ--- 98 (265)
Q Consensus 36 ~vlDvGcG~G~~~~~l~~~~------~~v~~vD~s~~~~~~a~-~~~~-~~~~------~~~~~~~~~d~~~~~~~~--- 98 (265)
.|+-+|+|-|-+.....+.. -+|++||.++..+.... ++.+ -.+. ...++++..|+..+..+.
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~ 782 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG 782 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence 58999999997777655432 26999999966433222 1111 1121 122455557877774321
Q ss_pred --------CceeEEEeccccccCC---hhHHHHHHHHHhcCC----CcE
Q 024647 99 --------STVDLVTIAQAMHWFD---LPQFYNQVKWVLKKP----NGV 132 (265)
Q Consensus 99 --------~~~Dlv~~~~~~~~~~---~~~~l~~~~~~Lk~p----gG~ 132 (265)
+.+|+|++-..--.=| -+..|.-+.+.|| + +|+
T Consensus 783 s~~~P~~~gKaDIVVSELLGSFGDNELSPECLDGaQrfLK-diqhsdGI 830 (1072)
T PTZ00357 783 SLTLPADFGLCDLIVSELLGSLGDNELSPECLEAFHAQLE-DIQLSRGI 830 (1072)
T ss_pred cccccccccccceehHhhhcccccccCCHHHHHHHHHhhh-hhcccccc
Confidence 3699999844222113 2467888888887 6 675
No 301
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=94.55 E-value=0.51 Score=40.99 Aligned_cols=96 Identities=15% Similarity=0.163 Sum_probs=61.5
Q ss_pred CCCeEEEEcCCc-chhHHHHHhc-CC-cEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEeccc
Q 024647 33 NHELAWDVGTGS-GQAAASLSGI-FE-NVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQA 109 (265)
Q Consensus 33 ~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~ 109 (265)
++.+||-.|||. |..+..+++. +. ++++++.++...+.+++..--.+..... .++..+....+.+|+++....
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~g~~~vi~~~~----~~~~~~~~~~~~vd~vld~~g 240 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAMGADETVNLAR----DPLAAYAADKGDFDVVFEASG 240 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCCEEEcCCc----hhhhhhhccCCCccEEEECCC
Confidence 567888889876 7777777765 44 6999999999888776543212222111 112222222345899986422
Q ss_pred cccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647 110 MHWFDLPQFYNQVKWVLKKPNGVIATWCY 138 (265)
Q Consensus 110 ~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~ 138 (265)
....++++.+.|+ ++|+++....
T Consensus 241 -----~~~~~~~~~~~L~-~~G~~v~~g~ 263 (339)
T cd08232 241 -----APAALASALRVVR-PGGTVVQVGM 263 (339)
T ss_pred -----CHHHHHHHHHHHh-cCCEEEEEec
Confidence 2356888999999 9999987543
No 302
>PLN02740 Alcohol dehydrogenase-like
Probab=94.54 E-value=0.54 Score=41.89 Aligned_cols=99 Identities=12% Similarity=0.092 Sum_probs=63.4
Q ss_pred CCCCeEEEEcCCc-chhHHHHHhc-CC-cEEEEcCCHHHHHHHHcCCCceEEecCCc--cchhhhhhccCCCCceeEEEe
Q 024647 32 TNHELAWDVGTGS-GQAAASLSGI-FE-NVIGTETSPKQIEFATKLPNIRYELTSPA--MSIAELEQNVAAQSTVDLVTI 106 (265)
Q Consensus 32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~--~~~~d~~~~~~~~~~~Dlv~~ 106 (265)
.++++||-+|||. |..+..+++. +. +|+++|.++..++.++++.--.++..... .....+..+. . +.+|+|+-
T Consensus 197 ~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~-~-~g~dvvid 274 (381)
T PLN02740 197 QAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEMGITDFINPKDSDKPVHERIREMT-G-GGVDYSFE 274 (381)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHcCCcEEEecccccchHHHHHHHHh-C-CCCCEEEE
Confidence 5678899999986 7777777765 45 59999999999999887532222221100 0001122221 2 26999986
Q ss_pred ccccccCChhHHHHHHHHHhcCCC-cEEEEEec
Q 024647 107 AQAMHWFDLPQFYNQVKWVLKKPN-GVIATWCY 138 (265)
Q Consensus 107 ~~~~~~~~~~~~l~~~~~~Lk~pg-G~l~~~~~ 138 (265)
.. .....+..+.+.++ +| |++++...
T Consensus 275 ~~-----G~~~~~~~a~~~~~-~g~G~~v~~G~ 301 (381)
T PLN02740 275 CA-----GNVEVLREAFLSTH-DGWGLTVLLGI 301 (381)
T ss_pred CC-----CChHHHHHHHHhhh-cCCCEEEEEcc
Confidence 42 23467888888998 76 98877554
No 303
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=94.43 E-value=0.52 Score=42.53 Aligned_cols=90 Identities=16% Similarity=0.047 Sum_probs=61.2
Q ss_pred CCCCeEEEEcCCc-chhHHHHHh-cCCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEeccc
Q 024647 32 TNHELAWDVGTGS-GQAAASLSG-IFENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQA 109 (265)
Q Consensus 32 ~~~~~vlDvGcG~-G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~ 109 (265)
.++++|+-+|||+ |......++ .+++|+.+|+++..++.|+.. +..... .++. . ..+|+|+...
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~-G~~~~~---------~~e~-v--~~aDVVI~at- 265 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAME-GYEVMT---------MEEA-V--KEGDIFVTTT- 265 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhc-CCEEcc---------HHHH-H--cCCCEEEECC-
Confidence 3678999999998 766665554 467999999999988888763 332221 1111 1 2479998753
Q ss_pred cccCChhHHHHH-HHHHhcCCCcEEEEEecCC
Q 024647 110 MHWFDLPQFYNQ-VKWVLKKPNGVIATWCYTV 140 (265)
Q Consensus 110 ~~~~~~~~~l~~-~~~~Lk~pgG~l~~~~~~~ 140 (265)
.....+.. ..+.+| +||+++.....+
T Consensus 266 ----G~~~~i~~~~l~~mk-~GgilvnvG~~~ 292 (413)
T cd00401 266 ----GNKDIITGEHFEQMK-DGAIVCNIGHFD 292 (413)
T ss_pred ----CCHHHHHHHHHhcCC-CCcEEEEeCCCC
Confidence 23445655 489999 999998766543
No 304
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=94.38 E-value=0.39 Score=42.08 Aligned_cols=123 Identities=16% Similarity=0.217 Sum_probs=71.9
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcCC------cEEEEcCCHHHHHHHHc----CC--CceEEecCCccchhhh-hhc-cCC
Q 024647 32 TNHELAWDVGTGSGQAAASLSGIFE------NVIGTETSPKQIEFATK----LP--NIRYELTSPAMSIAEL-EQN-VAA 97 (265)
Q Consensus 32 ~~~~~vlDvGcG~G~~~~~l~~~~~------~v~~vD~s~~~~~~a~~----~~--~~~~~~~~~~~~~~d~-~~~-~~~ 97 (265)
.++.+|||+.+-+|.-|..|.+... .|++=|.++.-+..... .+ ++......+....... .+. +..
T Consensus 154 ~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~~~~ 233 (375)
T KOG2198|consen 154 KPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDGNDKE 233 (375)
T ss_pred CCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccccCchhh
Confidence 5788999999999999999887643 58999999987765442 22 2222221110000000 011 123
Q ss_pred CCceeEEEecc-----ccc----------cC-C--------hhHHHHHHHHHhcCCCcEEEEEecCCCCC-C-hHHHHhh
Q 024647 98 QSTVDLVTIAQ-----AMH----------WF-D--------LPQFYNQVKWVLKKPNGVIATWCYTVPEV-N-VSVDAVF 151 (265)
Q Consensus 98 ~~~~Dlv~~~~-----~~~----------~~-~--------~~~~l~~~~~~Lk~pgG~l~~~~~~~~~~-~-~~~~~~~ 151 (265)
...||-|+|.- ..+ |. . .-..+.+..++|| +||+++.++...... + .-+.+++
T Consensus 234 ~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk-~GG~lVYSTCSLnpieNEaVV~~~L 312 (375)
T KOG2198|consen 234 QLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLK-VGGRLVYSTCSLNPIENEAVVQEAL 312 (375)
T ss_pred hhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhc-CCCEEEEeccCCCchhhHHHHHHHH
Confidence 34578777632 111 21 0 1257888999999 999999988763332 2 3334444
Q ss_pred cccc
Q 024647 152 QPFY 155 (265)
Q Consensus 152 ~~~~ 155 (265)
+...
T Consensus 313 ~~~~ 316 (375)
T KOG2198|consen 313 QKVG 316 (375)
T ss_pred HHhc
Confidence 4443
No 305
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=94.27 E-value=0.025 Score=47.66 Aligned_cols=48 Identities=8% Similarity=0.100 Sum_probs=36.6
Q ss_pred HHHHHHHhh-----CCCCCeEEEEcCCcchhHHHHHhcC-CcEEEEcCCHHHHH
Q 024647 22 ELFKFITSK-----TTNHELAWDVGTGSGQAAASLSGIF-ENVIGTETSPKQIE 69 (265)
Q Consensus 22 ~l~~~l~~~-----~~~~~~vlDvGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~ 69 (265)
.++..+.+. ...+++|||+|||+|.-.......+ ..+...|.|...++
T Consensus 100 dl~~~l~~e~~~~~~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~ 153 (282)
T KOG2920|consen 100 DLLPYLKEEIGAQMSFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLR 153 (282)
T ss_pred HHHHHHHHHhhhheEecCceeEecCCcccccchhhhhhccceeeeEecchhhee
Confidence 455555533 1356889999999999999888777 57888899888774
No 306
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=94.26 E-value=0.025 Score=40.70 Aligned_cols=35 Identities=20% Similarity=0.612 Sum_probs=28.3
Q ss_pred ceeEEEeccccccCC-------hhHHHHHHHHHhcCCCcEEEE
Q 024647 100 TVDLVTIAQAMHWFD-------LPQFYNQVKWVLKKPNGVIAT 135 (265)
Q Consensus 100 ~~Dlv~~~~~~~~~~-------~~~~l~~~~~~Lk~pgG~l~~ 135 (265)
.||+|+|....-|+. ...+++.+++.|+ |||.|++
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~-pGG~lil 42 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLR-PGGILIL 42 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEE-EEEEEEE
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhC-CCCEEEE
Confidence 489999998777763 2369999999999 9999998
No 307
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=94.24 E-value=0.57 Score=40.84 Aligned_cols=90 Identities=12% Similarity=-0.028 Sum_probs=59.8
Q ss_pred CCCCeEEEEcCCc-chhHHHHHhc-CCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEeccc
Q 024647 32 TNHELAWDVGTGS-GQAAASLSGI-FENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQA 109 (265)
Q Consensus 32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~ 109 (265)
.++.+||-.|||. |..+..+++. +.+|++++.++.-++.++++..-.... . .+. ..+.+|+++....
T Consensus 164 ~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga~~vi~--~-------~~~--~~~~~d~~i~~~~ 232 (329)
T TIGR02822 164 PPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALALGAASAGG--A-------YDT--PPEPLDAAILFAP 232 (329)
T ss_pred CCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCCceecc--c-------ccc--CcccceEEEECCC
Confidence 5678899999864 6666666654 568999999999899888753211111 0 001 1235787664322
Q ss_pred cccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647 110 MHWFDLPQFYNQVKWVLKKPNGVIATWCY 138 (265)
Q Consensus 110 ~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~ 138 (265)
....+....+.|+ +||++++...
T Consensus 233 -----~~~~~~~~~~~l~-~~G~~v~~G~ 255 (329)
T TIGR02822 233 -----AGGLVPPALEALD-RGGVLAVAGI 255 (329)
T ss_pred -----cHHHHHHHHHhhC-CCcEEEEEec
Confidence 1357889999999 9999987654
No 308
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=94.12 E-value=0.78 Score=40.16 Aligned_cols=100 Identities=21% Similarity=0.219 Sum_probs=62.4
Q ss_pred CCCCeEEEEcCCc-chhHHHHHhc-CC-cEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEecc
Q 024647 32 TNHELAWDVGTGS-GQAAASLSGI-FE-NVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQ 108 (265)
Q Consensus 32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~ 108 (265)
+++.+||-.|+|. |..+..+++. +. .++++|.+++..+.+++..-..............+..+ .....+|+++..
T Consensus 165 ~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~i~~~-~~~~~~d~vld~- 242 (351)
T cd08285 165 KLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEYGATDIVDYKNGDVVEQILKL-TGGKGVDAVIIA- 242 (351)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCceEecCCCCCHHHHHHHH-hCCCCCcEEEEC-
Confidence 4567888888874 6677777765 44 48999999988888876432122221110000112222 234569999854
Q ss_pred ccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647 109 AMHWFDLPQFYNQVKWVLKKPNGVIATWCY 138 (265)
Q Consensus 109 ~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~ 138 (265)
......+.++.+.|+ ++|+++....
T Consensus 243 ----~g~~~~~~~~~~~l~-~~G~~v~~g~ 267 (351)
T cd08285 243 ----GGGQDTFEQALKVLK-PGGTISNVNY 267 (351)
T ss_pred ----CCCHHHHHHHHHHhh-cCCEEEEecc
Confidence 222467899999999 9999886543
No 309
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.12 E-value=0.39 Score=36.61 Aligned_cols=41 Identities=17% Similarity=0.299 Sum_probs=35.8
Q ss_pred CCCeEEEEcCCcchhHHHHHhcC-CcEEEEcCCHHHHHHHHc
Q 024647 33 NHELAWDVGTGSGQAAASLSGIF-ENVIGTETSPKQIEFATK 73 (265)
Q Consensus 33 ~~~~vlDvGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~ 73 (265)
+..+.+|+|.|.|....+.++.+ ..-+|+|++|-.+..++-
T Consensus 72 ~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl 113 (199)
T KOG4058|consen 72 PKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRL 113 (199)
T ss_pred CCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHH
Confidence 44678999999999999999988 468999999999988763
No 310
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=94.05 E-value=0.11 Score=46.88 Aligned_cols=114 Identities=11% Similarity=-0.023 Sum_probs=66.9
Q ss_pred CCCeEEEEcCCcchhHHHHHhc----CCcEEEEcCCHHHHHHHHcC--C----CceEEecCCccchhhhhhccCC-CCce
Q 024647 33 NHELAWDVGTGSGQAAASLSGI----FENVIGTETSPKQIEFATKL--P----NIRYELTSPAMSIAELEQNVAA-QSTV 101 (265)
Q Consensus 33 ~~~~vlDvGcG~G~~~~~l~~~----~~~v~~vD~s~~~~~~a~~~--~----~~~~~~~~~~~~~~d~~~~~~~-~~~~ 101 (265)
.++.+.|+|.|.|.-...+... ...+..||.|..|....... . +-.++.. ..+. + ..+|.+ ...|
T Consensus 200 ~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~-~~~~--r-~~~pi~~~~~y 275 (491)
T KOG2539|consen 200 RPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRK-LVFH--R-QRLPIDIKNGY 275 (491)
T ss_pred ChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccc-cchh--c-ccCCCCcccce
Confidence 3567889998877655554432 24599999999999877641 1 0011110 0000 0 223333 3459
Q ss_pred eEEEeccccccC-Chh---H-HHHHHHHHhcCCCcEEEEEecCCCCCChHHHHhh
Q 024647 102 DLVTIAQAMHWF-DLP---Q-FYNQVKWVLKKPNGVIATWCYTVPEVNVSVDAVF 151 (265)
Q Consensus 102 Dlv~~~~~~~~~-~~~---~-~l~~~~~~Lk~pgG~l~~~~~~~~~~~~~~~~~~ 151 (265)
|+|++++.+|.+ ... . .-..+.+..+ +|+.+++...+.+.-...+.++.
T Consensus 276 Dlvi~ah~l~~~~s~~~R~~v~~s~~r~~~r-~g~~lViIe~g~~~g~e~l~eaR 329 (491)
T KOG2539|consen 276 DLVICAHKLHELGSKFSRLDVPESLWRKTDR-SGYFLVIIEKGTTMGLELLTEAR 329 (491)
T ss_pred eeEEeeeeeeccCCchhhhhhhHHHHHhccC-CCceEEEEecCCccchhhHHHHH
Confidence 999999999987 433 2 2334566678 89998876665443334444333
No 311
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=94.00 E-value=0.79 Score=39.89 Aligned_cols=99 Identities=17% Similarity=0.254 Sum_probs=60.7
Q ss_pred CCCCeEEEEcCCc-chhHHHHHhcCC--cEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEecc
Q 024647 32 TNHELAWDVGTGS-GQAAASLSGIFE--NVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQ 108 (265)
Q Consensus 32 ~~~~~vlDvGcG~-G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~ 108 (265)
+++.+||..|+|. |..+..+++... .+++++.++...+.+++.....+....-......+... .+.+.+|+++...
T Consensus 166 ~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~i~~~-~~~~~~d~vld~~ 244 (347)
T cd05278 166 KPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEAGATDIINPKNGDIVEQILEL-TGGRGVDCVIEAV 244 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhCCcEEEcCCcchHHHHHHHH-cCCCCCcEEEEcc
Confidence 4567788888763 777777776543 68899888888877765432222221110000112222 2345799998642
Q ss_pred ccccCChhHHHHHHHHHhcCCCcEEEEEe
Q 024647 109 AMHWFDLPQFYNQVKWVLKKPNGVIATWC 137 (265)
Q Consensus 109 ~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~ 137 (265)
.....+.++.+.|+ ++|+++...
T Consensus 245 -----g~~~~~~~~~~~l~-~~G~~v~~g 267 (347)
T cd05278 245 -----GFEETFEQAVKVVR-PGGTIANVG 267 (347)
T ss_pred -----CCHHHHHHHHHHhh-cCCEEEEEc
Confidence 22358889999999 999988654
No 312
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=93.92 E-value=0.32 Score=44.96 Aligned_cols=116 Identities=19% Similarity=0.266 Sum_probs=73.3
Q ss_pred cHHHHHHHHhhCC--CCCeEEEEcCCcchhHHHHHhcC------CcEEEEcCCHHHHHHHHc---CCCceEEecCCccch
Q 024647 20 PEELFKFITSKTT--NHELAWDVGTGSGQAAASLSGIF------ENVIGTETSPKQIEFATK---LPNIRYELTSPAMSI 88 (265)
Q Consensus 20 ~~~l~~~l~~~~~--~~~~vlDvGcG~G~~~~~l~~~~------~~v~~vD~s~~~~~~a~~---~~~~~~~~~~~~~~~ 88 (265)
|.++.+.+..... +..+|.|-.||+|.+.....+.. ..+.|.|+++.....++- +-++.. +..+..
T Consensus 171 P~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~---~~~i~~ 247 (489)
T COG0286 171 PREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEG---DANIRH 247 (489)
T ss_pred hHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCc---cccccc
Confidence 5566666655543 55689999999997777665432 348999999999998874 123322 111111
Q ss_pred hhh-hhc----cCCCCceeEEEeccccc---cC-C---------------------h-hHHHHHHHHHhcCCCcEEEEEe
Q 024647 89 AEL-EQN----VAAQSTVDLVTIAQAMH---WF-D---------------------L-PQFYNQVKWVLKKPNGVIATWC 137 (265)
Q Consensus 89 ~d~-~~~----~~~~~~~Dlv~~~~~~~---~~-~---------------------~-~~~l~~~~~~Lk~pgG~l~~~~ 137 (265)
+|- ... ....+.||.|+++..+. |- + . ..+++.+...|+ |||+.+++.
T Consensus 248 ~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~-~~g~aaivl 326 (489)
T COG0286 248 GDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLK-PGGRAAIVL 326 (489)
T ss_pred cccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcC-CCceEEEEe
Confidence 221 111 11336799999876442 32 1 0 368999999999 999777766
Q ss_pred cC
Q 024647 138 YT 139 (265)
Q Consensus 138 ~~ 139 (265)
+.
T Consensus 327 ~~ 328 (489)
T COG0286 327 PD 328 (489)
T ss_pred cC
Confidence 64
No 313
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=93.91 E-value=0.85 Score=39.99 Aligned_cols=99 Identities=14% Similarity=0.156 Sum_probs=61.1
Q ss_pred CCCCeEEEEcCCc-chhHHHHHhc-CCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhh----hhccCCCCcee---
Q 024647 32 TNHELAWDVGTGS-GQAAASLSGI-FENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAEL----EQNVAAQSTVD--- 102 (265)
Q Consensus 32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~----~~~~~~~~~~D--- 102 (265)
.++.+||-.|||+ |..+..+++. +.+|+++|.++..++.++++. +.......+....++ .++ .....+|
T Consensus 165 ~~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~~G-a~~~i~~~~~~~~~~~~~~~~~-t~~~g~d~~~ 242 (349)
T TIGR03201 165 KKGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKGFG-ADLTLNPKDKSAREVKKLIKAF-AKARGLRSTG 242 (349)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhC-CceEecCccccHHHHHHHHHhh-cccCCCCCCc
Confidence 4678899999976 7777777765 568999999999999887643 222111110000111 112 1222354
Q ss_pred -EEEeccccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647 103 -LVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCY 138 (265)
Q Consensus 103 -lv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~ 138 (265)
+|+-. ......++.+.++|+ +||++++...
T Consensus 243 d~v~d~-----~g~~~~~~~~~~~l~-~~G~iv~~G~ 273 (349)
T TIGR03201 243 WKIFEC-----SGSKPGQESALSLLS-HGGTLVVVGY 273 (349)
T ss_pred CEEEEC-----CCChHHHHHHHHHHh-cCCeEEEECc
Confidence 55532 223467888899999 9999987654
No 314
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=93.84 E-value=1.8 Score=36.10 Aligned_cols=114 Identities=13% Similarity=0.193 Sum_probs=70.9
Q ss_pred CCeEEEEcCCcchhHHHHHhcCC------cEEEEcCCHHHHHHH-H----cCCCceEEecCCccchhhhhhc-c-CCCCc
Q 024647 34 HELAWDVGTGSGQAAASLSGIFE------NVIGTETSPKQIEFA-T----KLPNIRYELTSPAMSIAELEQN-V-AAQST 100 (265)
Q Consensus 34 ~~~vlDvGcG~G~~~~~l~~~~~------~v~~vD~s~~~~~~a-~----~~~~~~~~~~~~~~~~~d~~~~-~-~~~~~ 100 (265)
+...+|+|+|+-.-|+.|.+.++ +++.+|+|...++.. + +++.+.....- +|.+.. . ++..+
T Consensus 79 ~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~-----~~~~~~La~~~~~~ 153 (321)
T COG4301 79 ACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALC-----GDYELALAELPRGG 153 (321)
T ss_pred cceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehh-----hhHHHHHhcccCCC
Confidence 56789999999999988876543 599999999998743 2 35665554321 443321 1 12222
Q ss_pred eeE-EEeccccccCCh---hHHHHHHHHHhcCCCcEEEE-EecCCCCCChHHHHhhcccc
Q 024647 101 VDL-VTIAQAMHWFDL---PQFYNQVKWVLKKPNGVIAT-WCYTVPEVNVSVDAVFQPFY 155 (265)
Q Consensus 101 ~Dl-v~~~~~~~~~~~---~~~l~~~~~~Lk~pgG~l~~-~~~~~~~~~~~~~~~~~~~~ 155 (265)
--+ ++...++-.+.| ..++.++..+|+ ||-.+.+ .+...+ ...++.+|.+-.
T Consensus 154 ~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~-pGd~~LlGvDl~k~--Ae~Le~AYdDp~ 210 (321)
T COG4301 154 RRLFVFLGSTLGNLTPGECAVFLTQLRGALR-PGDYFLLGVDLRKP--AERLEAAYDDPQ 210 (321)
T ss_pred eEEEEEecccccCCChHHHHHHHHHHHhcCC-CcceEEEeccccCH--HHHHHHhhcCcc
Confidence 233 334446666643 468999999999 9988776 333322 244555555433
No 315
>PLN02827 Alcohol dehydrogenase-like
Probab=93.73 E-value=0.83 Score=40.67 Aligned_cols=100 Identities=12% Similarity=0.074 Sum_probs=62.2
Q ss_pred CCCCCeEEEEcCCc-chhHHHHHhc-CC-cEEEEcCCHHHHHHHHcCCCceEEecCC--ccchhhhhhccCCCCceeEEE
Q 024647 31 TTNHELAWDVGTGS-GQAAASLSGI-FE-NVIGTETSPKQIEFATKLPNIRYELTSP--AMSIAELEQNVAAQSTVDLVT 105 (265)
Q Consensus 31 ~~~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~--~~~~~d~~~~~~~~~~~Dlv~ 105 (265)
..++++||-.|+|+ |.++..+++. +. .|+++|.++...+.++++.--.++...- ......+..+. . +.+|+|+
T Consensus 191 ~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~lGa~~~i~~~~~~~~~~~~v~~~~-~-~g~d~vi 268 (378)
T PLN02827 191 VSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTFGVTDFINPNDLSEPIQQVIKRMT-G-GGADYSF 268 (378)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCcEEEcccccchHHHHHHHHHh-C-CCCCEEE
Confidence 35678899999876 7777777764 44 4889999999988887653212221110 00001122221 2 2689988
Q ss_pred eccccccCChhHHHHHHHHHhcCCC-cEEEEEec
Q 024647 106 IAQAMHWFDLPQFYNQVKWVLKKPN-GVIATWCY 138 (265)
Q Consensus 106 ~~~~~~~~~~~~~l~~~~~~Lk~pg-G~l~~~~~ 138 (265)
-.. .....+..+.++|+ +| |++++...
T Consensus 269 d~~-----G~~~~~~~~l~~l~-~g~G~iv~~G~ 296 (378)
T PLN02827 269 ECV-----GDTGIATTALQSCS-DGWGLTVTLGV 296 (378)
T ss_pred ECC-----CChHHHHHHHHhhc-cCCCEEEEECC
Confidence 642 23457888899999 88 99987543
No 316
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=93.65 E-value=1.1 Score=38.97 Aligned_cols=101 Identities=18% Similarity=0.144 Sum_probs=63.5
Q ss_pred CCCCCeEEEEcCCc-chhHHHHHhc-CCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEecc
Q 024647 31 TTNHELAWDVGTGS-GQAAASLSGI-FENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQ 108 (265)
Q Consensus 31 ~~~~~~vlDvGcG~-G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~ 108 (265)
..++.+||-.|+|. |..+..+++. +.+++++..+++..+.++++.........-......+... .+...+|+++...
T Consensus 157 l~~g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s~~~~~~~~~~g~~~v~~~~~~~~~~~l~~~-~~~~~vd~vld~~ 235 (337)
T cd08261 157 VTAGDTVLVVGAGPIGLGVIQVAKARGARVIVVDIDDERLEFARELGADDTINVGDEDVAARLREL-TDGEGADVVIDAT 235 (337)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHhCCCEEecCcccCHHHHHHHH-hCCCCCCEEEECC
Confidence 35667888888874 6777777765 5689999889988887765432222221110011222222 2445689998642
Q ss_pred ccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647 109 AMHWFDLPQFYNQVKWVLKKPNGVIATWCY 138 (265)
Q Consensus 109 ~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~ 138 (265)
.....+.++.+.|+ ++|.++....
T Consensus 236 -----g~~~~~~~~~~~l~-~~G~~i~~g~ 259 (337)
T cd08261 236 -----GNPASMEEAVELVA-HGGRVVLVGL 259 (337)
T ss_pred -----CCHHHHHHHHHHHh-cCCEEEEEcC
Confidence 12457888999999 9999886543
No 317
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=93.61 E-value=1.3 Score=38.96 Aligned_cols=98 Identities=16% Similarity=0.119 Sum_probs=62.5
Q ss_pred CCCCeEEEEcC-C-cchhHHHHHhc-CCcEEEEcCCHHHHHHHH-cCCCceEEecCCc-cchhhhhhccCCCCceeEEEe
Q 024647 32 TNHELAWDVGT-G-SGQAAASLSGI-FENVIGTETSPKQIEFAT-KLPNIRYELTSPA-MSIAELEQNVAAQSTVDLVTI 106 (265)
Q Consensus 32 ~~~~~vlDvGc-G-~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~-~~~~~~~~~~~~~-~~~~d~~~~~~~~~~~Dlv~~ 106 (265)
.++++||-.|+ | .|.++..+++. +.+|++++.++...+.++ ++.--..+...-. .....+... ..+.+|+|+-
T Consensus 157 ~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~lGa~~vi~~~~~~~~~~~i~~~--~~~gvD~v~d 234 (348)
T PLN03154 157 KKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNKLGFDEAFNYKEEPDLDAALKRY--FPEGIDIYFD 234 (348)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhcCCCEEEECCCcccHHHHHHHH--CCCCcEEEEE
Confidence 56788999998 4 47888888765 568999999998888776 3322122221100 011112222 1246899986
Q ss_pred ccccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647 107 AQAMHWFDLPQFYNQVKWVLKKPNGVIATWCY 138 (265)
Q Consensus 107 ~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~ 138 (265)
... ...+..+.+.|+ ++|++++...
T Consensus 235 ~vG------~~~~~~~~~~l~-~~G~iv~~G~ 259 (348)
T PLN03154 235 NVG------GDMLDAALLNMK-IHGRIAVCGM 259 (348)
T ss_pred CCC------HHHHHHHHHHhc-cCCEEEEECc
Confidence 422 247888999999 9999987553
No 318
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=93.57 E-value=1 Score=40.42 Aligned_cols=104 Identities=19% Similarity=0.117 Sum_probs=64.0
Q ss_pred CCCCeEEEEcCCc-chhHHHHHhc-CCc-EEEEcCCHHHHHHHHcCCCceEEecCC-ccchhhhhhccCCCCceeEEEec
Q 024647 32 TNHELAWDVGTGS-GQAAASLSGI-FEN-VIGTETSPKQIEFATKLPNIRYELTSP-AMSIAELEQNVAAQSTVDLVTIA 107 (265)
Q Consensus 32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~-~~~~~d~~~~~~~~~~~Dlv~~~ 107 (265)
.++++||-.|+|+ |..+..+++. +.+ ++.+|.++.-++.++++. +....... ......+..+ .....+|+++-.
T Consensus 184 ~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~G-a~~v~~~~~~~~~~~v~~~-~~~~g~Dvvid~ 261 (393)
T TIGR02819 184 GPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSFG-CETVDLSKDATLPEQIEQI-LGEPEVDCAVDC 261 (393)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHcC-CeEEecCCcccHHHHHHHH-cCCCCCcEEEEC
Confidence 4567777788876 7777777765 445 667799998888888753 33222110 0001122222 233468999865
Q ss_pred ccccc---------CChhHHHHHHHHHhcCCCcEEEEEec
Q 024647 108 QAMHW---------FDLPQFYNQVKWVLKKPNGVIATWCY 138 (265)
Q Consensus 108 ~~~~~---------~~~~~~l~~~~~~Lk~pgG~l~~~~~ 138 (265)
..-.. .+....++++.++++ +||++++...
T Consensus 262 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~G~i~~~G~ 300 (393)
T TIGR02819 262 VGFEARGHGHDGKKEAPATVLNSLMEVTR-VGGAIGIPGL 300 (393)
T ss_pred CCCccccccccccccchHHHHHHHHHHhh-CCCEEEEeee
Confidence 43211 022358999999999 9999988655
No 319
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=93.40 E-value=0.91 Score=40.10 Aligned_cols=95 Identities=17% Similarity=0.134 Sum_probs=57.7
Q ss_pred CCCCeEEEEcCCc-chhHHHHHhc-CCcEEEEcCCHHHHH-HHHcCCCceEEecCCccchhhhhhccCCCCceeEEEecc
Q 024647 32 TNHELAWDVGTGS-GQAAASLSGI-FENVIGTETSPKQIE-FATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQ 108 (265)
Q Consensus 32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~~v~~vD~s~~~~~-~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~ 108 (265)
.++++||-.|||. |.++..+++. +.++++++.++.... .++++ ++......-. ..++.... +.+|+|+-..
T Consensus 182 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~-Ga~~vi~~~~--~~~~~~~~---~~~D~vid~~ 255 (360)
T PLN02586 182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINRL-GADSFLVSTD--PEKMKAAI---GTMDYIIDTV 255 (360)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHhC-CCcEEEcCCC--HHHHHhhc---CCCCEEEECC
Confidence 4567888899986 7777777765 567888887766543 33443 2222211100 01222221 2488888542
Q ss_pred ccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647 109 AMHWFDLPQFYNQVKWVLKKPNGVIATWCY 138 (265)
Q Consensus 109 ~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~ 138 (265)
. ....+.++.+.|+ +||+++....
T Consensus 256 g-----~~~~~~~~~~~l~-~~G~iv~vG~ 279 (360)
T PLN02586 256 S-----AVHALGPLLGLLK-VNGKLITLGL 279 (360)
T ss_pred C-----CHHHHHHHHHHhc-CCcEEEEeCC
Confidence 2 2357888999999 9999987654
No 320
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=93.12 E-value=1.4 Score=39.02 Aligned_cols=99 Identities=14% Similarity=0.064 Sum_probs=62.6
Q ss_pred CCCCeEEEEcCCc-chhHHHHHhc-CC-cEEEEcCCHHHHHHHHcCCCceEEecCCc--cchhhhhhccCCCCceeEEEe
Q 024647 32 TNHELAWDVGTGS-GQAAASLSGI-FE-NVIGTETSPKQIEFATKLPNIRYELTSPA--MSIAELEQNVAAQSTVDLVTI 106 (265)
Q Consensus 32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~--~~~~d~~~~~~~~~~~Dlv~~ 106 (265)
.++++||-.|+|. |.++..+++. +. +|+++|.++..++.++++.....+...-. .....+..+ ..+.+|+|+-
T Consensus 185 ~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~v~~~--~~~g~d~vid 262 (368)
T cd08300 185 EPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKKFGATDCVNPKDHDKPIQQVLVEM--TDGGVDYTFE 262 (368)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCCEEEcccccchHHHHHHHHH--hCCCCcEEEE
Confidence 5678888889875 6777777764 55 69999999999998876532222221100 001112222 1236899986
Q ss_pred ccccccCChhHHHHHHHHHhcCCC-cEEEEEec
Q 024647 107 AQAMHWFDLPQFYNQVKWVLKKPN-GVIATWCY 138 (265)
Q Consensus 107 ~~~~~~~~~~~~l~~~~~~Lk~pg-G~l~~~~~ 138 (265)
. ......+.++.+.|+ ++ |+++....
T Consensus 263 ~-----~g~~~~~~~a~~~l~-~~~G~~v~~g~ 289 (368)
T cd08300 263 C-----IGNVKVMRAALEACH-KGWGTSVIIGV 289 (368)
T ss_pred C-----CCChHHHHHHHHhhc-cCCCeEEEEcc
Confidence 4 222457888899998 77 99887554
No 321
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=93.10 E-value=0.18 Score=47.01 Aligned_cols=112 Identities=15% Similarity=0.219 Sum_probs=67.2
Q ss_pred CCCCcHHHHHHHHhh--CCCCCeEEEEcCCcchhHHHHHhcCC---cEEEEcCCHHHHHHHHcCCCceEEecCCccchhh
Q 024647 16 RPNYPEELFKFITSK--TTNHELAWDVGTGSGQAAASLSGIFE---NVIGTETSPKQIEFATKLPNIRYELTSPAMSIAE 90 (265)
Q Consensus 16 rp~y~~~l~~~l~~~--~~~~~~vlDvGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d 90 (265)
|..| +|+++=..+ +.+...|||+||-+|...+-.++..+ -|+|||+-|- +..+|+...+.+++ .+
T Consensus 27 RsaF--KLlQln~ky~fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pi-----kp~~~c~t~v~dIt---td 96 (780)
T KOG1098|consen 27 RSAF--KLLQLNKKYKFLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPI-----KPIPNCDTLVEDIT---TD 96 (780)
T ss_pred HHHH--HHHHHHHHhccccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeec-----ccCCccchhhhhhh---HH
Confidence 4444 555554444 35677899999999999988887654 4999999775 33345444332221 11
Q ss_pred -----hhhccCCCCceeEEEecc----ccccC-Chh-------HHHHHHHHHhcCCCcEEEEEecC
Q 024647 91 -----LEQNVAAQSTVDLVTIAQ----AMHWF-DLP-------QFYNQVKWVLKKPNGVIATWCYT 139 (265)
Q Consensus 91 -----~~~~~~~~~~~Dlv~~~~----~~~~~-~~~-------~~l~~~~~~Lk~pgG~l~~~~~~ 139 (265)
+... +..-+.|+|+... ...|. |.. ..++-+..-|+ -||+++.-.+.
T Consensus 97 ~cr~~l~k~-l~t~~advVLhDgapnVg~~w~~DA~~q~~L~l~al~LA~~~l~-~~g~fvtkvfr 160 (780)
T KOG1098|consen 97 ECRSKLRKI-LKTWKADVVLHDGAPNVGGNWVQDAFQQACLTLRALKLATEFLA-KGGTFVTKVFR 160 (780)
T ss_pred HHHHHHHHH-HHhCCCcEEeecCCCccchhHHHHHHHhhHHHHHHHHHHHHHHH-hcCcccccccc
Confidence 1111 1233468888654 33455 321 35666777888 79997764443
No 322
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=93.08 E-value=0.14 Score=41.56 Aligned_cols=59 Identities=22% Similarity=0.254 Sum_probs=37.1
Q ss_pred hCCCCcHHHHHHHHh----hCC--CCCeEEEEcCCcchhHHHHH----hcCCcEEEEcCCHHHHHHHHc
Q 024647 15 TRPNYPEELFKFITS----KTT--NHELAWDVGTGSGQAAASLS----GIFENVIGTETSPKQIEFATK 73 (265)
Q Consensus 15 ~rp~y~~~l~~~l~~----~~~--~~~~vlDvGcG~G~~~~~l~----~~~~~v~~vD~s~~~~~~a~~ 73 (265)
..|.||-.+..-|.+ +.+ .+-++.|-.||.|.+.--+. .....|+|.|+++++++.|++
T Consensus 27 G~p~FPVRLAsEi~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~k 95 (246)
T PF11599_consen 27 GFPAFPVRLASEIFQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARK 95 (246)
T ss_dssp TB----HHHHHHHHHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHH
Confidence 556777666555443 332 34679999999997766543 234579999999999999875
No 323
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=92.91 E-value=1.2 Score=32.33 Aligned_cols=89 Identities=17% Similarity=0.141 Sum_probs=55.2
Q ss_pred CCCeEEEEcCCcc-hhHHHHHhcCCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccC-CCCceeEEEecccc
Q 024647 33 NHELAWDVGTGSG-QAAASLSGIFENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVA-AQSTVDLVTIAQAM 110 (265)
Q Consensus 33 ~~~~vlDvGcG~G-~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~Dlv~~~~~~ 110 (265)
...+|+|+|-|-= ..+..|++++.+++++|+++. .++ .++++.. .|+.+-.. --...|+|.+--
T Consensus 13 ~~gkVvEVGiG~~~~VA~~L~e~g~dv~atDI~~~---~a~--~g~~~v~-------DDitnP~~~iY~~A~lIYSiR-- 78 (129)
T COG1255 13 ARGKVVEVGIGFFLDVAKRLAERGFDVLATDINEK---TAP--EGLRFVV-------DDITNPNISIYEGADLIYSIR-- 78 (129)
T ss_pred cCCcEEEEccchHHHHHHHHHHcCCcEEEEecccc---cCc--ccceEEE-------ccCCCccHHHhhCccceeecC--
Confidence 3358999999863 566778889999999999998 444 5677777 34322110 013468887731
Q ss_pred ccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647 111 HWFDLPQFYNQVKWVLKKPNGVIATWCY 138 (265)
Q Consensus 111 ~~~~~~~~l~~~~~~Lk~pgG~l~~~~~ 138 (265)
.++...+.+.++-++-|-.+++...
T Consensus 79 ---pppEl~~~ildva~aVga~l~I~pL 103 (129)
T COG1255 79 ---PPPELQSAILDVAKAVGAPLYIKPL 103 (129)
T ss_pred ---CCHHHHHHHHHHHHhhCCCEEEEec
Confidence 4555555555555533444555443
No 324
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=92.82 E-value=1.3 Score=38.23 Aligned_cols=101 Identities=12% Similarity=0.029 Sum_probs=61.6
Q ss_pred CeEEEEcCCc--chhHHHHHhcCCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhh-hccCCCCceeEEEeccccc
Q 024647 35 ELAWDVGTGS--GQAAASLSGIFENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELE-QNVAAQSTVDLVTIAQAMH 111 (265)
Q Consensus 35 ~~vlDvGcG~--G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~~Dlv~~~~~~~ 111 (265)
++|+=+|||. |.++..|++.+.+|+.++.+.+.++..++..++..... .....-... ..+.+.+++|+|+...=-
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~i~~~-g~~~~~~~~~~~~~~~~~~D~viv~vK~- 80 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQAGGLTLVEQ-GQASLYAIPAETADAAEPIHRLLLACKA- 80 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhcCCeEEeeC-CcceeeccCCCCcccccccCEEEEECCH-
Confidence 5789999996 56777788888899999998776666653223332211 100000000 011123579999876411
Q ss_pred cCChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647 112 WFDLPQFYNQVKWVLKKPNGVIATWCYT 139 (265)
Q Consensus 112 ~~~~~~~l~~~~~~Lk~pgG~l~~~~~~ 139 (265)
.+...+++.+...+. ++..++..-.+
T Consensus 81 -~~~~~al~~l~~~l~-~~t~vv~lQNG 106 (305)
T PRK05708 81 -YDAEPAVASLAHRLA-PGAELLLLQNG 106 (305)
T ss_pred -HhHHHHHHHHHhhCC-CCCEEEEEeCC
Confidence 245678888999999 88877655443
No 325
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=92.76 E-value=2.6 Score=36.59 Aligned_cols=98 Identities=18% Similarity=0.159 Sum_probs=61.9
Q ss_pred CCCCeEEEEcCCc-chhHHHHHhc-CCc-EEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEecc
Q 024647 32 TNHELAWDVGTGS-GQAAASLSGI-FEN-VIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQ 108 (265)
Q Consensus 32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~ 108 (265)
.++.+||-.|+|. |..+..+++. +.+ +++++.++...+.++...........-.. ...+... .....+|+++..
T Consensus 158 ~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~~g~~~~~~~~~~~-~~~~~~~-~~~~~~d~vld~- 234 (343)
T cd08236 158 TLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVARELGADDTINPKEED-VEKVREL-TEGRGADLVIEA- 234 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEecCcccc-HHHHHHH-hCCCCCCEEEEC-
Confidence 4567888888765 6666667664 455 99999998888877653221222211100 1223223 233459999864
Q ss_pred ccccCChhHHHHHHHHHhcCCCcEEEEEe
Q 024647 109 AMHWFDLPQFYNQVKWVLKKPNGVIATWC 137 (265)
Q Consensus 109 ~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~ 137 (265)
......+..+.+.|+ ++|+++...
T Consensus 235 ----~g~~~~~~~~~~~l~-~~G~~v~~g 258 (343)
T cd08236 235 ----AGSPATIEQALALAR-PGGKVVLVG 258 (343)
T ss_pred ----CCCHHHHHHHHHHhh-cCCEEEEEc
Confidence 233467889999999 999988754
No 326
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=92.66 E-value=0.2 Score=43.48 Aligned_cols=108 Identities=14% Similarity=0.157 Sum_probs=70.4
Q ss_pred CCCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcCC---CceEEec-----CCccchhhhhhccC-CCCce
Q 024647 31 TTNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKLP---NIRYELT-----SPAMSIAELEQNVA-AQSTV 101 (265)
Q Consensus 31 ~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~---~~~~~~~-----~~~~~~~d~~~~~~-~~~~~ 101 (265)
..+++.|.|==.|||.+....+..++-|+|.||+-.|+...+... ..+|.+- ...+..+|...-++ ....|
T Consensus 206 v~pGdivyDPFVGTGslLvsaa~FGa~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rsn~~f 285 (421)
T KOG2671|consen 206 VKPGDIVYDPFVGTGSLLVSAAHFGAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRSNLKF 285 (421)
T ss_pred cCCCCEEecCccccCceeeehhhhcceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhhccee
Confidence 368899999999999999999999999999999999988554310 0111110 01111244443332 23468
Q ss_pred eEEEeccc-------------------------cccCC---------hhHHHHHHHHHhcCCCcEEEEEecC
Q 024647 102 DLVTIAQA-------------------------MHWFD---------LPQFYNQVKWVLKKPNGVIATWCYT 139 (265)
Q Consensus 102 Dlv~~~~~-------------------------~~~~~---------~~~~l~~~~~~Lk~pgG~l~~~~~~ 139 (265)
|.|+|.-. -|+.. ....+.-..+.|. -||++++|.+.
T Consensus 286 DaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~-~ggrlv~w~p~ 356 (421)
T KOG2671|consen 286 DAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLV-DGGRLVFWLPT 356 (421)
T ss_pred eEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhh-cCceEEEecCc
Confidence 99998431 12110 1246677789999 89999998874
No 327
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=92.65 E-value=1.1 Score=40.26 Aligned_cols=98 Identities=18% Similarity=0.216 Sum_probs=60.9
Q ss_pred CCCCeEEEEc-CCc-chhHHHHHhcC---C-cEEEEcCCHHHHHHHHcC-C------Cce--EEecCC-ccchhhhhhcc
Q 024647 32 TNHELAWDVG-TGS-GQAAASLSGIF---E-NVIGTETSPKQIEFATKL-P------NIR--YELTSP-AMSIAELEQNV 95 (265)
Q Consensus 32 ~~~~~vlDvG-cG~-G~~~~~l~~~~---~-~v~~vD~s~~~~~~a~~~-~------~~~--~~~~~~-~~~~~d~~~~~ 95 (265)
.++.+||-+| +|. |..+..+++.. + +|+++|.++..++.+++. . +.. .....- ......+..+
T Consensus 174 ~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~v~~~- 252 (410)
T cd08238 174 KPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGIELLYVNPATIDDLHATLMEL- 252 (410)
T ss_pred CCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCceEEEECCCccccHHHHHHHH-
Confidence 4567888887 564 88888888763 2 699999999999988763 1 222 121100 0000112222
Q ss_pred CCCCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEE
Q 024647 96 AAQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATW 136 (265)
Q Consensus 96 ~~~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~ 136 (265)
.....+|+|+... .....+..+.+.|+ ++|.+++.
T Consensus 253 t~g~g~D~vid~~-----g~~~~~~~a~~~l~-~~G~~v~~ 287 (410)
T cd08238 253 TGGQGFDDVFVFV-----PVPELVEEADTLLA-PDGCLNFF 287 (410)
T ss_pred hCCCCCCEEEEcC-----CCHHHHHHHHHHhc-cCCeEEEE
Confidence 1334689888642 22468888999999 88877654
No 328
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=92.63 E-value=1.5 Score=38.80 Aligned_cols=99 Identities=12% Similarity=0.050 Sum_probs=62.3
Q ss_pred CCCCeEEEEcCCc-chhHHHHHhc-CC-cEEEEcCCHHHHHHHHcCCCceEEecC--CccchhhhhhccCCCCceeEEEe
Q 024647 32 TNHELAWDVGTGS-GQAAASLSGI-FE-NVIGTETSPKQIEFATKLPNIRYELTS--PAMSIAELEQNVAAQSTVDLVTI 106 (265)
Q Consensus 32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~--~~~~~~d~~~~~~~~~~~Dlv~~ 106 (265)
.++++||-.|||. |..+..+++. +. +|+++|.++..++.++++.-....... .......+..+. . +.+|+|+-
T Consensus 184 ~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~-~-~g~d~vid 261 (368)
T TIGR02818 184 EEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKLGATDCVNPNDYDKPIQEVIVEIT-D-GGVDYSFE 261 (368)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCeEEcccccchhHHHHHHHHh-C-CCCCEEEE
Confidence 5678899899976 7777777765 45 699999999999988764321112111 000001122221 2 36898886
Q ss_pred ccccccCChhHHHHHHHHHhcCCC-cEEEEEec
Q 024647 107 AQAMHWFDLPQFYNQVKWVLKKPN-GVIATWCY 138 (265)
Q Consensus 107 ~~~~~~~~~~~~l~~~~~~Lk~pg-G~l~~~~~ 138 (265)
. ..-...+.++.+.++ ++ |++++...
T Consensus 262 ~-----~G~~~~~~~~~~~~~-~~~G~~v~~g~ 288 (368)
T TIGR02818 262 C-----IGNVNVMRAALECCH-KGWGESIIIGV 288 (368)
T ss_pred C-----CCCHHHHHHHHHHhh-cCCCeEEEEec
Confidence 4 222457888899998 76 99887654
No 329
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=92.61 E-value=1.6 Score=38.84 Aligned_cols=94 Identities=16% Similarity=0.116 Sum_probs=58.1
Q ss_pred CCCeEEEEcCCc-chhHHHHHhc-CCcEEEEcCCHHH-HHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEeccc
Q 024647 33 NHELAWDVGTGS-GQAAASLSGI-FENVIGTETSPKQ-IEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQA 109 (265)
Q Consensus 33 ~~~~vlDvGcG~-G~~~~~l~~~-~~~v~~vD~s~~~-~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~ 109 (265)
++++||-.|||. |..+..+++. +.+|++++.+++. .+.++++ ++......-. ...+.... +.+|+|+-..
T Consensus 178 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~a~~l-Ga~~~i~~~~--~~~v~~~~---~~~D~vid~~- 250 (375)
T PLN02178 178 SGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEKEREAIDRL-GADSFLVTTD--SQKMKEAV---GTMDFIIDTV- 250 (375)
T ss_pred CCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCChHHhHHHHHhC-CCcEEEcCcC--HHHHHHhh---CCCcEEEECC-
Confidence 567888889875 7777777765 5689999887654 4555543 2222211100 01122221 2489888642
Q ss_pred cccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647 110 MHWFDLPQFYNQVKWVLKKPNGVIATWCY 138 (265)
Q Consensus 110 ~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~ 138 (265)
.....+..+.+.|+ ++|+++....
T Consensus 251 ----G~~~~~~~~~~~l~-~~G~iv~vG~ 274 (375)
T PLN02178 251 ----SAEHALLPLFSLLK-VSGKLVALGL 274 (375)
T ss_pred ----CcHHHHHHHHHhhc-CCCEEEEEcc
Confidence 23457888899999 9999987654
No 330
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=92.57 E-value=2 Score=37.62 Aligned_cols=99 Identities=18% Similarity=0.168 Sum_probs=60.6
Q ss_pred CCCCeEEEEcCCc-chhHHHHHhc-CC-cEEEEcCCHHHHHHHHcCCCceEEec-CCccchhhhhhccCCCCceeEEEec
Q 024647 32 TNHELAWDVGTGS-GQAAASLSGI-FE-NVIGTETSPKQIEFATKLPNIRYELT-SPAMSIAELEQNVAAQSTVDLVTIA 107 (265)
Q Consensus 32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~Dlv~~~ 107 (265)
.++.+||-.|+|. |..+..+++. +. +|++++.++...+.+++.. +..... .-......+.+. ...+.+|+|+-.
T Consensus 171 ~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~g-a~~~i~~~~~~~~~~l~~~-~~~~~~d~vid~ 248 (351)
T cd08233 171 KPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEELG-ATIVLDPTEVDVVAEVRKL-TGGGGVDVSFDC 248 (351)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhC-CCEEECCCccCHHHHHHHH-hCCCCCCEEEEC
Confidence 4567788888754 5666666654 45 6999999999888876542 222211 110011122222 233459999864
Q ss_pred cccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647 108 QAMHWFDLPQFYNQVKWVLKKPNGVIATWCY 138 (265)
Q Consensus 108 ~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~ 138 (265)
. .....+..+.+.|+ ++|.++....
T Consensus 249 ~-----g~~~~~~~~~~~l~-~~G~~v~~g~ 273 (351)
T cd08233 249 A-----GVQATLDTAIDALR-PRGTAVNVAI 273 (351)
T ss_pred C-----CCHHHHHHHHHhcc-CCCEEEEEcc
Confidence 2 22457888899999 9999887554
No 331
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=92.35 E-value=0.37 Score=42.40 Aligned_cols=41 Identities=29% Similarity=0.319 Sum_probs=34.0
Q ss_pred CCCeEEEEcCCcchhHHHHHhcC-CcEEEEcCCHHHHHHHHc
Q 024647 33 NHELAWDVGTGSGQAAASLSGIF-ENVIGTETSPKQIEFATK 73 (265)
Q Consensus 33 ~~~~vlDvGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~ 73 (265)
+-+.|+|+|.|.|.+++.++=.+ -.|.+||-|....+.|++
T Consensus 153 gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 153 GIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred CCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHH
Confidence 34669999999999999998554 579999999888777664
No 332
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=92.27 E-value=2.2 Score=35.45 Aligned_cols=99 Identities=14% Similarity=0.148 Sum_probs=49.4
Q ss_pred CCCeEEEEcCCcc-hhHHHHHhcCCcEEEEcCCHHHHHHHHcC-----CCceEEecCCccchhhhhh-ccC-CCCceeEE
Q 024647 33 NHELAWDVGTGSG-QAAASLSGIFENVIGTETSPKQIEFATKL-----PNIRYELTSPAMSIAELEQ-NVA-AQSTVDLV 104 (265)
Q Consensus 33 ~~~~vlDvGcG~G-~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~~~~~d~~~-~~~-~~~~~Dlv 104 (265)
.+++||-+|=.-- .++..+.....+|+.+|+++.+++..++. -+++... .|+.+ +|. -.+.||++
T Consensus 44 ~gk~il~lGDDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~-------~DlR~~LP~~~~~~fD~f 116 (243)
T PF01861_consen 44 EGKRILFLGDDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAVH-------YDLRDPLPEELRGKFDVF 116 (243)
T ss_dssp TT-EEEEES-TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE----------TTS---TTTSS-BSEE
T ss_pred cCCEEEEEcCCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEE-------ecccccCCHHHhcCCCEE
Confidence 5688999985542 22333333445899999999999976541 2355555 45433 221 23789999
Q ss_pred EeccccccCChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647 105 TIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCYT 139 (265)
Q Consensus 105 ~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~~ 139 (265)
+..-..---...-++.+....|| ..|......+.
T Consensus 117 ~TDPPyT~~G~~LFlsRgi~~Lk-~~g~~gy~~~~ 150 (243)
T PF01861_consen 117 FTDPPYTPEGLKLFLSRGIEALK-GEGCAGYFGFT 150 (243)
T ss_dssp EE---SSHHHHHHHHHHHHHTB--STT-EEEEEE-
T ss_pred EeCCCCCHHHHHHHHHHHHHHhC-CCCceEEEEEe
Confidence 98532111122368999999999 55533443443
No 333
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=92.23 E-value=3 Score=36.28 Aligned_cols=100 Identities=15% Similarity=0.203 Sum_probs=62.2
Q ss_pred CCCCeEEEEcCCc-chhHHHHHhc-CCc-EEEEcCCHHHHHHHHcCCCceEEecCCccc---hhhhhhccCCCCceeEEE
Q 024647 32 TNHELAWDVGTGS-GQAAASLSGI-FEN-VIGTETSPKQIEFATKLPNIRYELTSPAMS---IAELEQNVAAQSTVDLVT 105 (265)
Q Consensus 32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~---~~d~~~~~~~~~~~Dlv~ 105 (265)
.++.+||-.|+|. |..+..+++. +.+ |++++.++...+.+++.....+....-... ...+... .....+|+|+
T Consensus 161 ~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~~~-~~~~~~d~vl 239 (343)
T cd05285 161 RPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKELGATHTVNVRTEDTPESAEKIAEL-LGGKGPDVVI 239 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCcEEeccccccchhHHHHHHHH-hCCCCCCEEE
Confidence 5667777788775 6777777765 456 899999988888776542212222111000 0122222 2445699998
Q ss_pred eccccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647 106 IAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCY 138 (265)
Q Consensus 106 ~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~ 138 (265)
-... ....++.+.+.|+ ++|.++....
T Consensus 240 d~~g-----~~~~~~~~~~~l~-~~G~~v~~g~ 266 (343)
T cd05285 240 ECTG-----AESCIQTAIYATR-PGGTVVLVGM 266 (343)
T ss_pred ECCC-----CHHHHHHHHHHhh-cCCEEEEEcc
Confidence 6422 2347889999999 9999886554
No 334
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=92.03 E-value=2.3 Score=37.59 Aligned_cols=99 Identities=19% Similarity=0.159 Sum_probs=61.9
Q ss_pred CCCCeEEEEcCCc-chhHHHHHhc-CC-cEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEecc
Q 024647 32 TNHELAWDVGTGS-GQAAASLSGI-FE-NVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQ 108 (265)
Q Consensus 32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~ 108 (265)
.++++||-.|+|. |..+..+++. +. .++++|.++...+.+++..-..+...........+.... ...+|+|+-.
T Consensus 185 ~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~g~~~~i~~~~~~~~~~v~~~~--~~~~d~vld~- 261 (365)
T cd08278 185 RPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKELGATHVINPKEEDLVAAIREIT--GGGVDYALDT- 261 (365)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCcEEecCCCcCHHHHHHHHh--CCCCcEEEEC-
Confidence 4567888888765 6666667664 45 499999999988887764322222211100111222222 3468999854
Q ss_pred ccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647 109 AMHWFDLPQFYNQVKWVLKKPNGVIATWCY 138 (265)
Q Consensus 109 ~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~ 138 (265)
......+..+.+.|+ ++|.++....
T Consensus 262 ----~g~~~~~~~~~~~l~-~~G~~v~~g~ 286 (365)
T cd08278 262 ----TGVPAVIEQAVDALA-PRGTLALVGA 286 (365)
T ss_pred ----CCCcHHHHHHHHHhc-cCCEEEEeCc
Confidence 222457889999999 8999887553
No 335
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=91.94 E-value=2.2 Score=37.62 Aligned_cols=99 Identities=16% Similarity=0.080 Sum_probs=62.0
Q ss_pred CCCCeEEEEcCCc-chhHHHHHhc-CC-cEEEEcCCHHHHHHHHcCCCceEEecCC--ccchhhhhhccCCCCceeEEEe
Q 024647 32 TNHELAWDVGTGS-GQAAASLSGI-FE-NVIGTETSPKQIEFATKLPNIRYELTSP--AMSIAELEQNVAAQSTVDLVTI 106 (265)
Q Consensus 32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~--~~~~~d~~~~~~~~~~~Dlv~~ 106 (265)
.++++||-.|+|. |.++..+++. +. +|+++|.+++.++.++++....+..... .-....+..+ ..+.+|+++-
T Consensus 186 ~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~v~~~--~~~~~d~vid 263 (369)
T cd08301 186 KKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKKFGVTEFVNPKDHDKPVQEVIAEM--TGGGVDYSFE 263 (369)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEcccccchhHHHHHHHH--hCCCCCEEEE
Confidence 5678888889875 6666677765 44 6999999999999888753222222110 0000112222 2236888885
Q ss_pred ccccccCChhHHHHHHHHHhcCCC-cEEEEEec
Q 024647 107 AQAMHWFDLPQFYNQVKWVLKKPN-GVIATWCY 138 (265)
Q Consensus 107 ~~~~~~~~~~~~l~~~~~~Lk~pg-G~l~~~~~ 138 (265)
. ......+..+.+.++ +| |++++...
T Consensus 264 ~-----~G~~~~~~~~~~~~~-~~~g~~v~~g~ 290 (369)
T cd08301 264 C-----TGNIDAMISAFECVH-DGWGVTVLLGV 290 (369)
T ss_pred C-----CCChHHHHHHHHHhh-cCCCEEEEECc
Confidence 4 223457888889999 86 99887554
No 336
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=91.75 E-value=1.2 Score=39.87 Aligned_cols=99 Identities=10% Similarity=0.111 Sum_probs=66.4
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcCC---cEEEEcCCHHHHHHHHc----C--CCceEEecCCccchhhhhhcc---CCCC
Q 024647 32 TNHELAWDVGTGSGQAAASLSGIFE---NVIGTETSPKQIEFATK----L--PNIRYELTSPAMSIAELEQNV---AAQS 99 (265)
Q Consensus 32 ~~~~~vlDvGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~----~--~~~~~~~~~~~~~~~d~~~~~---~~~~ 99 (265)
.++.+|||+.+-+|.=|.+++.... -|++-|.+..-+...+. + .|..... .|...++ ++.
T Consensus 240 q~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n-------~D~~ef~~~~~~~- 311 (460)
T KOG1122|consen 240 QPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSN-------YDGREFPEKEFPG- 311 (460)
T ss_pred CCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEc-------cCcccccccccCc-
Confidence 3568999999999999998887654 49999999988876653 2 2322222 3333222 233
Q ss_pred ceeEEEeccc-----c-------ccCC-----------hhHHHHHHHHHhcCCCcEEEEEecC
Q 024647 100 TVDLVTIAQA-----M-------HWFD-----------LPQFYNQVKWVLKKPNGVIATWCYT 139 (265)
Q Consensus 100 ~~Dlv~~~~~-----~-------~~~~-----------~~~~l~~~~~~Lk~pgG~l~~~~~~ 139 (265)
+||-|+.... + -|.. ..+++..+..+++ +||+|+..+..
T Consensus 312 ~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~-~GGvLVYSTCS 373 (460)
T KOG1122|consen 312 SFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVK-AGGVLVYSTCS 373 (460)
T ss_pred ccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhcc-CCcEEEEEeee
Confidence 7998885331 1 1110 1257788899999 99999987765
No 337
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=91.70 E-value=0.24 Score=41.57 Aligned_cols=40 Identities=20% Similarity=0.140 Sum_probs=30.0
Q ss_pred CCeEEEEcCCcchhHHHHHhcC----------CcEEEEcCCHHHHHHHHc
Q 024647 34 HELAWDVGTGSGQAAASLSGIF----------ENVIGTETSPKQIEFATK 73 (265)
Q Consensus 34 ~~~vlDvGcG~G~~~~~l~~~~----------~~v~~vD~s~~~~~~a~~ 73 (265)
+-+|+|+|+|+|.++..+++.. -+++.||+|+.+.+.-++
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~ 68 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKE 68 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHH
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHH
Confidence 3689999999999999987532 259999999999875543
No 338
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=91.60 E-value=2.6 Score=36.39 Aligned_cols=97 Identities=20% Similarity=0.175 Sum_probs=61.3
Q ss_pred CCCCeEEEEcCCc-chhHHHHHhc-CCc-EEEEcCCHHHHHHHHcCCCceEEecCCccchhhh-hhccCCCCceeEEEec
Q 024647 32 TNHELAWDVGTGS-GQAAASLSGI-FEN-VIGTETSPKQIEFATKLPNIRYELTSPAMSIAEL-EQNVAAQSTVDLVTIA 107 (265)
Q Consensus 32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~~Dlv~~~ 107 (265)
.++.+||-+|+|. |..+..+++. +.+ +++++.++...+.+++..-.......- .+. .........+|+++..
T Consensus 158 ~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~----~~~~~~~~~~~~~vd~v~~~ 233 (334)
T cd08234 158 KPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGATETVDPSR----EDPEAQKEDNPYGFDVVIEA 233 (334)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCeEEecCCC----CCHHHHHHhcCCCCcEEEEC
Confidence 4567888888763 6666666665 446 899999999888876532112221110 000 0011234569999864
Q ss_pred cccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647 108 QAMHWFDLPQFYNQVKWVLKKPNGVIATWCY 138 (265)
Q Consensus 108 ~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~ 138 (265)
......+.++.+.|+ ++|.++....
T Consensus 234 -----~~~~~~~~~~~~~l~-~~G~~v~~g~ 258 (334)
T cd08234 234 -----TGVPKTLEQAIEYAR-RGGTVLVFGV 258 (334)
T ss_pred -----CCChHHHHHHHHHHh-cCCEEEEEec
Confidence 223468888999999 9999987554
No 339
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=91.50 E-value=3.5 Score=36.03 Aligned_cols=100 Identities=13% Similarity=0.108 Sum_probs=66.9
Q ss_pred CCCCeEEEEcCCc-chhHHHHHhc-CC-cEEEEcCCHHHHHHHHcCCCceEEecCCc-cchhhhhhccCCCCceeEEEec
Q 024647 32 TNHELAWDVGTGS-GQAAASLSGI-FE-NVIGTETSPKQIEFATKLPNIRYELTSPA-MSIAELEQNVAAQSTVDLVTIA 107 (265)
Q Consensus 32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~-~~~~d~~~~~~~~~~~Dlv~~~ 107 (265)
+++.+|.-+|||. |..+..-++. ++ +|+++|+++.-++.|+++...++....-. .+..-+.++ .++..|.++-.
T Consensus 184 ~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~fGAT~~vn~~~~~~vv~~i~~~--T~gG~d~~~e~ 261 (366)
T COG1062 184 EPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGATHFVNPKEVDDVVEAIVEL--TDGGADYAFEC 261 (366)
T ss_pred CCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhcCCceeecchhhhhHHHHHHHh--cCCCCCEEEEc
Confidence 4678899999986 6666665543 44 69999999999999999766666654311 011112222 23356666432
Q ss_pred cccccCChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647 108 QAMHWFDLPQFYNQVKWVLKKPNGVIATWCYT 139 (265)
Q Consensus 108 ~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~~ 139 (265)
......++.....+. .+|..++....
T Consensus 262 -----~G~~~~~~~al~~~~-~~G~~v~iGv~ 287 (366)
T COG1062 262 -----VGNVEVMRQALEATH-RGGTSVIIGVA 287 (366)
T ss_pred -----cCCHHHHHHHHHHHh-cCCeEEEEecC
Confidence 344569999999999 79998876654
No 340
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=91.47 E-value=0.47 Score=36.75 Aligned_cols=98 Identities=13% Similarity=0.089 Sum_probs=55.6
Q ss_pred CCeEEEEcCCcchhHHHHHhcCC-cEEEEcCCHHHHHHHHcCCCceEEecCCccchhh-hhhccCCCCceeEEEeccccc
Q 024647 34 HELAWDVGTGSGQAAASLSGIFE-NVIGTETSPKQIEFATKLPNIRYELTSPAMSIAE-LEQNVAAQSTVDLVTIAQAMH 111 (265)
Q Consensus 34 ~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d-~~~~~~~~~~~Dlv~~~~~~~ 111 (265)
+++.+-+|...=-.=....++++ +|+.||.++--++.--+ ..+.-.. ..| +.++..-.++||.+.|..++.
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L~i~~~~~-dr~ssi~------p~df~~~~~~y~~~fD~~as~~siE 74 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQHGAAKILTVEYNKLEIQEEFR-DRLSSIL------PVDFAKNWQKYAGSFDFAASFSSIE 74 (177)
T ss_pred CceEEEEecCCchhhHHHHHcCCceEEEEeecccccCcccc-ccccccc------HHHHHHHHHHhhccchhhheechhc
Confidence 34567777653322223334555 58888876533221110 1110000 011 122323457899999988775
Q ss_pred cCC------h------hHHHHHHHHHhcCCCcEEEEEecC
Q 024647 112 WFD------L------PQFYNQVKWVLKKPNGVIATWCYT 139 (265)
Q Consensus 112 ~~~------~------~~~l~~~~~~Lk~pgG~l~~~~~~ 139 (265)
++. | ...+.++.++|| |||.|++..+-
T Consensus 75 h~GLGRYGDPidp~Gdl~~m~~i~~vLK-~GG~L~l~vPv 113 (177)
T PF03269_consen 75 HFGLGRYGDPIDPIGDLRAMAKIKCVLK-PGGLLFLGVPV 113 (177)
T ss_pred cccccccCCCCCccccHHHHHHHHHhhc-cCCeEEEEeec
Confidence 442 2 368889999999 99999986664
No 341
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=91.46 E-value=0.67 Score=42.15 Aligned_cols=114 Identities=17% Similarity=0.163 Sum_probs=71.9
Q ss_pred CCeEEEEcCCcchhHHHHHhcCC--cEEEEcCCHHHHHHHHcC--------CCceEEecCCccchhhhhhcc---CCCCc
Q 024647 34 HELAWDVGTGSGQAAASLSGIFE--NVIGTETSPKQIEFATKL--------PNIRYELTSPAMSIAELEQNV---AAQST 100 (265)
Q Consensus 34 ~~~vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~--------~~~~~~~~~~~~~~~d~~~~~---~~~~~ 100 (265)
...+|-+|-|.|.+...+....+ .+++|+++|.|++.|+.. .+++...+. ..++++. ..+..
T Consensus 296 ~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl-----~~~~~~~k~~~~~~~ 370 (482)
T KOG2352|consen 296 GGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGL-----DFLQRTAKSQQEDIC 370 (482)
T ss_pred cCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhhhhhhhHhhch-----HHHHHHhhccccccC
Confidence 35689999999999999877665 699999999999999852 122222211 1122221 24557
Q ss_pred eeEEEecc---ccccC--Ch-----hHHHHHHHHHhcCCCcEEEEE-ecCCCCCChHHHHhhcc
Q 024647 101 VDLVTIAQ---AMHWF--DL-----PQFYNQVKWVLKKPNGVIATW-CYTVPEVNVSVDAVFQP 153 (265)
Q Consensus 101 ~Dlv~~~~---~~~~~--~~-----~~~l~~~~~~Lk~pgG~l~~~-~~~~~~~~~~~~~~~~~ 153 (265)
||++...- -.|=. .+ ..++..+..+|. |.|.+++- ...+..+...+..-++.
T Consensus 371 ~dvl~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~-p~g~f~inlv~r~~~~~~~~~~~l~~ 433 (482)
T KOG2352|consen 371 PDVLMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILP-PRGMFIINLVTRNSSFKDEVLMNLAK 433 (482)
T ss_pred CcEEEEECCCCCcccCcCCchHHHHHHHHHHHhhccC-ccceEEEEEecCCcchhHHHHHhhhh
Confidence 99988632 12222 22 357888999999 99999873 33344555555443333
No 342
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=91.43 E-value=4.1 Score=35.42 Aligned_cols=100 Identities=21% Similarity=0.235 Sum_probs=59.1
Q ss_pred CCCCeEEEEcCCc-chhHHHHHhc-C-CcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEecc
Q 024647 32 TNHELAWDVGTGS-GQAAASLSGI-F-ENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQ 108 (265)
Q Consensus 32 ~~~~~vlDvGcG~-G~~~~~l~~~-~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~ 108 (265)
.++.+||=.|+|. |..+..+++. + .+|++++.++.....+++..-..+....-......+..+ .....+|+|+...
T Consensus 165 ~~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~i~~~-~~~~~~d~vld~~ 243 (345)
T cd08286 165 KPGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKKLGATHTVNSAKGDAIEQVLEL-TDGRGVDVVIEAV 243 (345)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCceeccccccHHHHHHHH-hCCCCCCEEEECC
Confidence 4556776678754 5555556654 4 468899999888777765421111111100000112222 2345699998542
Q ss_pred ccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647 109 AMHWFDLPQFYNQVKWVLKKPNGVIATWCY 138 (265)
Q Consensus 109 ~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~ 138 (265)
.....+..+.+.|+ ++|+++....
T Consensus 244 -----g~~~~~~~~~~~l~-~~g~~v~~g~ 267 (345)
T cd08286 244 -----GIPATFELCQELVA-PGGHIANVGV 267 (345)
T ss_pred -----CCHHHHHHHHHhcc-CCcEEEEecc
Confidence 23456888889999 9999986543
No 343
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=91.39 E-value=0.25 Score=40.59 Aligned_cols=97 Identities=15% Similarity=0.180 Sum_probs=57.0
Q ss_pred hCCCCcHHHHHHHHhhC----CCCCeEEEEcCCcchhHHH--HHhcCCcEEEEcCCHHHHHHHHcC--C------CceEE
Q 024647 15 TRPNYPEELFKFITSKT----TNHELAWDVGTGSGQAAAS--LSGIFENVIGTETSPKQIEFATKL--P------NIRYE 80 (265)
Q Consensus 15 ~rp~y~~~l~~~l~~~~----~~~~~vlDvGcG~G~~~~~--l~~~~~~v~~vD~s~~~~~~a~~~--~------~~~~~ 80 (265)
.|.+|---+.+.|.+.. ++.-++||||.|.-..=-. ..+.+.+.+|.|+++..++.|+.. . .++..
T Consensus 56 gRAdYih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr 135 (292)
T COG3129 56 GRADYIHHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLR 135 (292)
T ss_pred ChhHHHHHHHHHHHhcCCCCCcCceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEE
Confidence 45556555666666543 2456789998875422111 234567899999999999988741 1 12222
Q ss_pred ecCCccchhhhhhccCCCCceeEEEeccccccC
Q 024647 81 LTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWF 113 (265)
Q Consensus 81 ~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~ 113 (265)
...-. ..-+..+.-.++.||+++|+-.+|-.
T Consensus 136 ~qk~~--~~if~giig~nE~yd~tlCNPPFh~s 166 (292)
T COG3129 136 RQKDS--DAIFNGIIGKNERYDATLCNPPFHDS 166 (292)
T ss_pred eccCc--cccccccccccceeeeEecCCCcchh
Confidence 21100 00011221236789999999998854
No 344
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=91.28 E-value=0.42 Score=36.41 Aligned_cols=109 Identities=14% Similarity=0.131 Sum_probs=53.6
Q ss_pred HHHHHHHhhC-CCCCeEEEEcCCcchhHHHHHhcCC--cEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCC
Q 024647 22 ELFKFITSKT-TNHELAWDVGTGSGQAAASLSGIFE--NVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQ 98 (265)
Q Consensus 22 ~l~~~l~~~~-~~~~~vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 98 (265)
..+++..... ..+.-|||+|-|.|..=-+|.+.++ +|++.|-.-..-..+.. +.-.++.++++-+ +..++.-.
T Consensus 16 ~~L~~a~~~v~~~~G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~l~~hp~~~P-~~~~~ilGdi~~t---l~~~~~~g 91 (160)
T PF12692_consen 16 DCLNWAAAQVAGLPGPVLELGLGNGRTYDHLREIFPDRRIYVFDRALACHPSSTP-PEEDLILGDIRET---LPALARFG 91 (160)
T ss_dssp HHHHHHHHHTTT--S-EEEE--TTSHHHHHHHHH--SS-EEEEESS--S-GGG----GGGEEES-HHHH---HHHHHHH-
T ss_pred HHHHHHHHHhcCCCCceEEeccCCCccHHHHHHhCCCCeEEEEeeecccCCCCCC-chHheeeccHHHH---hHHHHhcC
Confidence 3455555544 3446799999999999999999886 59988864332222221 3456677443211 11111223
Q ss_pred CceeEEEeccccccCChh-----HHHHHHHHHhcCCCcEEEE
Q 024647 99 STVDLVTIAQAMHWFDLP-----QFYNQVKWVLKKPNGVIAT 135 (265)
Q Consensus 99 ~~~Dlv~~~~~~~~~~~~-----~~l~~~~~~Lk~pgG~l~~ 135 (265)
.+.-++.+....|.-+.. .+-..+..+|. |||.++-
T Consensus 92 ~~a~laHaD~G~g~~~~d~a~a~~lspli~~~la-~gGi~vS 132 (160)
T PF12692_consen 92 AGAALAHADIGTGDKEKDDATAAWLSPLIAPVLA-PGGIMVS 132 (160)
T ss_dssp S-EEEEEE----S-HHHHHHHHHHHHHHHGGGEE-EEEEEEE
T ss_pred CceEEEEeecCCCCcchhHHHHHhhhHHHHHHhc-CCcEEEe
Confidence 456666666666654322 23445678889 8998875
No 345
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=91.24 E-value=3.7 Score=35.41 Aligned_cols=98 Identities=17% Similarity=0.082 Sum_probs=61.5
Q ss_pred CCCCeEEEEcC-C-cchhHHHHHhc-CCcEEEEcCCHHHHHHHHcCCCceEEecCC-ccchhhhhhccCCCCceeEEEec
Q 024647 32 TNHELAWDVGT-G-SGQAAASLSGI-FENVIGTETSPKQIEFATKLPNIRYELTSP-AMSIAELEQNVAAQSTVDLVTIA 107 (265)
Q Consensus 32 ~~~~~vlDvGc-G-~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~-~~~~~d~~~~~~~~~~~Dlv~~~ 107 (265)
.++.+||=.|+ | .|..+..+++. +.+|++++.+++..+.++++.--......- .......... ..+.+|+|+-.
T Consensus 137 ~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~--~~~gvdvv~d~ 214 (325)
T TIGR02825 137 KGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKKLGFDVAFNYKTVKSLEETLKKA--SPDGYDCYFDN 214 (325)
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEeccccccHHHHHHHh--CCCCeEEEEEC
Confidence 56788888884 3 47777777765 568999999999888887643212221110 0000111222 23469999864
Q ss_pred cccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647 108 QAMHWFDLPQFYNQVKWVLKKPNGVIATWCY 138 (265)
Q Consensus 108 ~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~ 138 (265)
. . ...+..+.+.|+ ++|+++....
T Consensus 215 ~-----G-~~~~~~~~~~l~-~~G~iv~~G~ 238 (325)
T TIGR02825 215 V-----G-GEFSNTVIGQMK-KFGRIAICGA 238 (325)
T ss_pred C-----C-HHHHHHHHHHhC-cCcEEEEecc
Confidence 2 2 235688899999 9999987543
No 346
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=91.21 E-value=4.7 Score=35.24 Aligned_cols=101 Identities=16% Similarity=0.137 Sum_probs=64.2
Q ss_pred CCCCCeEEEEcCC--cchhHHHHHhcCC-cEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEec
Q 024647 31 TTNHELAWDVGTG--SGQAAASLSGIFE-NVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIA 107 (265)
Q Consensus 31 ~~~~~~vlDvGcG--~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~ 107 (265)
.+++++||-.|+. -|.++.+|++... .++++--+++-.+.++++..-..+.-.-+.....+.++ .....+|+|+..
T Consensus 140 l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~~lGAd~vi~y~~~~~~~~v~~~-t~g~gvDvv~D~ 218 (326)
T COG0604 140 LKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKELGADHVINYREEDFVEQVREL-TGGKGVDVVLDT 218 (326)
T ss_pred CCCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHHhcCCCEEEcCCcccHHHHHHHH-cCCCCceEEEEC
Confidence 3567889888854 3688888888764 88888888877777776533222221110011222223 233479999975
Q ss_pred cccccCChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647 108 QAMHWFDLPQFYNQVKWVLKKPNGVIATWCYT 139 (265)
Q Consensus 108 ~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~~ 139 (265)
-. ...+.+..+.|+ ++|.++.....
T Consensus 219 vG------~~~~~~~l~~l~-~~G~lv~ig~~ 243 (326)
T COG0604 219 VG------GDTFAASLAALA-PGGRLVSIGAL 243 (326)
T ss_pred CC------HHHHHHHHHHhc-cCCEEEEEecC
Confidence 33 457777899999 89999876553
No 347
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=91.06 E-value=3.2 Score=36.12 Aligned_cols=99 Identities=19% Similarity=0.193 Sum_probs=58.9
Q ss_pred CCCCeEEEEcCCc-chhHHHHHhc-CC-cEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEecc
Q 024647 32 TNHELAWDVGTGS-GQAAASLSGI-FE-NVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQ 108 (265)
Q Consensus 32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~ 108 (265)
.++.+||-.|||. |..+..+++. +. +|++++-++.-...++++.-..+......... .+..+ ...+.+|+|+..-
T Consensus 162 ~~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~-~~~~~vd~vld~~ 239 (341)
T cd05281 162 VSGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKKMGADVVINPREEDVV-EVKSV-TDGTGVDVVLEMS 239 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCcceeeCcccccHH-HHHHH-cCCCCCCEEEECC
Confidence 4556777778765 6677777765 44 58888888877776665321111111110000 12222 2345789998642
Q ss_pred ccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647 109 AMHWFDLPQFYNQVKWVLKKPNGVIATWCY 138 (265)
Q Consensus 109 ~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~ 138 (265)
.......++.+.|+ ++|.++....
T Consensus 240 -----g~~~~~~~~~~~l~-~~G~~v~~g~ 263 (341)
T cd05281 240 -----GNPKAIEQGLKALT-PGGRVSILGL 263 (341)
T ss_pred -----CCHHHHHHHHHHhc-cCCEEEEEcc
Confidence 22457888899999 9999886543
No 348
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=91.01 E-value=4.3 Score=35.11 Aligned_cols=99 Identities=16% Similarity=0.136 Sum_probs=60.8
Q ss_pred CCCCeEEEEcCCc-chhHHHHHhc-C-CcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEecc
Q 024647 32 TNHELAWDVGTGS-GQAAASLSGI-F-ENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQ 108 (265)
Q Consensus 32 ~~~~~vlDvGcG~-G~~~~~l~~~-~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~ 108 (265)
.++.+||-.|+|. |..+..+++. + .+|++++.++...+.+++..-......... ....+..+ .+...+|+|+...
T Consensus 166 ~~~~~vlI~g~~~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~i~~~-~~~~~~dvvld~~ 243 (340)
T cd05284 166 DPGSTVVVIGVGGLGHIAVQILRALTPATVIAVDRSEEALKLAERLGADHVLNASDD-VVEEVREL-TGGRGADAVIDFV 243 (340)
T ss_pred CCCCEEEEEcCcHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHhCCcEEEcCCcc-HHHHHHHH-hCCCCCCEEEEcC
Confidence 4567888888664 5555556654 4 589999999888887765421122221111 11222223 2334699998642
Q ss_pred ccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647 109 AMHWFDLPQFYNQVKWVLKKPNGVIATWCY 138 (265)
Q Consensus 109 ~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~ 138 (265)
.....+.++.+.|+ ++|+++....
T Consensus 244 -----g~~~~~~~~~~~l~-~~g~~i~~g~ 267 (340)
T cd05284 244 -----GSDETLALAAKLLA-KGGRYVIVGY 267 (340)
T ss_pred -----CCHHHHHHHHHHhh-cCCEEEEEcC
Confidence 22457888899999 9999986543
No 349
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=90.87 E-value=4.1 Score=35.01 Aligned_cols=97 Identities=16% Similarity=0.080 Sum_probs=61.4
Q ss_pred CCCCeEEEEcC--CcchhHHHHHhc-CCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEecc
Q 024647 32 TNHELAWDVGT--GSGQAAASLSGI-FENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQ 108 (265)
Q Consensus 32 ~~~~~vlDvGc--G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~ 108 (265)
.++.+||-.|+ |.|..+..+++. +.+|++++.+++..+.++++.-..............+..+ ..+.+|+|+-..
T Consensus 142 ~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~~Ga~~vi~~~~~~~~~~v~~~--~~~gvd~vld~~ 219 (329)
T cd08294 142 KAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKELGFDAVFNYKTVSLEEALKEA--APDGIDCYFDNV 219 (329)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEeCCCccHHHHHHHH--CCCCcEEEEECC
Confidence 46678888874 347777777765 5689999999998888876432222222111111122222 225699988542
Q ss_pred ccccCChhHHHHHHHHHhcCCCcEEEEEe
Q 024647 109 AMHWFDLPQFYNQVKWVLKKPNGVIATWC 137 (265)
Q Consensus 109 ~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~ 137 (265)
. ...+..+.+.|+ ++|+++...
T Consensus 220 g------~~~~~~~~~~l~-~~G~iv~~g 241 (329)
T cd08294 220 G------GEFSSTVLSHMN-DFGRVAVCG 241 (329)
T ss_pred C------HHHHHHHHHhhc-cCCEEEEEc
Confidence 2 256788999999 999998654
No 350
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=90.85 E-value=4.2 Score=35.64 Aligned_cols=99 Identities=17% Similarity=0.096 Sum_probs=59.7
Q ss_pred CCCeEEEEcCCc-chhHHHHHhc-CC-cEEEEcCCHHHHHHHHcCCCceEEecCCccch---hhhhhccCCCCceeEEEe
Q 024647 33 NHELAWDVGTGS-GQAAASLSGI-FE-NVIGTETSPKQIEFATKLPNIRYELTSPAMSI---AELEQNVAAQSTVDLVTI 106 (265)
Q Consensus 33 ~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~---~d~~~~~~~~~~~Dlv~~ 106 (265)
++.+||-.|+|. |..+..+++. +. +|++++.++...+.+++..-..++........ ..+..+ .....+|+|+.
T Consensus 177 ~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~-~~~~~~d~vid 255 (361)
T cd08231 177 AGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELAREFGADATIDIDELPDPQRRAIVRDI-TGGRGADVVIE 255 (361)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCCeEEcCcccccHHHHHHHHHH-hCCCCCcEEEE
Confidence 566788888764 5666666654 55 79999999988887765421112211100000 012222 23356999985
Q ss_pred ccccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647 107 AQAMHWFDLPQFYNQVKWVLKKPNGVIATWCY 138 (265)
Q Consensus 107 ~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~ 138 (265)
.. .....+....+.|+ ++|.++....
T Consensus 256 ~~-----g~~~~~~~~~~~l~-~~G~~v~~g~ 281 (361)
T cd08231 256 AS-----GHPAAVPEGLELLR-RGGTYVLVGS 281 (361)
T ss_pred CC-----CChHHHHHHHHHhc-cCCEEEEEcC
Confidence 42 22357888899999 9999987553
No 351
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=90.73 E-value=3.4 Score=36.49 Aligned_cols=99 Identities=15% Similarity=0.083 Sum_probs=60.9
Q ss_pred CCCCeEEEEcCCc-chhHHHHHhc-CC-cEEEEcCCHHHHHHHHcCCCceEEecCC--ccchhhhhhccCCCCceeEEEe
Q 024647 32 TNHELAWDVGTGS-GQAAASLSGI-FE-NVIGTETSPKQIEFATKLPNIRYELTSP--AMSIAELEQNVAAQSTVDLVTI 106 (265)
Q Consensus 32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~--~~~~~d~~~~~~~~~~~Dlv~~ 106 (265)
.++.+||-.|+|. |..+..+++. +. +|+++|.++..++.++++.-..+....- ......+..+. . +.+|+|+-
T Consensus 183 ~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~-~-~g~d~vid 260 (365)
T cd08277 183 EPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEFGATDFINPKDSDKPVSEVIREMT-G-GGVDYSFE 260 (365)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCCcEeccccccchHHHHHHHHh-C-CCCCEEEE
Confidence 4678888889875 6666666665 45 6999999999998887642111221110 00001122221 2 46899985
Q ss_pred ccccccCChhHHHHHHHHHhcCCC-cEEEEEec
Q 024647 107 AQAMHWFDLPQFYNQVKWVLKKPN-GVIATWCY 138 (265)
Q Consensus 107 ~~~~~~~~~~~~l~~~~~~Lk~pg-G~l~~~~~ 138 (265)
.. .....+.++.+.|+ ++ |.++....
T Consensus 261 ~~-----g~~~~~~~~~~~l~-~~~G~~v~~g~ 287 (365)
T cd08277 261 CT-----GNADLMNEALESTK-LGWGVSVVVGV 287 (365)
T ss_pred CC-----CChHHHHHHHHhcc-cCCCEEEEEcC
Confidence 42 22457788899998 75 99887654
No 352
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=90.71 E-value=3.9 Score=35.49 Aligned_cols=94 Identities=14% Similarity=0.033 Sum_probs=58.7
Q ss_pred CeEEEEcC--CcchhHHHHHhc-CC-cEEEEcCCHHHHHHHHc-CCCceEEecCCccchhhhhhccCCCCceeEEEeccc
Q 024647 35 ELAWDVGT--GSGQAAASLSGI-FE-NVIGTETSPKQIEFATK-LPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQA 109 (265)
Q Consensus 35 ~~vlDvGc--G~G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~ 109 (265)
++||-.|+ |.|..+..+++. +. +|++++.+++..+.+++ +.--......-......+..+ .++.+|+|+....
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~--~~~gvd~vid~~g 233 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGFDAAINYKTDNVAERLREL--CPEGVDVYFDNVG 233 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCCcEEEECCCCCHHHHHHHH--CCCCceEEEECCC
Confidence 78888886 357788777775 55 69999999988887754 322122221111011122222 2256999986422
Q ss_pred cccCChhHHHHHHHHHhcCCCcEEEEEe
Q 024647 110 MHWFDLPQFYNQVKWVLKKPNGVIATWC 137 (265)
Q Consensus 110 ~~~~~~~~~l~~~~~~Lk~pgG~l~~~~ 137 (265)
...+.++.+.|+ ++|+++...
T Consensus 234 ------~~~~~~~~~~l~-~~G~iv~~G 254 (345)
T cd08293 234 ------GEISDTVISQMN-ENSHIILCG 254 (345)
T ss_pred ------cHHHHHHHHHhc-cCCEEEEEe
Confidence 124688899999 999998754
No 353
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=90.67 E-value=3.7 Score=35.38 Aligned_cols=90 Identities=13% Similarity=0.112 Sum_probs=54.0
Q ss_pred cCCc-chhHHHHHhc-CCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEeccccccCChhHH
Q 024647 41 GTGS-GQAAASLSGI-FENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWFDLPQF 118 (265)
Q Consensus 41 GcG~-G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~~~~~~ 118 (265)
|+|. |..+..+++. +.++++++.++...+.++++................+... .....+|+++.... ...
T Consensus 152 g~g~vG~~a~q~a~~~G~~vi~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~v~~~-~~~~~~d~vid~~g------~~~ 224 (324)
T cd08291 152 AASALGRMLVRLCKADGIKVINIVRRKEQVDLLKKIGAEYVLNSSDPDFLEDLKEL-IAKLNATIFFDAVG------GGL 224 (324)
T ss_pred CccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCcEEEECCCccHHHHHHHH-hCCCCCcEEEECCC------cHH
Confidence 5554 7777777664 5689999999998888887532223322111011122222 23346899986422 233
Q ss_pred HHHHHHHhcCCCcEEEEEec
Q 024647 119 YNQVKWVLKKPNGVIATWCY 138 (265)
Q Consensus 119 l~~~~~~Lk~pgG~l~~~~~ 138 (265)
.....+.|+ ++|+++....
T Consensus 225 ~~~~~~~l~-~~G~~v~~g~ 243 (324)
T cd08291 225 TGQILLAMP-YGSTLYVYGY 243 (324)
T ss_pred HHHHHHhhC-CCCEEEEEEe
Confidence 456688899 8999987553
No 354
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=90.66 E-value=2.9 Score=35.04 Aligned_cols=92 Identities=21% Similarity=0.189 Sum_probs=60.0
Q ss_pred CCCCeEEEEcCCc-chhHHHHHhc-CCc-EEEEcCCHHHHHHHHcCC-CceEEecCCccchhhhhhccCCCCceeEEEec
Q 024647 32 TNHELAWDVGTGS-GQAAASLSGI-FEN-VIGTETSPKQIEFATKLP-NIRYELTSPAMSIAELEQNVAAQSTVDLVTIA 107 (265)
Q Consensus 32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~~-v~~vD~s~~~~~~a~~~~-~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~ 107 (265)
.++.++|-.|||. |..+..+++. +.+ |++++.+++.++.+++.. .-.... .. +.. .....+|+|+..
T Consensus 96 ~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~g~~~~~~~-------~~-~~~-~~~~~~d~vl~~ 166 (277)
T cd08255 96 RLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEALGPADPVAA-------DT-ADE-IGGRGADVVIEA 166 (277)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHcCCCccccc-------cc-hhh-hcCCCCCEEEEc
Confidence 4667788888876 7777777664 456 999999999888777642 001111 00 011 134468988853
Q ss_pred cccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647 108 QAMHWFDLPQFYNQVKWVLKKPNGVIATWCY 138 (265)
Q Consensus 108 ~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~ 138 (265)
. .....+....+.|+ ++|.++....
T Consensus 167 ~-----~~~~~~~~~~~~l~-~~g~~~~~g~ 191 (277)
T cd08255 167 S-----GSPSALETALRLLR-DRGRVVLVGW 191 (277)
T ss_pred c-----CChHHHHHHHHHhc-CCcEEEEEec
Confidence 1 22457888899999 9999987544
No 355
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=90.58 E-value=3.5 Score=35.50 Aligned_cols=94 Identities=17% Similarity=0.086 Sum_probs=59.8
Q ss_pred CCCCeEEEEcCC-cchhHHHHHhc-CCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEeccc
Q 024647 32 TNHELAWDVGTG-SGQAAASLSGI-FENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQA 109 (265)
Q Consensus 32 ~~~~~vlDvGcG-~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~ 109 (265)
.++.+||-.||| .|..+..+++. +.+|++++.++..++.+++............ ..... ..+.+|+++...
T Consensus 161 ~~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~---~~~~~d~vi~~~- 233 (330)
T cd08245 161 RPGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARKLGADEVVDSGAE---LDEQA---AAGGADVILVTV- 233 (330)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCcEEeccCCc---chHHh---ccCCCCEEEECC-
Confidence 456788888987 47776666665 5689999999999888765321111111100 01111 124689888542
Q ss_pred cccCChhHHHHHHHHHhcCCCcEEEEEe
Q 024647 110 MHWFDLPQFYNQVKWVLKKPNGVIATWC 137 (265)
Q Consensus 110 ~~~~~~~~~l~~~~~~Lk~pgG~l~~~~ 137 (265)
.....+..+.+.|+ ++|.++...
T Consensus 234 ----~~~~~~~~~~~~l~-~~G~~i~~~ 256 (330)
T cd08245 234 ----VSGAAAEAALGGLR-RGGRIVLVG 256 (330)
T ss_pred ----CcHHHHHHHHHhcc-cCCEEEEEC
Confidence 22457888899999 999988654
No 356
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=90.57 E-value=0.82 Score=40.18 Aligned_cols=97 Identities=14% Similarity=0.212 Sum_probs=66.6
Q ss_pred CCeEEEEcCCcchhHHHHHhcCC--cEEEEcCCHHHHHHHHcCCCceEE-ecCCccchhhhhhccC-CCCceeEEEeccc
Q 024647 34 HELAWDVGTGSGQAAASLSGIFE--NVIGTETSPKQIEFATKLPNIRYE-LTSPAMSIAELEQNVA-AQSTVDLVTIAQA 109 (265)
Q Consensus 34 ~~~vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~~~d~~~~~~-~~~~~Dlv~~~~~ 109 (265)
..+|+|.=+|||.=+..++.... +++.-|+||..++..+. |+... ..+..+.+.|+..+-. ....||+|=..
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~--Nv~~N~~~~~~v~n~DAN~lm~~~~~~fd~IDiD-- 128 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKE--NVRLNSGEDAEVINKDANALLHELHRAFDVIDID-- 128 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHH--HHHhcCcccceeecchHHHHHHhcCCCccEEecC--
Confidence 57899999999998888876543 69999999999999885 22222 2233333345444321 12567766532
Q ss_pred cccC-ChhHHHHHHHHHhcCCCcEEEEEe
Q 024647 110 MHWF-DLPQFYNQVKWVLKKPNGVIATWC 137 (265)
Q Consensus 110 ~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~ 137 (265)
-+ .|..+++.+.+.++ .||.+.+..
T Consensus 129 --PFGSPaPFlDaA~~s~~-~~G~l~vTA 154 (380)
T COG1867 129 --PFGSPAPFLDAALRSVR-RGGLLCVTA 154 (380)
T ss_pred --CCCCCchHHHHHHHHhh-cCCEEEEEe
Confidence 12 46689999999999 899998743
No 357
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=90.48 E-value=3 Score=36.13 Aligned_cols=96 Identities=13% Similarity=0.102 Sum_probs=60.5
Q ss_pred CCCCeEEEEcCCc-chhHHHHHhc-CCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhh-hccCCCCceeEEEecc
Q 024647 32 TNHELAWDVGTGS-GQAAASLSGI-FENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELE-QNVAAQSTVDLVTIAQ 108 (265)
Q Consensus 32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~~Dlv~~~~ 108 (265)
.++.+||-.|||. |..+..+++. +.++++++.++..++.++++. +.......+ .+.. .+. ....+|+++..
T Consensus 162 ~~~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~g-~~~~i~~~~---~~~~~~~~-~~~~~d~vi~~- 235 (333)
T cd08296 162 KPGDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGSDKADLARKLG-AHHYIDTSK---EDVAEALQ-ELGGAKLILAT- 235 (333)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcC-CcEEecCCC---ccHHHHHH-hcCCCCEEEEC-
Confidence 4567888889764 6666666664 558999999988888887643 222211110 1111 111 11358888853
Q ss_pred ccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647 109 AMHWFDLPQFYNQVKWVLKKPNGVIATWCY 138 (265)
Q Consensus 109 ~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~ 138 (265)
......+..+.+.|+ ++|+++....
T Consensus 236 ----~g~~~~~~~~~~~l~-~~G~~v~~g~ 260 (333)
T cd08296 236 ----APNAKAISALVGGLA-PRGKLLILGA 260 (333)
T ss_pred ----CCchHHHHHHHHHcc-cCCEEEEEec
Confidence 112467888999999 9999987554
No 358
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=90.20 E-value=2.9 Score=36.86 Aligned_cols=96 Identities=17% Similarity=0.094 Sum_probs=57.1
Q ss_pred CCCCeEEEEcCCc-chhHHHHHhc-CCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEeccc
Q 024647 32 TNHELAWDVGTGS-GQAAASLSGI-FENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQA 109 (265)
Q Consensus 32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~ 109 (265)
.++.+||-.|+|. |..+..+++. +.++++++.++.....+.+.-+......... ...+... ...+|+|+-..
T Consensus 179 ~~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~~~Ga~~~i~~~~--~~~~~~~---~~~~D~vid~~- 252 (357)
T PLN02514 179 QSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEALEHLGADDYLVSSD--AAEMQEA---ADSLDYIIDTV- 252 (357)
T ss_pred CCCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhcCCcEEecCCC--hHHHHHh---cCCCcEEEECC-
Confidence 3567788788875 7777777765 4578888888876655432112221111110 0112222 12488888542
Q ss_pred cccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647 110 MHWFDLPQFYNQVKWVLKKPNGVIATWCY 138 (265)
Q Consensus 110 ~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~ 138 (265)
.....+..+.+.|+ ++|+++....
T Consensus 253 ----g~~~~~~~~~~~l~-~~G~iv~~G~ 276 (357)
T PLN02514 253 ----PVFHPLEPYLSLLK-LDGKLILMGV 276 (357)
T ss_pred ----CchHHHHHHHHHhc-cCCEEEEECC
Confidence 22457888899999 9999987554
No 359
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=90.08 E-value=5 Score=35.71 Aligned_cols=101 Identities=20% Similarity=0.156 Sum_probs=61.7
Q ss_pred CCCCCeEEEEcCCc-chhHHHHHhc-CC-cEEEEcCCHHHHHHHHcCCCceEEecCCc----cchhhhhhccCCCCceeE
Q 024647 31 TTNHELAWDVGTGS-GQAAASLSGI-FE-NVIGTETSPKQIEFATKLPNIRYELTSPA----MSIAELEQNVAAQSTVDL 103 (265)
Q Consensus 31 ~~~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~----~~~~d~~~~~~~~~~~Dl 103 (265)
..++.+||-.|||. |..+..+++. +. +|++++.++...+.+++.. +......-. .....+..+ .....+|+
T Consensus 201 ~~~g~~VlV~g~g~vG~~ai~lA~~~G~~~vi~~~~~~~~~~~~~~~g-~~~~v~~~~~~~~~~~~~v~~~-~~g~gvDv 278 (384)
T cd08265 201 FRPGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEERRNLAKEMG-ADYVFNPTKMRDCLSGEKVMEV-TKGWGADI 278 (384)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC-CCEEEcccccccccHHHHHHHh-cCCCCCCE
Confidence 34567777778865 6666666654 45 6999999998777777642 222211100 000112223 23456999
Q ss_pred EEeccccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647 104 VTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCY 138 (265)
Q Consensus 104 v~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~ 138 (265)
|+.... +....+.++.+.|+ ++|+++....
T Consensus 279 vld~~g----~~~~~~~~~~~~l~-~~G~~v~~g~ 308 (384)
T cd08265 279 QVEAAG----APPATIPQMEKSIA-INGKIVYIGR 308 (384)
T ss_pred EEECCC----CcHHHHHHHHHHHH-cCCEEEEECC
Confidence 986422 33467889999999 9999987653
No 360
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=90.02 E-value=4.9 Score=34.88 Aligned_cols=100 Identities=18% Similarity=0.118 Sum_probs=60.7
Q ss_pred CCCeEEEEcCCc-chhHHHHHhc-CC-cEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEeccc
Q 024647 33 NHELAWDVGTGS-GQAAASLSGI-FE-NVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQA 109 (265)
Q Consensus 33 ~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~ 109 (265)
++++||-.|+|. |..+..+++. +. +|++++.++...+.++++..-.+....-......+..+ .....+|+|+...
T Consensus 163 ~g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~-~~~~~~d~v~d~~- 240 (341)
T PRK05396 163 VGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELARKMGATRAVNVAKEDLRDVMAEL-GMTEGFDVGLEMS- 240 (341)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCcEEecCccccHHHHHHHh-cCCCCCCEEEECC-
Confidence 556777788765 6677677765 44 58888988888777665422122211100000112222 2345689998632
Q ss_pred cccCChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647 110 MHWFDLPQFYNQVKWVLKKPNGVIATWCYT 139 (265)
Q Consensus 110 ~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~~ 139 (265)
.....+..+.+.|+ ++|.++.....
T Consensus 241 ----g~~~~~~~~~~~l~-~~G~~v~~g~~ 265 (341)
T PRK05396 241 ----GAPSAFRQMLDNMN-HGGRIAMLGIP 265 (341)
T ss_pred ----CCHHHHHHHHHHHh-cCCEEEEEecC
Confidence 22467888999999 99999876543
No 361
>PRK11524 putative methyltransferase; Provisional
Probab=89.70 E-value=0.37 Score=41.19 Aligned_cols=41 Identities=20% Similarity=0.296 Sum_probs=30.0
Q ss_pred CCCCceeEEEeccccc----cCC-------------hhHHHHHHHHHhcCCCcEEEEEe
Q 024647 96 AAQSTVDLVTIAQAMH----WFD-------------LPQFYNQVKWVLKKPNGVIATWC 137 (265)
Q Consensus 96 ~~~~~~Dlv~~~~~~~----~~~-------------~~~~l~~~~~~Lk~pgG~l~~~~ 137 (265)
++++++|+|+++-... +.+ ...++.++.++|| |||.+++..
T Consensus 23 l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK-~~G~i~i~~ 80 (284)
T PRK11524 23 IPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLK-KQGTMYIMN 80 (284)
T ss_pred cccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhC-CCcEEEEEc
Confidence 5678999999964321 100 1468899999999 999998754
No 362
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=89.64 E-value=8.4 Score=33.43 Aligned_cols=100 Identities=16% Similarity=0.137 Sum_probs=58.8
Q ss_pred CCCCeEEEEcCCc-chhHHHHHhc-CCc-EEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEecc
Q 024647 32 TNHELAWDVGTGS-GQAAASLSGI-FEN-VIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQ 108 (265)
Q Consensus 32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~ 108 (265)
.++.+||-.|+|. |..+..+++. +.+ |++++-++...+.++++.-..............+..+ .....+|+++..
T Consensus 160 ~~g~~vlI~~~g~vg~~a~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~l~~~-~~~~~~d~vld~- 237 (340)
T TIGR00692 160 ISGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRLELAKKMGATYVVNPFKEDVVKEVADL-TDGEGVDVFLEM- 237 (340)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCcEEEcccccCHHHHHHHh-cCCCCCCEEEEC-
Confidence 4556676677763 6666666654 555 8899888887777765422112211100000112222 234568999864
Q ss_pred ccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647 109 AMHWFDLPQFYNQVKWVLKKPNGVIATWCY 138 (265)
Q Consensus 109 ~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~ 138 (265)
......+.++.+.|+ ++|+++....
T Consensus 238 ----~g~~~~~~~~~~~l~-~~g~~v~~g~ 262 (340)
T TIGR00692 238 ----SGAPKALEQGLQAVT-PGGRVSLLGL 262 (340)
T ss_pred ----CCCHHHHHHHHHhhc-CCCEEEEEcc
Confidence 122457889999999 9999876543
No 363
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=89.51 E-value=5.9 Score=34.86 Aligned_cols=100 Identities=14% Similarity=0.120 Sum_probs=60.3
Q ss_pred CCCCeEEEEcCCc-chhHHHHHhc-CCc-EEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEecc
Q 024647 32 TNHELAWDVGTGS-GQAAASLSGI-FEN-VIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQ 108 (265)
Q Consensus 32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~ 108 (265)
.++.+||-.|+|. |..+..+++. +.+ |++++.++...+.++...-..+...........+..+ .+...+|+++...
T Consensus 181 ~~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~~~~~~g~~~vv~~~~~~~~~~l~~~-~~~~~vd~vld~~ 259 (363)
T cd08279 181 RPGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELARRFGATHTVNASEDDAVEAVRDL-TDGRGADYAFEAV 259 (363)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHhCCeEEeCCCCccHHHHHHHH-cCCCCCCEEEEcC
Confidence 4567787778763 6666666654 455 9999999988887765321112111110000112222 2345699888532
Q ss_pred ccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647 109 AMHWFDLPQFYNQVKWVLKKPNGVIATWCY 138 (265)
Q Consensus 109 ~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~ 138 (265)
.....+..+.+.|+ ++|+++....
T Consensus 260 -----~~~~~~~~~~~~l~-~~G~~v~~g~ 283 (363)
T cd08279 260 -----GRAATIRQALAMTR-KGGTAVVVGM 283 (363)
T ss_pred -----CChHHHHHHHHHhh-cCCeEEEEec
Confidence 22457889999999 9999987654
No 364
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=89.41 E-value=4.5 Score=34.70 Aligned_cols=88 Identities=18% Similarity=0.243 Sum_probs=58.3
Q ss_pred CCCCeEEEEcCCc-chhHHHHHh-cCCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEeccc
Q 024647 32 TNHELAWDVGTGS-GQAAASLSG-IFENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQA 109 (265)
Q Consensus 32 ~~~~~vlDvGcG~-G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~ 109 (265)
.++.+||-.|+|. |..+..+++ .+.++++++.+++..+.++++ ++...... ... ...+.+|+++..
T Consensus 154 ~~g~~vlV~g~g~vg~~~~q~a~~~G~~vi~~~~~~~~~~~~~~~-g~~~~~~~--------~~~-~~~~~~d~vid~-- 221 (319)
T cd08242 154 TPGDKVAVLGDGKLGLLIAQVLALTGPDVVLVGRHSEKLALARRL-GVETVLPD--------EAE-SEGGGFDVVVEA-- 221 (319)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHc-CCcEEeCc--------ccc-ccCCCCCEEEEC--
Confidence 4567888888754 555555554 466899999999999988763 33322211 111 244569999864
Q ss_pred cccCChhHHHHHHHHHhcCCCcEEEE
Q 024647 110 MHWFDLPQFYNQVKWVLKKPNGVIAT 135 (265)
Q Consensus 110 ~~~~~~~~~l~~~~~~Lk~pgG~l~~ 135 (265)
......+..+.+.|+ ++|.+++
T Consensus 222 ---~g~~~~~~~~~~~l~-~~g~~v~ 243 (319)
T cd08242 222 ---TGSPSGLELALRLVR-PRGTVVL 243 (319)
T ss_pred ---CCChHHHHHHHHHhh-cCCEEEE
Confidence 222457788889999 8999986
No 365
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=89.16 E-value=1.9 Score=37.91 Aligned_cols=41 Identities=17% Similarity=0.152 Sum_probs=32.4
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcC----------CcEEEEcCCHHHHHHHH
Q 024647 32 TNHELAWDVGTGSGQAAASLSGIF----------ENVIGTETSPKQIEFAT 72 (265)
Q Consensus 32 ~~~~~vlDvGcG~G~~~~~l~~~~----------~~v~~vD~s~~~~~~a~ 72 (265)
+.+-.++|+|.|+|.+..-+++.. .++..||+|++..+.-+
T Consensus 76 p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk 126 (370)
T COG1565 76 PAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQK 126 (370)
T ss_pred CCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHH
Confidence 345679999999999998876532 36999999999887544
No 366
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=89.14 E-value=5.7 Score=34.99 Aligned_cols=99 Identities=17% Similarity=0.198 Sum_probs=58.8
Q ss_pred CCCCeEEEEcCCc-chhHHHHHhc-CCc-EEEEcCCHHHHHHHHcCCCce-EEecCCccchhhhhhccCCCCceeEEEec
Q 024647 32 TNHELAWDVGTGS-GQAAASLSGI-FEN-VIGTETSPKQIEFATKLPNIR-YELTSPAMSIAELEQNVAAQSTVDLVTIA 107 (265)
Q Consensus 32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~~-v~~vD~s~~~~~~a~~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~ 107 (265)
.++.+||-.|+|. |..+..+++. +.+ +++++.++...+.+++.. +. +...........+... ..+..+|+|+..
T Consensus 186 ~~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~~~~~~g-~~~v~~~~~~~~~~~l~~~-~~~~~~d~vld~ 263 (367)
T cd08263 186 RPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKELG-ATHTVNAAKEDAVAAIREI-TGGRGVDVVVEA 263 (367)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhC-CceEecCCcccHHHHHHHH-hCCCCCCEEEEe
Confidence 3556777667653 6666666654 456 999999998888776532 22 2211110000112222 234569999864
Q ss_pred cccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647 108 QAMHWFDLPQFYNQVKWVLKKPNGVIATWCY 138 (265)
Q Consensus 108 ~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~ 138 (265)
......+.++.+.|+ ++|+++....
T Consensus 264 -----vg~~~~~~~~~~~l~-~~G~~v~~g~ 288 (367)
T cd08263 264 -----LGKPETFKLALDVVR-DGGRAVVVGL 288 (367)
T ss_pred -----CCCHHHHHHHHHHHh-cCCEEEEEcc
Confidence 211237888999999 9999987643
No 367
>PRK13699 putative methylase; Provisional
Probab=89.13 E-value=0.52 Score=38.96 Aligned_cols=42 Identities=17% Similarity=0.218 Sum_probs=30.0
Q ss_pred CCCCceeEEEeccccc-----cCC-----------hhHHHHHHHHHhcCCCcEEEEEec
Q 024647 96 AAQSTVDLVTIAQAMH-----WFD-----------LPQFYNQVKWVLKKPNGVIATWCY 138 (265)
Q Consensus 96 ~~~~~~Dlv~~~~~~~-----~~~-----------~~~~l~~~~~~Lk~pgG~l~~~~~ 138 (265)
++++++|+|+..-... ..+ ...++.++.|+|| |||.++++..
T Consensus 16 lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLK-pgg~l~if~~ 73 (227)
T PRK13699 16 FPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLK-KDALMVSFYG 73 (227)
T ss_pred CCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcC-CCCEEEEEec
Confidence 6888999999874221 000 1368899999999 9999887543
No 368
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=88.68 E-value=6.5 Score=34.27 Aligned_cols=96 Identities=17% Similarity=0.081 Sum_probs=58.9
Q ss_pred CCCeEEEEcCCc-chhHHHHHhc-CC-cEEEEcCCHHHHHHHHcCCCceEEecCCcc-chhhhhhccCCCCceeEEEecc
Q 024647 33 NHELAWDVGTGS-GQAAASLSGI-FE-NVIGTETSPKQIEFATKLPNIRYELTSPAM-SIAELEQNVAAQSTVDLVTIAQ 108 (265)
Q Consensus 33 ~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~-~~~d~~~~~~~~~~~Dlv~~~~ 108 (265)
++.+||-.|+|. |..+..+++. +. +|++++.++...+.+++.. +......-.. ....+... ... .+|+++...
T Consensus 175 ~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~-~~~-~~d~vid~~ 251 (350)
T cd08240 175 ADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAKAAG-ADVVVNGSDPDAAKRIIKA-AGG-GVDAVIDFV 251 (350)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhC-CcEEecCCCccHHHHHHHH-hCC-CCcEEEECC
Confidence 557788888764 6666666654 45 6899999998888876532 2222111000 00112222 122 689998642
Q ss_pred ccccCChhHHHHHHHHHhcCCCcEEEEEe
Q 024647 109 AMHWFDLPQFYNQVKWVLKKPNGVIATWC 137 (265)
Q Consensus 109 ~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~ 137 (265)
.....+..+.+.|+ ++|+++...
T Consensus 252 -----g~~~~~~~~~~~l~-~~g~~v~~g 274 (350)
T cd08240 252 -----NNSATASLAFDILA-KGGKLVLVG 274 (350)
T ss_pred -----CCHHHHHHHHHHhh-cCCeEEEEC
Confidence 22467899999999 999998654
No 369
>PRK10083 putative oxidoreductase; Provisional
Probab=88.61 E-value=6.7 Score=33.91 Aligned_cols=97 Identities=15% Similarity=0.191 Sum_probs=58.8
Q ss_pred CCCCeEEEEcCCc-chhHHHHHh-c-CCc-EEEEcCCHHHHHHHHcCCCceEEecCCccchhhh-hhccCCCCceeEEEe
Q 024647 32 TNHELAWDVGTGS-GQAAASLSG-I-FEN-VIGTETSPKQIEFATKLPNIRYELTSPAMSIAEL-EQNVAAQSTVDLVTI 106 (265)
Q Consensus 32 ~~~~~vlDvGcG~-G~~~~~l~~-~-~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~~Dlv~~ 106 (265)
.++.+||=.|||. |..+..+++ . +.+ ++++|.++...+.+++.. +......-. .++ +.+.-....+|+|+.
T Consensus 159 ~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~G-a~~~i~~~~---~~~~~~~~~~g~~~d~vid 234 (339)
T PRK10083 159 TEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKESG-ADWVINNAQ---EPLGEALEEKGIKPTLIID 234 (339)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHhC-CcEEecCcc---ccHHHHHhcCCCCCCEEEE
Confidence 4567888899775 666666776 3 654 888999999888877642 221111100 111 112111123567765
Q ss_pred ccccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647 107 AQAMHWFDLPQFYNQVKWVLKKPNGVIATWCY 138 (265)
Q Consensus 107 ~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~ 138 (265)
.. .....+.++.+.|+ ++|+++....
T Consensus 235 ~~-----g~~~~~~~~~~~l~-~~G~~v~~g~ 260 (339)
T PRK10083 235 AA-----CHPSILEEAVTLAS-PAARIVLMGF 260 (339)
T ss_pred CC-----CCHHHHHHHHHHhh-cCCEEEEEcc
Confidence 32 22357888899999 9999987654
No 370
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=88.60 E-value=1.3 Score=32.91 Aligned_cols=100 Identities=14% Similarity=0.126 Sum_probs=51.3
Q ss_pred HHHHHHHhhCCCCCeEEEEcCCc-chhHHHHHhcCCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccC-CCC
Q 024647 22 ELFKFITSKTTNHELAWDVGTGS-GQAAASLSGIFENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVA-AQS 99 (265)
Q Consensus 22 ~l~~~l~~~~~~~~~vlDvGcG~-G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-~~~ 99 (265)
++.+.+...... .+++|||-|. -..+..|.+++.+|+++|+.+. .+. .++++.. .|+-+-.+ --.
T Consensus 3 ~~a~~ia~~~~~-~kiVEVGiG~~~~vA~~L~~~G~dV~~tDi~~~---~a~--~g~~~v~-------DDif~P~l~iY~ 69 (127)
T PF03686_consen 3 DFAEYIARLNNY-GKIVEVGIGFNPEVAKKLKERGFDVIATDINPR---KAP--EGVNFVV-------DDIFNPNLEIYE 69 (127)
T ss_dssp HHHHHHHHHS-S-SEEEEET-TT--HHHHHHHHHS-EEEEE-SS-S---------STTEE----------SSS--HHHHT
T ss_pred hHHHHHHHhCCC-CcEEEECcCCCHHHHHHHHHcCCcEEEEECccc---ccc--cCcceee-------ecccCCCHHHhc
Confidence 445556544444 5899999997 4667778888999999999998 333 5677777 33321100 012
Q ss_pred ceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647 100 TVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCYT 139 (265)
Q Consensus 100 ~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~~ 139 (265)
..|+|.+--.= .+.+..+-++++.+ |.-+++...+
T Consensus 70 ~a~lIYSiRPP--~El~~~il~lA~~v---~adlii~pL~ 104 (127)
T PF03686_consen 70 GADLIYSIRPP--PELQPPILELAKKV---GADLIIRPLG 104 (127)
T ss_dssp TEEEEEEES----TTSHHHHHHHHHHH---T-EEEEE-BT
T ss_pred CCcEEEEeCCC--hHHhHHHHHHHHHh---CCCEEEECCC
Confidence 58898874210 03344555555543 4556665444
No 371
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=88.53 E-value=1.9 Score=36.67 Aligned_cols=84 Identities=21% Similarity=0.171 Sum_probs=52.2
Q ss_pred eEEEEcCCc--chhHHHHHhcCCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEeccccccC
Q 024647 36 LAWDVGTGS--GQAAASLSGIFENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWF 113 (265)
Q Consensus 36 ~vlDvGcG~--G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~ 113 (265)
+|.=||+|. |.++..|.+.+.+|+++|.++..++.+.....+.... .+.+. -...|+|+.+....
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~~~~~~-------~~~~~----~~~aDlVilavp~~-- 68 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIERGLVDEAS-------TDLSL----LKDCDLVILALPIG-- 68 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCccccc-------CCHhH----hcCCCEEEEcCCHH--
Confidence 466788886 4667777777789999999999888876532221111 11111 13579999764321
Q ss_pred ChhHHHHHHHHHhcCCCcEE
Q 024647 114 DLPQFYNQVKWVLKKPNGVI 133 (265)
Q Consensus 114 ~~~~~l~~~~~~Lk~pgG~l 133 (265)
...++++++...++ ++..+
T Consensus 69 ~~~~~~~~l~~~l~-~~~ii 87 (279)
T PRK07417 69 LLLPPSEQLIPALP-PEAIV 87 (279)
T ss_pred HHHHHHHHHHHhCC-CCcEE
Confidence 12346677777777 66444
No 372
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=88.28 E-value=7.6 Score=33.68 Aligned_cols=97 Identities=15% Similarity=0.111 Sum_probs=61.2
Q ss_pred CCCCeEEEEcC--CcchhHHHHHhc-CCcEEEEcCCHHHHHHHHc-CCCceEEecC-CccchhhhhhccCCCCceeEEEe
Q 024647 32 TNHELAWDVGT--GSGQAAASLSGI-FENVIGTETSPKQIEFATK-LPNIRYELTS-PAMSIAELEQNVAAQSTVDLVTI 106 (265)
Q Consensus 32 ~~~~~vlDvGc--G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~-~~~~~~~~~~-~~~~~~d~~~~~~~~~~~Dlv~~ 106 (265)
.++++||-.|+ |.|..+..+++. +.+|++++.++...+.+++ +.--...... .......+.... . +.+|+|+-
T Consensus 150 ~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~-~-~gvd~v~d 227 (338)
T cd08295 150 KKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNKLGFDDAFNYKEEPDLDAALKRYF-P-NGIDIYFD 227 (338)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCceeEEcCCcccHHHHHHHhC-C-CCcEEEEE
Confidence 56788998887 347777777764 5689999999988888775 3221222211 000011122221 2 56899986
Q ss_pred ccccccCChhHHHHHHHHHhcCCCcEEEEEe
Q 024647 107 AQAMHWFDLPQFYNQVKWVLKKPNGVIATWC 137 (265)
Q Consensus 107 ~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~ 137 (265)
... ...+.++.+.|+ ++|+++...
T Consensus 228 ~~g------~~~~~~~~~~l~-~~G~iv~~G 251 (338)
T cd08295 228 NVG------GKMLDAVLLNMN-LHGRIAACG 251 (338)
T ss_pred CCC------HHHHHHHHHHhc-cCcEEEEec
Confidence 422 257888999999 999998754
No 373
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=88.22 E-value=2.7 Score=36.33 Aligned_cols=94 Identities=18% Similarity=0.162 Sum_probs=66.3
Q ss_pred CCCeEEEEcCCc-chhHHHHHh-cCCcEEEEcCCHHHHHHHHcC--CCceEEecCCccchhhhhhccCCCCceeEEEecc
Q 024647 33 NHELAWDVGTGS-GQAAASLSG-IFENVIGTETSPKQIEFATKL--PNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQ 108 (265)
Q Consensus 33 ~~~~vlDvGcG~-G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~--~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~ 108 (265)
++.+|.-+|.|. |.-+..++- .+++|+.+|.|..-+.+.... ..+.....+. ..++.. -...|+++..-
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~----~~iee~---v~~aDlvIgaV 239 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTP----SNIEEA---VKKADLVIGAV 239 (371)
T ss_pred CCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCH----HHHHHH---hhhccEEEEEE
Confidence 346688899886 766666654 578999999999988888763 2344444333 333332 24689999876
Q ss_pred ccccC-ChhHHHHHHHHHhcCCCcEEE
Q 024647 109 AMHWF-DLPQFYNQVKWVLKKPNGVIA 134 (265)
Q Consensus 109 ~~~~~-~~~~~l~~~~~~Lk~pgG~l~ 134 (265)
.+.=- +|.-+.+++...+| ||+.++
T Consensus 240 LIpgakaPkLvt~e~vk~Mk-pGsViv 265 (371)
T COG0686 240 LIPGAKAPKLVTREMVKQMK-PGSVIV 265 (371)
T ss_pred EecCCCCceehhHHHHHhcC-CCcEEE
Confidence 55544 56678999999999 899887
No 374
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=88.19 E-value=0.46 Score=42.36 Aligned_cols=93 Identities=15% Similarity=0.241 Sum_probs=62.0
Q ss_pred CCCeEEEEcCCcchhHHHHHhcC---CcEEEEcCCHHHHHHHHcC------C--CceEEecCCccchhhhhhcc-CCCCc
Q 024647 33 NHELAWDVGTGSGQAAASLSGIF---ENVIGTETSPKQIEFATKL------P--NIRYELTSPAMSIAELEQNV-AAQST 100 (265)
Q Consensus 33 ~~~~vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~------~--~~~~~~~~~~~~~~d~~~~~-~~~~~ 100 (265)
.+-++||.=+|+|.=+...+... .+|++-|+|+..++..++. . .+.... .|+..+- .....
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~-------~DAn~ll~~~~~~ 121 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSN-------MDANVLLYSRQER 121 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEE-------S-HHHHHCHSTT-
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEeh-------hhHHHHhhhcccc
Confidence 34589999999998888887663 4699999999999987752 1 133333 4554432 25678
Q ss_pred eeEEEeccccccC-ChhHHHHHHHHHhcCCCcEEEEEe
Q 024647 101 VDLVTIAQAMHWF-DLPQFYNQVKWVLKKPNGVIATWC 137 (265)
Q Consensus 101 ~Dlv~~~~~~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~ 137 (265)
||+|=..- + .+..+++.+.+.++ .||.|.+..
T Consensus 122 fD~IDlDP----fGSp~pfldsA~~~v~-~gGll~vTa 154 (377)
T PF02005_consen 122 FDVIDLDP----FGSPAPFLDSALQAVK-DGGLLCVTA 154 (377)
T ss_dssp EEEEEE------SS--HHHHHHHHHHEE-EEEEEEEEE
T ss_pred CCEEEeCC----CCCccHhHHHHHHHhh-cCCEEEEec
Confidence 99987541 2 45689999999999 899988743
No 375
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=87.93 E-value=1.2 Score=42.85 Aligned_cols=106 Identities=15% Similarity=0.213 Sum_probs=59.9
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcC-------C-------cEEEEcCCH---HHHHHHHc-------------------CC
Q 024647 32 TNHELAWDVGTGSGQAAASLSGIF-------E-------NVIGTETSP---KQIEFATK-------------------LP 75 (265)
Q Consensus 32 ~~~~~vlDvGcG~G~~~~~l~~~~-------~-------~v~~vD~s~---~~~~~a~~-------------------~~ 75 (265)
.+.-+|+|+|=|+|.......+.. + +++++|..| +.+..+.. .+
T Consensus 56 ~~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 135 (662)
T PRK01747 56 RRRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLP 135 (662)
T ss_pred CCcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCC
Confidence 344789999999997666544221 1 588999644 32322211 01
Q ss_pred Cc---eEEec--CCccchhhhhhc-cCCCCceeEEEeccccccCCh----hHHHHHHHHHhcCCCcEEEEEec
Q 024647 76 NI---RYELT--SPAMSIAELEQN-VAAQSTVDLVTIAQAMHWFDL----PQFYNQVKWVLKKPNGVIATWCY 138 (265)
Q Consensus 76 ~~---~~~~~--~~~~~~~d~~~~-~~~~~~~Dlv~~~~~~~~~~~----~~~l~~~~~~Lk~pgG~l~~~~~ 138 (265)
+. .+... ...+..+|+.+. +.-...+|+++...--.--+| +.+++++.++++ |||+++.++.
T Consensus 136 g~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~-~~~~~~t~t~ 207 (662)
T PRK01747 136 GCHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLAR-PGATLATFTS 207 (662)
T ss_pred CceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhC-CCCEEEEeeh
Confidence 11 11111 122334665443 212246888886532111122 479999999999 9999997654
No 376
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=87.93 E-value=1.1 Score=38.95 Aligned_cols=65 Identities=11% Similarity=0.057 Sum_probs=45.9
Q ss_pred EEEEcCCcchhHHHHHhcCCc-EEEEcCCHHHHHHHHc-CCCceEEecCCccchhhhhhccC-CCCceeEEEeccc
Q 024647 37 AWDVGTGSGQAAASLSGIFEN-VIGTETSPKQIEFATK-LPNIRYELTSPAMSIAELEQNVA-AQSTVDLVTIAQA 109 (265)
Q Consensus 37 vlDvGcG~G~~~~~l~~~~~~-v~~vD~s~~~~~~a~~-~~~~~~~~~~~~~~~~d~~~~~~-~~~~~Dlv~~~~~ 109 (265)
|+|+-||.|.++..+.+.+.+ +.++|+++..++.-+. .++ .... +|+.++.. .-..+|+++....
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~~-~~~~-------~Di~~~~~~~~~~~dvl~gg~P 68 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFGN-KVPF-------GDITKISPSDIPDFDILLGGFP 68 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCCC-CCCc-------cChhhhhhhhCCCcCEEEecCC
Confidence 589999999999999988877 5689999999887664 333 2233 44444431 1225899998653
No 377
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=87.56 E-value=3.7 Score=32.87 Aligned_cols=89 Identities=13% Similarity=0.075 Sum_probs=64.4
Q ss_pred CCCCeEEEEcCC-cchhHHHHHhcCCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEecccc
Q 024647 32 TNHELAWDVGTG-SGQAAASLSGIFENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAM 110 (265)
Q Consensus 32 ~~~~~vlDvGcG-~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~ 110 (265)
..+..+|-+|.= +|.++..+...-.+|+.+|+.|.|..... +++.|... +..+.+.+|+|+--..+
T Consensus 43 ~E~~~vli~G~YltG~~~a~~Ls~~~~vtv~Di~p~~r~~lp--~~v~Fr~~-----------~~~~~G~~DlivDlTGl 109 (254)
T COG4017 43 EEFKEVLIFGVYLTGNYTAQMLSKADKVTVVDIHPFMRGFLP--NNVKFRNL-----------LKFIRGEVDLIVDLTGL 109 (254)
T ss_pred cCcceEEEEEeeehhHHHHHHhcccceEEEecCCHHHHhcCC--CCccHhhh-----------cCCCCCceeEEEecccc
Confidence 456789999886 69999998888889999999999977776 67777652 33567889999987665
Q ss_pred ccCChhHHHHHHHHHhcCCCcEEEEEecCC
Q 024647 111 HWFDLPQFYNQVKWVLKKPNGVIATWCYTV 140 (265)
Q Consensus 111 ~~~~~~~~l~~~~~~Lk~pgG~l~~~~~~~ 140 (265)
-=..|+ ..+-+. | +.|++.++..
T Consensus 110 GG~~Pe-----~L~~fn-p-~vfiVEdP~g 132 (254)
T COG4017 110 GGIEPE-----FLAKFN-P-KVFIVEDPKG 132 (254)
T ss_pred CCCCHH-----HHhccC-C-ceEEEECCCC
Confidence 544443 334455 3 5666666653
No 378
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=87.48 E-value=1.3 Score=37.35 Aligned_cols=45 Identities=9% Similarity=0.199 Sum_probs=33.9
Q ss_pred HHHHHHHhhC--CCCCeEEEEcCCcchhHHHHHhcC-------CcEEEEcCCHH
Q 024647 22 ELFKFITSKT--TNHELAWDVGTGSGQAAASLSGIF-------ENVIGTETSPK 66 (265)
Q Consensus 22 ~l~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~-------~~v~~vD~s~~ 66 (265)
.++..+.... .++..++|.|||.|.++..+++.. ..++.||-...
T Consensus 5 Sli~~l~~~~ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~ 58 (259)
T PF05206_consen 5 SLIGNLEQRGLLNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASN 58 (259)
T ss_pred HHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcc
Confidence 4555555442 466789999999999999998754 36899998554
No 379
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=87.43 E-value=9.6 Score=32.96 Aligned_cols=99 Identities=19% Similarity=0.178 Sum_probs=59.2
Q ss_pred CCCCeEEEEcCC-cchhHHHHHhc-CCc-EEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEecc
Q 024647 32 TNHELAWDVGTG-SGQAAASLSGI-FEN-VIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQ 108 (265)
Q Consensus 32 ~~~~~vlDvGcG-~G~~~~~l~~~-~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~ 108 (265)
.++.+||-.|+| .|..+..+++. +.+ +++++.++...+.++......+....-......+... .....+|+|+...
T Consensus 164 ~~g~~VlV~g~g~vg~~~~~la~~~g~~~v~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~-~~~~~vd~vld~~ 242 (343)
T cd08235 164 KPGDTVLVIGAGPIGLLHAMLAKASGARKVIVSDLNEFRLEFAKKLGADYTIDAAEEDLVEKVREL-TDGRGADVVIVAT 242 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCcEEecCCccCHHHHHHHH-hCCcCCCEEEECC
Confidence 456778777876 36666666654 557 8899999988887765322122211110000112222 2344589988532
Q ss_pred ccccCChhHHHHHHHHHhcCCCcEEEEEe
Q 024647 109 AMHWFDLPQFYNQVKWVLKKPNGVIATWC 137 (265)
Q Consensus 109 ~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~ 137 (265)
.....+..+.+.|+ ++|+++...
T Consensus 243 -----~~~~~~~~~~~~l~-~~g~~v~~~ 265 (343)
T cd08235 243 -----GSPEAQAQALELVR-KGGRILFFG 265 (343)
T ss_pred -----CChHHHHHHHHHhh-cCCEEEEEe
Confidence 22357888899999 899998654
No 380
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=87.28 E-value=0.49 Score=40.88 Aligned_cols=66 Identities=18% Similarity=0.153 Sum_probs=45.2
Q ss_pred eEEEEcCCcchhHHHHHhcCCc-EEEEcCCHHHHHHHHc-CCCceEEecCCccchhhhhhcc---CCCCceeEEEecccc
Q 024647 36 LAWDVGTGSGQAAASLSGIFEN-VIGTETSPKQIEFATK-LPNIRYELTSPAMSIAELEQNV---AAQSTVDLVTIAQAM 110 (265)
Q Consensus 36 ~vlDvGcG~G~~~~~l~~~~~~-v~~vD~s~~~~~~a~~-~~~~~~~~~~~~~~~~d~~~~~---~~~~~~Dlv~~~~~~ 110 (265)
+++|+=||-|.++..+.+.+.+ +.++|+++..++.-+. .+ .... +|+.++. ++. .+|+++....+
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~--~~~~-------~Di~~~~~~~l~~-~~D~l~ggpPC 71 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP--EVIC-------GDITEIDPSDLPK-DVDLLIGGPPC 71 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT--EEEE-------SHGGGCHHHHHHH-T-SEEEEE---
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc--cccc-------ccccccccccccc-cceEEEeccCC
Confidence 6899999999999999998864 7899999999887664 23 4455 3433332 333 59999987644
Q ss_pred c
Q 024647 111 H 111 (265)
Q Consensus 111 ~ 111 (265)
.
T Consensus 72 Q 72 (335)
T PF00145_consen 72 Q 72 (335)
T ss_dssp T
T ss_pred c
Confidence 3
No 381
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=87.08 E-value=5.9 Score=35.72 Aligned_cols=91 Identities=19% Similarity=0.093 Sum_probs=58.2
Q ss_pred CCCCeEEEEcCCc-chhHHHHHh-cCCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEeccc
Q 024647 32 TNHELAWDVGTGS-GQAAASLSG-IFENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQA 109 (265)
Q Consensus 32 ~~~~~vlDvGcG~-G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~ 109 (265)
..+++|+-+|+|. |......++ .+.+|+++|.++.....+.. .+.... + +++. . ...|+|+...
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~-~G~~v~--~-------leea-l--~~aDVVItaT- 258 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAM-DGFRVM--T-------MEEA-A--KIGDIFITAT- 258 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHh-cCCEeC--C-------HHHH-H--hcCCEEEECC-
Confidence 4678999999997 655555554 46789999999876555553 232221 1 1222 1 2469988753
Q ss_pred cccCChhHHHH-HHHHHhcCCCcEEEEEecCCC
Q 024647 110 MHWFDLPQFYN-QVKWVLKKPNGVIATWCYTVP 141 (265)
Q Consensus 110 ~~~~~~~~~l~-~~~~~Lk~pgG~l~~~~~~~~ 141 (265)
.....+. +....+| +|++++.....+.
T Consensus 259 ----G~~~vI~~~~~~~mK-~GailiN~G~~~~ 286 (406)
T TIGR00936 259 ----GNKDVIRGEHFENMK-DGAIVANIGHFDV 286 (406)
T ss_pred ----CCHHHHHHHHHhcCC-CCcEEEEECCCCc
Confidence 2345555 4788899 8999887665543
No 382
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=86.91 E-value=11 Score=32.63 Aligned_cols=98 Identities=13% Similarity=0.110 Sum_probs=59.0
Q ss_pred CCCCeEEEEcCCc-chhHHHHHhc-CCc-EEEEcCCHHHHHHHHcCCCceEEecCCc-cchhhhhhccCCCCceeEEEec
Q 024647 32 TNHELAWDVGTGS-GQAAASLSGI-FEN-VIGTETSPKQIEFATKLPNIRYELTSPA-MSIAELEQNVAAQSTVDLVTIA 107 (265)
Q Consensus 32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~-~~~~d~~~~~~~~~~~Dlv~~~ 107 (265)
.++.+||=.|||. |..+..+++. +.+ +++++.++.-.+.+++.. +......-. .....+... .+...+|+++..
T Consensus 167 ~~g~~vlI~g~g~vg~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g-a~~v~~~~~~~~~~~i~~~-~~~~~~d~il~~ 244 (345)
T cd08287 167 RPGSTVVVVGDGAVGLCAVLAAKRLGAERIIAMSRHEDRQALAREFG-ATDIVAERGEEAVARVREL-TGGVGADAVLEC 244 (345)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcC-CceEecCCcccHHHHHHHh-cCCCCCCEEEEC
Confidence 4556666688875 6666667665 444 899999887777666542 222111100 000122222 234468888854
Q ss_pred cccccCChhHHHHHHHHHhcCCCcEEEEEe
Q 024647 108 QAMHWFDLPQFYNQVKWVLKKPNGVIATWC 137 (265)
Q Consensus 108 ~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~ 137 (265)
......+..+.+.|+ ++|.++...
T Consensus 245 -----~g~~~~~~~~~~~l~-~~g~~v~~g 268 (345)
T cd08287 245 -----VGTQESMEQAIAIAR-PGGRVGYVG 268 (345)
T ss_pred -----CCCHHHHHHHHHhhc-cCCEEEEec
Confidence 223568899999999 999988654
No 383
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=86.88 E-value=13 Score=31.48 Aligned_cols=100 Identities=14% Similarity=0.163 Sum_probs=58.4
Q ss_pred CCCCeEEEEcCCc-chhHHHHHhc-CCc-EEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEecc
Q 024647 32 TNHELAWDVGTGS-GQAAASLSGI-FEN-VIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQ 108 (265)
Q Consensus 32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~ 108 (265)
.++.+||-.|+|. |..+..+++. +.+ ++++..+++..+.+++..-..............+..+ .+...+|+++..
T Consensus 128 ~~~~~vlI~g~g~vg~~~~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~-~~~~~vd~vld~- 205 (312)
T cd08269 128 RAGKTVAVIGAGFIGLLFLQLAAAAGARRVIAIDRRPARLALARELGATEVVTDDSEAIVERVREL-TGGAGADVVIEA- 205 (312)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCceEecCCCcCHHHHHHHH-cCCCCCCEEEEC-
Confidence 4567777777643 5555555554 557 9999988887776665321111211110001122222 234568999864
Q ss_pred ccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647 109 AMHWFDLPQFYNQVKWVLKKPNGVIATWCY 138 (265)
Q Consensus 109 ~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~ 138 (265)
......+..+.+.|+ ++|.++....
T Consensus 206 ----~g~~~~~~~~~~~l~-~~g~~~~~g~ 230 (312)
T cd08269 206 ----VGHQWPLDLAGELVA-ERGRLVIFGY 230 (312)
T ss_pred ----CCCHHHHHHHHHHhc-cCCEEEEEcc
Confidence 222457888899999 9999987554
No 384
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=86.67 E-value=4 Score=36.51 Aligned_cols=69 Identities=22% Similarity=0.185 Sum_probs=44.7
Q ss_pred CeEEEEcCCc-chhHHH-HHhcC-CcEEEEcCCHHHHHHHHcC--CCceEEecCCccchhhhhhccCCCCceeEEEec
Q 024647 35 ELAWDVGTGS-GQAAAS-LSGIF-ENVIGTETSPKQIEFATKL--PNIRYELTSPAMSIAELEQNVAAQSTVDLVTIA 107 (265)
Q Consensus 35 ~~vlDvGcG~-G~~~~~-l~~~~-~~v~~vD~s~~~~~~a~~~--~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~ 107 (265)
++||-||||. |..... |++++ .+|+..|.|.+.++.+... .+++..+.++ .|.+.+..--..+|+|+..
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~----~d~~al~~li~~~d~VIn~ 75 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDA----ADVDALVALIKDFDLVINA 75 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecc----cChHHHHHHHhcCCEEEEe
Confidence 4689999975 544444 35556 6899999999988887653 4677777665 3332221111235888864
No 385
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=86.58 E-value=9.6 Score=33.06 Aligned_cols=99 Identities=16% Similarity=0.140 Sum_probs=60.0
Q ss_pred CCCCeEEEEcCCc-chhHHHHHhc-CCcEEEEcCCHHHHHHHHcCCCceEEecCC-ccchhhhhhccCCCCceeEEEecc
Q 024647 32 TNHELAWDVGTGS-GQAAASLSGI-FENVIGTETSPKQIEFATKLPNIRYELTSP-AMSIAELEQNVAAQSTVDLVTIAQ 108 (265)
Q Consensus 32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~-~~~~~d~~~~~~~~~~~Dlv~~~~ 108 (265)
.++.+||-.|||. |..+..+++. +.++++++.+++..+.+++..-..+..... ......+..+ ..+ .+|+++..
T Consensus 164 ~~~~~vlV~g~g~vg~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~-~~~-~~d~vi~~- 240 (345)
T cd08260 164 KPGEWVAVHGCGGVGLSAVMIASALGARVIAVDIDDDKLELARELGAVATVNASEVEDVAAAVRDL-TGG-GAHVSVDA- 240 (345)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHhCCCEEEccccchhHHHHHHHH-hCC-CCCEEEEc-
Confidence 4567888888754 5666666654 558999999998888876532112222110 0000112222 123 69998864
Q ss_pred ccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647 109 AMHWFDLPQFYNQVKWVLKKPNGVIATWCY 138 (265)
Q Consensus 109 ~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~ 138 (265)
......+..+.+.|+ ++|.++....
T Consensus 241 ----~g~~~~~~~~~~~l~-~~g~~i~~g~ 265 (345)
T cd08260 241 ----LGIPETCRNSVASLR-KRGRHVQVGL 265 (345)
T ss_pred ----CCCHHHHHHHHHHhh-cCCEEEEeCC
Confidence 222457888999999 9999886543
No 386
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=86.39 E-value=11 Score=32.47 Aligned_cols=97 Identities=11% Similarity=0.145 Sum_probs=59.8
Q ss_pred CCCCeEEEEcCCc-chhHHHHHhc--CCcEEEEcCCHHHHHHHHcCCCceEEecCCc--cchhhhhhccCCCCceeEEEe
Q 024647 32 TNHELAWDVGTGS-GQAAASLSGI--FENVIGTETSPKQIEFATKLPNIRYELTSPA--MSIAELEQNVAAQSTVDLVTI 106 (265)
Q Consensus 32 ~~~~~vlDvGcG~-G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~--~~~~d~~~~~~~~~~~Dlv~~ 106 (265)
.++.+||-.|||. |..+..+++. +.++++++.+++..+.+++.. +........ .....+... . +.+|.++.
T Consensus 161 ~~g~~vlV~g~g~vG~~~~~la~~~~g~~v~~~~~~~~~~~~~~~~g-~~~v~~~~~~~~~~~~v~~~--~-~~~d~vi~ 236 (338)
T PRK09422 161 KPGQWIAIYGAGGLGNLALQYAKNVFNAKVIAVDINDDKLALAKEVG-ADLTINSKRVEDVAKIIQEK--T-GGAHAAVV 236 (338)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHcC-CcEEecccccccHHHHHHHh--c-CCCcEEEE
Confidence 5667888889764 6777777773 678999999999999887643 222221100 000111112 1 24774443
Q ss_pred ccccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647 107 AQAMHWFDLPQFYNQVKWVLKKPNGVIATWCY 138 (265)
Q Consensus 107 ~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~ 138 (265)
.. . ....+..+.+.|+ ++|.++....
T Consensus 237 ~~----~-~~~~~~~~~~~l~-~~G~~v~~g~ 262 (338)
T PRK09422 237 TA----V-AKAAFNQAVDAVR-AGGRVVAVGL 262 (338)
T ss_pred eC----C-CHHHHHHHHHhcc-CCCEEEEEee
Confidence 21 1 2457899999999 9999987543
No 387
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=86.28 E-value=5.9 Score=35.97 Aligned_cols=91 Identities=21% Similarity=0.152 Sum_probs=58.0
Q ss_pred CCCeEEEEcCCc-chhHHHHH-hcCCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEecccc
Q 024647 33 NHELAWDVGTGS-GQAAASLS-GIFENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAM 110 (265)
Q Consensus 33 ~~~~vlDvGcG~-G~~~~~l~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~ 110 (265)
.+.+|+-+|+|. |......+ ..+.+|+.+|+++.....+... +.... ++++. . ..+|+|+...
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~-G~~v~---------~l~ea-l--~~aDVVI~aT-- 275 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMD-GFRVM---------TMEEA-A--ELGDIFVTAT-- 275 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhc-CCEec---------CHHHH-H--hCCCEEEECC--
Confidence 678899999996 54444433 4567899999998876555432 22211 12222 1 2589998753
Q ss_pred ccCChhHHHH-HHHHHhcCCCcEEEEEecCCCC
Q 024647 111 HWFDLPQFYN-QVKWVLKKPNGVIATWCYTVPE 142 (265)
Q Consensus 111 ~~~~~~~~l~-~~~~~Lk~pgG~l~~~~~~~~~ 142 (265)
.....+. +....+| +|++++.....+..
T Consensus 276 ---G~~~vI~~~~~~~mK-~GailiNvG~~d~E 304 (425)
T PRK05476 276 ---GNKDVITAEHMEAMK-DGAILANIGHFDNE 304 (425)
T ss_pred ---CCHHHHHHHHHhcCC-CCCEEEEcCCCCCc
Confidence 2234554 6888999 89988876655443
No 388
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=86.20 E-value=2.6 Score=37.56 Aligned_cols=99 Identities=17% Similarity=0.085 Sum_probs=55.2
Q ss_pred CCCeEEEEcCCc-chhHHHHHh-cCCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEecccc
Q 024647 33 NHELAWDVGTGS-GQAAASLSG-IFENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAM 110 (265)
Q Consensus 33 ~~~~vlDvGcG~-G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~ 110 (265)
++.+|+-+|+|. |..+...+. .+.+|+.+|.++.-++.+...-+..+.. ... ...++.+. -..+|+|+....+
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~-~~~-~~~~l~~~---l~~aDvVI~a~~~ 240 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHT-RYS-NAYEIEDA---VKRADLLIGAVLI 240 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEe-ccC-CHHHHHHH---HccCCEEEEcccc
Confidence 346699999985 666665554 4668999999988777654321111111 000 00222222 1358999975322
Q ss_pred ccCC-hhHHHHHHHHHhcCCCcEEEEEe
Q 024647 111 HWFD-LPQFYNQVKWVLKKPNGVIATWC 137 (265)
Q Consensus 111 ~~~~-~~~~l~~~~~~Lk~pgG~l~~~~ 137 (265)
.-.. +.-+-+++.+.++ |+++++-..
T Consensus 241 ~g~~~p~lit~~~l~~mk-~g~vIvDva 267 (370)
T TIGR00518 241 PGAKAPKLVSNSLVAQMK-PGAVIVDVA 267 (370)
T ss_pred CCCCCCcCcCHHHHhcCC-CCCEEEEEe
Confidence 1111 2223466777789 898877433
No 389
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=86.13 E-value=3.9 Score=34.45 Aligned_cols=89 Identities=13% Similarity=0.034 Sum_probs=61.3
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEeccccc
Q 024647 32 TNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMH 111 (265)
Q Consensus 32 ~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~ 111 (265)
.+++..+|+|+-+|..|..|.++.-.|++||-.+ |.+.......+.... +|--++.......|-.+|..+-
T Consensus 210 ~~~M~avDLGAcPGGWTyqLVkr~m~V~aVDng~-ma~sL~dtg~v~h~r-------~DGfk~~P~r~~idWmVCDmVE- 280 (358)
T COG2933 210 APGMWAVDLGACPGGWTYQLVKRNMRVYAVDNGP-MAQSLMDTGQVTHLR-------EDGFKFRPTRSNIDWMVCDMVE- 280 (358)
T ss_pred cCCceeeecccCCCccchhhhhcceEEEEeccch-hhhhhhcccceeeee-------ccCcccccCCCCCceEEeehhc-
Confidence 4678999999999999999999999999999755 444444334555554 3333333234568888876321
Q ss_pred cCChhHHHHHHHHHhcCCCcEE
Q 024647 112 WFDLPQFYNQVKWVLKKPNGVI 133 (265)
Q Consensus 112 ~~~~~~~l~~~~~~Lk~pgG~l 133 (265)
.|.++...+...|. +|+.
T Consensus 281 --kP~rv~~li~~Wl~--nGwC 298 (358)
T COG2933 281 --KPARVAALIAKWLV--NGWC 298 (358)
T ss_pred --CcHHHHHHHHHHHH--cchH
Confidence 45567777788887 5543
No 390
>PRK10458 DNA cytosine methylase; Provisional
Probab=85.80 E-value=5.1 Score=36.88 Aligned_cols=39 Identities=15% Similarity=0.053 Sum_probs=33.2
Q ss_pred CCeEEEEcCCcchhHHHHHhcCCc-EEEEcCCHHHHHHHH
Q 024647 34 HELAWDVGTGSGQAAASLSGIFEN-VIGTETSPKQIEFAT 72 (265)
Q Consensus 34 ~~~vlDvGcG~G~~~~~l~~~~~~-v~~vD~s~~~~~~a~ 72 (265)
..+++|+=||.|.+...+...+.+ |.++|+++...+.-+
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~ 127 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYK 127 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHH
Confidence 358999999999999999888765 678999999887654
No 391
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=85.78 E-value=3.4 Score=34.03 Aligned_cols=71 Identities=18% Similarity=0.113 Sum_probs=46.1
Q ss_pred CeEEEEcCCc--chhHHHHHhcCCcEEEEcCCHHHHHHHHc-CCCceEEecCCccchhhhhhccCCCCceeEEEecc
Q 024647 35 ELAWDVGTGS--GQAAASLSGIFENVIGTETSPKQIEFATK-LPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQ 108 (265)
Q Consensus 35 ~~vlDvGcG~--G~~~~~l~~~~~~v~~vD~s~~~~~~a~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~ 108 (265)
+.++=+|||. +.++..|.+.+.+|+.+|.+++.++.... ......+.+++... .-+++. .-..+|++++..
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~-~~L~~a--gi~~aD~vva~t 74 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDE-DVLEEA--GIDDADAVVAAT 74 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCH-HHHHhc--CCCcCCEEEEee
Confidence 3577889986 35566677788899999999999887332 23556666554211 113333 335689998853
No 392
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=85.69 E-value=15 Score=30.89 Aligned_cols=98 Identities=15% Similarity=0.142 Sum_probs=60.0
Q ss_pred CCCCeEEEEcC-C-cchhHHHHHhc-CCcEEEEcCCHHHHHHHHcCCCceEEecCCc-cchhhhhhccCCCCceeEEEec
Q 024647 32 TNHELAWDVGT-G-SGQAAASLSGI-FENVIGTETSPKQIEFATKLPNIRYELTSPA-MSIAELEQNVAAQSTVDLVTIA 107 (265)
Q Consensus 32 ~~~~~vlDvGc-G-~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~-~~~~d~~~~~~~~~~~Dlv~~~ 107 (265)
.++.+||=.|+ | .|..+..+++. +.++++++.++...+.+++.. +........ .....+..+ .....+|+++..
T Consensus 135 ~~g~~vlI~g~~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~-~~~~~~d~vl~~ 212 (320)
T cd05286 135 KPGDTVLVHAAAGGVGLLLTQWAKALGATVIGTVSSEEKAELARAAG-ADHVINYRDEDFVERVREI-TGGRGVDVVYDG 212 (320)
T ss_pred CCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHCC-CCEEEeCCchhHHHHHHHH-cCCCCeeEEEEC
Confidence 45678888884 3 46666666654 568999999998888876542 222211110 000112222 234569999864
Q ss_pred cccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647 108 QAMHWFDLPQFYNQVKWVLKKPNGVIATWCY 138 (265)
Q Consensus 108 ~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~ 138 (265)
.. ...+..+.+.|+ ++|.++....
T Consensus 213 ~~------~~~~~~~~~~l~-~~g~~v~~g~ 236 (320)
T cd05286 213 VG------KDTFEGSLDSLR-PRGTLVSFGN 236 (320)
T ss_pred CC------cHhHHHHHHhhc-cCcEEEEEec
Confidence 22 246778889999 8999886543
No 393
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=85.67 E-value=18 Score=29.58 Aligned_cols=104 Identities=14% Similarity=0.195 Sum_probs=56.5
Q ss_pred cHHHHHHHHhhCCCCCeEEEEcCCcc--hhHHHHH----hcCCcEEEEcCCHHHHHHHHc-C------CCceEEecCCcc
Q 024647 20 PEELFKFITSKTTNHELAWDVGTGSG--QAAASLS----GIFENVIGTETSPKQIEFATK-L------PNIRYELTSPAM 86 (265)
Q Consensus 20 ~~~l~~~l~~~~~~~~~vlDvGcG~G--~~~~~l~----~~~~~v~~vD~s~~~~~~a~~-~------~~~~~~~~~~~~ 86 (265)
..+++..|... ...+.++++.|+-| ..|..|+ +-+.++++|-+++.-+...++ . .-++|+.+..
T Consensus 29 ~aEfISAlAAG-~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~-- 105 (218)
T PF07279_consen 29 VAEFISALAAG-WNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEA-- 105 (218)
T ss_pred HHHHHHHHhcc-ccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCC--
Confidence 44555555543 34467899976644 3455554 236789999998776554433 1 1245555321
Q ss_pred chhhhhhccCCCCceeEEEeccccccCChhHHHHHHHHHhcC-CCcEEEE
Q 024647 87 SIAELEQNVAAQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKK-PNGVIAT 135 (265)
Q Consensus 87 ~~~d~~~~~~~~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~-pgG~l~~ 135 (265)
.+.+-..-..+|.++.. .....+..++.++++. |.|.+++
T Consensus 106 ----~e~~~~~~~~iDF~vVD-----c~~~d~~~~vl~~~~~~~~GaVVV 146 (218)
T PF07279_consen 106 ----PEEVMPGLKGIDFVVVD-----CKREDFAARVLRAAKLSPRGAVVV 146 (218)
T ss_pred ----HHHHHhhccCCCEEEEe-----CCchhHHHHHHHHhccCCCceEEE
Confidence 23322223468888865 2344455455555541 4566554
No 394
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=85.62 E-value=12 Score=33.02 Aligned_cols=100 Identities=13% Similarity=0.011 Sum_probs=58.4
Q ss_pred CCCCeEEEEcCCc-chhHHHHHhc-CCc-EEEEcCCHHHHHHHHcCCCceEEecCCc--cchhhhhhccCCCCceeEEEe
Q 024647 32 TNHELAWDVGTGS-GQAAASLSGI-FEN-VIGTETSPKQIEFATKLPNIRYELTSPA--MSIAELEQNVAAQSTVDLVTI 106 (265)
Q Consensus 32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~--~~~~d~~~~~~~~~~~Dlv~~ 106 (265)
.++.+||=.|+|. |..+..+++. +.+ |++++.++...+.++++.-..++...-. .....+..+. . +.+|+|+.
T Consensus 182 ~~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~l~~~~-~-~~~d~vid 259 (365)
T cd05279 182 TPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQLGATECINPRDQDKPIVEVLTEMT-D-GGVDYAFE 259 (365)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCCeecccccccchHHHHHHHHh-C-CCCcEEEE
Confidence 4567787788764 6666666664 444 8899999988888765432122211110 0001122222 2 56899986
Q ss_pred ccccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647 107 AQAMHWFDLPQFYNQVKWVLKKPNGVIATWCY 138 (265)
Q Consensus 107 ~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~ 138 (265)
.. .....+..+.+.|++++|+++....
T Consensus 260 ~~-----g~~~~~~~~~~~l~~~~G~~v~~g~ 286 (365)
T cd05279 260 VI-----GSADTLKQALDATRLGGGTSVVVGV 286 (365)
T ss_pred CC-----CCHHHHHHHHHHhccCCCEEEEEec
Confidence 42 1235677778888636898886543
No 395
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=85.55 E-value=8.4 Score=36.33 Aligned_cols=94 Identities=16% Similarity=0.066 Sum_probs=57.6
Q ss_pred CeEEEEcCCc-ch-hHHHHHhcCCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEecccccc
Q 024647 35 ELAWDVGTGS-GQ-AAASLSGIFENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHW 112 (265)
Q Consensus 35 ~~vlDvGcG~-G~-~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~ 112 (265)
++++=+|||. |. .++.|.+++.+++.+|.+++.++.+++ .+.....+++... .-+++. .-+.+|.+++...
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~-~g~~~i~GD~~~~-~~L~~a--~i~~a~~viv~~~--- 490 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRE-RGIRAVLGNAANE-EIMQLA--HLDCARWLLLTIP--- 490 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH-CCCeEEEcCCCCH-HHHHhc--CccccCEEEEEcC---
Confidence 6788888886 43 333445567789999999999999986 4677778665211 112222 2346887765421
Q ss_pred CChh--HHHHHHHHHhcCCCcEEEEEe
Q 024647 113 FDLP--QFYNQVKWVLKKPNGVIATWC 137 (265)
Q Consensus 113 ~~~~--~~l~~~~~~Lk~pgG~l~~~~ 137 (265)
|.. ..+-.+.+.+. |+..++.-.
T Consensus 491 -~~~~~~~iv~~~~~~~-~~~~iiar~ 515 (558)
T PRK10669 491 -NGYEAGEIVASAREKR-PDIEIIARA 515 (558)
T ss_pred -ChHHHHHHHHHHHHHC-CCCeEEEEE
Confidence 222 22444456667 777666533
No 396
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=85.29 E-value=6.1 Score=35.25 Aligned_cols=120 Identities=13% Similarity=0.120 Sum_probs=62.8
Q ss_pred CCCeEEEEcCCcchh----HHHHHhcC--C---cEEEEcC----CHHHHHHHHc-------CCCceEEecCC---ccchh
Q 024647 33 NHELAWDVGTGSGQA----AASLSGIF--E---NVIGTET----SPKQIEFATK-------LPNIRYELTSP---AMSIA 89 (265)
Q Consensus 33 ~~~~vlDvGcG~G~~----~~~l~~~~--~---~v~~vD~----s~~~~~~a~~-------~~~~~~~~~~~---~~~~~ 89 (265)
+.-+|+|+|.|.|.- -..|+.+- + +||||+. +..-++...+ .-++.|.-..+ .+..-
T Consensus 110 ~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fef~~v~~~~~e~l 189 (374)
T PF03514_consen 110 RRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFEFHPVVVESLEDL 189 (374)
T ss_pred cceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEEEEecccCchhhC
Confidence 346899999999843 33344432 2 5999999 6666655432 12455544331 11111
Q ss_pred hhhhccCCCCceeEEEeccccccC-C-------hhHHHHHHHHHhcCCCcEEEEEec---CCCCCChHHHHhhcc
Q 024647 90 ELEQNVAAQSTVDLVTIAQAMHWF-D-------LPQFYNQVKWVLKKPNGVIATWCY---TVPEVNVSVDAVFQP 153 (265)
Q Consensus 90 d~~~~~~~~~~~Dlv~~~~~~~~~-~-------~~~~l~~~~~~Lk~pgG~l~~~~~---~~~~~~~~~~~~~~~ 153 (265)
+...+...++.+=+|-+.+.+|.+ + +.+.+=...+.|+ |.-.+++..- +.+.+...+.+.++.
T Consensus 190 ~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~-P~vvv~~E~ea~~n~~~F~~RF~eal~y 263 (374)
T PF03514_consen 190 DPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLN-PKVVVLVEQEADHNSPSFLERFREALHY 263 (374)
T ss_pred CHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcC-CCEEEEEeecCCCCCCchHHHHHHHHHH
Confidence 122233344555555566678877 2 2223445566788 8865555222 234444555554443
No 397
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=84.87 E-value=14 Score=31.96 Aligned_cols=100 Identities=17% Similarity=0.167 Sum_probs=58.5
Q ss_pred CCCCeEEEEcCCc-chhHHHHHhc-CC-cEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEecc
Q 024647 32 TNHELAWDVGTGS-GQAAASLSGI-FE-NVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQ 108 (265)
Q Consensus 32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~ 108 (265)
.++.+||=.|+|. |..+..+++. +. ++++++.++.-...++++. +.............+... .+.+.+|+++..
T Consensus 166 ~~~~~vlI~g~g~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~l~~~-~~~~~~dvvid~- 242 (344)
T cd08284 166 RPGDTVAVIGCGPVGLCAVLSAQVLGAARVFAVDPVPERLERAAALG-AEPINFEDAEPVERVREA-TEGRGADVVLEA- 242 (344)
T ss_pred ccCCEEEEECCcHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHhC-CeEEecCCcCHHHHHHHH-hCCCCCCEEEEC-
Confidence 4567777777653 5555555554 43 6999988887777766543 221211110000112222 234568998864
Q ss_pred ccccCChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647 109 AMHWFDLPQFYNQVKWVLKKPNGVIATWCYT 139 (265)
Q Consensus 109 ~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~~ 139 (265)
..-...+.++.+.|+ ++|+++.....
T Consensus 243 ----~~~~~~~~~~~~~l~-~~g~~v~~g~~ 268 (344)
T cd08284 243 ----VGGAAALDLAFDLVR-PGGVISSVGVH 268 (344)
T ss_pred ----CCCHHHHHHHHHhcc-cCCEEEEECcC
Confidence 222357888999999 99998875543
No 398
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=84.84 E-value=2.8 Score=30.13 Aligned_cols=88 Identities=16% Similarity=0.172 Sum_probs=53.0
Q ss_pred CCcchhHHHHHhc---CC-cEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEeccccccCChh-
Q 024647 42 TGSGQAAASLSGI---FE-NVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWFDLP- 116 (265)
Q Consensus 42 cG~G~~~~~l~~~---~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~~~~- 116 (265)
||.|.++..+++. .. +|+.+|.++..++.++. .++.+..+++.-. ..++.. .-...|.|++... +..
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~-~~~~~i~gd~~~~-~~l~~a--~i~~a~~vv~~~~----~d~~ 75 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELRE-EGVEVIYGDATDP-EVLERA--GIEKADAVVILTD----DDEE 75 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH-TTSEEEES-TTSH-HHHHHT--TGGCESEEEEESS----SHHH
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHh-cccccccccchhh-hHHhhc--CccccCEEEEccC----CHHH
Confidence 5556677766543 33 79999999999998886 3477888665211 112223 3346888887532 222
Q ss_pred -HHHHHHHHHhcCCCcEEEEEec
Q 024647 117 -QFYNQVKWVLKKPNGVIATWCY 138 (265)
Q Consensus 117 -~~l~~~~~~Lk~pgG~l~~~~~ 138 (265)
..+....+-+. |...++....
T Consensus 76 n~~~~~~~r~~~-~~~~ii~~~~ 97 (116)
T PF02254_consen 76 NLLIALLARELN-PDIRIIARVN 97 (116)
T ss_dssp HHHHHHHHHHHT-TTSEEEEEES
T ss_pred HHHHHHHHHHHC-CCCeEEEEEC
Confidence 24445566677 7777776443
No 399
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=84.61 E-value=2.7 Score=37.58 Aligned_cols=59 Identities=15% Similarity=0.350 Sum_probs=45.2
Q ss_pred CCceEEecCCccchhhhhhcc--CCCCceeEEEeccccccCChh---HHHHHHHHHhcCCCcEEEEEecCCC
Q 024647 75 PNIRYELTSPAMSIAELEQNV--AAQSTVDLVTIAQAMHWFDLP---QFYNQVKWVLKKPNGVIATWCYTVP 141 (265)
Q Consensus 75 ~~~~~~~~~~~~~~~d~~~~~--~~~~~~Dlv~~~~~~~~~~~~---~~l~~~~~~Lk~pgG~l~~~~~~~~ 141 (265)
.+++.+. +++.+.. .+++++|.++.....-|+++. ..++++.+.++ |||+++++....+
T Consensus 275 drv~i~t-------~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~-pgaRV~~Rsa~~~ 338 (380)
T PF11899_consen 275 DRVRIHT-------DSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTAR-PGARVLWRSAAVP 338 (380)
T ss_pred CeEEEEe-------ccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhC-CCCEEEEeeCCCC
Confidence 4566666 4444321 467899999999999999765 57888999999 9999999887644
No 400
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=84.54 E-value=15 Score=31.41 Aligned_cols=96 Identities=11% Similarity=0.084 Sum_probs=59.1
Q ss_pred CCCeEEEEcC-C-cchhHHHHHhc-CCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEeccc
Q 024647 33 NHELAWDVGT-G-SGQAAASLSGI-FENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQA 109 (265)
Q Consensus 33 ~~~~vlDvGc-G-~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~ 109 (265)
.+.+||=.|+ | .|..+..+++. +.+|++++.++...+.+++. ++......-......+..+ ....+|+|+....
T Consensus 146 ~~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~-g~~~v~~~~~~~~~~~~~~--~~~~~d~vld~~g 222 (326)
T cd08289 146 EQGPVLVTGATGGVGSLAVSILAKLGYEVVASTGKADAADYLKKL-GAKEVIPREELQEESIKPL--EKQRWAGAVDPVG 222 (326)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHc-CCCEEEcchhHHHHHHHhh--ccCCcCEEEECCc
Confidence 3467888887 3 36666666654 56899999999888888754 2322221110000112222 2346898875421
Q ss_pred cccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647 110 MHWFDLPQFYNQVKWVLKKPNGVIATWCY 138 (265)
Q Consensus 110 ~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~ 138 (265)
...+....+.|+ ++|+++....
T Consensus 223 ------~~~~~~~~~~l~-~~G~~i~~g~ 244 (326)
T cd08289 223 ------GKTLAYLLSTLQ-YGGSVAVSGL 244 (326)
T ss_pred ------HHHHHHHHHHhh-cCCEEEEEee
Confidence 246788899999 9999987654
No 401
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=84.40 E-value=2.5 Score=32.04 Aligned_cols=98 Identities=22% Similarity=0.210 Sum_probs=55.1
Q ss_pred EEEEcCCc-c-hhHHHHHhcCCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhc---cCCCCceeEEEeccccc
Q 024647 37 AWDVGTGS-G-QAAASLSGIFENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQN---VAAQSTVDLVTIAQAMH 111 (265)
Q Consensus 37 vlDvGcG~-G-~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~---~~~~~~~Dlv~~~~~~~ 111 (265)
|+=+|+|. | .++..|.+.+.+|+.+..++ .++..+. .++.+.....+......... ....+.+|+|+... -
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~v--K 76 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIKE-QGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAV--K 76 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHHH-HCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-S--S
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhhh-eeEEEEecccceecccccccCcchhccCCCcEEEEEe--c
Confidence 45678875 4 34444556678899999988 5555443 12222221100000000001 11346799999863 1
Q ss_pred cCChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647 112 WFDLPQFYNQVKWVLKKPNGVIATWCYT 139 (265)
Q Consensus 112 ~~~~~~~l~~~~~~Lk~pgG~l~~~~~~ 139 (265)
..+....++.+.+.+. ++..+++...+
T Consensus 77 a~~~~~~l~~l~~~~~-~~t~iv~~qNG 103 (151)
T PF02558_consen 77 AYQLEQALQSLKPYLD-PNTTIVSLQNG 103 (151)
T ss_dssp GGGHHHHHHHHCTGEE-TTEEEEEESSS
T ss_pred ccchHHHHHHHhhccC-CCcEEEEEeCC
Confidence 2345678999999999 88777765544
No 402
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=84.31 E-value=9.6 Score=32.01 Aligned_cols=74 Identities=23% Similarity=0.322 Sum_probs=45.5
Q ss_pred hHHHHHhcC--CcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEeccccccCChhHHHHHHHH
Q 024647 47 AAASLSGIF--ENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWFDLPQFYNQVKW 124 (265)
Q Consensus 47 ~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~~~~~~l~~~~~ 124 (265)
+++.|.+.+ .+|+|+|.++..++.|.+..-+.-.. .+.+.. ..+|+|+.+-.+. ....+++++..
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~-------~~~~~~----~~~DlvvlavP~~--~~~~~l~~~~~ 67 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELGIIDEAS-------TDIEAV----EDADLVVLAVPVS--AIEDVLEEIAP 67 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEE-------SHHHHG----GCCSEEEE-S-HH--HHHHHHHHHHC
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeecc-------CCHhHh----cCCCEEEEcCCHH--HHHHHHHHhhh
Confidence 356777777 47999999999999997643333222 122222 2469999864321 23468888888
Q ss_pred HhcCCCcEEE
Q 024647 125 VLKKPNGVIA 134 (265)
Q Consensus 125 ~Lk~pgG~l~ 134 (265)
.++ +|+++.
T Consensus 68 ~~~-~~~iv~ 76 (258)
T PF02153_consen 68 YLK-PGAIVT 76 (258)
T ss_dssp GS--TTSEEE
T ss_pred hcC-CCcEEE
Confidence 888 776665
No 403
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=84.15 E-value=18 Score=30.52 Aligned_cols=97 Identities=16% Similarity=0.107 Sum_probs=58.2
Q ss_pred CCCCeEEEEcCC--cchhHHHHHhc-CCcEEEEcCCHHHHHHHHcCCCceEEecCCc-cchhhhhhccCCCCceeEEEec
Q 024647 32 TNHELAWDVGTG--SGQAAASLSGI-FENVIGTETSPKQIEFATKLPNIRYELTSPA-MSIAELEQNVAAQSTVDLVTIA 107 (265)
Q Consensus 32 ~~~~~vlDvGcG--~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~-~~~~d~~~~~~~~~~~Dlv~~~ 107 (265)
.++..|+-.||. .|..+..+++. +.++++++.++...+.++... +........ .....+... .....+|+++..
T Consensus 138 ~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~i~~~-~~~~~~d~v~~~ 215 (323)
T cd08241 138 QPGETVLVLGAAGGVGLAAVQLAKALGARVIAAASSEEKLALARALG-ADHVIDYRDPDLRERVKAL-TGGRGVDVVYDP 215 (323)
T ss_pred CCCCEEEEEcCCchHHHHHHHHHHHhCCEEEEEeCCHHHHHHHHHcC-CceeeecCCccHHHHHHHH-cCCCCcEEEEEC
Confidence 466889999982 46666666554 568999999988888776532 221111110 000112222 233468998864
Q ss_pred cccccCChhHHHHHHHHHhcCCCcEEEEEe
Q 024647 108 QAMHWFDLPQFYNQVKWVLKKPNGVIATWC 137 (265)
Q Consensus 108 ~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~ 137 (265)
.. ...+..+.+.++ ++|.++...
T Consensus 216 ~g------~~~~~~~~~~~~-~~g~~v~~~ 238 (323)
T cd08241 216 VG------GDVFEASLRSLA-WGGRLLVIG 238 (323)
T ss_pred cc------HHHHHHHHHhhc-cCCEEEEEc
Confidence 32 245677888999 899987644
No 404
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=84.01 E-value=2 Score=38.14 Aligned_cols=119 Identities=17% Similarity=0.187 Sum_probs=67.0
Q ss_pred HHhh-hCCCCcHHHHHHHHhh-----CCCCCeEEEEcCCcchhHHHHHhcCC--cEEEEcCCHHHHHHHHc---------
Q 024647 11 QYAE-TRPNYPEELFKFITSK-----TTNHELAWDVGTGSGQAAASLSGIFE--NVIGTETSPKQIEFATK--------- 73 (265)
Q Consensus 11 ~Y~~-~rp~y~~~l~~~l~~~-----~~~~~~vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~--------- 73 (265)
+|.. .-+.|.+...+.+... .++.+...|+|.|-|+....++..+. .=+|+++.+..-+.+..
T Consensus 164 hYk~~ss~~YGE~~~~ql~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~ 243 (419)
T KOG3924|consen 164 HYKSFSSETYGETQLEQLRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLM 243 (419)
T ss_pred hhccccccchhhhhHHHHHHHHHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHH
Confidence 4554 3346655555555443 36778899999999999999887653 45677665544333221
Q ss_pred --C---C-CceEEecCCccchhhhhhccCCCCceeEEEeccccccCChh--HHHHHHHHHhcCCCcEEEEE
Q 024647 74 --L---P-NIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWFDLP--QFYNQVKWVLKKPNGVIATW 136 (265)
Q Consensus 74 --~---~-~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~~~~--~~l~~~~~~Lk~pgG~l~~~ 136 (265)
. + .++.+.+ .++..+... .-....++|+++... ||++ .-+.++..-++ +|-.++-.
T Consensus 244 k~fGk~~~~~~~i~g--sf~~~~~v~--eI~~eatvi~vNN~~--Fdp~L~lr~~eil~~ck-~gtrIiS~ 307 (419)
T KOG3924|consen 244 KHFGKKPNKIETIHG--SFLDPKRVT--EIQTEATVIFVNNVA--FDPELKLRSKEILQKCK-DGTRIISS 307 (419)
T ss_pred HHhCCCcCceeeccc--ccCCHHHHH--HHhhcceEEEEeccc--CCHHHHHhhHHHHhhCC-CcceEecc
Confidence 0 1 1222221 111111111 123457888888753 3444 34457777788 77777643
No 405
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=83.92 E-value=18 Score=31.10 Aligned_cols=89 Identities=13% Similarity=0.069 Sum_probs=56.6
Q ss_pred CCCCeEEEEcCCc-chhHHHHHh-cCCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEeccc
Q 024647 32 TNHELAWDVGTGS-GQAAASLSG-IFENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQA 109 (265)
Q Consensus 32 ~~~~~vlDvGcG~-G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~ 109 (265)
.++.++|-.|||. |..+..+++ .+.++++++.++...+.+++.. +..... .... +...+|+++...
T Consensus 166 ~~~~~vlV~g~g~vg~~~~~la~~~g~~v~~~~~~~~~~~~~~~~g-~~~~~~--------~~~~--~~~~vD~vi~~~- 233 (329)
T cd08298 166 KPGQRLGLYGFGASAHLALQIARYQGAEVFAFTRSGEHQELARELG-ADWAGD--------SDDL--PPEPLDAAIIFA- 233 (329)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHHhC-CcEEec--------cCcc--CCCcccEEEEcC-
Confidence 4556777788764 555555554 4568999999988888776532 322211 0111 234688877531
Q ss_pred cccCChhHHHHHHHHHhcCCCcEEEEEe
Q 024647 110 MHWFDLPQFYNQVKWVLKKPNGVIATWC 137 (265)
Q Consensus 110 ~~~~~~~~~l~~~~~~Lk~pgG~l~~~~ 137 (265)
.....+.++.+.|+ ++|+++...
T Consensus 234 ----~~~~~~~~~~~~l~-~~G~~v~~g 256 (329)
T cd08298 234 ----PVGALVPAALRAVK-KGGRVVLAG 256 (329)
T ss_pred ----CcHHHHHHHHHHhh-cCCEEEEEc
Confidence 12357899999999 999998754
No 406
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=83.77 E-value=13 Score=32.24 Aligned_cols=100 Identities=13% Similarity=0.044 Sum_probs=61.4
Q ss_pred CCCCCeEEEEcCCc-chhHHHHHh-cCC-cEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhc--cCCCCceeEEE
Q 024647 31 TTNHELAWDVGTGS-GQAAASLSG-IFE-NVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQN--VAAQSTVDLVT 105 (265)
Q Consensus 31 ~~~~~~vlDvGcG~-G~~~~~l~~-~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~Dlv~ 105 (265)
..++.++.-.|+|. |.....-++ +++ +++|||+++.-.+.|+++.-.++++.. .....+++. ..-++.+|.-+
T Consensus 190 v~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~fGaTe~iNp~--d~~~~i~evi~EmTdgGvDysf 267 (375)
T KOG0022|consen 190 VEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEFGATEFINPK--DLKKPIQEVIIEMTDGGVDYSF 267 (375)
T ss_pred cCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhcCcceecChh--hccccHHHHHHHHhcCCceEEE
Confidence 35678888888887 544444444 344 799999999999999987555555421 000001110 01345666655
Q ss_pred eccccccCChhHHHHHHHHHhcCCC-cEEEEEec
Q 024647 106 IAQAMHWFDLPQFYNQVKWVLKKPN-GVIATWCY 138 (265)
Q Consensus 106 ~~~~~~~~~~~~~l~~~~~~Lk~pg-G~l~~~~~ 138 (265)
-. .....++.++....+ .| |.-++...
T Consensus 268 Ec-----~G~~~~m~~al~s~h-~GwG~sv~iGv 295 (375)
T KOG0022|consen 268 EC-----IGNVSTMRAALESCH-KGWGKSVVIGV 295 (375)
T ss_pred Ee-----cCCHHHHHHHHHHhh-cCCCeEEEEEe
Confidence 32 344678888888888 67 87666444
No 407
>PF08484 Methyltransf_14: C-methyltransferase C-terminal domain; InterPro: IPR013691 This domain is found in bacterial C-methyltransferase proteins, often together with other methyltransferase domains such as IPR013216 from INTERPRO or IPR013217 from INTERPRO. ; PDB: 4E2X_A 3NDJ_A 3NDI_A 4E32_A 4E33_A 4E31_A 4E2Y_A 4E2W_A 4E2Z_A 4E30_A.
Probab=83.47 E-value=6.8 Score=30.45 Aligned_cols=114 Identities=17% Similarity=0.229 Sum_probs=53.4
Q ss_pred HHHHHHHHHhhhCCCCcHHHHHHHHhhCCCCCeEEEEcCCcchhHH-HHHhcCCc--EEEEcCCHHHHHHHHcCCCceEE
Q 024647 4 LFIKQAKQYAETRPNYPEELFKFITSKTTNHELAWDVGTGSGQAAA-SLSGIFEN--VIGTETSPKQIEFATKLPNIRYE 80 (265)
Q Consensus 4 ~f~~~a~~Y~~~rp~y~~~l~~~l~~~~~~~~~vlDvGcG~G~~~~-~l~~~~~~--v~~vD~s~~~~~~a~~~~~~~~~ 80 (265)
.|...++..++.+ .++.+.|......+.+|.=.|+|....+. .++....+ ...+|.++. .+.+-.++...-
T Consensus 42 ~y~~f~~~~~~~~----~~l~~~L~~~~~~gk~I~~yGA~~kg~tlln~~g~~~~~I~~vvD~np~--K~G~~~PGt~ip 115 (160)
T PF08484_consen 42 YYENFAKRVEQSK----AELREFLEKLKAEGKRIAGYGAGAKGNTLLNYFGLDNDLIDYVVDDNPL--KQGKYLPGTHIP 115 (160)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHTT--EEEE---SHHHHHHHHHT--TTTS--EEES-GG--GTTEE-TTT--E
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHcCCEEEEECcchHHHHHHHHhCCCcceeEEEEeCChh--hcCcccCCCCCe
Confidence 3444444444432 34555555444566889999999865554 34444344 357788765 222223443332
Q ss_pred ecCCccchhhhhhccCCCCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEE
Q 024647 81 LTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATW 136 (265)
Q Consensus 81 ~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~ 136 (265)
..+ .+.+ .....|.|+.. + |.-.+...+++...+. .||.|++-
T Consensus 116 I~~-------p~~l--~~~~pd~vivl-a--w~y~~EI~~~~~~~~~-~gg~fi~p 158 (160)
T PF08484_consen 116 IVS-------PEEL--KERKPDYVIVL-A--WNYKDEIIEKLREYLE-RGGKFIVP 158 (160)
T ss_dssp EEE-------GGG----SS--SEEEES----GGGHHHHHHHTHHHHH-TT-EEEE-
T ss_pred ECC-------HHHH--hhCCCCEEEEc-C--hhhHHHHHHHHHHHHh-cCCEEEEe
Confidence 211 1222 33457887762 2 3334678888888889 89999874
No 408
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=83.47 E-value=20 Score=30.29 Aligned_cols=95 Identities=17% Similarity=0.139 Sum_probs=60.4
Q ss_pred CCCCeEEEEcC--CcchhHHHHHhc-CCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEecc
Q 024647 32 TNHELAWDVGT--GSGQAAASLSGI-FENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQ 108 (265)
Q Consensus 32 ~~~~~vlDvGc--G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~ 108 (265)
.++.+||-.|+ +.|..+..+++. +.+|+++..++...+.+++. ++.............+..+ ...+|+++...
T Consensus 141 ~~g~~vlV~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~i~~~---~~~~d~vl~~~ 216 (320)
T cd08243 141 QPGDTLLIRGGTSSVGLAALKLAKALGATVTATTRSPERAALLKEL-GADEVVIDDGAIAEQLRAA---PGGFDKVLELV 216 (320)
T ss_pred CCCCEEEEEcCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhc-CCcEEEecCccHHHHHHHh---CCCceEEEECC
Confidence 45678888886 347777777764 56899999999888877653 2222211110011122222 45699998642
Q ss_pred ccccCChhHHHHHHHHHhcCCCcEEEEEe
Q 024647 109 AMHWFDLPQFYNQVKWVLKKPNGVIATWC 137 (265)
Q Consensus 109 ~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~ 137 (265)
. ...+.++.+.|+ ++|+++...
T Consensus 217 ~------~~~~~~~~~~l~-~~g~~v~~g 238 (320)
T cd08243 217 G------TATLKDSLRHLR-PGGIVCMTG 238 (320)
T ss_pred C------hHHHHHHHHHhc-cCCEEEEEc
Confidence 2 256888899999 999988654
No 409
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=83.45 E-value=20 Score=31.17 Aligned_cols=98 Identities=13% Similarity=0.172 Sum_probs=57.2
Q ss_pred CCCCeEEEEcCCc-chhHHHHHhc-CC-cEEEEcCCHHHHHHHHcCCCceEEecCCc-cchhhhhhccCCCCceeEEEec
Q 024647 32 TNHELAWDVGTGS-GQAAASLSGI-FE-NVIGTETSPKQIEFATKLPNIRYELTSPA-MSIAELEQNVAAQSTVDLVTIA 107 (265)
Q Consensus 32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~-~~~~d~~~~~~~~~~~Dlv~~~ 107 (265)
.++.+||-.|+|. |..+..+++. +. .++++|.++...+.+++.. +........ .....+..+ .+...+|+++..
T Consensus 173 ~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g-~~~v~~~~~~~~~~~~~~~-~~~~~vdvvld~ 250 (350)
T cd08256 173 KFDDVVVLAGAGPLGLGMIGAARLKNPKKLIVLDLKDERLALARKFG-ADVVLNPPEVDVVEKIKEL-TGGYGCDIYIEA 250 (350)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCHHHHHHHHHcC-CcEEecCCCcCHHHHHHHH-hCCCCCCEEEEC
Confidence 4556666677654 5566666655 33 4889999988887776542 222211100 000112222 133458988864
Q ss_pred cccccCChhHHHHHHHHHhcCCCcEEEEEe
Q 024647 108 QAMHWFDLPQFYNQVKWVLKKPNGVIATWC 137 (265)
Q Consensus 108 ~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~ 137 (265)
......+..+.+.|+ ++|+++...
T Consensus 251 -----~g~~~~~~~~~~~l~-~~G~~v~~g 274 (350)
T cd08256 251 -----TGHPSAVEQGLNMIR-KLGRFVEFS 274 (350)
T ss_pred -----CCChHHHHHHHHHhh-cCCEEEEEc
Confidence 222346888999999 999988754
No 410
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=83.45 E-value=13 Score=32.18 Aligned_cols=95 Identities=22% Similarity=0.184 Sum_probs=57.4
Q ss_pred CCCCeEEEEcCCc-chhHHHHHhc-CCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEeccc
Q 024647 32 TNHELAWDVGTGS-GQAAASLSGI-FENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQA 109 (265)
Q Consensus 32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~ 109 (265)
.++.+++=.|||. |..+..+++. +.++++++.++...+.++.+....+..... .+... ...+.+|+|+....
T Consensus 168 ~~g~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~vi~~~~----~~~~~--~~~~~~d~v~~~~g 241 (337)
T cd05283 168 GPGKRVGVVGIGGLGHLAVKFAKALGAEVTAFSRSPSKKEDALKLGADEFIATKD----PEAMK--KAAGSLDLIIDTVS 241 (337)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCCcEEecCcc----hhhhh--hccCCceEEEECCC
Confidence 4556666678754 6666666654 558999999998888876543112221110 11111 11356888885422
Q ss_pred cccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647 110 MHWFDLPQFYNQVKWVLKKPNGVIATWCY 138 (265)
Q Consensus 110 ~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~ 138 (265)
....+..+.+.|+ ++|+++....
T Consensus 242 -----~~~~~~~~~~~l~-~~G~~v~~g~ 264 (337)
T cd05283 242 -----ASHDLDPYLSLLK-PGGTLVLVGA 264 (337)
T ss_pred -----CcchHHHHHHHhc-CCCEEEEEec
Confidence 2235788899999 8999887543
No 411
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=83.00 E-value=9.7 Score=34.48 Aligned_cols=39 Identities=21% Similarity=0.290 Sum_probs=29.7
Q ss_pred CeEEEEcCCcc--hhHHHHHhcCCcEEEEcCCHHHHHHHHc
Q 024647 35 ELAWDVGTGSG--QAAASLSGIFENVIGTETSPKQIEFATK 73 (265)
Q Consensus 35 ~~vlDvGcG~G--~~~~~l~~~~~~v~~vD~s~~~~~~a~~ 73 (265)
++|-=||.|.. .++..|++++.+|+++|+++..++..+.
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~ 44 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINR 44 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHC
Confidence 45778888863 4444567788899999999999887653
No 412
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=82.88 E-value=11 Score=35.99 Aligned_cols=94 Identities=15% Similarity=0.065 Sum_probs=58.8
Q ss_pred CCeEEEEcCCc-chhH-HHHHhcCCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhcc-CCCCceeEEEecccc
Q 024647 34 HELAWDVGTGS-GQAA-ASLSGIFENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNV-AAQSTVDLVTIAQAM 110 (265)
Q Consensus 34 ~~~vlDvGcG~-G~~~-~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~Dlv~~~~~~ 110 (265)
.++|+=+|||. |+.. +.|.+.+.+++.+|.+++.++.+++ .+.....+++ .+.+-+. ..-+..|++++...
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~-~g~~v~~GDa----t~~~~L~~agi~~A~~vvv~~~- 473 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRK-FGMKVFYGDA----TRMDLLESAGAAKAEVLINAID- 473 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh-cCCeEEEEeC----CCHHHHHhcCCCcCCEEEEEeC-
Confidence 46799999986 6544 3455567789999999999999986 3566677554 2222221 13346888887521
Q ss_pred ccCChhH--HHHHHHHHhcCCCcEEEEEe
Q 024647 111 HWFDLPQ--FYNQVKWVLKKPNGVIATWC 137 (265)
Q Consensus 111 ~~~~~~~--~l~~~~~~Lk~pgG~l~~~~ 137 (265)
|.+. .+-...|-+. |+-.++.-.
T Consensus 474 ---d~~~n~~i~~~ar~~~-p~~~iiaRa 498 (621)
T PRK03562 474 ---DPQTSLQLVELVKEHF-PHLQIIARA 498 (621)
T ss_pred ---CHHHHHHHHHHHHHhC-CCCeEEEEE
Confidence 3332 3334455567 776665533
No 413
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=82.87 E-value=21 Score=31.50 Aligned_cols=102 Identities=17% Similarity=0.069 Sum_probs=61.0
Q ss_pred CCCCeEEEEcCCc-chhHHHHHhc-CC-cEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEecc
Q 024647 32 TNHELAWDVGTGS-GQAAASLSGI-FE-NVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQ 108 (265)
Q Consensus 32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~ 108 (265)
.++.+||-.|||. |..+..+++. +. +++++|.++...+.+++.. +......-......+..+. + +.+|+++...
T Consensus 175 ~~g~~vlI~g~g~vg~~~~~~a~~~G~~~vi~~~~~~~~~~~~~~~g-~~~v~~~~~~~~~~i~~~~-~-~~~d~v~d~~ 251 (375)
T cd08282 175 QPGDTVAVFGAGPVGLMAAYSAILRGASRVYVVDHVPERLDLAESIG-AIPIDFSDGDPVEQILGLE-P-GGVDRAVDCV 251 (375)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcC-CeEeccCcccHHHHHHHhh-C-CCCCEEEECC
Confidence 4567777788874 6666666654 44 6889999998888877643 2222111000001122221 2 4689998643
Q ss_pred ccc----cC--ChhHHHHHHHHHhcCCCcEEEEEe
Q 024647 109 AMH----WF--DLPQFYNQVKWVLKKPNGVIATWC 137 (265)
Q Consensus 109 ~~~----~~--~~~~~l~~~~~~Lk~pgG~l~~~~ 137 (265)
.-. +. +....+.++.++|+ ++|.++...
T Consensus 252 g~~~~~~~~~~~~~~~~~~~~~~l~-~~g~~~~~g 285 (375)
T cd08282 252 GYEARDRGGEAQPNLVLNQLIRVTR-PGGGIGIVG 285 (375)
T ss_pred CCcccccccccchHHHHHHHHHHhh-cCcEEEEEe
Confidence 211 11 33457889999999 999987544
No 414
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=82.71 E-value=24 Score=30.18 Aligned_cols=97 Identities=13% Similarity=0.088 Sum_probs=58.6
Q ss_pred CCCCeEEEEcC-C-cchhHHHHHhc-CCcEEEEcCCHHHHHHHHc-CCCceEEecCCccchhhhhhccCCCCceeEEEec
Q 024647 32 TNHELAWDVGT-G-SGQAAASLSGI-FENVIGTETSPKQIEFATK-LPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIA 107 (265)
Q Consensus 32 ~~~~~vlDvGc-G-~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~ 107 (265)
.++.+||=.|+ | .|..+..+++. +.++++++.++...+.+++ ..-..+....-......+.... .+.+|+++..
T Consensus 144 ~~~~~vlI~g~~g~ig~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~~~--~~~~d~vi~~ 221 (329)
T cd05288 144 KPGETVVVSAAAGAVGSVVGQIAKLLGARVVGIAGSDEKCRWLVEELGFDAAINYKTPDLAEALKEAA--PDGIDVYFDN 221 (329)
T ss_pred CCCCEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhhcCCceEEecCChhHHHHHHHhc--cCCceEEEEc
Confidence 45677888884 3 46776666654 5689999999888887765 3211222211100001122221 2568988854
Q ss_pred cccccCChhHHHHHHHHHhcCCCcEEEEEe
Q 024647 108 QAMHWFDLPQFYNQVKWVLKKPNGVIATWC 137 (265)
Q Consensus 108 ~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~ 137 (265)
.. ...+..+.+.|+ ++|+++...
T Consensus 222 ~g------~~~~~~~~~~l~-~~G~~v~~g 244 (329)
T cd05288 222 VG------GEILDAALTLLN-KGGRIALCG 244 (329)
T ss_pred ch------HHHHHHHHHhcC-CCceEEEEe
Confidence 22 247888899999 899988654
No 415
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=82.70 E-value=4.5 Score=35.34 Aligned_cols=71 Identities=15% Similarity=0.159 Sum_probs=50.1
Q ss_pred CCeEEEEcCCcchhHHHHHhcCCc-EEEEcCCHHHHHHHHc-CCCceEEecCCccchhhhhhccC---CCCceeEEEecc
Q 024647 34 HELAWDVGTGSGQAAASLSGIFEN-VIGTETSPKQIEFATK-LPNIRYELTSPAMSIAELEQNVA---AQSTVDLVTIAQ 108 (265)
Q Consensus 34 ~~~vlDvGcG~G~~~~~l~~~~~~-v~~vD~s~~~~~~a~~-~~~~~~~~~~~~~~~~d~~~~~~---~~~~~Dlv~~~~ 108 (265)
..+++|+=||-|.+...+...+.+ +.++|+++..++.-+. ++...... .|+..... ....+|+++...
T Consensus 3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~~~~~~-------~di~~~~~~~~~~~~~DvligGp 75 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPHGDIIL-------GDIKELDGEALRKSDVDVLIGGP 75 (328)
T ss_pred CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCCCceee-------chHhhcChhhccccCCCEEEeCC
Confidence 357999999999999999988865 7799999999987664 33333333 34443321 111799999977
Q ss_pred ccc
Q 024647 109 AMH 111 (265)
Q Consensus 109 ~~~ 111 (265)
.+.
T Consensus 76 PCQ 78 (328)
T COG0270 76 PCQ 78 (328)
T ss_pred CCc
Confidence 554
No 416
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=82.68 E-value=20 Score=30.62 Aligned_cols=97 Identities=12% Similarity=0.114 Sum_probs=56.9
Q ss_pred CCCCeEEEEcC-C-cchhHHHHHhc-CCcEEEEcCCHHHHHHHHcCCCceEEecCCc-cchhhhhhccCCCCceeEEEec
Q 024647 32 TNHELAWDVGT-G-SGQAAASLSGI-FENVIGTETSPKQIEFATKLPNIRYELTSPA-MSIAELEQNVAAQSTVDLVTIA 107 (265)
Q Consensus 32 ~~~~~vlDvGc-G-~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~-~~~~d~~~~~~~~~~~Dlv~~~ 107 (265)
.++.+||=.|+ | .|..+..+++. +.+++.+.-+++..+.+++. ++........ .....+..+ .....+|+|+..
T Consensus 138 ~~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~i~~~-~~~~~~d~v~d~ 215 (324)
T cd08292 138 KPGQWLIQNAAGGAVGKLVAMLAAARGINVINLVRRDAGVAELRAL-GIGPVVSTEQPGWQDKVREA-AGGAPISVALDS 215 (324)
T ss_pred CCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHhc-CCCEEEcCCCchHHHHHHHH-hCCCCCcEEEEC
Confidence 45677877775 3 47777777765 56777776666666666553 3322221110 000112222 233469999854
Q ss_pred cccccCChhHHHHHHHHHhcCCCcEEEEEe
Q 024647 108 QAMHWFDLPQFYNQVKWVLKKPNGVIATWC 137 (265)
Q Consensus 108 ~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~ 137 (265)
.. . ..+.++.+.|+ ++|+++...
T Consensus 216 ~g----~--~~~~~~~~~l~-~~g~~v~~g 238 (324)
T cd08292 216 VG----G--KLAGELLSLLG-EGGTLVSFG 238 (324)
T ss_pred CC----C--hhHHHHHHhhc-CCcEEEEEe
Confidence 22 2 35678899999 999998654
No 417
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=82.63 E-value=7.5 Score=33.20 Aligned_cols=38 Identities=21% Similarity=0.168 Sum_probs=29.5
Q ss_pred CeEEEEcCCc-c-hhHHHHHhcCCcEEEEcCCHHHHHHHH
Q 024647 35 ELAWDVGTGS-G-QAAASLSGIFENVIGTETSPKQIEFAT 72 (265)
Q Consensus 35 ~~vlDvGcG~-G-~~~~~l~~~~~~v~~vD~s~~~~~~a~ 72 (265)
.+|.-||||. | .++..++..+.+|+.+|.+++.++.+.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~ 43 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAM 43 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHH
Confidence 4578899996 3 455566777889999999999987653
No 418
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=82.52 E-value=7.5 Score=33.17 Aligned_cols=37 Identities=19% Similarity=0.005 Sum_probs=29.1
Q ss_pred eEEEEcCCc--chhHHHHHhcCCcEEEEcCCHHHHHHHH
Q 024647 36 LAWDVGTGS--GQAAASLSGIFENVIGTETSPKQIEFAT 72 (265)
Q Consensus 36 ~vlDvGcG~--G~~~~~l~~~~~~v~~vD~s~~~~~~a~ 72 (265)
+|.=||+|. +.++..+++.+.+|+.+|.+++.++.+.
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~ 41 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQ 41 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHH
Confidence 577889986 3455556777889999999999988765
No 419
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=82.31 E-value=8.2 Score=33.27 Aligned_cols=88 Identities=16% Similarity=0.180 Sum_probs=51.7
Q ss_pred CeEEEEcCCc-c-hhHHHHHhcC--CcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEecccc
Q 024647 35 ELAWDVGTGS-G-QAAASLSGIF--ENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAM 110 (265)
Q Consensus 35 ~~vlDvGcG~-G-~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~ 110 (265)
.+|.=||+|. | .++..+.+.+ .+|+++|.++..++.+++..-..... .+.+.. -...|+|+.....
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~-------~~~~~~---~~~aDvViiavp~ 76 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVT-------TSAAEA---VKGADLVILCVPV 76 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceec-------CCHHHH---hcCCCEEEECCCH
Confidence 5688899986 3 4445565555 37999999999888776532111111 112221 1357998876432
Q ss_pred ccCChhHHHHHHHHHhcCCCcEEEE
Q 024647 111 HWFDLPQFYNQVKWVLKKPNGVIAT 135 (265)
Q Consensus 111 ~~~~~~~~l~~~~~~Lk~pgG~l~~ 135 (265)
. ....++.++...++ +|+.++.
T Consensus 77 ~--~~~~v~~~l~~~l~-~~~iv~d 98 (307)
T PRK07502 77 G--ASGAVAAEIAPHLK-PGAIVTD 98 (307)
T ss_pred H--HHHHHHHHHHhhCC-CCCEEEe
Confidence 2 12345666767778 7775543
No 420
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=82.21 E-value=8.1 Score=35.12 Aligned_cols=72 Identities=22% Similarity=0.117 Sum_probs=44.9
Q ss_pred CCCeEEEEcCCc-ch-hHHHHHhcCCcEEEEcCCHHHHHHHHc-CCCceEEecCCccchhhhhhccCCCCceeEEEec
Q 024647 33 NHELAWDVGTGS-GQ-AAASLSGIFENVIGTETSPKQIEFATK-LPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIA 107 (265)
Q Consensus 33 ~~~~vlDvGcG~-G~-~~~~l~~~~~~v~~vD~s~~~~~~a~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~ 107 (265)
..++++=+|||. |. ++..|.+.+.+|+.+|.+++.++.++. ..++....+++... ..++.. .-..+|.|++.
T Consensus 230 ~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~-~~L~~~--~~~~a~~vi~~ 304 (453)
T PRK09496 230 PVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQ-ELLEEE--GIDEADAFIAL 304 (453)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCH-HHHHhc--CCccCCEEEEC
Confidence 357788888864 32 222334456789999999999887765 34677777665211 222222 23468888764
No 421
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=82.12 E-value=10 Score=32.70 Aligned_cols=90 Identities=14% Similarity=0.141 Sum_probs=54.9
Q ss_pred CCCeEEEEcCCc-chhHHHH-HhcCCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEecccc
Q 024647 33 NHELAWDVGTGS-GQAAASL-SGIFENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAM 110 (265)
Q Consensus 33 ~~~~vlDvGcG~-G~~~~~l-~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~ 110 (265)
.+.+|+=+|+|. |...... ...+++|+.+|.++...+.++.. +..+... .++.+. -..+|+|+....
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~-G~~~~~~------~~l~~~---l~~aDiVI~t~p- 219 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARITEM-GLSPFHL------SELAEE---VGKIDIIFNTIP- 219 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHc-CCeeecH------HHHHHH---hCCCCEEEECCC-
Confidence 468899999985 4333333 34567899999998877777653 3332210 222222 135899997532
Q ss_pred ccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647 111 HWFDLPQFYNQVKWVLKKPNGVIATWCY 138 (265)
Q Consensus 111 ~~~~~~~~l~~~~~~Lk~pgG~l~~~~~ 138 (265)
..-.-+++...++ ||+.++=..+
T Consensus 220 ----~~~i~~~~l~~~~-~g~vIIDla~ 242 (296)
T PRK08306 220 ----ALVLTKEVLSKMP-PEALIIDLAS 242 (296)
T ss_pred ----hhhhhHHHHHcCC-CCcEEEEEcc
Confidence 1223456677889 8887764333
No 422
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=82.10 E-value=20 Score=31.80 Aligned_cols=99 Identities=13% Similarity=0.046 Sum_probs=59.1
Q ss_pred CCCCeEEEEcC-C-cchhHHHHHhc-CCcEEEEcCCHHHHHHHHcCCCceEEecCCc----------------------c
Q 024647 32 TNHELAWDVGT-G-SGQAAASLSGI-FENVIGTETSPKQIEFATKLPNIRYELTSPA----------------------M 86 (265)
Q Consensus 32 ~~~~~vlDvGc-G-~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~----------------------~ 86 (265)
.++.+||-.|+ | .|..+..+++. +.++++++.++...+.++++.....+...-. .
T Consensus 192 ~~g~~vlV~ga~g~iG~a~~~lak~~G~~vv~~~~s~~~~~~~~~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (393)
T cd08246 192 KPGDNVLIWGASGGLGSMAIQLARAAGANPVAVVSSEEKAEYCRALGAEGVINRRDFDHWGVLPDVNSEAYTAWTKEARR 271 (393)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHcCCCEEEcccccccccccccccchhhhhhhhccch
Confidence 45678888887 3 36666666664 5678889999998888876421111111000 0
Q ss_pred chhhhhhccCCCC-ceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647 87 SIAELEQNVAAQS-TVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCY 138 (265)
Q Consensus 87 ~~~d~~~~~~~~~-~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~ 138 (265)
....+..+ .... .+|+|+.... ...+.+..+.|+ ++|+++....
T Consensus 272 ~~~~v~~l-~~~~~g~d~vid~~g------~~~~~~~~~~l~-~~G~~v~~g~ 316 (393)
T cd08246 272 FGKAIWDI-LGGREDPDIVFEHPG------RATFPTSVFVCD-RGGMVVICAG 316 (393)
T ss_pred HHHHHHHH-hCCCCCCeEEEECCc------hHhHHHHHHHhc-cCCEEEEEcc
Confidence 00111112 1223 5898886422 245778889999 8999987543
No 423
>PRK08177 short chain dehydrogenase; Provisional
Probab=82.10 E-value=12 Score=30.23 Aligned_cols=74 Identities=22% Similarity=0.181 Sum_probs=40.8
Q ss_pred CeEEEEcCCcc---hhHHHHHhcCCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhcc--CCCCceeEEEeccc
Q 024647 35 ELAWDVGTGSG---QAAASLSGIFENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNV--AAQSTVDLVTIAQA 109 (265)
Q Consensus 35 ~~vlDvGcG~G---~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~Dlv~~~~~ 109 (265)
+++|=.|+..| .++..|++.+.+|++++.++.-.+..+...++.+...+.... .++..+- +..+.+|+|+.+..
T Consensus 2 k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~d~-~~~~~~~~~~~~~~id~vi~~ag 80 (225)
T PRK08177 2 RTALIIGASRGLGLGLVDRLLERGWQVTATVRGPQQDTALQALPGVHIEKLDMNDP-ASLDQLLQRLQGQRFDLLFVNAG 80 (225)
T ss_pred CEEEEeCCCchHHHHHHHHHHhCCCEEEEEeCCCcchHHHHhccccceEEcCCCCH-HHHHHHHHHhhcCCCCEEEEcCc
Confidence 35676776443 234445566778999998876665554444556655544211 1111110 12346899887653
No 424
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=82.08 E-value=22 Score=30.82 Aligned_cols=94 Identities=20% Similarity=0.186 Sum_probs=56.7
Q ss_pred CCCCeEEEEcC-C-cchhHHHHHhc-CCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhc-cCCCCceeEEEec
Q 024647 32 TNHELAWDVGT-G-SGQAAASLSGI-FENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQN-VAAQSTVDLVTIA 107 (265)
Q Consensus 32 ~~~~~vlDvGc-G-~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~Dlv~~~ 107 (265)
.++.+||-.|+ | .|..+..+++. +.++++++.+. ..+.+++. ++........ .+.... ......+|+|+..
T Consensus 176 ~~g~~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~~~-~~~~~~~~-g~~~~~~~~~---~~~~~~~~~~~~~~d~vi~~ 250 (350)
T cd08274 176 GAGETVLVTGASGGVGSALVQLAKRRGAIVIAVAGAA-KEEAVRAL-GADTVILRDA---PLLADAKALGGEPVDVVADV 250 (350)
T ss_pred CCCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCch-hhHHHHhc-CCeEEEeCCC---ccHHHHHhhCCCCCcEEEec
Confidence 46678888987 3 36666666654 56888887655 56666653 2322221110 011111 1234569999864
Q ss_pred cccccCChhHHHHHHHHHhcCCCcEEEEEe
Q 024647 108 QAMHWFDLPQFYNQVKWVLKKPNGVIATWC 137 (265)
Q Consensus 108 ~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~ 137 (265)
.. ...+..+.+.|+ ++|.++...
T Consensus 251 ~g------~~~~~~~~~~l~-~~G~~v~~g 273 (350)
T cd08274 251 VG------GPLFPDLLRLLR-PGGRYVTAG 273 (350)
T ss_pred CC------HHHHHHHHHHhc-cCCEEEEec
Confidence 22 246788899999 999988654
No 425
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=82.04 E-value=5.9 Score=33.80 Aligned_cols=38 Identities=21% Similarity=-0.044 Sum_probs=28.7
Q ss_pred CeEEEEcCCcc--hhHHHHHhcCCcEEEEcCCHHHHHHHH
Q 024647 35 ELAWDVGTGSG--QAAASLSGIFENVIGTETSPKQIEFAT 72 (265)
Q Consensus 35 ~~vlDvGcG~G--~~~~~l~~~~~~v~~vD~s~~~~~~a~ 72 (265)
.+|.-||+|.- .++..++..+.+|+.+|++++.++.++
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~ 43 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAK 43 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHH
Confidence 45788899862 444456677789999999999887765
No 426
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=82.02 E-value=10 Score=32.30 Aligned_cols=94 Identities=17% Similarity=0.181 Sum_probs=55.9
Q ss_pred eEEEEcCCc-c-hhHHHHHhcCCcEEEEcCCHHHHHHHHcCCCceEEecCCcc---chhhhhhccCCCCceeEEEecccc
Q 024647 36 LAWDVGTGS-G-QAAASLSGIFENVIGTETSPKQIEFATKLPNIRYELTSPAM---SIAELEQNVAAQSTVDLVTIAQAM 110 (265)
Q Consensus 36 ~vlDvGcG~-G-~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~---~~~d~~~~~~~~~~~Dlv~~~~~~ 110 (265)
+|.=+|||. | .++..|++.+.+|+.++.+++.++..++. +.....+.... ...+.+. ...+|+|+...--
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~----~~~~d~vila~k~ 76 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNEN-GLRLEDGEITVPVLAADDPAE----LGPQDLVILAVKA 76 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHc-CCcccCCceeecccCCCChhH----cCCCCEEEEeccc
Confidence 578899986 3 45555677788999999988777766542 22220100000 0011111 1578999876431
Q ss_pred ccCChhHHHHHHHHHhcCCCcEEEEEe
Q 024647 111 HWFDLPQFYNQVKWVLKKPNGVIATWC 137 (265)
Q Consensus 111 ~~~~~~~~l~~~~~~Lk~pgG~l~~~~ 137 (265)
.+...+++.+...+. ++..++...
T Consensus 77 --~~~~~~~~~l~~~l~-~~~~iv~~~ 100 (304)
T PRK06522 77 --YQLPAALPSLAPLLG-PDTPVLFLQ 100 (304)
T ss_pred --ccHHHHHHHHhhhcC-CCCEEEEec
Confidence 245678888888888 776666533
No 427
>PLN02702 L-idonate 5-dehydrogenase
Probab=81.98 E-value=23 Score=31.11 Aligned_cols=100 Identities=11% Similarity=0.069 Sum_probs=59.5
Q ss_pred CCCCeEEEEcCCc-chhHHHHHhc-CC-cEEEEcCCHHHHHHHHcCCCceEEec-CC--ccchhhhhhcc-CCCCceeEE
Q 024647 32 TNHELAWDVGTGS-GQAAASLSGI-FE-NVIGTETSPKQIEFATKLPNIRYELT-SP--AMSIAELEQNV-AAQSTVDLV 104 (265)
Q Consensus 32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~-~~--~~~~~d~~~~~-~~~~~~Dlv 104 (265)
.++.+||-+|+|. |..+..+++. +. .|+++|.++...+.+++.. +..... .. ......+..+. ...+.+|+|
T Consensus 180 ~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v 258 (364)
T PLN02702 180 GPETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLSVAKQLG-ADEIVLVSTNIEDVESEVEEIQKAMGGGIDVS 258 (364)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhC-CCEEEecCcccccHHHHHHHHhhhcCCCCCEE
Confidence 4567788888764 6666666664 44 4889999988888777542 221110 00 00001111111 123468988
Q ss_pred EeccccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647 105 TIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCY 138 (265)
Q Consensus 105 ~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~ 138 (265)
+.. ......+.++.+.|+ ++|+++....
T Consensus 259 id~-----~g~~~~~~~~~~~l~-~~G~~v~~g~ 286 (364)
T PLN02702 259 FDC-----VGFNKTMSTALEATR-AGGKVCLVGM 286 (364)
T ss_pred EEC-----CCCHHHHHHHHHHHh-cCCEEEEEcc
Confidence 864 222457899999999 9999876543
No 428
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=81.93 E-value=26 Score=29.88 Aligned_cols=98 Identities=19% Similarity=0.177 Sum_probs=59.6
Q ss_pred CCCCeEEEEcC--CcchhHHHHHhc-CCcEEEEcCCHHHHHHHHcCCCceEEecCCcc-chhhhhhccCCCCceeEEEec
Q 024647 32 TNHELAWDVGT--GSGQAAASLSGI-FENVIGTETSPKQIEFATKLPNIRYELTSPAM-SIAELEQNVAAQSTVDLVTIA 107 (265)
Q Consensus 32 ~~~~~vlDvGc--G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~-~~~d~~~~~~~~~~~Dlv~~~ 107 (265)
.++.+||=.|+ +.|..+..+++. +.+++.+..++...+.+++..-..+....... ....+... .....+|+++..
T Consensus 139 ~~~~~vlI~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~i~~ 217 (334)
T PTZ00354 139 KKGQSVLIHAGASGVGTAAAQLAEKYGAATIITTSSEEKVDFCKKLAAIILIRYPDEEGFAPKVKKL-TGEKGVNLVLDC 217 (334)
T ss_pred CCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCcEEEecCChhHHHHHHHHH-hCCCCceEEEEC
Confidence 45677888874 347777777754 55777788889888888653221122111100 00111222 234569999864
Q ss_pred cccccCChhHHHHHHHHHhcCCCcEEEEEe
Q 024647 108 QAMHWFDLPQFYNQVKWVLKKPNGVIATWC 137 (265)
Q Consensus 108 ~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~ 137 (265)
.. ...+..+.+.|+ ++|.++...
T Consensus 218 ~~------~~~~~~~~~~l~-~~g~~i~~~ 240 (334)
T PTZ00354 218 VG------GSYLSETAEVLA-VDGKWIVYG 240 (334)
T ss_pred Cc------hHHHHHHHHHhc-cCCeEEEEe
Confidence 32 357788999999 999988654
No 429
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=81.54 E-value=29 Score=29.67 Aligned_cols=99 Identities=14% Similarity=0.086 Sum_probs=58.4
Q ss_pred CCCCeEEEEc-CC-cchhHHHHHhc-CCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEecc
Q 024647 32 TNHELAWDVG-TG-SGQAAASLSGI-FENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQ 108 (265)
Q Consensus 32 ~~~~~vlDvG-cG-~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~ 108 (265)
.++.+|+=.| +| .|..+..+++. +.++++++.++...+.+++..-..+...........+... .....+|+++...
T Consensus 139 ~~g~~vlI~g~~g~ig~~~~~lak~~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~d~vl~~~ 217 (327)
T PRK10754 139 KPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGSAQKAQRAKKAGAWQVINYREENIVERVKEI-TGGKKVRVVYDSV 217 (327)
T ss_pred CCCCEEEEEeCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHCCCCEEEcCCCCcHHHHHHHH-cCCCCeEEEEECC
Confidence 4556776665 33 47777777664 5689999999988887765421122221110000112222 2345689888532
Q ss_pred ccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647 109 AMHWFDLPQFYNQVKWVLKKPNGVIATWCY 138 (265)
Q Consensus 109 ~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~ 138 (265)
. ...+.++.+.|+ ++|+++....
T Consensus 218 ~------~~~~~~~~~~l~-~~g~~v~~g~ 240 (327)
T PRK10754 218 G------KDTWEASLDCLQ-RRGLMVSFGN 240 (327)
T ss_pred c------HHHHHHHHHHhc-cCCEEEEEcc
Confidence 1 246777889999 9999987553
No 430
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=81.03 E-value=15 Score=34.96 Aligned_cols=96 Identities=13% Similarity=0.022 Sum_probs=58.0
Q ss_pred CCeEEEEcCCc-chhH-HHHHhcCCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEeccccc
Q 024647 34 HELAWDVGTGS-GQAA-ASLSGIFENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMH 111 (265)
Q Consensus 34 ~~~vlDvGcG~-G~~~-~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~ 111 (265)
.++|+=+|+|. |... +.|.+++.+++.+|.+++.++.+++ .+.....+++... .-+++. .-+..|++++...
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~-~g~~v~~GDat~~-~~L~~a--gi~~A~~vv~~~~-- 473 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRK-YGYKVYYGDATQL-ELLRAA--GAEKAEAIVITCN-- 473 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh-CCCeEEEeeCCCH-HHHHhc--CCccCCEEEEEeC--
Confidence 35678787775 5433 3344566789999999999999986 4566677555210 112222 3346888887521
Q ss_pred cCChhH--HHHHHHHHhcCCCcEEEEEec
Q 024647 112 WFDLPQ--FYNQVKWVLKKPNGVIATWCY 138 (265)
Q Consensus 112 ~~~~~~--~l~~~~~~Lk~pgG~l~~~~~ 138 (265)
|.+. .+-...|.+. |+..++.-..
T Consensus 474 --d~~~n~~i~~~~r~~~-p~~~IiaRa~ 499 (601)
T PRK03659 474 --EPEDTMKIVELCQQHF-PHLHILARAR 499 (601)
T ss_pred --CHHHHHHHHHHHHHHC-CCCeEEEEeC
Confidence 3232 3334456677 7877776443
No 431
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=80.90 E-value=1.8 Score=37.34 Aligned_cols=38 Identities=13% Similarity=0.207 Sum_probs=29.9
Q ss_pred ceeEEEeccccccC---C---hhHHHHHHHHHhcCCCcEEEEEec
Q 024647 100 TVDLVTIAQAMHWF---D---LPQFYNQVKWVLKKPNGVIATWCY 138 (265)
Q Consensus 100 ~~Dlv~~~~~~~~~---~---~~~~l~~~~~~Lk~pgG~l~~~~~ 138 (265)
+.++|+..++++.+ . ..+++..+-..++ ||..|.+.+.
T Consensus 200 ~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~-~GslLLVvDS 243 (315)
T PF11312_consen 200 SPDLITLLFTLNELFSTSISKTTKFLLRLTDICP-PGSLLLVVDS 243 (315)
T ss_pred hhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcC-CCcEEEEEcC
Confidence 57899988887754 2 3479999999999 8998887654
No 432
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=80.61 E-value=1.2 Score=39.93 Aligned_cols=47 Identities=19% Similarity=0.205 Sum_probs=42.0
Q ss_pred HHhhCCCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHc
Q 024647 27 ITSKTTNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATK 73 (265)
Q Consensus 27 l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~ 73 (265)
+....+++..|-|+-||-|-++..++..++.|++-|.++++++..+.
T Consensus 243 lsg~fk~gevv~D~FaGvGPfa~Pa~kK~crV~aNDLNpesik~Lk~ 289 (495)
T KOG2078|consen 243 LSGLFKPGEVVCDVFAGVGPFALPAAKKGCRVYANDLNPESIKWLKA 289 (495)
T ss_pred HhhccCCcchhhhhhcCcCccccchhhcCcEEEecCCCHHHHHHHHH
Confidence 44456788999999999999999999999999999999999998874
No 433
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=80.33 E-value=1.9 Score=35.93 Aligned_cols=51 Identities=24% Similarity=0.252 Sum_probs=37.7
Q ss_pred HHHHHHHhhCC--CCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHH
Q 024647 22 ELFKFITSKTT--NHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFAT 72 (265)
Q Consensus 22 ~l~~~l~~~~~--~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~ 72 (265)
.++.+|.+..+ +..+++|.=||+|.++..+.....+|+.-|+++..+...+
T Consensus 7 ~l~~~I~~~ip~~~~~~~vepF~G~g~V~~~~~~~~~~vi~ND~~~~l~~~~~ 59 (260)
T PF02086_consen 7 KLAKWIIELIPKNKHKTYVEPFAGGGSVFLNLKQPGKRVIINDINPDLINFWK 59 (260)
T ss_dssp GGHHHHHHHS-S-S-SEEEETT-TTSHHHHCC---SSEEEEEES-HHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCEEEEEecchhHHHHHhcccccceeeeechHHHHHHHH
Confidence 46677777777 5789999999999999999888889999999998877665
No 434
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=80.11 E-value=6.1 Score=33.67 Aligned_cols=57 Identities=23% Similarity=0.329 Sum_probs=49.3
Q ss_pred CCCcHHHHHHHHhh-CCCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHc
Q 024647 17 PNYPEELFKFITSK-TTNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATK 73 (265)
Q Consensus 17 p~y~~~l~~~l~~~-~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~ 73 (265)
..+|.+++.++... ..+++.|||-=+|+|.........+..++|+|+++.-++.+.+
T Consensus 205 ~~~P~~l~~r~i~~~s~~~diVlDpf~GsGtt~~aa~~~~r~~ig~e~~~~y~~~~~~ 262 (302)
T COG0863 205 AQKPLALIERLIRDYSFPGDIVLDPFAGSGTTGIAAKNLGRRFIGIEINPEYVEVALK 262 (302)
T ss_pred CCChHHHHHHHHHhcCCCCCEEeecCCCCChHHHHHHHcCCceEEEecCHHHHHHHHH
Confidence 45688888887654 4678999999999999999999999999999999999998875
No 435
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=79.88 E-value=12 Score=31.86 Aligned_cols=87 Identities=18% Similarity=0.166 Sum_probs=52.7
Q ss_pred eEEEEcCCc--chhHHHHHhcCCcEEEEcCCHHHHHHHHc-----------CC------------CceEEecCCccchhh
Q 024647 36 LAWDVGTGS--GQAAASLSGIFENVIGTETSPKQIEFATK-----------LP------------NIRYELTSPAMSIAE 90 (265)
Q Consensus 36 ~vlDvGcG~--G~~~~~l~~~~~~v~~vD~s~~~~~~a~~-----------~~------------~~~~~~~~~~~~~~d 90 (265)
+|-=||+|. +.++..++..+.+|+++|++++.++.++. .. ++.+. .|
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~--------~~ 76 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGT--------TD 76 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe--------CC
Confidence 477789986 45566677778899999999999864331 11 11111 12
Q ss_pred hhhccCCCCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEE
Q 024647 91 LEQNVAAQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIAT 135 (265)
Q Consensus 91 ~~~~~~~~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~ 135 (265)
.+. -...|+|+..-.-...-...+++++.+.++ |+..++.
T Consensus 77 ~~~----~~~aDlVi~av~e~~~~k~~~~~~l~~~~~-~~~il~s 116 (282)
T PRK05808 77 LDD----LKDADLVIEAATENMDLKKKIFAQLDEIAK-PEAILAT 116 (282)
T ss_pred HHH----hccCCeeeecccccHHHHHHHHHHHHhhCC-CCcEEEE
Confidence 221 135788887521111112478888888888 7776643
No 436
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=79.35 E-value=34 Score=29.46 Aligned_cols=99 Identities=14% Similarity=0.137 Sum_probs=60.5
Q ss_pred CCCCeEEEEcCC--cchhHHHHHhc-CCcEEEEcCCHHHHHHHHcCCCceEE-ecCCccchhhhhhccCCCCceeEEEec
Q 024647 32 TNHELAWDVGTG--SGQAAASLSGI-FENVIGTETSPKQIEFATKLPNIRYE-LTSPAMSIAELEQNVAAQSTVDLVTIA 107 (265)
Q Consensus 32 ~~~~~vlDvGcG--~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~Dlv~~~ 107 (265)
.++.+||-.|+| .|..+..+++. +.+++++..++...+.++... +... ..........+..+ .+...+|+++..
T Consensus 164 ~~~~~vlV~g~~~~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g-~~~v~~~~~~~~~~~~~~~-~~~~~vd~vl~~ 241 (341)
T cd08297 164 KPGDWVVISGAGGGLGHLGVQYAKAMGLRVIAIDVGDEKLELAKELG-ADAFVDFKKSDDVEAVKEL-TGGGGAHAVVVT 241 (341)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcC-CcEEEcCCCccHHHHHHHH-hcCCCCCEEEEc
Confidence 456788888876 46777677665 568999999988777775532 2221 11100000112222 234569999842
Q ss_pred cccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647 108 QAMHWFDLPQFYNQVKWVLKKPNGVIATWCY 138 (265)
Q Consensus 108 ~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~ 138 (265)
. .....+.++.+.|+ ++|+++....
T Consensus 242 ~-----~~~~~~~~~~~~l~-~~g~~v~~g~ 266 (341)
T cd08297 242 A-----VSAAAYEQALDYLR-PGGTLVCVGL 266 (341)
T ss_pred C-----CchHHHHHHHHHhh-cCCEEEEecC
Confidence 1 11457888899999 9999987543
No 437
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=79.12 E-value=22 Score=30.83 Aligned_cols=113 Identities=17% Similarity=0.155 Sum_probs=64.6
Q ss_pred CeEEEEcCCc--chhHHHHHhcCCcEEEEcCCHHHHHHHHcCCCceEEecCCccch-hhhhhccCCCCceeEEEeccccc
Q 024647 35 ELAWDVGTGS--GQAAASLSGIFENVIGTETSPKQIEFATKLPNIRYELTSPAMSI-AELEQNVAAQSTVDLVTIAQAMH 111 (265)
Q Consensus 35 ~~vlDvGcG~--G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~Dlv~~~~~~~ 111 (265)
++|+-+|||. |.++..|++.+..|+.+--++. ++..++. ++.......+... ......+.....+|+|+..-=-
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~-~~~l~~~-GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~vKa- 77 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRR-LEALKKK-GLRIEDEGGNFTTPVVAATDAEALGPADLVIVTVKA- 77 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH-HHHHHhC-CeEEecCCCccccccccccChhhcCCCCEEEEEecc-
Confidence 4688899996 5677778888856666666665 6666652 3333322110000 0000011122479999986311
Q ss_pred cCChhHHHHHHHHHhcCCCcEEEEEecCCCCCChHHHHhhcc
Q 024647 112 WFDLPQFYNQVKWVLKKPNGVIATWCYTVPEVNVSVDAVFQP 153 (265)
Q Consensus 112 ~~~~~~~l~~~~~~Lk~pgG~l~~~~~~~~~~~~~~~~~~~~ 153 (265)
.+...+++.+...++ ++..+++.-.+-... +.+.+.+.+
T Consensus 78 -~q~~~al~~l~~~~~-~~t~vl~lqNG~g~~-e~l~~~~~~ 116 (307)
T COG1893 78 -YQLEEALPSLAPLLG-PNTVVLFLQNGLGHE-EELRKILPK 116 (307)
T ss_pred -ccHHHHHHHhhhcCC-CCcEEEEEeCCCcHH-HHHHHhCCc
Confidence 255789999999999 888777655443332 345555433
No 438
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=79.12 E-value=38 Score=28.84 Aligned_cols=98 Identities=20% Similarity=0.143 Sum_probs=57.2
Q ss_pred CCCCeEEEEcCC--cchhHHHHHh-cCCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEecc
Q 024647 32 TNHELAWDVGTG--SGQAAASLSG-IFENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQ 108 (265)
Q Consensus 32 ~~~~~vlDvGcG--~G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~ 108 (265)
.++.++|-.|++ .|.....++. .+.+++.++.++...+.++..................+... .....+|+++...
T Consensus 165 ~~~~~vlI~g~~~~iG~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~i~~~ 243 (342)
T cd08266 165 RPGETVLVHGAGSGVGSAAIQIAKLFGATVIATAGSEDKLERAKELGADYVIDYRKEDFVREVREL-TGKRGVDVVVEHV 243 (342)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCeEEecCChHHHHHHHHH-hCCCCCcEEEECC
Confidence 456778888875 3555555554 45689999999887777754321111111100000111222 1334689998653
Q ss_pred ccccCChhHHHHHHHHHhcCCCcEEEEEe
Q 024647 109 AMHWFDLPQFYNQVKWVLKKPNGVIATWC 137 (265)
Q Consensus 109 ~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~ 137 (265)
. ...+..+.+.|+ ++|.++...
T Consensus 244 g------~~~~~~~~~~l~-~~G~~v~~~ 265 (342)
T cd08266 244 G------AATWEKSLKSLA-RGGRLVTCG 265 (342)
T ss_pred c------HHHHHHHHHHhh-cCCEEEEEe
Confidence 3 245777889999 899988654
No 439
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=78.89 E-value=24 Score=30.11 Aligned_cols=93 Identities=19% Similarity=0.173 Sum_probs=54.0
Q ss_pred eEEEEcCCc-c-hhHHHHHhcCCcEEEEcCCHHHHHHHHcCCCceEEecCCcc-----chhhhhhccCCCCceeEEEecc
Q 024647 36 LAWDVGTGS-G-QAAASLSGIFENVIGTETSPKQIEFATKLPNIRYELTSPAM-----SIAELEQNVAAQSTVDLVTIAQ 108 (265)
Q Consensus 36 ~vlDvGcG~-G-~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~-----~~~d~~~~~~~~~~~Dlv~~~~ 108 (265)
+|+=+|+|. | .++..|++.+.+|+.++. ++.++..++. ++......... ...+.+. ....+|+|+...
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~---~~~~~d~vilav 76 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALRER-GLVIRSDHGDAVVPGPVITDPEE---LTGPFDLVILAV 76 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHHhC-CeEEEeCCCeEEecceeecCHHH---ccCCCCEEEEEe
Confidence 578889997 3 355567777889999998 6666665542 22222111000 0011111 125689888754
Q ss_pred ccccCChhHHHHHHHHHhcCCCcEEEEE
Q 024647 109 AMHWFDLPQFYNQVKWVLKKPNGVIATW 136 (265)
Q Consensus 109 ~~~~~~~~~~l~~~~~~Lk~pgG~l~~~ 136 (265)
-- .....+++++...+. ++..++..
T Consensus 77 k~--~~~~~~~~~l~~~~~-~~~~ii~~ 101 (305)
T PRK12921 77 KA--YQLDAAIPDLKPLVG-EDTVIIPL 101 (305)
T ss_pred cc--cCHHHHHHHHHhhcC-CCCEEEEe
Confidence 21 245678888888888 77665543
No 440
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=78.39 E-value=4.5 Score=32.19 Aligned_cols=39 Identities=26% Similarity=0.294 Sum_probs=25.5
Q ss_pred CeEEEEcCCc-c-hhHHHHHhcCCcEEEEcCCHHHHHHHHc
Q 024647 35 ELAWDVGTGS-G-QAAASLSGIFENVIGTETSPKQIEFATK 73 (265)
Q Consensus 35 ~~vlDvGcG~-G-~~~~~l~~~~~~v~~vD~s~~~~~~a~~ 73 (265)
++|--+|.|- | .++..+++.+.+|+|+|+++.-++..++
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~ 41 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNN 41 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHT
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhh
Confidence 3566677775 4 3344467788999999999999998875
No 441
>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=78.20 E-value=37 Score=28.68 Aligned_cols=99 Identities=16% Similarity=0.140 Sum_probs=57.1
Q ss_pred CCCCeEEEEcCC--cchhHHHHHh-cCCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEecc
Q 024647 32 TNHELAWDVGTG--SGQAAASLSG-IFENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQ 108 (265)
Q Consensus 32 ~~~~~vlDvGcG--~G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~ 108 (265)
.++.+++-.|+. .|..+..+++ .+.+++.++.++...+.++..................+... .....+|+++...
T Consensus 143 ~~~~~vli~g~~~~~g~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~d~vi~~~ 221 (328)
T cd08268 143 RPGDSVLITAASSSVGLAAIQIANAAGATVIATTRTSEKRDALLALGAAHVIVTDEEDLVAEVLRI-TGGKGVDVVFDPV 221 (328)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHcCCCEEEecCCccHHHHHHHH-hCCCCceEEEECC
Confidence 456788888873 3445544444 46689999998887777654321112221110011112222 1334689998653
Q ss_pred ccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647 109 AMHWFDLPQFYNQVKWVLKKPNGVIATWCY 138 (265)
Q Consensus 109 ~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~ 138 (265)
. .....++.+.++ ++|+++....
T Consensus 222 ~------~~~~~~~~~~l~-~~g~~v~~g~ 244 (328)
T cd08268 222 G------GPQFAKLADALA-PGGTLVVYGA 244 (328)
T ss_pred c------hHhHHHHHHhhc-cCCEEEEEEe
Confidence 2 145677788999 8999986543
No 442
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=77.98 E-value=34 Score=27.65 Aligned_cols=102 Identities=12% Similarity=-0.004 Sum_probs=55.8
Q ss_pred CCeEEEEcCCcchhHHH----HHhcCCcEEEEcCCHHHHHHHH----cCCCceEEecCCccchhhhhh----ccCCCCce
Q 024647 34 HELAWDVGTGSGQAAAS----LSGIFENVIGTETSPKQIEFAT----KLPNIRYELTSPAMSIAELEQ----NVAAQSTV 101 (265)
Q Consensus 34 ~~~vlDvGcG~G~~~~~----l~~~~~~v~~vD~s~~~~~~a~----~~~~~~~~~~~~~~~~~d~~~----~~~~~~~~ 101 (265)
+++||-.|++. .++.. +++.+.+|++++.++.-++.+. ...++.+...+.... .+++. ....-+.+
T Consensus 5 ~~~vlItGa~g-~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~-~~~~~~~~~~~~~~~~i 82 (238)
T PRK05786 5 GKKVAIIGVSE-GLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKYGNIHYVVGDVSST-ESARNVIEKAAKVLNAI 82 (238)
T ss_pred CcEEEEECCCc-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEECCCCCH-HHHHHHHHHHHHHhCCC
Confidence 46788888864 33333 4456778999999887665442 123566666544221 11111 11011357
Q ss_pred eEEEeccccccCC------------------hhHHHHHHHHHhcCCCcEEEEEec
Q 024647 102 DLVTIAQAMHWFD------------------LPQFYNQVKWVLKKPNGVIATWCY 138 (265)
Q Consensus 102 Dlv~~~~~~~~~~------------------~~~~l~~~~~~Lk~pgG~l~~~~~ 138 (265)
|.++.+....+.+ +..+++.+...++ .+|.+++...
T Consensus 83 d~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~-~~~~iv~~ss 136 (238)
T PRK05786 83 DGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLK-EGSSIVLVSS 136 (238)
T ss_pred CEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHh-cCCEEEEEec
Confidence 8887665432211 1134556667778 7888776443
No 443
>PLN02494 adenosylhomocysteinase
Probab=77.45 E-value=24 Score=32.49 Aligned_cols=100 Identities=18% Similarity=0.127 Sum_probs=59.8
Q ss_pred CCCCeEEEEcCCc-chhHHHHHh-cCCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEeccc
Q 024647 32 TNHELAWDVGTGS-GQAAASLSG-IFENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQA 109 (265)
Q Consensus 32 ~~~~~vlDvGcG~-G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~ 109 (265)
..+++|+-+|+|. |......++ .+.+|+++|.++.....+.. .+..... +++. . ...|+|+....
T Consensus 252 LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~-~G~~vv~---------leEa-l--~~ADVVI~tTG 318 (477)
T PLN02494 252 IAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALM-EGYQVLT---------LEDV-V--SEADIFVTTTG 318 (477)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHh-cCCeecc---------HHHH-H--hhCCEEEECCC
Confidence 3578899999997 655554444 45789999999876545543 2222211 1221 1 24699987422
Q ss_pred cccCChhHHHHHHHHHhcCCCcEEEEEecCCCCC-ChHHHH
Q 024647 110 MHWFDLPQFYNQVKWVLKKPNGVIATWCYTVPEV-NVSVDA 149 (265)
Q Consensus 110 ~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~~~~~~-~~~~~~ 149 (265)
...-+..+....+| +||+|+-....+..+ ...+.+
T Consensus 319 ----t~~vI~~e~L~~MK-~GAiLiNvGr~~~eID~~aL~~ 354 (477)
T PLN02494 319 ----NKDIIMVDHMRKMK-NNAIVCNIGHFDNEIDMLGLET 354 (477)
T ss_pred ----CccchHHHHHhcCC-CCCEEEEcCCCCCccCHHHHhh
Confidence 11223477888999 999998765543333 344443
No 444
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=77.40 E-value=3.7 Score=33.64 Aligned_cols=39 Identities=15% Similarity=0.253 Sum_probs=31.6
Q ss_pred CCCeEEEEcCCcchhHHHHHhcCC-cEEEEcCCHHHHHHH
Q 024647 33 NHELAWDVGTGSGQAAASLSGIFE-NVIGTETSPKQIEFA 71 (265)
Q Consensus 33 ~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a 71 (265)
...-|.+||.|+|..|+.+.+.+. ++..|+++...+.-.
T Consensus 50 ~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~L 89 (326)
T KOG0821|consen 50 TNAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGL 89 (326)
T ss_pred ccceeEEecCCCCchhHHHHhcchhheeeeeeccccChHH
Confidence 346789999999999999998865 688888887765543
No 445
>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein. This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.
Probab=77.27 E-value=13 Score=31.22 Aligned_cols=108 Identities=15% Similarity=0.151 Sum_probs=51.4
Q ss_pred CCCCeEEEEcCCc--ch--hHHHHHhcCC---cEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEE
Q 024647 32 TNHELAWDVGTGS--GQ--AAASLSGIFE---NVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLV 104 (265)
Q Consensus 32 ~~~~~vlDvGcG~--G~--~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv 104 (265)
|..++||.+|+|+ |. -+.-|.+.++ -++-.|+.+-. .. .+..+ . +|-.... ++..+|+|
T Consensus 60 P~nMrVlHlGAgSdkGvaPGt~VLrqwlP~~ailvDnDi~d~v----SD-a~~~~-~-------~Dc~t~~-~~~k~DlI 125 (299)
T PF06460_consen 60 PHNMRVLHLGAGSDKGVAPGTAVLRQWLPEDAILVDNDIRDYV----SD-ADQSI-V-------GDCRTYM-PPDKFDLI 125 (299)
T ss_dssp -TT-EEEEES---TTSB-HHHHHHHHHS-TT-EEEEEESS--B-----S-SSEEE-E-------S-GGGEE-ESS-EEEE
T ss_pred ccCcEEEEecccccCCcCCchHHHHHhCCCCcEEEecchhhhc----cc-cCCce-e-------ccccccC-CCCcccEE
Confidence 5679999999996 31 1223444454 36666664431 11 12222 2 4444443 45789999
Q ss_pred Eeccc---cccC-----ChhHH----HHHHHHHhcCCCcEEEEEecCCCCCChHHHHhhcccc
Q 024647 105 TIAQA---MHWF-----DLPQF----YNQVKWVLKKPNGVIATWCYTVPEVNVSVDAVFQPFY 155 (265)
Q Consensus 105 ~~~~~---~~~~-----~~~~~----l~~~~~~Lk~pgG~l~~~~~~~~~~~~~~~~~~~~~~ 155 (265)
++... .+.+ +.+.+ ..-+..-|+ -||.+++-. ....++.++.++.+.|.
T Consensus 126 iSDmYd~~~k~~~~~n~~~~~fF~yl~~~i~~kLa-LGGSvaiKi-TE~Sw~~~Lyel~~~F~ 186 (299)
T PF06460_consen 126 ISDMYDGRTKNCDGENNSKEGFFTYLCGFIKEKLA-LGGSVAIKI-TEHSWNAQLYELMGYFS 186 (299)
T ss_dssp EE----TTS-SS-S------THHHHHHHHHHHHEE-EEEEEEEEE--SSS--HHHHHHHTTEE
T ss_pred EEecccccccccccccCCccccHHHHHHHHHhhhh-cCceEEEEe-ecccccHHHHHHHhhcc
Confidence 99764 2222 12233 344567788 899998733 23345788888777664
No 446
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=77.25 E-value=42 Score=28.78 Aligned_cols=94 Identities=21% Similarity=0.220 Sum_probs=59.0
Q ss_pred CCeEEEEcC--CcchhHHHHHhc--CCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEeccc
Q 024647 34 HELAWDVGT--GSGQAAASLSGI--FENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQA 109 (265)
Q Consensus 34 ~~~vlDvGc--G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~ 109 (265)
+.+||-.|+ +.|..+..+++. +.+|+++..+++..+.+++.. ++............+... ..+.+|+|+..
T Consensus 149 g~~vlV~ga~g~vg~~~~~~ak~~~G~~vi~~~~~~~~~~~l~~~g-~~~~~~~~~~~~~~i~~~--~~~~vd~vl~~-- 223 (336)
T TIGR02817 149 KRALLIIGGAGGVGSILIQLARQLTGLTVIATASRPESQEWVLELG-AHHVIDHSKPLKAQLEKL--GLEAVSYVFSL-- 223 (336)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHHHHcC-CCEEEECCCCHHHHHHHh--cCCCCCEEEEc--
Confidence 678888875 347777777774 678999998888888776542 222211011111222322 34468988853
Q ss_pred cccCChhHHHHHHHHHhcCCCcEEEEE
Q 024647 110 MHWFDLPQFYNQVKWVLKKPNGVIATW 136 (265)
Q Consensus 110 ~~~~~~~~~l~~~~~~Lk~pgG~l~~~ 136 (265)
......+.++.+.|+ ++|+++..
T Consensus 224 ---~~~~~~~~~~~~~l~-~~G~~v~~ 246 (336)
T TIGR02817 224 ---THTDQHFKEIVELLA-PQGRFALI 246 (336)
T ss_pred ---CCcHHHHHHHHHHhc-cCCEEEEE
Confidence 112457888999999 99998854
No 447
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=77.14 E-value=18 Score=31.29 Aligned_cols=67 Identities=19% Similarity=0.169 Sum_probs=39.8
Q ss_pred CCCeEEEEcCCc-chhHHHH-HhcC-CcEEEEcCCHHHH-HHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEecc
Q 024647 33 NHELAWDVGTGS-GQAAASL-SGIF-ENVIGTETSPKQI-EFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQ 108 (265)
Q Consensus 33 ~~~~vlDvGcG~-G~~~~~l-~~~~-~~v~~vD~s~~~~-~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~ 108 (265)
++.+|+-+|||. |...... ...+ .+|+.+|.++.-. +.++++.. .... . .+..+. -...|+|++..
T Consensus 177 ~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~-~~~~--~----~~~~~~---l~~aDvVi~at 246 (311)
T cd05213 177 KGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGG-NAVP--L----DELLEL---LNEADVVISAT 246 (311)
T ss_pred cCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCC-eEEe--H----HHHHHH---HhcCCEEEECC
Confidence 568899999986 5544433 3334 4699999998755 45554432 2221 1 233322 13479999875
Q ss_pred c
Q 024647 109 A 109 (265)
Q Consensus 109 ~ 109 (265)
.
T Consensus 247 ~ 247 (311)
T cd05213 247 G 247 (311)
T ss_pred C
Confidence 4
No 448
>PF05575 V_cholerae_RfbT: Vibrio cholerae RfbT protein; InterPro: IPR008890 This family consists of several RfbT proteins from Vibrio cholerae. It has been found that genetic alteration of the rfbT gene is responsible for serotype conversion of V. cholerae O1 [] and determines the difference between the Ogawa and Inaba serotypes, in that the presence of rfbT is sufficient for Inaba-to-Ogawa serotype conversion [].
Probab=77.05 E-value=4.6 Score=31.53 Aligned_cols=57 Identities=14% Similarity=0.215 Sum_probs=47.4
Q ss_pred CCCCcHHHHHHHHhhCCCCCeEEEEcCCcchhHHHHHhcC--CcEEEEcCCHHHHHHHH
Q 024647 16 RPNYPEELFKFITSKTTNHELAWDVGTGSGQAAASLSGIF--ENVIGTETSPKQIEFAT 72 (265)
Q Consensus 16 rp~y~~~l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~ 72 (265)
.|.|.-.+..|+..+++.+.+.+|+|+..|.+.--.+++. .+++++++-.+|-...+
T Consensus 62 npnfdlgmrhwivnhckhdttyidiganvgtfcgiaarhitqgkiiaiepltemensir 120 (286)
T PF05575_consen 62 NPNFDLGMRHWIVNHCKHDTTYIDIGANVGTFCGIAARHITQGKIIAIEPLTEMENSIR 120 (286)
T ss_pred CCCCccchhHhhhhhccCCceEEEeccccccchhhhhhhcccCceEEEechhhhhhhee
Confidence 4777778899999999998999999999998877766664 57999999888866554
No 449
>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=76.98 E-value=45 Score=28.42 Aligned_cols=99 Identities=21% Similarity=0.125 Sum_probs=56.8
Q ss_pred CCCCeEEEEcCCc-chhHHHHHhc-CCcEEEEcCCHHHHHHHHcCCCceEEecCC-ccchhhhhhccCCCCceeEEEecc
Q 024647 32 TNHELAWDVGTGS-GQAAASLSGI-FENVIGTETSPKQIEFATKLPNIRYELTSP-AMSIAELEQNVAAQSTVDLVTIAQ 108 (265)
Q Consensus 32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~-~~~~~d~~~~~~~~~~~Dlv~~~~ 108 (265)
.++.+|+=.|+|. |..+..+++. +.+++.++.++...+.+............. ......+... .....+|+++...
T Consensus 159 ~~g~~vli~g~g~~g~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~i~~~ 237 (336)
T cd08276 159 KPGDTVLVQGTGGVSLFALQFAKAAGARVIATSSSDEKLERAKALGADHVINYRTTPDWGEEVLKL-TGGRGVDHVVEVG 237 (336)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEcCCcccCHHHHHHHH-cCCCCCcEEEECC
Confidence 4556666556543 4555555543 568999999988888776542111111110 0000112222 2345689998642
Q ss_pred ccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647 109 AMHWFDLPQFYNQVKWVLKKPNGVIATWCY 138 (265)
Q Consensus 109 ~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~ 138 (265)
. ...+..+.+.|+ ++|+++....
T Consensus 238 -----~-~~~~~~~~~~l~-~~G~~v~~g~ 260 (336)
T cd08276 238 -----G-PGTLAQSIKAVA-PGGVISLIGF 260 (336)
T ss_pred -----C-hHHHHHHHHhhc-CCCEEEEEcc
Confidence 1 356788899999 9999886554
No 450
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=76.75 E-value=43 Score=27.97 Aligned_cols=94 Identities=20% Similarity=0.187 Sum_probs=54.7
Q ss_pred CCCCeEEEEcC-C-cchhHHHHHhc-CCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEecc
Q 024647 32 TNHELAWDVGT-G-SGQAAASLSGI-FENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQ 108 (265)
Q Consensus 32 ~~~~~vlDvGc-G-~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~ 108 (265)
.++.+||=.|+ | .|..+..+++. +.++++++.++ ..+.++...-........ .+... ......+|+++...
T Consensus 143 ~~~~~vlv~g~~g~~g~~~~~~a~~~g~~v~~~~~~~-~~~~~~~~g~~~~~~~~~----~~~~~-~~~~~~~d~v~~~~ 216 (309)
T cd05289 143 KAGQTVLIHGAAGGVGSFAVQLAKARGARVIATASAA-NADFLRSLGADEVIDYTK----GDFER-AAAPGGVDAVLDTV 216 (309)
T ss_pred CCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEecch-hHHHHHHcCCCEEEeCCC----Cchhh-ccCCCCceEEEECC
Confidence 45678888886 3 36666665554 56788877666 566665432112222110 11111 12345688888642
Q ss_pred ccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647 109 AMHWFDLPQFYNQVKWVLKKPNGVIATWCY 138 (265)
Q Consensus 109 ~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~ 138 (265)
. ......+.+.|+ ++|.++....
T Consensus 217 ~------~~~~~~~~~~l~-~~g~~v~~g~ 239 (309)
T cd05289 217 G------GETLARSLALVK-PGGRLVSIAG 239 (309)
T ss_pred c------hHHHHHHHHHHh-cCcEEEEEcC
Confidence 2 237788889999 8999886543
No 451
>PLN02256 arogenate dehydrogenase
Probab=76.64 E-value=24 Score=30.50 Aligned_cols=99 Identities=15% Similarity=0.164 Sum_probs=53.2
Q ss_pred CCcHHHHHHHHhhCCCCCeEEEEcCCc--chhHHHHHhcCCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhcc
Q 024647 18 NYPEELFKFITSKTTNHELAWDVGTGS--GQAAASLSGIFENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNV 95 (265)
Q Consensus 18 ~y~~~l~~~l~~~~~~~~~vlDvGcG~--G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~ 95 (265)
.|...+.+.+.. ....+|.=||+|. |.++..+.+.+.+|+++|.++. .+.+... ++... .+.+++.
T Consensus 22 ~~~~~~~~~~~~--~~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~-~~~a~~~-gv~~~--------~~~~e~~ 89 (304)
T PLN02256 22 DYESRLQEELEK--SRKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDY-SDIAAEL-GVSFF--------RDPDDFC 89 (304)
T ss_pred ChHhHHhHhhcc--CCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccH-HHHHHHc-CCeee--------CCHHHHh
Confidence 454444444422 3456788899885 3455556666668999999974 3444432 33221 2223221
Q ss_pred CCCCceeEEEeccccccCChhHHHHHH-HHHhcCCCcEE
Q 024647 96 AAQSTVDLVTIAQAMHWFDLPQFYNQV-KWVLKKPNGVI 133 (265)
Q Consensus 96 ~~~~~~Dlv~~~~~~~~~~~~~~l~~~-~~~Lk~pgG~l 133 (265)
....|+|+..-... ....+++++ ...++ ++..+
T Consensus 90 --~~~aDvVilavp~~--~~~~vl~~l~~~~l~-~~~iv 123 (304)
T PLN02256 90 --EEHPDVVLLCTSIL--STEAVLRSLPLQRLK-RSTLF 123 (304)
T ss_pred --hCCCCEEEEecCHH--HHHHHHHhhhhhccC-CCCEE
Confidence 12469888753211 223455555 34466 66543
No 452
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=76.27 E-value=17 Score=31.33 Aligned_cols=99 Identities=13% Similarity=0.038 Sum_probs=55.1
Q ss_pred CCeEEEEcCCc--chhHHHHHhcCCcEEEEcCCHHHHHHHHcCCCceEEecCCccchh--hhhhccCCCCceeEEEeccc
Q 024647 34 HELAWDVGTGS--GQAAASLSGIFENVIGTETSPKQIEFATKLPNIRYELTSPAMSIA--ELEQNVAAQSTVDLVTIAQA 109 (265)
Q Consensus 34 ~~~vlDvGcG~--G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~--d~~~~~~~~~~~Dlv~~~~~ 109 (265)
.++|+=+|+|. |.++..|++.+.+|+.+..++. +..++ .++............ .....+...+.+|+|+..--
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~~--~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vilavK 81 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSDY--EAVRE-NGLQVDSVHGDFHLPPVQAYRSAEDMPPCDWVLVGLK 81 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCH--HHHHh-CCeEEEeCCCCeeecCceEEcchhhcCCCCEEEEEec
Confidence 36799999996 5667777788888888877652 22222 222221111000000 00001012357899987632
Q ss_pred cccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647 110 MHWFDLPQFYNQVKWVLKKPNGVIATWCY 138 (265)
Q Consensus 110 ~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~ 138 (265)
. .+...+++.+...++ +++.++....
T Consensus 82 ~--~~~~~~~~~l~~~~~-~~~~iv~lqN 107 (313)
T PRK06249 82 T--TANALLAPLIPQVAA-PDAKVLLLQN 107 (313)
T ss_pred C--CChHhHHHHHhhhcC-CCCEEEEecC
Confidence 2 234567888888899 8988765443
No 453
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=76.08 E-value=16 Score=31.21 Aligned_cols=38 Identities=16% Similarity=0.057 Sum_probs=29.0
Q ss_pred CeEEEEcCCcc--hhHHHHHhcCCcEEEEcCCHHHHHHHH
Q 024647 35 ELAWDVGTGSG--QAAASLSGIFENVIGTETSPKQIEFAT 72 (265)
Q Consensus 35 ~~vlDvGcG~G--~~~~~l~~~~~~v~~vD~s~~~~~~a~ 72 (265)
.+|.=||+|.- .++..++..+.+|+..|.+++.++.+.
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 44 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGL 44 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH
Confidence 45788899863 455556777889999999999887643
No 454
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=75.94 E-value=4 Score=31.13 Aligned_cols=35 Identities=23% Similarity=0.268 Sum_probs=21.5
Q ss_pred EEcCCcc--hhHHHHH--hc--CCcEEEEcCCHHHHHHHHc
Q 024647 39 DVGTGSG--QAAASLS--GI--FENVIGTETSPKQIEFATK 73 (265)
Q Consensus 39 DvGcG~G--~~~~~l~--~~--~~~v~~vD~s~~~~~~a~~ 73 (265)
|||+..| ..+..+. .. ..+|+++|++|...+..+.
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~ 41 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKR 41 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhH
Confidence 8999999 5555543 22 3469999999998876553
No 455
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=75.71 E-value=36 Score=28.05 Aligned_cols=87 Identities=13% Similarity=-0.006 Sum_probs=53.5
Q ss_pred CCCeEEEEcCCcchhHH--HHHhcCCcEEEE--cCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEecc
Q 024647 33 NHELAWDVGTGSGQAAA--SLSGIFENVIGT--ETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQ 108 (265)
Q Consensus 33 ~~~~vlDvGcG~G~~~~--~l~~~~~~v~~v--D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~ 108 (265)
++.+||-||.|.-..-+ .|.+.+++|+.| ++++++.+.++. .++.+..... ..+| + ..+++|+++
T Consensus 24 ~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~~l~~~-~~i~~~~r~~--~~~d-----l--~g~~LViaA- 92 (223)
T PRK05562 24 NKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFLDLKKY-GNLKLIKGNY--DKEF-----I--KDKHLIVIA- 92 (223)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHHHHHhC-CCEEEEeCCC--ChHH-----h--CCCcEEEEC-
Confidence 56789999999865443 355677876655 888887766553 5677776432 1122 1 247888886
Q ss_pred ccccCChhHHHHHHHHHhcCCCcEEEE
Q 024647 109 AMHWFDLPQFYNQVKWVLKKPNGVIAT 135 (265)
Q Consensus 109 ~~~~~~~~~~l~~~~~~Lk~pgG~l~~ 135 (265)
.|-+.+=+.+...-+ .-|.++.
T Consensus 93 ----TdD~~vN~~I~~~a~-~~~~lvn 114 (223)
T PRK05562 93 ----TDDEKLNNKIRKHCD-RLYKLYI 114 (223)
T ss_pred ----CCCHHHHHHHHHHHH-HcCCeEE
Confidence 344455555555555 4455443
No 456
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=75.08 E-value=22 Score=25.41 Aligned_cols=89 Identities=20% Similarity=0.127 Sum_probs=52.9
Q ss_pred eEEEEcCCcc-hhHH-HHHhcCC--cEE-EEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEecccc
Q 024647 36 LAWDVGTGSG-QAAA-SLSGIFE--NVI-GTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAM 110 (265)
Q Consensus 36 ~vlDvGcG~G-~~~~-~l~~~~~--~v~-~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~ 110 (265)
+|.=||+|.. ..-. .+.+..+ +++ .+|+++...+.+.+..++.. . .|++++. .+..+|+|+...
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~~-~-------~~~~~ll-~~~~~D~V~I~t-- 70 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIPV-Y-------TDLEELL-ADEDVDAVIIAT-- 70 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSEE-E-------SSHHHHH-HHTTESEEEEES--
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhcccc-h-------hHHHHHH-HhhcCCEEEEec--
Confidence 4677899764 2222 2333333 454 56999998887654345552 3 3445442 334799999763
Q ss_pred ccCChhHHHHHHHHHhcCCCcEEEEEecC
Q 024647 111 HWFDLPQFYNQVKWVLKKPNGVIATWCYT 139 (265)
Q Consensus 111 ~~~~~~~~l~~~~~~Lk~pgG~l~~~~~~ 139 (265)
....-..-+...|+ -|-.+++.-+-
T Consensus 71 ---p~~~h~~~~~~~l~-~g~~v~~EKP~ 95 (120)
T PF01408_consen 71 ---PPSSHAEIAKKALE-AGKHVLVEKPL 95 (120)
T ss_dssp ---SGGGHHHHHHHHHH-TTSEEEEESSS
T ss_pred ---CCcchHHHHHHHHH-cCCEEEEEcCC
Confidence 33456667777777 57666665443
No 457
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=74.96 E-value=16 Score=31.25 Aligned_cols=88 Identities=24% Similarity=0.230 Sum_probs=54.9
Q ss_pred CeEEEEcCCc--chhHHHHHhcCCc--EEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEecccc
Q 024647 35 ELAWDVGTGS--GQAAASLSGIFEN--VIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAM 110 (265)
Q Consensus 35 ~~vlDvGcG~--G~~~~~l~~~~~~--v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~ 110 (265)
.+|+=+|.|- |.+++.+.+.+.. +++.|.+...++.+..+. +..... .+... ......|+|+.+-.+
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lg-v~d~~~------~~~~~--~~~~~aD~VivavPi 74 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELG-VIDELT------VAGLA--EAAAEADLVIVAVPI 74 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcC-cccccc------cchhh--hhcccCCEEEEeccH
Confidence 5678888885 6677777777764 799999999888887642 222211 01101 123458999987432
Q ss_pred ccCChhHHHHHHHHHhcCCCcEEE
Q 024647 111 HWFDLPQFYNQVKWVLKKPNGVIA 134 (265)
Q Consensus 111 ~~~~~~~~l~~~~~~Lk~pgG~l~ 134 (265)
. ....+++++...|+ +|..+.
T Consensus 75 ~--~~~~~l~~l~~~l~-~g~iv~ 95 (279)
T COG0287 75 E--ATEEVLKELAPHLK-KGAIVT 95 (279)
T ss_pred H--HHHHHHHHhcccCC-CCCEEE
Confidence 2 23467777777787 665554
No 458
>PRK12742 oxidoreductase; Provisional
Probab=74.64 E-value=42 Score=27.04 Aligned_cols=102 Identities=15% Similarity=0.056 Sum_probs=50.1
Q ss_pred CCeEEEEcCCcc---hhHHHHHhcCCcEEEEcC-CHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEeccc
Q 024647 34 HELAWDVGTGSG---QAAASLSGIFENVIGTET-SPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQA 109 (265)
Q Consensus 34 ~~~vlDvGcG~G---~~~~~l~~~~~~v~~vD~-s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~ 109 (265)
++++|-.|++.| .++..|++.+.+|+.+.. +++..+......++.+...+.... ..+.......+.+|+++.+..
T Consensus 6 ~k~vlItGasggIG~~~a~~l~~~G~~v~~~~~~~~~~~~~l~~~~~~~~~~~D~~~~-~~~~~~~~~~~~id~li~~ag 84 (237)
T PRK12742 6 GKKVLVLGGSRGIGAAIVRRFVTDGANVRFTYAGSKDAAERLAQETGATAVQTDSADR-DAVIDVVRKSGALDILVVNAG 84 (237)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHhCCeEEecCCCCH-HHHHHHHHHhCCCcEEEECCC
Confidence 467888887443 233334556678877654 444444332212344544443211 111111112246898887654
Q ss_pred cccC------Chh--------------HHHHHHHHHhcCCCcEEEEEe
Q 024647 110 MHWF------DLP--------------QFYNQVKWVLKKPNGVIATWC 137 (265)
Q Consensus 110 ~~~~------~~~--------------~~l~~~~~~Lk~pgG~l~~~~ 137 (265)
.... ++. .+++++.+.++ .+|.+++..
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~g~iv~is 131 (237)
T PRK12742 85 IAVFGDALELDADDIDRLFKINIHAPYHASVEAARQMP-EGGRIIIIG 131 (237)
T ss_pred CCCCCCcccCCHHHHHHHHhHHHHHHHHHHHHHHHHHh-cCCeEEEEe
Confidence 3211 111 23356667777 688877643
No 459
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=74.60 E-value=11 Score=33.00 Aligned_cols=95 Identities=13% Similarity=0.113 Sum_probs=52.9
Q ss_pred CeEEEEcCCc--chhHHHHHhcCCcEEEEcCCHHHHHHHHcC----------CCce--EEecCCccchhhhhhccCCCCc
Q 024647 35 ELAWDVGTGS--GQAAASLSGIFENVIGTETSPKQIEFATKL----------PNIR--YELTSPAMSIAELEQNVAAQST 100 (265)
Q Consensus 35 ~~vlDvGcG~--G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~----------~~~~--~~~~~~~~~~~d~~~~~~~~~~ 100 (265)
.+|--||+|+ ...+..++..+.+|+..|++++.++.++.. .+.. .....+... .++++. -..
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~-~~l~~a---v~~ 83 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFV-ATIEAC---VAD 83 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceec-CCHHHH---hcC
Confidence 5688899996 245555677888999999999887764320 0000 000000000 122211 135
Q ss_pred eeEEEeccccccCC-hhHHHHHHHHHhcCCCcEEEE
Q 024647 101 VDLVTIAQAMHWFD-LPQFYNQVKWVLKKPNGVIAT 135 (265)
Q Consensus 101 ~Dlv~~~~~~~~~~-~~~~l~~~~~~Lk~pgG~l~~ 135 (265)
.|+|+.+-.-. .+ ...++.++.+.++ |+.+|..
T Consensus 84 aDlViEavpE~-l~vK~~lf~~l~~~~~-~~aIlaS 117 (321)
T PRK07066 84 ADFIQESAPER-EALKLELHERISRAAK-PDAIIAS 117 (321)
T ss_pred CCEEEECCcCC-HHHHHHHHHHHHHhCC-CCeEEEE
Confidence 68888652111 11 2367888888888 7764443
No 460
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=74.54 E-value=23 Score=30.37 Aligned_cols=86 Identities=10% Similarity=0.069 Sum_probs=51.1
Q ss_pred eEEEEcCCc--chhHHHHHhcCCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEeccccccC
Q 024647 36 LAWDVGTGS--GQAAASLSGIFENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWF 113 (265)
Q Consensus 36 ~vlDvGcG~--G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~ 113 (265)
+|-=||+|. +.++..|++.+.+|++.|.+++.++.+.+. ..... .+.+++.......|+|++.-.-.
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~-g~~~~--------~s~~~~~~~~~~~dvIi~~vp~~-- 70 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKED-RTTGV--------ANLRELSQRLSAPRVVWVMVPHG-- 70 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHc-CCccc--------CCHHHHHhhcCCCCEEEEEcCch--
Confidence 456688886 245666777888899999999988877642 11111 11122111112468888753211
Q ss_pred ChhHHHHHHHHHhcCCCcEE
Q 024647 114 DLPQFYNQVKWVLKKPNGVI 133 (265)
Q Consensus 114 ~~~~~l~~~~~~Lk~pgG~l 133 (265)
....+++++...|+ +|-++
T Consensus 71 ~~~~v~~~l~~~l~-~g~iv 89 (298)
T TIGR00872 71 IVDAVLEELAPTLE-KGDIV 89 (298)
T ss_pred HHHHHHHHHHhhCC-CCCEE
Confidence 23456777888888 66544
No 461
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=74.31 E-value=43 Score=29.31 Aligned_cols=96 Identities=19% Similarity=0.133 Sum_probs=58.0
Q ss_pred CCCCeEEEEcCC-cchhHHHHHhcC-CcEEEEcCCHHHHHHH-HcCCCceEEecCCccchhh-hhhc-cCCCCceeEEEe
Q 024647 32 TNHELAWDVGTG-SGQAAASLSGIF-ENVIGTETSPKQIEFA-TKLPNIRYELTSPAMSIAE-LEQN-VAAQSTVDLVTI 106 (265)
Q Consensus 32 ~~~~~vlDvGcG-~G~~~~~l~~~~-~~v~~vD~s~~~~~~a-~~~~~~~~~~~~~~~~~~d-~~~~-~~~~~~~Dlv~~ 106 (265)
.+++++--+|.| -|.++..+++.. .+|+++|-+..--+.+ +.+..-.|+...-+ .| ++++ ..-+.-.|-|..
T Consensus 180 ~pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kkeea~~~LGAd~fv~~~~d---~d~~~~~~~~~dg~~~~v~~ 256 (360)
T KOG0023|consen 180 GPGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKKEEAIKSLGADVFVDSTED---PDIMKAIMKTTDGGIDTVSN 256 (360)
T ss_pred CCCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchhHHHHHHhcCcceeEEecCC---HHHHHHHHHhhcCcceeeee
Confidence 466777666655 589999999875 5899999998555544 44444444443200 11 1111 112333444442
Q ss_pred ccccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647 107 AQAMHWFDLPQFYNQVKWVLKKPNGVIATWCY 138 (265)
Q Consensus 107 ~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~ 138 (265)
. ....+..+.+.|| ++|++++...
T Consensus 257 ~-------a~~~~~~~~~~lk-~~Gt~V~vg~ 280 (360)
T KOG0023|consen 257 L-------AEHALEPLLGLLK-VNGTLVLVGL 280 (360)
T ss_pred c-------cccchHHHHHHhh-cCCEEEEEeC
Confidence 2 2446777889999 9999997654
No 462
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=74.03 E-value=16 Score=35.68 Aligned_cols=97 Identities=11% Similarity=0.037 Sum_probs=57.0
Q ss_pred CeEEEEcCCcc--hhHHHHHhcCCcEEEEcCCHHHHHHHHcC-----------CCceEEe-----cCCccchhhhhhccC
Q 024647 35 ELAWDVGTGSG--QAAASLSGIFENVIGTETSPKQIEFATKL-----------PNIRYEL-----TSPAMSIAELEQNVA 96 (265)
Q Consensus 35 ~~vlDvGcG~G--~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-----------~~~~~~~-----~~~~~~~~d~~~~~~ 96 (265)
.+|--||+|+- .++..++..+.+|+.+|++++.++.+... ..+.-.. ..++.. .|...
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~--- 389 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPT-LSYAG--- 389 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCHHH---
Confidence 46889999973 45555677888999999999998876431 0000000 000000 11111
Q ss_pred CCCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEe
Q 024647 97 AQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWC 137 (265)
Q Consensus 97 ~~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~ 137 (265)
-...|+|+-+-.-..--..+++.++.++++ |+.+|+-.+
T Consensus 390 -~~~aDlViEav~E~l~~K~~vf~~l~~~~~-~~~ilasnT 428 (714)
T TIGR02437 390 -FDNVDIVVEAVVENPKVKAAVLAEVEQHVR-EDAILASNT 428 (714)
T ss_pred -hcCCCEEEEcCcccHHHHHHHHHHHHhhCC-CCcEEEECC
Confidence 135788886521111123479999999999 887776533
No 463
>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically
Probab=73.74 E-value=46 Score=29.39 Aligned_cols=99 Identities=13% Similarity=-0.028 Sum_probs=56.2
Q ss_pred CCCCeEEEEcCCc-chhHHHHHhc-CC-cEEEEcCCHHHHHHHHcCCCceEEecC-Cc-cchhhhhhccCCCCceeEEEe
Q 024647 32 TNHELAWDVGTGS-GQAAASLSGI-FE-NVIGTETSPKQIEFATKLPNIRYELTS-PA-MSIAELEQNVAAQSTVDLVTI 106 (265)
Q Consensus 32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~-~~-~~~~d~~~~~~~~~~~Dlv~~ 106 (265)
.++.+||-.|+|. |..+..+++. +. +|+.++.++..++.++.+.--.++... .. .....+..+. . +.+|+|+-
T Consensus 189 ~~g~~VlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~a~~lGa~~~i~~~~~~~~~~~~v~~~~-~-~~~d~vld 266 (373)
T cd08299 189 TPGSTCAVFGLGGVGLSAIMGCKAAGASRIIAVDINKDKFAKAKELGATECINPQDYKKPIQEVLTEMT-D-GGVDFSFE 266 (373)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEecccccchhHHHHHHHHh-C-CCCeEEEE
Confidence 4567788788764 5555555544 55 799999999999988764321222110 00 0011122221 2 46898876
Q ss_pred ccccccCChhHHHHHHHH-HhcCCCcEEEEEec
Q 024647 107 AQAMHWFDLPQFYNQVKW-VLKKPNGVIATWCY 138 (265)
Q Consensus 107 ~~~~~~~~~~~~l~~~~~-~Lk~pgG~l~~~~~ 138 (265)
.. .....+..... +++ ++|.++....
T Consensus 267 ~~-----g~~~~~~~~~~~~~~-~~G~~v~~g~ 293 (373)
T cd08299 267 VI-----GRLDTMKAALASCHE-GYGVSVIVGV 293 (373)
T ss_pred CC-----CCcHHHHHHHHhhcc-CCCEEEEEcc
Confidence 42 22345666444 456 7899887653
No 464
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=73.68 E-value=38 Score=25.91 Aligned_cols=83 Identities=16% Similarity=0.195 Sum_probs=43.0
Q ss_pred CCeEEEEcCCcchhHHHHH-------hcCCcEEEEcCCHHHHHHHHc-CCC--ceEEecCC-------cc----chhhhh
Q 024647 34 HELAWDVGTGSGQAAASLS-------GIFENVIGTETSPKQIEFATK-LPN--IRYELTSP-------AM----SIAELE 92 (265)
Q Consensus 34 ~~~vlDvGcG~G~~~~~l~-------~~~~~v~~vD~s~~~~~~a~~-~~~--~~~~~~~~-------~~----~~~d~~ 92 (265)
.-++||+-+|.|-..+.|- ++..+++.+.+.-...+...+ +.+ +.+..... +. ..+.+.
T Consensus 5 ~~~~~d~hpGaGKTr~vlp~~~~~~i~~~~rvLvL~PTRvva~em~~aL~~~~~~~~t~~~~~~~~g~~~i~vMc~at~~ 84 (148)
T PF07652_consen 5 ELTVLDLHPGAGKTRRVLPEIVREAIKRRLRVLVLAPTRVVAEEMYEALKGLPVRFHTNARMRTHFGSSIIDVMCHATYG 84 (148)
T ss_dssp EEEEEE--TTSSTTTTHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHTTTSSEEEESTTSS----SSSSEEEEEHHHHH
T ss_pred ceeEEecCCCCCCcccccHHHHHHHHHccCeEEEecccHHHHHHHHHHHhcCCcccCceeeeccccCCCcccccccHHHH
Confidence 3579999999997776543 345679999999887775543 211 22211100 00 001111
Q ss_pred ---hccCCCCceeEEEeccccccCChhH
Q 024647 93 ---QNVAAQSTVDLVTIAQAMHWFDLPQ 117 (265)
Q Consensus 93 ---~~~~~~~~~Dlv~~~~~~~~~~~~~ 117 (265)
.-+.....||+||+..+ ||.|+..
T Consensus 85 ~~~~~p~~~~~yd~II~DEc-H~~Dp~s 111 (148)
T PF07652_consen 85 HFLLNPCRLKNYDVIIMDEC-HFTDPTS 111 (148)
T ss_dssp HHHHTSSCTTS-SEEEECTT-T--SHHH
T ss_pred HHhcCcccccCccEEEEecc-ccCCHHH
Confidence 11334457999999876 7788875
No 465
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=73.66 E-value=46 Score=26.78 Aligned_cols=31 Identities=23% Similarity=0.337 Sum_probs=22.4
Q ss_pred CCeEEEEcCCc-ch-hHHHHHhcC-CcEEEEcCC
Q 024647 34 HELAWDVGTGS-GQ-AAASLSGIF-ENVIGTETS 64 (265)
Q Consensus 34 ~~~vlDvGcG~-G~-~~~~l~~~~-~~v~~vD~s 64 (265)
..+|+=+|||. |. .+..|+..+ .+++.+|.+
T Consensus 21 ~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 21 NSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 46799999995 43 445566666 479999987
No 466
>cd05282 ETR_like 2-enoyl thioester reductase-like. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman
Probab=73.36 E-value=42 Score=28.44 Aligned_cols=97 Identities=13% Similarity=0.122 Sum_probs=56.7
Q ss_pred CCCCeEEEEcCC--cchhHHHHHhc-CCcEEEEcCCHHHHHHHHcCCCceE-EecCCccchhhhhhccCCCCceeEEEec
Q 024647 32 TNHELAWDVGTG--SGQAAASLSGI-FENVIGTETSPKQIEFATKLPNIRY-ELTSPAMSIAELEQNVAAQSTVDLVTIA 107 (265)
Q Consensus 32 ~~~~~vlDvGcG--~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~Dlv~~~ 107 (265)
.++.+||=.|++ .|..+..+++. +.+++++..++...+.+++. ++.. ...........+... .....+|+|+..
T Consensus 137 ~~~~~vlI~g~~~~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~-~~~~~~d~vl~~ 214 (323)
T cd05282 137 PPGDWVIQNAANSAVGRMLIQLAKLLGFKTINVVRRDEQVEELKAL-GADEVIDSSPEDLAQRVKEA-TGGAGARLALDA 214 (323)
T ss_pred CCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecChHHHHHHHhc-CCCEEecccchhHHHHHHHH-hcCCCceEEEEC
Confidence 456788887773 46676666654 56888888888777777653 2211 111100001112222 234469999864
Q ss_pred cccccCChhHHHHHHHHHhcCCCcEEEEEe
Q 024647 108 QAMHWFDLPQFYNQVKWVLKKPNGVIATWC 137 (265)
Q Consensus 108 ~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~ 137 (265)
.. ........+.|+ ++|+++...
T Consensus 215 ~g------~~~~~~~~~~l~-~~g~~v~~g 237 (323)
T cd05282 215 VG------GESATRLARSLR-PGGTLVNYG 237 (323)
T ss_pred CC------CHHHHHHHHhhC-CCCEEEEEc
Confidence 32 123457778999 999988644
No 467
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=73.07 E-value=27 Score=30.02 Aligned_cols=38 Identities=18% Similarity=0.080 Sum_probs=29.1
Q ss_pred CeEEEEcCCc--chhHHHHHhcCCcEEEEcCCHHHHHHHH
Q 024647 35 ELAWDVGTGS--GQAAASLSGIFENVIGTETSPKQIEFAT 72 (265)
Q Consensus 35 ~~vlDvGcG~--G~~~~~l~~~~~~v~~vD~s~~~~~~a~ 72 (265)
.+|.=||+|. +.++..++..+.+|+++|.+++.++.++
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~ 44 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERAR 44 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHH
Confidence 4577889996 3455566677778999999998887665
No 468
>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so
Probab=73.01 E-value=57 Score=27.65 Aligned_cols=95 Identities=14% Similarity=0.071 Sum_probs=57.6
Q ss_pred CCeEEEEcC-C-cchhHHHHHhc-CCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEecccc
Q 024647 34 HELAWDVGT-G-SGQAAASLSGI-FENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAM 110 (265)
Q Consensus 34 ~~~vlDvGc-G-~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~ 110 (265)
+.+||=.|+ | .|..+..+++. +.+|+.++.++...+.+++.. +......-... ...... ...+.+|+|+....
T Consensus 147 ~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g-~~~~~~~~~~~-~~~~~~-~~~~~~d~vi~~~~- 222 (325)
T cd05280 147 DGPVLVTGATGGVGSIAVAILAKLGYTVVALTGKEEQADYLKSLG-ASEVLDREDLL-DESKKP-LLKARWAGAIDTVG- 222 (325)
T ss_pred CCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcC-CcEEEcchhHH-HHHHHH-hcCCCccEEEECCc-
Confidence 357887776 3 36666666654 568999999998888886543 22222111000 011111 12345888875422
Q ss_pred ccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647 111 HWFDLPQFYNQVKWVLKKPNGVIATWCY 138 (265)
Q Consensus 111 ~~~~~~~~l~~~~~~Lk~pgG~l~~~~~ 138 (265)
...+..+.+.|+ ++|+++....
T Consensus 223 -----~~~~~~~~~~l~-~~g~~v~~g~ 244 (325)
T cd05280 223 -----GDVLANLLKQTK-YGGVVASCGN 244 (325)
T ss_pred -----hHHHHHHHHhhc-CCCEEEEEec
Confidence 247888999999 9999887654
No 469
>PRK08265 short chain dehydrogenase; Provisional
Probab=73.01 E-value=32 Score=28.49 Aligned_cols=75 Identities=19% Similarity=0.118 Sum_probs=40.4
Q ss_pred CCeEEEEcCCcc---hhHHHHHhcCCcEEEEcCCHHHHHHHHc-C-CCceEEecCCccchhhhhh----ccCCCCceeEE
Q 024647 34 HELAWDVGTGSG---QAAASLSGIFENVIGTETSPKQIEFATK-L-PNIRYELTSPAMSIAELEQ----NVAAQSTVDLV 104 (265)
Q Consensus 34 ~~~vlDvGcG~G---~~~~~l~~~~~~v~~vD~s~~~~~~a~~-~-~~~~~~~~~~~~~~~d~~~----~~~~~~~~Dlv 104 (265)
++++|-.|++.| .++..|++.+.+|+.++.++.-++...+ . .++.+...+.... .++.. ....-+..|.+
T Consensus 6 ~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~-~~~~~~~~~~~~~~g~id~l 84 (261)
T PRK08265 6 GKVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGAAVAASLGERARFIATDITDD-AAIERAVATVVARFGRVDIL 84 (261)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCeeEEEEecCCCH-HHHHHHHHHHHHHhCCCCEE
Confidence 457788876543 2333455667889999998875554332 1 3455665544211 11111 11112468888
Q ss_pred Eeccc
Q 024647 105 TIAQA 109 (265)
Q Consensus 105 ~~~~~ 109 (265)
+.+..
T Consensus 85 v~~ag 89 (261)
T PRK08265 85 VNLAC 89 (261)
T ss_pred EECCC
Confidence 87653
No 470
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=72.96 E-value=57 Score=27.63 Aligned_cols=98 Identities=14% Similarity=0.134 Sum_probs=59.0
Q ss_pred CCCCeEEEEcC--CcchhHHHHHhc-CCcEEEEcCCHHHHHHHHcCCCceE-EecCCccchhhhhhccCCCCceeEEEec
Q 024647 32 TNHELAWDVGT--GSGQAAASLSGI-FENVIGTETSPKQIEFATKLPNIRY-ELTSPAMSIAELEQNVAAQSTVDLVTIA 107 (265)
Q Consensus 32 ~~~~~vlDvGc--G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~Dlv~~~ 107 (265)
.++.+||=.|+ +.|..+..+++. +.++++++.++...+.+++.. +.. ....-......+... .....+|+|+..
T Consensus 141 ~~~~~vlI~g~~~~~g~~~~~la~~~g~~v~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~-~~~~~~d~vl~~ 218 (324)
T cd08244 141 TPGDVVLVTAAAGGLGSLLVQLAKAAGATVVGAAGGPAKTALVRALG-ADVAVDYTRPDWPDQVREA-LGGGGVTVVLDG 218 (324)
T ss_pred CCCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcC-CCEEEecCCccHHHHHHHH-cCCCCceEEEEC
Confidence 45677887774 346666666654 568999999998888776532 222 211110000112222 233469999865
Q ss_pred cccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647 108 QAMHWFDLPQFYNQVKWVLKKPNGVIATWCY 138 (265)
Q Consensus 108 ~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~ 138 (265)
.. ......+.+.|+ ++|+++....
T Consensus 219 ~g------~~~~~~~~~~l~-~~g~~v~~g~ 242 (324)
T cd08244 219 VG------GAIGRAALALLA-PGGRFLTYGW 242 (324)
T ss_pred CC------hHhHHHHHHHhc-cCcEEEEEec
Confidence 22 124588899999 8999886543
No 471
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=72.94 E-value=5.5 Score=36.49 Aligned_cols=102 Identities=6% Similarity=0.091 Sum_probs=66.1
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcCC---cEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhc----cCCCCceeEE
Q 024647 32 TNHELAWDVGTGSGQAAASLSGIFE---NVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQN----VAAQSTVDLV 104 (265)
Q Consensus 32 ~~~~~vlDvGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~~Dlv 104 (265)
.++-+|||.=|++|.-+...++..+ +|++-|.++..++..++.-+.+-....++....|+..+ +-....||+|
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvI 187 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVI 187 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceE
Confidence 4557899999999999999887654 68999999999987764211111111111222343222 1234578887
Q ss_pred EeccccccCChhHHHHHHHHHhcCCCcEEEEEe
Q 024647 105 TIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWC 137 (265)
Q Consensus 105 ~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~ 137 (265)
=..- +=.+..+|+.+.+.++ .||.|.+..
T Consensus 188 DLDP---yGs~s~FLDsAvqav~-~gGLL~vT~ 216 (525)
T KOG1253|consen 188 DLDP---YGSPSPFLDSAVQAVR-DGGLLCVTC 216 (525)
T ss_pred ecCC---CCCccHHHHHHHHHhh-cCCEEEEEe
Confidence 6431 0134579999999999 899988743
No 472
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=72.90 E-value=16 Score=35.88 Aligned_cols=96 Identities=14% Similarity=0.057 Sum_probs=56.7
Q ss_pred CeEEEEcCCcc--hhHHHHHhcCCcEEEEcCCHHHHHHHHcC-----------CCceEEe-----cCCccchhhhhhccC
Q 024647 35 ELAWDVGTGSG--QAAASLSGIFENVIGTETSPKQIEFATKL-----------PNIRYEL-----TSPAMSIAELEQNVA 96 (265)
Q Consensus 35 ~~vlDvGcG~G--~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-----------~~~~~~~-----~~~~~~~~d~~~~~~ 96 (265)
.+|--||+|+- .++..++..+.+|+.+|++++.++.+... ..+.-.. ..++.. .|.+.
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~--- 411 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPT-LDYSG--- 411 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCHHH---
Confidence 46889999973 44555667788999999999998876531 0000000 000000 11111
Q ss_pred CCCceeEEEeccccccC-ChhHHHHHHHHHhcCCCcEEEEEe
Q 024647 97 AQSTVDLVTIAQAMHWF-DLPQFYNQVKWVLKKPNGVIATWC 137 (265)
Q Consensus 97 ~~~~~Dlv~~~~~~~~~-~~~~~l~~~~~~Lk~pgG~l~~~~ 137 (265)
-...|+|+-+-. .-+ -..+++.++.++++ |+.+|+-.+
T Consensus 412 -~~~aDlViEAv~-E~l~~K~~vf~~l~~~~~-~~~ilasNT 450 (737)
T TIGR02441 412 -FKNADMVIEAVF-EDLSLKHKVIKEVEAVVP-PHCIIASNT 450 (737)
T ss_pred -hccCCeehhhcc-ccHHHHHHHHHHHHhhCC-CCcEEEEcC
Confidence 135788875411 111 23479999999999 888776533
No 473
>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members. Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=72.87 E-value=59 Score=27.74 Aligned_cols=97 Identities=22% Similarity=0.148 Sum_probs=58.3
Q ss_pred CCCCeEEEEcC-C-cchhHHHHHhc-CCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEecc
Q 024647 32 TNHELAWDVGT-G-SGQAAASLSGI-FENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQ 108 (265)
Q Consensus 32 ~~~~~vlDvGc-G-~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~ 108 (265)
.++.++|=.|+ | .|..+..+++. +.++++++.++...+.++++.--......-......+... ..+.+|+|+...
T Consensus 138 ~~~~~vlI~ga~g~ig~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~--~~~~vd~v~~~~ 215 (329)
T cd08250 138 KSGETVLVTAAAGGTGQFAVQLAKLAGCHVIGTCSSDEKAEFLKSLGCDRPINYKTEDLGEVLKKE--YPKGVDVVYESV 215 (329)
T ss_pred CCCCEEEEEeCccHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHcCCceEEeCCCccHHHHHHHh--cCCCCeEEEECC
Confidence 46678888874 3 47777777665 5579999888888877765421111111110000112222 224689988642
Q ss_pred ccccCChhHHHHHHHHHhcCCCcEEEEEe
Q 024647 109 AMHWFDLPQFYNQVKWVLKKPNGVIATWC 137 (265)
Q Consensus 109 ~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~ 137 (265)
. ...+..+.+.|+ ++|+++...
T Consensus 216 g------~~~~~~~~~~l~-~~g~~v~~g 237 (329)
T cd08250 216 G------GEMFDTCVDNLA-LKGRLIVIG 237 (329)
T ss_pred c------HHHHHHHHHHhc-cCCeEEEEe
Confidence 2 357888899999 899988654
No 474
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=72.86 E-value=7.5 Score=30.58 Aligned_cols=88 Identities=23% Similarity=0.227 Sum_probs=48.3
Q ss_pred CCCeEEEEcCCc-chhHHHHHhc-CCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEecccc
Q 024647 33 NHELAWDVGTGS-GQAAASLSGI-FENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAM 110 (265)
Q Consensus 33 ~~~~vlDvGcG~-G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~ 110 (265)
.+.+|.=+|+|. |......++. +.+|++.|++......... ..+ .. .+++++- ...|+|+....+
T Consensus 35 ~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~-~~~--~~-------~~l~ell---~~aDiv~~~~pl 101 (178)
T PF02826_consen 35 RGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADE-FGV--EY-------VSLDELL---AQADIVSLHLPL 101 (178)
T ss_dssp TTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHH-TTE--EE-------SSHHHHH---HH-SEEEE-SSS
T ss_pred CCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhccc-ccc--ee-------eehhhhc---chhhhhhhhhcc
Confidence 568899999885 5554444444 4689999999997663322 222 22 2233331 247888876643
Q ss_pred ccCChhHHHHHHHHHhcCCCcEEE
Q 024647 111 HWFDLPQFYNQVKWVLKKPNGVIA 134 (265)
Q Consensus 111 ~~~~~~~~l~~~~~~Lk~pgG~l~ 134 (265)
.--...-+=++....+| +|.+|+
T Consensus 102 t~~T~~li~~~~l~~mk-~ga~lv 124 (178)
T PF02826_consen 102 TPETRGLINAEFLAKMK-PGAVLV 124 (178)
T ss_dssp STTTTTSBSHHHHHTST-TTEEEE
T ss_pred ccccceeeeeeeeeccc-cceEEE
Confidence 21111122245566778 676554
No 475
>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family. This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.
Probab=72.57 E-value=54 Score=27.92 Aligned_cols=96 Identities=13% Similarity=0.067 Sum_probs=55.8
Q ss_pred CCCC-eEEEEcC-Cc-chhHHHHHhc-CCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEec
Q 024647 32 TNHE-LAWDVGT-GS-GQAAASLSGI-FENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIA 107 (265)
Q Consensus 32 ~~~~-~vlDvGc-G~-G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~ 107 (265)
.++. +||=.|+ |. |..+..+++. +.+++.++-++...+.+++. ++......-. ....+..+ ..+.+|+++-.
T Consensus 143 ~~~~~~vlI~g~~g~vg~~~~~la~~~G~~vi~~~~~~~~~~~~~~~-g~~~~~~~~~-~~~~~~~~--~~~~~d~vld~ 218 (323)
T TIGR02823 143 TPEDGPVLVTGATGGVGSLAVAILSKLGYEVVASTGKAEEEDYLKEL-GASEVIDRED-LSPPGKPL--EKERWAGAVDT 218 (323)
T ss_pred CCCCceEEEEcCCcHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhc-CCcEEEcccc-HHHHHHHh--cCCCceEEEEC
Confidence 4556 8888887 33 6666666654 56788777777767777653 2222111100 00111122 22348988764
Q ss_pred cccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647 108 QAMHWFDLPQFYNQVKWVLKKPNGVIATWCY 138 (265)
Q Consensus 108 ~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~ 138 (265)
.. ...+..+.+.|+ ++|+++....
T Consensus 219 ~g------~~~~~~~~~~l~-~~G~~v~~g~ 242 (323)
T TIGR02823 219 VG------GHTLANVLAQLK-YGGAVAACGL 242 (323)
T ss_pred cc------HHHHHHHHHHhC-CCCEEEEEcc
Confidence 22 235778899999 9999987543
No 476
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=71.85 E-value=9.4 Score=35.13 Aligned_cols=88 Identities=19% Similarity=0.145 Sum_probs=54.2
Q ss_pred CCCeEEEEcCCc-chhHHHHH-hcCCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEecccc
Q 024647 33 NHELAWDVGTGS-GQAAASLS-GIFENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAM 110 (265)
Q Consensus 33 ~~~~vlDvGcG~-G~~~~~l~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~ 110 (265)
.+++|+-+|+|. |......+ ..+.+|+.+|.++.....+.. .+.... +++++ + ...|+|+....
T Consensus 253 aGKtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~-~G~~~~---------~leel-l--~~ADIVI~atG- 318 (476)
T PTZ00075 253 AGKTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAAM-EGYQVV---------TLEDV-V--ETADIFVTATG- 318 (476)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHh-cCceec---------cHHHH-H--hcCCEEEECCC-
Confidence 568899999997 43333333 345689999888776544443 232221 22332 1 35799987632
Q ss_pred ccCChhHHH-HHHHHHhcCCCcEEEEEecC
Q 024647 111 HWFDLPQFY-NQVKWVLKKPNGVIATWCYT 139 (265)
Q Consensus 111 ~~~~~~~~l-~~~~~~Lk~pgG~l~~~~~~ 139 (265)
...++ .+....+| ||++|+-....
T Consensus 319 ----t~~iI~~e~~~~MK-pGAiLINvGr~ 343 (476)
T PTZ00075 319 ----NKDIITLEHMRRMK-NNAIVGNIGHF 343 (476)
T ss_pred ----cccccCHHHHhccC-CCcEEEEcCCC
Confidence 22344 47888899 89998865444
No 477
>PRK08324 short chain dehydrogenase; Validated
Probab=71.81 E-value=34 Score=33.18 Aligned_cols=103 Identities=17% Similarity=0.097 Sum_probs=56.7
Q ss_pred CCeEEEEcCCcc---hhHHHHHhcCCcEEEEcCCHHHHHHHHc-C---CCceEEecCCccchhhhh----hccCCCCcee
Q 024647 34 HELAWDVGTGSG---QAAASLSGIFENVIGTETSPKQIEFATK-L---PNIRYELTSPAMSIAELE----QNVAAQSTVD 102 (265)
Q Consensus 34 ~~~vlDvGcG~G---~~~~~l~~~~~~v~~vD~s~~~~~~a~~-~---~~~~~~~~~~~~~~~d~~----~~~~~~~~~D 102 (265)
++++|-.|++.| .++..+++++.+|+++|.++.-++.+.. . .++.+...+.... .+++ ......+.+|
T Consensus 422 gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~~~v~~v~~Dvtd~-~~v~~~~~~~~~~~g~iD 500 (681)
T PRK08324 422 GKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGPDRALGVACDVTDE-AAVQAAFEEAALAFGGVD 500 (681)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhccCcEEEEEecCCCH-HHHHHHHHHHHHHcCCCC
Confidence 467888886433 2333345567889999999887665432 1 2455555444211 1111 1111124689
Q ss_pred EEEeccccccCC--------------------hhHHHHHHHHHhcCC---CcEEEEEec
Q 024647 103 LVTIAQAMHWFD--------------------LPQFYNQVKWVLKKP---NGVIATWCY 138 (265)
Q Consensus 103 lv~~~~~~~~~~--------------------~~~~l~~~~~~Lk~p---gG~l~~~~~ 138 (265)
+|+.+....... ...+++.+.+.++ . +|.+++...
T Consensus 501 vvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~-~~~~~g~iV~vsS 558 (681)
T PRK08324 501 IVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMK-AQGLGGSIVFIAS 558 (681)
T ss_pred EEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHH-hcCCCcEEEEECC
Confidence 998766532211 2245666677776 5 577776443
No 478
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=71.65 E-value=12 Score=33.47 Aligned_cols=41 Identities=10% Similarity=0.066 Sum_probs=29.5
Q ss_pred CCCCCeEEEEcCCcchhHHHHHhcC-CcEEEEcCCHHHHHHHH
Q 024647 31 TTNHELAWDVGTGSGQAAASLSGIF-ENVIGTETSPKQIEFAT 72 (265)
Q Consensus 31 ~~~~~~vlDvGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~ 72 (265)
..++++||-|..| |.-...++... ++|++||+||.+....+
T Consensus 33 i~~~d~vl~ItSa-G~N~L~yL~~~P~~I~aVDlNp~Q~aLle 74 (380)
T PF11899_consen 33 IGPDDRVLTITSA-GCNALDYLLAGPKRIHAVDLNPAQNALLE 74 (380)
T ss_pred CCCCCeEEEEccC-CchHHHHHhcCCceEEEEeCCHHHHHHHH
Confidence 4677899999655 44444444444 57999999999987543
No 479
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=71.58 E-value=39 Score=28.46 Aligned_cols=118 Identities=8% Similarity=-0.033 Sum_probs=63.7
Q ss_pred hCCCCcHHHHHHHHhhCCCCCeEEEEcCCcchhHHHHHhcCCcEEEEcCCHHHHHHHHc----------CCCceEEecCC
Q 024647 15 TRPNYPEELFKFITSKTTNHELAWDVGTGSGQAAASLSGIFENVIGTETSPKQIEFATK----------LPNIRYELTSP 84 (265)
Q Consensus 15 ~rp~y~~~l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~----------~~~~~~~~~~~ 84 (265)
.|-.|-++.+...... ....|+.+|||-=.-...+... ..+.-.|++..-+-..|+ ..+..++..+.
T Consensus 65 ~Rtr~~D~~i~~~~~~--g~~qvV~LGaGlDTr~~Rl~~~-~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl 141 (260)
T TIGR00027 65 VRTRFFDDFLLAAVAA--GIRQVVILGAGLDTRAYRLPWP-DGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDL 141 (260)
T ss_pred HHHHHHHHHHHHHHhc--CCcEEEEeCCccccHHHhcCCC-CCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCc
Confidence 4444444444433322 2345999999976555555322 234444444333222221 13455555443
Q ss_pred ccchhhhh-hc---cCCCCceeEEEeccccccCChh---HHHHHHHHHhcCCCcEEEEEecC
Q 024647 85 AMSIAELE-QN---VAAQSTVDLVTIAQAMHWFDLP---QFYNQVKWVLKKPNGVIATWCYT 139 (265)
Q Consensus 85 ~~~~~d~~-~~---~~~~~~~Dlv~~~~~~~~~~~~---~~l~~~~~~Lk~pgG~l~~~~~~ 139 (265)
. .++. .+ .+..+..-++++-.++.+++.+ .+++.+.+... ||+.+++-...
T Consensus 142 ~---~~w~~~L~~~gfd~~~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~-~gs~l~~d~~~ 199 (260)
T TIGR00027 142 R---QDWPAALAAAGFDPTAPTAWLWEGLLMYLTEEAVDALLAFIAELSA-PGSRLAFDYVR 199 (260)
T ss_pred h---hhHHHHHHhCCCCCCCCeeeeecchhhcCCHHHHHHHHHHHHHhCC-CCcEEEEEecc
Confidence 2 2221 11 2333455677777788899654 57888888877 78888874443
No 480
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=71.56 E-value=11 Score=30.15 Aligned_cols=82 Identities=15% Similarity=0.036 Sum_probs=51.3
Q ss_pred CCcchhHHHHH----hcCCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEeccccccCChh-
Q 024647 42 TGSGQAAASLS----GIFENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMHWFDLP- 116 (265)
Q Consensus 42 cG~G~~~~~l~----~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~~~~~~- 116 (265)
|-+|..+..++ +++.+|+++=-++.-+... +++...+.++ -|.+.+...-..+|+|++++...|.+..
T Consensus 7 gAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~---~~~~i~q~Di----fd~~~~a~~l~g~DaVIsA~~~~~~~~~~ 79 (211)
T COG2910 7 GASGKAGSRILKEALKRGHEVTAIVRNASKLAAR---QGVTILQKDI----FDLTSLASDLAGHDAVISAFGAGASDNDE 79 (211)
T ss_pred ecCchhHHHHHHHHHhCCCeeEEEEeChHhcccc---ccceeecccc----cChhhhHhhhcCCceEEEeccCCCCChhH
Confidence 55777777765 4688899998888755443 3455556443 2333322223469999999877776433
Q ss_pred ---HHHHHHHHHhcCCCc
Q 024647 117 ---QFYNQVKWVLKKPNG 131 (265)
Q Consensus 117 ---~~l~~~~~~Lk~pgG 131 (265)
+..+.+...|+ .-|
T Consensus 80 ~~~k~~~~li~~l~-~ag 96 (211)
T COG2910 80 LHSKSIEALIEALK-GAG 96 (211)
T ss_pred HHHHHHHHHHHHHh-hcC
Confidence 35566677777 434
No 481
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=70.51 E-value=6.4 Score=30.65 Aligned_cols=97 Identities=16% Similarity=0.166 Sum_probs=52.7
Q ss_pred CCCeEEEEcCCc-chhHHHHHh-cCCcEEEEcCCHHHHHHHHcCCCceEEecC------------------Cccchhhhh
Q 024647 33 NHELAWDVGTGS-GQAAASLSG-IFENVIGTETSPKQIEFATKLPNIRYELTS------------------PAMSIAELE 92 (265)
Q Consensus 33 ~~~~vlDvGcG~-G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~------------------~~~~~~d~~ 92 (265)
++.+|+=+|.|. |.-+..++. .+.+++..|..+..++..+.... .+.... .+.....+.
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 97 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQLESLGA-YFIEVDYEDHLERKDFDKADYYEHPESYESNFA 97 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTT-EESEETTTTTTTSB-CCHHHCHHHCCHHHHHHH
T ss_pred CCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhhcccC-ceEEEcccccccccccchhhhhHHHHHhHHHHH
Confidence 457899999996 766666665 46799999999998887765322 222211 000000111
Q ss_pred hccCCCCceeEEEeccccccC-ChhHHHHHHHHHhcCCCcEEE
Q 024647 93 QNVAAQSTVDLVTIAQAMHWF-DLPQFYNQVKWVLKKPNGVIA 134 (265)
Q Consensus 93 ~~~~~~~~~Dlv~~~~~~~~~-~~~~~l~~~~~~Lk~pgG~l~ 134 (265)
+. -..+|+|+.+..+.-- .|.-+-++..+.|+ ||..++
T Consensus 98 ~~---i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~-~gsvIv 136 (168)
T PF01262_consen 98 EF---IAPADIVIGNGLYWGKRAPRLVTEEMVKSMK-PGSVIV 136 (168)
T ss_dssp HH---HHH-SEEEEHHHBTTSS---SBEHHHHHTSS-TTEEEE
T ss_pred HH---HhhCcEEeeecccCCCCCCEEEEhHHhhccC-CCceEE
Confidence 11 1246888765433222 34446667778888 676554
No 482
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=70.33 E-value=53 Score=28.23 Aligned_cols=93 Identities=23% Similarity=0.185 Sum_probs=52.4
Q ss_pred eEEEEcCCc--chhHHHHHhcCCcEEEEcCCHHHHHHHHcCC-CceEEec-----CCccchhhhhhccCCCCceeEEEec
Q 024647 36 LAWDVGTGS--GQAAASLSGIFENVIGTETSPKQIEFATKLP-NIRYELT-----SPAMSIAELEQNVAAQSTVDLVTIA 107 (265)
Q Consensus 36 ~vlDvGcG~--G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~-~~~~~~~-----~~~~~~~d~~~~~~~~~~~Dlv~~~ 107 (265)
+|.=+|+|. +.++..|++.+.+|+.+|.++..++..+... +...... .... ..+.++. ....|+|+..
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~D~vi~~ 78 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRA-TTDLAEA---LADADLILVA 78 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEE-eCCHHHH---HhCCCEEEEe
Confidence 577788885 3455556677788999999998887665421 1100000 0000 0122211 1257888876
Q ss_pred cccccCChhHHHHHHHHHhcCCCcEEEE
Q 024647 108 QAMHWFDLPQFYNQVKWVLKKPNGVIAT 135 (265)
Q Consensus 108 ~~~~~~~~~~~l~~~~~~Lk~pgG~l~~ 135 (265)
-.-+ ....+++.+...++ ++..++.
T Consensus 79 v~~~--~~~~v~~~l~~~~~-~~~~vi~ 103 (325)
T PRK00094 79 VPSQ--ALREVLKQLKPLLP-PDAPIVW 103 (325)
T ss_pred CCHH--HHHHHHHHHHhhcC-CCCEEEE
Confidence 4321 23566777777788 7766553
No 483
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=70.22 E-value=68 Score=27.32 Aligned_cols=99 Identities=15% Similarity=0.095 Sum_probs=52.3
Q ss_pred CCCCeEEEEcCCc-chhHHHHHhc-CCcEEEE--cCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEec
Q 024647 32 TNHELAWDVGTGS-GQAAASLSGI-FENVIGT--ETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIA 107 (265)
Q Consensus 32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~~v~~v--D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~ 107 (265)
.++.+||-.|+|. |..+..+++. +.+|+.+ +-++.....++++. +.............+... .....+|+++..
T Consensus 163 ~~g~~vlI~g~g~~g~~~~~la~~~G~~v~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~l~~~-~~~~~vd~vld~ 240 (306)
T cd08258 163 RPGDTVVVFGPGPIGLLAAQVAKLQGATVVVVGTEKDEVRLDVAKELG-ADAVNGGEEDLAELVNEI-TDGDGADVVIEC 240 (306)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHhC-CcccCCCcCCHHHHHHHH-cCCCCCCEEEEC
Confidence 3556666666542 5555555554 4577666 33444445544422 211111100000112222 234568998864
Q ss_pred cccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647 108 QAMHWFDLPQFYNQVKWVLKKPNGVIATWCY 138 (265)
Q Consensus 108 ~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~ 138 (265)
. .....+....+.|+ ++|+++....
T Consensus 241 ~-----g~~~~~~~~~~~l~-~~G~~v~~g~ 265 (306)
T cd08258 241 S-----GAVPALEQALELLR-KGGRIVQVGI 265 (306)
T ss_pred C-----CChHHHHHHHHHhh-cCCEEEEEcc
Confidence 2 22467888899999 9999986554
No 484
>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=70.17 E-value=71 Score=27.49 Aligned_cols=100 Identities=17% Similarity=0.122 Sum_probs=58.3
Q ss_pred CCCCeEEEEcCCc-chhHHHHHhc-CCc-EEEEcCCHHHHHHHHcCCCceEEecCCccchhh---hhhccCCCCceeEEE
Q 024647 32 TNHELAWDVGTGS-GQAAASLSGI-FEN-VIGTETSPKQIEFATKLPNIRYELTSPAMSIAE---LEQNVAAQSTVDLVT 105 (265)
Q Consensus 32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d---~~~~~~~~~~~Dlv~ 105 (265)
.++.+||=.|+|. |..+..+++. +.+ +++++.++...+.+++.....+..........+ +... ...+.+|+++
T Consensus 160 ~~g~~VlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~-~~~~~~d~vi 238 (341)
T cd08262 160 TPGEVALVIGCGPIGLAVIAALKARGVGPIVASDFSPERRALALAMGADIVVDPAADSPFAAWAAELAR-AGGPKPAVIF 238 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCcEEEcCCCcCHHHHHHHHHHH-hCCCCCCEEE
Confidence 4667787778653 5555555554 444 888999999888877643222222111000001 1111 2345699888
Q ss_pred eccccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647 106 IAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCY 138 (265)
Q Consensus 106 ~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~ 138 (265)
-.. .....+.++.+.|+ ++|+++....
T Consensus 239 d~~-----g~~~~~~~~~~~l~-~~g~~v~~g~ 265 (341)
T cd08262 239 ECV-----GAPGLIQQIIEGAP-PGGRIVVVGV 265 (341)
T ss_pred ECC-----CCHHHHHHHHHHhc-cCCEEEEECC
Confidence 532 22246788899999 9999887554
No 485
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=70.16 E-value=25 Score=34.39 Aligned_cols=95 Identities=18% Similarity=0.118 Sum_probs=55.7
Q ss_pred CeEEEEcCCc--chhHHHHHhcCCcEEEEcCCHHHHHHHHcC-----------CCceEE-----ecCCccchhhhhhccC
Q 024647 35 ELAWDVGTGS--GQAAASLSGIFENVIGTETSPKQIEFATKL-----------PNIRYE-----LTSPAMSIAELEQNVA 96 (265)
Q Consensus 35 ~~vlDvGcG~--G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-----------~~~~~~-----~~~~~~~~~d~~~~~~ 96 (265)
.+|.-||+|+ ..++..++..+.+|+.+|++++.++.+... ..+.-. ....+.. .|.+.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~--- 389 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPT-LDYAG--- 389 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCHHH---
Confidence 4689999998 345555677888999999999998865431 000000 0000000 12221
Q ss_pred CCCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEE
Q 024647 97 AQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIAT 135 (265)
Q Consensus 97 ~~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~ 135 (265)
-...|+|+-+-.-..--..+++.++.++++ |+.+|+-
T Consensus 390 -~~~aDlViEav~E~l~~K~~vf~~l~~~~~-~~~ilas 426 (715)
T PRK11730 390 -FERVDVVVEAVVENPKVKAAVLAEVEQKVR-EDTILAS 426 (715)
T ss_pred -hcCCCEEEecccCcHHHHHHHHHHHHhhCC-CCcEEEE
Confidence 135788886521111123478999999998 8876654
No 486
>cd08249 enoyl_reductase_like enoyl_reductase_like. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de
Probab=69.95 E-value=49 Score=28.64 Aligned_cols=98 Identities=14% Similarity=0.082 Sum_probs=57.4
Q ss_pred CCCCeEEEEcCC--cchhHHHHHhc-CCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEecc
Q 024647 32 TNHELAWDVGTG--SGQAAASLSGI-FENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQ 108 (265)
Q Consensus 32 ~~~~~vlDvGcG--~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~ 108 (265)
.++.+||-.|++ .|..+..+++. +.+++++. +++..+.+++..--.............+..+ ..+.+|+|+...
T Consensus 153 ~~~~~vlI~ga~g~vg~~~~~~a~~~G~~v~~~~-~~~~~~~~~~~g~~~v~~~~~~~~~~~l~~~--~~~~~d~vl~~~ 229 (339)
T cd08249 153 SKGKPVLIWGGSSSVGTLAIQLAKLAGYKVITTA-SPKNFDLVKSLGADAVFDYHDPDVVEDIRAA--TGGKLRYALDCI 229 (339)
T ss_pred CCCCEEEEEcChhHHHHHHHHHHHHcCCeEEEEE-CcccHHHHHhcCCCEEEECCCchHHHHHHHh--cCCCeeEEEEee
Confidence 356788888863 47777777764 55777776 6666676665321122221110011122222 235689998642
Q ss_pred ccccCChhHHHHHHHHHhcCC--CcEEEEEec
Q 024647 109 AMHWFDLPQFYNQVKWVLKKP--NGVIATWCY 138 (265)
Q Consensus 109 ~~~~~~~~~~l~~~~~~Lk~p--gG~l~~~~~ 138 (265)
.....+..+.+.|+ + +|.++....
T Consensus 230 -----g~~~~~~~~~~~l~-~~~~g~~v~~g~ 255 (339)
T cd08249 230 -----STPESAQLCAEALG-RSGGGKLVSLLP 255 (339)
T ss_pred -----ccchHHHHHHHHHh-ccCCCEEEEecC
Confidence 22257889999999 9 999886543
No 487
>PRK06182 short chain dehydrogenase; Validated
Probab=69.69 E-value=36 Score=28.37 Aligned_cols=74 Identities=12% Similarity=0.112 Sum_probs=42.4
Q ss_pred CCeEEEEcCCcchhHHHH----HhcCCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhc----cCCCCceeEEE
Q 024647 34 HELAWDVGTGSGQAAASL----SGIFENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQN----VAAQSTVDLVT 105 (265)
Q Consensus 34 ~~~vlDvGcG~G~~~~~l----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~~Dlv~ 105 (265)
.+++|=.|++. .++..+ ++.+.+|++++.++.-++.... .++.+...+.... .+++.. ....+.+|+++
T Consensus 3 ~k~vlItGasg-giG~~la~~l~~~G~~V~~~~r~~~~l~~~~~-~~~~~~~~Dv~~~-~~~~~~~~~~~~~~~~id~li 79 (273)
T PRK06182 3 KKVALVTGASS-GIGKATARRLAAQGYTVYGAARRVDKMEDLAS-LGVHPLSLDVTDE-ASIKAAVDTIIAEEGRIDVLV 79 (273)
T ss_pred CCEEEEECCCC-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh-CCCeEEEeeCCCH-HHHHHHHHHHHHhcCCCCEEE
Confidence 35678778644 455554 4556789999998877665443 3466666544211 111111 01224689999
Q ss_pred ecccc
Q 024647 106 IAQAM 110 (265)
Q Consensus 106 ~~~~~ 110 (265)
.+...
T Consensus 80 ~~ag~ 84 (273)
T PRK06182 80 NNAGY 84 (273)
T ss_pred ECCCc
Confidence 87654
No 488
>cd08252 AL_MDR Arginate lyase and other MDR family members. This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil
Probab=69.62 E-value=71 Score=27.30 Aligned_cols=95 Identities=21% Similarity=0.259 Sum_probs=58.8
Q ss_pred CCeEEEEcC-C-cchhHHHHHhc-C-CcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEeccc
Q 024647 34 HELAWDVGT-G-SGQAAASLSGI-F-ENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQA 109 (265)
Q Consensus 34 ~~~vlDvGc-G-~G~~~~~l~~~-~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~ 109 (265)
+.+|+-.|+ | .|..+..+++. + .++++++.++...+.+++.. +.............+.. ...+.+|+++..
T Consensus 150 g~~vlV~g~~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~i~~--~~~~~~d~vl~~-- 224 (336)
T cd08252 150 GKTLLIIGGAGGVGSIAIQLAKQLTGLTVIATASRPESIAWVKELG-ADHVINHHQDLAEQLEA--LGIEPVDYIFCL-- 224 (336)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHcCCcEEEEEcCChhhHHHHHhcC-CcEEEeCCccHHHHHHh--hCCCCCCEEEEc--
Confidence 678888885 2 36666666654 5 68999999988888876532 22222111100011221 223468888754
Q ss_pred cccCChhHHHHHHHHHhcCCCcEEEEEe
Q 024647 110 MHWFDLPQFYNQVKWVLKKPNGVIATWC 137 (265)
Q Consensus 110 ~~~~~~~~~l~~~~~~Lk~pgG~l~~~~ 137 (265)
......+..+.+.|+ ++|.++...
T Consensus 225 ---~~~~~~~~~~~~~l~-~~g~~v~~g 248 (336)
T cd08252 225 ---TDTDQHWDAMAELIA-PQGHICLIV 248 (336)
T ss_pred ---cCcHHHHHHHHHHhc-CCCEEEEec
Confidence 222468889999999 899998654
No 489
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=69.32 E-value=17 Score=33.02 Aligned_cols=92 Identities=15% Similarity=0.094 Sum_probs=52.1
Q ss_pred eEEEEcCCcchhHHHHH----hcCCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEeccccc
Q 024647 36 LAWDVGTGSGQAAASLS----GIFENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMH 111 (265)
Q Consensus 36 ~vlDvGcG~G~~~~~l~----~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~ 111 (265)
+|+=+||| ..+..++ +.+.+|+.+|.++..++.++...++....+++.. ...+++. .-..+|.|++...-
T Consensus 2 ~viIiG~G--~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~~~~gd~~~-~~~l~~~--~~~~a~~vi~~~~~- 75 (453)
T PRK09496 2 KIIIVGAG--QVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVRTVVGNGSS-PDVLREA--GAEDADLLIAVTDS- 75 (453)
T ss_pred EEEEECCC--HHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEEEEEeCCCC-HHHHHHc--CCCcCCEEEEecCC-
Confidence 56777775 4555544 4566899999999988887653456666655421 1222222 23468888875321
Q ss_pred cCChhHHHHHHHHHhcCCCcEEEE
Q 024647 112 WFDLPQFYNQVKWVLKKPNGVIAT 135 (265)
Q Consensus 112 ~~~~~~~l~~~~~~Lk~pgG~l~~ 135 (265)
.+....+....+.+. |.-.+++
T Consensus 76 -~~~n~~~~~~~r~~~-~~~~ii~ 97 (453)
T PRK09496 76 -DETNMVACQIAKSLF-GAPTTIA 97 (453)
T ss_pred -hHHHHHHHHHHHHhc-CCCeEEE
Confidence 112234445556664 4444444
No 490
>PRK07576 short chain dehydrogenase; Provisional
Probab=69.01 E-value=54 Score=27.23 Aligned_cols=74 Identities=14% Similarity=0.023 Sum_probs=39.3
Q ss_pred CCCeEEEEcCCcchhHHH----HHhcCCcEEEEcCCHHHHHHHHc-----CCCceEEecCCccchhhhhh----ccCCCC
Q 024647 33 NHELAWDVGTGSGQAAAS----LSGIFENVIGTETSPKQIEFATK-----LPNIRYELTSPAMSIAELEQ----NVAAQS 99 (265)
Q Consensus 33 ~~~~vlDvGcG~G~~~~~----l~~~~~~v~~vD~s~~~~~~a~~-----~~~~~~~~~~~~~~~~d~~~----~~~~~~ 99 (265)
++.++|-.|. +|.++.. +++.+.+|++++.++..++.... ..++.+...++... .++.. .....+
T Consensus 8 ~~k~ilItGa-sggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~-~~i~~~~~~~~~~~~ 85 (264)
T PRK07576 8 AGKNVVVVGG-TSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAGPEGLGVSADVRDY-AAVEAAFAQIADEFG 85 (264)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEECCCCCH-HHHHHHHHHHHHHcC
Confidence 3456777775 4444444 45567789999998776553321 12344555444211 11111 111124
Q ss_pred ceeEEEecc
Q 024647 100 TVDLVTIAQ 108 (265)
Q Consensus 100 ~~Dlv~~~~ 108 (265)
.+|.++.+-
T Consensus 86 ~iD~vi~~a 94 (264)
T PRK07576 86 PIDVLVSGA 94 (264)
T ss_pred CCCEEEECC
Confidence 689988654
No 491
>smart00829 PKS_ER Enoylreductase. Enoylreductase in Polyketide synthases.
Probab=68.54 E-value=65 Score=26.41 Aligned_cols=99 Identities=21% Similarity=0.163 Sum_probs=57.3
Q ss_pred CCCCeEEEEcC-C-cchhHHHHHhc-CCcEEEEcCCHHHHHHHHcCCC--ceEEecCCccchhhhhhccCCCCceeEEEe
Q 024647 32 TNHELAWDVGT-G-SGQAAASLSGI-FENVIGTETSPKQIEFATKLPN--IRYELTSPAMSIAELEQNVAAQSTVDLVTI 106 (265)
Q Consensus 32 ~~~~~vlDvGc-G-~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~--~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~ 106 (265)
.++.+|+=.|. | .|..+..+++. +.+|++++.++..++.++...- ..............+... .+...+|+++.
T Consensus 103 ~~g~~vlv~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~vi~ 181 (288)
T smart00829 103 RPGESVLIHAAAGGVGQAAIQLAQHLGAEVFATAGSPEKRDFLRELGIPDDHIFSSRDLSFADEILRA-TGGRGVDVVLN 181 (288)
T ss_pred CCCCEEEEecCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCChhheeeCCCccHHHHHHHH-hCCCCcEEEEe
Confidence 45677877773 3 36666666654 5689999999998888765321 111111100000111112 23346888885
Q ss_pred ccccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647 107 AQAMHWFDLPQFYNQVKWVLKKPNGVIATWCY 138 (265)
Q Consensus 107 ~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~ 138 (265)
.. . ...+..+.+.|+ ++|.++....
T Consensus 182 ~~-----~-~~~~~~~~~~l~-~~g~~v~~g~ 206 (288)
T smart00829 182 SL-----A-GEFLDASLRCLA-PGGRFVEIGK 206 (288)
T ss_pred CC-----C-HHHHHHHHHhcc-CCcEEEEEcC
Confidence 32 2 246677889999 8999886543
No 492
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=68.47 E-value=49 Score=25.75 Aligned_cols=111 Identities=17% Similarity=0.118 Sum_probs=61.7
Q ss_pred CcHHHHHHHHhhC----CCCCeEEEEcCCcchhHHHH-HhcCCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhh
Q 024647 19 YPEELFKFITSKT----TNHELAWDVGTGSGQAAASL-SGIFENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQ 93 (265)
Q Consensus 19 y~~~l~~~l~~~~----~~~~~vlDvGcG~G~~~~~l-~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~ 93 (265)
|.++..+.|.... .+..+|+-|||-+-.....- .....+++..|++...-.... + .|..-+. ...+.
T Consensus 7 Ys~~T~~~l~~~l~~~~~~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~RF~~~~~---~-~F~fyD~----~~p~~ 78 (162)
T PF10237_consen 7 YSDETAEFLARELLDGALDDTRIACLSTPSLYEALKKESKPRIQSFLLEYDRRFEQFGG---D-EFVFYDY----NEPEE 78 (162)
T ss_pred cCHHHHHHHHHHHHHhcCCCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecchHHhcCC---c-ceEECCC----CChhh
Confidence 5666666665543 45678999999875444333 113457999999988755332 2 2333221 11122
Q ss_pred cc-CCCCceeEEEeccccccCChh-HHHHHHHHHhcCCCcEEEEEec
Q 024647 94 NV-AAQSTVDLVTIAQAMHWFDLP-QFYNQVKWVLKKPNGVIATWCY 138 (265)
Q Consensus 94 ~~-~~~~~~Dlv~~~~~~~~~~~~-~~l~~~~~~Lk~pgG~l~~~~~ 138 (265)
++ .-.+++|+|++.-.+---+.. +....+.-+++ +++.+++.+.
T Consensus 79 ~~~~l~~~~d~vv~DPPFl~~ec~~k~a~ti~~L~k-~~~kii~~Tg 124 (162)
T PF10237_consen 79 LPEELKGKFDVVVIDPPFLSEECLTKTAETIRLLLK-PGGKIILCTG 124 (162)
T ss_pred hhhhcCCCceEEEECCCCCCHHHHHHHHHHHHHHhC-ccceEEEecH
Confidence 22 114689999987665111222 34455555556 7787776443
No 493
>PRK08655 prephenate dehydrogenase; Provisional
Probab=67.97 E-value=28 Score=31.75 Aligned_cols=84 Identities=23% Similarity=0.225 Sum_probs=46.6
Q ss_pred eEEEEc-CCc-c-hhHHHHHhcCCcEEEEcCCHHHHH-HHHcCCCceEEecCCccchhhhhhccCCCCceeEEEeccccc
Q 024647 36 LAWDVG-TGS-G-QAAASLSGIFENVIGTETSPKQIE-FATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQAMH 111 (265)
Q Consensus 36 ~vlDvG-cG~-G-~~~~~l~~~~~~v~~vD~s~~~~~-~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~~~~ 111 (265)
+|.=+| +|. | .++..+.+.+.+|+++|.++.... .+.+. ++... .+.... -...|+|+..-...
T Consensus 2 kI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~-gv~~~--------~~~~e~---~~~aDvVIlavp~~ 69 (437)
T PRK08655 2 KISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKEL-GVEYA--------NDNIDA---AKDADIVIISVPIN 69 (437)
T ss_pred EEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHc-CCeec--------cCHHHH---hccCCEEEEecCHH
Confidence 466676 563 3 355556666778999999987753 34432 33211 122221 12468888764322
Q ss_pred cCChhHHHHHHHHHhcCCCcEEE
Q 024647 112 WFDLPQFYNQVKWVLKKPNGVIA 134 (265)
Q Consensus 112 ~~~~~~~l~~~~~~Lk~pgG~l~ 134 (265)
. ...+++++...++ +|..++
T Consensus 70 ~--~~~vl~~l~~~l~-~~~iVi 89 (437)
T PRK08655 70 V--TEDVIKEVAPHVK-EGSLLM 89 (437)
T ss_pred H--HHHHHHHHHhhCC-CCCEEE
Confidence 1 1356666666777 666444
No 494
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=67.90 E-value=28 Score=29.72 Aligned_cols=37 Identities=19% Similarity=0.156 Sum_probs=28.2
Q ss_pred CeEEEEcCCc-c-hhHHHHHhcCCcEEEEcCCHHHHHHH
Q 024647 35 ELAWDVGTGS-G-QAAASLSGIFENVIGTETSPKQIEFA 71 (265)
Q Consensus 35 ~~vlDvGcG~-G-~~~~~l~~~~~~v~~vD~s~~~~~~a 71 (265)
.+|-=||+|. | .++..++..+.+|+++|.++..++.+
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~ 43 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRG 43 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHH
Confidence 4577889986 3 55556667788999999999988754
No 495
>TIGR01751 crot-CoA-red crotonyl-CoA reductase. The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.
Probab=66.99 E-value=92 Score=27.73 Aligned_cols=99 Identities=14% Similarity=0.116 Sum_probs=58.6
Q ss_pred CCCCeEEEEcC-C-cchhHHHHHhc-CCcEEEEcCCHHHHHHHHcCCCceEEecCCc-----c-----------------
Q 024647 32 TNHELAWDVGT-G-SGQAAASLSGI-FENVIGTETSPKQIEFATKLPNIRYELTSPA-----M----------------- 86 (265)
Q Consensus 32 ~~~~~vlDvGc-G-~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~-----~----------------- 86 (265)
.++.+||-.|+ | .|..+..+++. +.++++++.++...+.+++......+..... .
T Consensus 188 ~~g~~vlV~Ga~g~vG~~ai~~ak~~G~~vi~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (398)
T TIGR01751 188 KPGDNVLIWGAAGGLGSYATQLARAGGGNPVAVVSSPEKAEYCRELGAEAVIDRNDFGHWGRLPDLNTQAPKEWTKSFKR 267 (398)
T ss_pred CCCCEEEEEcCCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCCCEEecCCCcchhhccccccccccchhhhcchh
Confidence 45678999997 3 36666666654 5678888888888887776322111111000 0
Q ss_pred chhhhhhccCCCCceeEEEeccccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647 87 SIAELEQNVAAQSTVDLVTIAQAMHWFDLPQFYNQVKWVLKKPNGVIATWCY 138 (265)
Q Consensus 87 ~~~d~~~~~~~~~~~Dlv~~~~~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~ 138 (265)
....+..+ ...+.+|+|+... . ...+....+.|+ ++|+++....
T Consensus 268 ~~~~~~~~-~~~~g~d~vld~~-----g-~~~~~~~~~~l~-~~G~~v~~g~ 311 (398)
T TIGR01751 268 FGKRIREL-TGGEDPDIVFEHP-----G-RATFPTSVFVCR-RGGMVVICGG 311 (398)
T ss_pred HHHHHHHH-cCCCCceEEEECC-----c-HHHHHHHHHhhc-cCCEEEEEcc
Confidence 00001111 1234588888642 2 246778899999 8999887644
No 496
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=66.95 E-value=21 Score=29.86 Aligned_cols=71 Identities=15% Similarity=0.104 Sum_probs=42.6
Q ss_pred CeEEEEcCCc-chhHHHH-HhcC-CcEEEEcCCHHHHHHHHc------------------------CCCceEEecCCccc
Q 024647 35 ELAWDVGTGS-GQAAASL-SGIF-ENVIGTETSPKQIEFATK------------------------LPNIRYELTSPAMS 87 (265)
Q Consensus 35 ~~vlDvGcG~-G~~~~~l-~~~~-~~v~~vD~s~~~~~~a~~------------------------~~~~~~~~~~~~~~ 87 (265)
.+|+-+|+|- |.++... ++.+ .+++.||.+.--+.-.++ .|+.+....+..+.
T Consensus 31 ~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vTN~NRQi~A~~~~iGk~Kv~vm~eri~~InP~c~V~~~~~f~t 110 (263)
T COG1179 31 AHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHALLGDIGKPKVEVMKERIKQINPECEVTAINDFIT 110 (263)
T ss_pred CcEEEEecCchhHHHHHHHHHcCCCeEEEEecccccccccchhhHhhhhhcccHHHHHHHHHHHhhCCCceEeehHhhhC
Confidence 6789999985 7766654 4444 478888876544322111 15555555554455
Q ss_pred hhhhhhccCCCCceeEEEec
Q 024647 88 IAELEQNVAAQSTVDLVTIA 107 (265)
Q Consensus 88 ~~d~~~~~~~~~~~Dlv~~~ 107 (265)
...++++- ...||.|+-+
T Consensus 111 ~en~~~~~--~~~~DyvIDa 128 (263)
T COG1179 111 EENLEDLL--SKGFDYVIDA 128 (263)
T ss_pred HhHHHHHh--cCCCCEEEEc
Confidence 55555553 3379999854
No 497
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=66.53 E-value=1e+02 Score=27.84 Aligned_cols=38 Identities=24% Similarity=0.310 Sum_probs=28.0
Q ss_pred eEEEEcCCc-c-hhHHHHHhcCCcEEEEcCCHHHHHHHHc
Q 024647 36 LAWDVGTGS-G-QAAASLSGIFENVIGTETSPKQIEFATK 73 (265)
Q Consensus 36 ~vlDvGcG~-G-~~~~~l~~~~~~v~~vD~s~~~~~~a~~ 73 (265)
+|-=||+|. | .++..|++.+.+|+++|.++..++..+.
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~ 41 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNK 41 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhc
Confidence 466688886 3 3444566778899999999998877653
No 498
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=66.31 E-value=48 Score=26.82 Aligned_cols=86 Identities=16% Similarity=0.051 Sum_probs=49.6
Q ss_pred CCCeEEEEcCCcchh--HHHHHhcCCcEEEEcCC--HHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEecc
Q 024647 33 NHELAWDVGTGSGQA--AASLSGIFENVIGTETS--PKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQ 108 (265)
Q Consensus 33 ~~~~vlDvGcG~G~~--~~~l~~~~~~v~~vD~s--~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~ 108 (265)
.+.+||-+|.|.-.. ...|.+.+++|+.+++. +...+.+.. .++.+...... ..| + ..+|+|+++.
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~~-~~i~~~~~~~~--~~d-----l--~~~~lVi~at 77 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTLLAEQ-GGITWLARCFD--ADI-----L--EGAFLVIAAT 77 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHc-CCEEEEeCCCC--HHH-----h--CCcEEEEECC
Confidence 356899999997322 44567788898888665 343333333 46777764321 111 1 3589988763
Q ss_pred ccccCChhHHHHHHHHHhcCCCcEEE
Q 024647 109 AMHWFDLPQFYNQVKWVLKKPNGVIA 134 (265)
Q Consensus 109 ~~~~~~~~~~l~~~~~~Lk~pgG~l~ 134 (265)
+....-..+....+ ..|.++
T Consensus 78 -----~d~~ln~~i~~~a~-~~~ilv 97 (205)
T TIGR01470 78 -----DDEELNRRVAHAAR-ARGVPV 97 (205)
T ss_pred -----CCHHHHHHHHHHHH-HcCCEE
Confidence 22333344555555 456555
No 499
>PRK13771 putative alcohol dehydrogenase; Provisional
Probab=66.00 E-value=45 Score=28.61 Aligned_cols=93 Identities=17% Similarity=0.119 Sum_probs=57.9
Q ss_pred CCCCeEEEEcCC--cchhHHHHHhc-CCcEEEEcCCHHHHHHHHcCCCceEEecCCccchhhhhhccCCCCceeEEEecc
Q 024647 32 TNHELAWDVGTG--SGQAAASLSGI-FENVIGTETSPKQIEFATKLPNIRYELTSPAMSIAELEQNVAAQSTVDLVTIAQ 108 (265)
Q Consensus 32 ~~~~~vlDvGcG--~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~Dlv~~~~ 108 (265)
.++.+||-.|++ .|..+..+++. +.++++++.+++..+.++++ ...+.... . ...++..+ +.+|+++...
T Consensus 161 ~~~~~vlI~g~~g~~g~~~~~la~~~g~~vi~~~~~~~~~~~~~~~-~~~~~~~~-~-~~~~v~~~----~~~d~~ld~~ 233 (334)
T PRK13771 161 KKGETVLVTGAGGGVGIHAIQVAKALGAKVIAVTSSESKAKIVSKY-ADYVIVGS-K-FSEEVKKI----GGADIVIETV 233 (334)
T ss_pred CCCCEEEEECCCccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHH-HHHhcCch-h-HHHHHHhc----CCCcEEEEcC
Confidence 456788888883 47777777764 56899999998888777643 11111110 0 00122222 2588888642
Q ss_pred ccccCChhHHHHHHHHHhcCCCcEEEEEec
Q 024647 109 AMHWFDLPQFYNQVKWVLKKPNGVIATWCY 138 (265)
Q Consensus 109 ~~~~~~~~~~l~~~~~~Lk~pgG~l~~~~~ 138 (265)
. ...+..+.+.|+ ++|+++....
T Consensus 234 g------~~~~~~~~~~l~-~~G~~v~~g~ 256 (334)
T PRK13771 234 G------TPTLEESLRSLN-MGGKIIQIGN 256 (334)
T ss_pred C------hHHHHHHHHHHh-cCCEEEEEec
Confidence 2 235788899999 9999887554
No 500
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=65.25 E-value=33 Score=27.03 Aligned_cols=105 Identities=11% Similarity=0.047 Sum_probs=51.5
Q ss_pred hCCCCcHHHHHHHHhhCCCCCeEEEEcCCcchhHHHHHhcCCc--EEEEcCCHHHHHHHHc---C-----CCceEEecCC
Q 024647 15 TRPNYPEELFKFITSKTTNHELAWDVGTGSGQAAASLSGIFEN--VIGTETSPKQIEFATK---L-----PNIRYELTSP 84 (265)
Q Consensus 15 ~rp~y~~~l~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~--v~~vD~s~~~~~~a~~---~-----~~~~~~~~~~ 84 (265)
.|-.|-++.+.......+....|+.+|||-=.....+...... ++-+|.-+.+....+. . .+.+++..+.
T Consensus 60 ~Rt~~iD~~v~~~i~~~~~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl 139 (183)
T PF04072_consen 60 ARTRYIDDAVREFIAKHPGARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDLPEVIALKRRLLPESGARPPANYRYVPADL 139 (183)
T ss_dssp HHHHHHHHHHHHHHHHHTTESEEEEET-TT--HHHHHHHTTTTEEEEEEE-HHHHHHHHHHHHHTHHHHHEESSEEES-T
T ss_pred HHHHHHHHHHHHhhccCCCCcEEEEcCCCCCchHHHhhccccceEEEEeCCHHHHHHHHHHHHhCcccCCcceeEEeccc
Confidence 3444444444444333244447999999988888788775544 5556654433222221 1 2345666544
Q ss_pred ccchhhhhhc---cCCCCceeEEEeccccccCChhHHHH
Q 024647 85 AMSIAELEQN---VAAQSTVDLVTIAQAMHWFDLPQFYN 120 (265)
Q Consensus 85 ~~~~~d~~~~---~~~~~~~Dlv~~~~~~~~~~~~~~l~ 120 (265)
+. ..-.+.+ .+..+..-++++-.++.|+++..+-.
T Consensus 140 ~~-~~~~~~L~~~g~~~~~ptl~i~Egvl~Yl~~~~~~~ 177 (183)
T PF04072_consen 140 RD-DSWIDALPKAGFDPDRPTLFIAEGVLMYLSPEQVDA 177 (183)
T ss_dssp TS-HHHHHHHHHCTT-TTSEEEEEEESSGGGS-HHHHHH
T ss_pred cc-hhhHHHHHHhCCCCCCCeEEEEcchhhcCCHHHHHH
Confidence 32 0111122 23455667777777888887665443
Done!