BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024648
(265 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OKC|A Chain A, Structure Of Mitochondrial AdpATP CARRIER IN COMPLEX WITH
Carboxyatractyloside
pdb|2C3E|A Chain A, The Bovine Mitochondrial Adp-Atp Carrier
Length = 297
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/232 (25%), Positives = 89/232 (38%), Gaps = 37/232 (15%)
Query: 46 PTVVVKTRMQVAH-----SGVSQMRGL-SVFRNILRNDGIPGIFRGFGTSAVGSMPGRVL 99
P VK +QV H S Q +G+ I + G +RG + + P + L
Sbjct: 27 PIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQAL 86
Query: 100 CLTSLEVSKDMMLKYTEGVD-MPEATRVGVANAVAGMLSNLVSCVYFVPLDVICQRLMVQ 158
+ K + L GVD + R N +G + S + PLD RL
Sbjct: 87 NFAFKDKYKQIFL---GGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAAD 143
Query: 159 GLPGTTY--CNGPIDVVCKVIKSEGFRGLYRGFGLTALTQSPASALWWGAYGAAQHMIWR 216
G G + + K+ KS+G RGLY+GF ++ A ++G Y A+ M
Sbjct: 144 VGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGM--- 200
Query: 217 SLGYGDDMEKPSQSEMI-------TVQASAGMFAGACSTVITTPIDTVKTRL 261
+ P +I TV A AG+ ++ P DTV+ R+
Sbjct: 201 -------LPDPKNVHIIVSWMIAQTVTAVAGL--------VSYPFDTVRRRM 237
>pdb|2LCK|A Chain A, Structure Of The Mitochondrial Uncoupling Protein 2
Determined By Nmr Molecular Fragment Replacement
Length = 303
Score = 36.2 bits (82), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 50/227 (22%), Positives = 89/227 (39%), Gaps = 30/227 (13%)
Query: 46 PTVVVKTRMQ--------VAHSGVSQMRG-LSVFRNILRNDGIPGIFRGFGTSAVGSMPG 96
P K R+Q V + +Q RG L ++R +G ++ G V +
Sbjct: 21 PLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGL----VAGLQ- 75
Query: 97 RVLCLTSLEVSKDMMLK--YTEGVDMPEATRVGVANAVAGMLSNLVSCVYFVPLDVICQR 154
R + S+ + +K YT+G E +G + +AG + ++ P DV+ R
Sbjct: 76 RQMSFASVRIGLYDSVKQFYTKG---SEHAGIG-SRLLAGSTTGALAVAVAQPTDVVKVR 131
Query: 155 LMVQGLPGT-TYCNGPIDVVCKVIKSEGFRGLYRGFGLTALTQSPASALWWGAYGAAQHM 213
Q G ++ + + EG RGL++G + + Y +
Sbjct: 132 FQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDT 191
Query: 214 IWRSLGYGDDMEKPSQSEMITVQASAGMFAGACSTVITTPIDTVKTR 260
+ ++ DD+ ++ AG C+TVI +P+D VKTR
Sbjct: 192 LLKANLMTDDLP---------CHFTSAFGAGFCTTVIASPVDVVKTR 229
>pdb|1QRJ|B Chain B, Solution Structure Of Htlv-I Capsid Protein
Length = 199
Score = 32.0 bits (71), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 51/125 (40%), Gaps = 20/125 (16%)
Query: 135 MLSNLVSCVYFVPLDVICQRLMVQGLPGTTYCNGPIDVVCKVIKSEGFRGLYRGFGLTAL 194
+ S+LV+ ++ LD + +G+ G GP+ V + +G R Y+ L A
Sbjct: 47 LCSSLVASLHHQQLDSLISEAETRGITGYNPLAGPLRVQANNPQQQGLRREYQQLWLAAF 106
Query: 195 TQSPASALWWGAYGAAQHMIWRSLGYGDDMEKPSQS--EMITVQASAGMFAGACSTVITT 252
P G+A+ W S+ G +E+P + E + + G+ G T
Sbjct: 107 AALP---------GSAKDPSWASILQG--LEEPYHAFVERLNIALDNGLPEG-------T 148
Query: 253 PIDTV 257
P D +
Sbjct: 149 PKDPI 153
>pdb|1G03|A Chain A, Nmr Structure Of N-Terminal Domain Of Htlv-I Ca1-134
Length = 134
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 29/67 (43%)
Query: 135 MLSNLVSCVYFVPLDVICQRLMVQGLPGTTYCNGPIDVVCKVIKSEGFRGLYRGFGLTAL 194
+ S+LV+ ++ LD + +G+ GP+ V + +G R Y+ L A
Sbjct: 62 LCSSLVASLHHQQLDSLISEAETRGITSYNPLAGPLRVQANNPQQQGLRREYQQLWLAAF 121
Query: 195 TQSPASA 201
P SA
Sbjct: 122 AALPGSA 128
>pdb|3EUO|A Chain A, Crystal Structure Of A Fungal Type Iii Polyketide
Synthase, Oras
pdb|3EUO|B Chain B, Crystal Structure Of A Fungal Type Iii Polyketide
Synthase, Oras
pdb|3EUT|A Chain A, X-Ray Crystal Structure Of A Type Iii Pentaketide Synthase
From Neurospora Crassa
pdb|3EUT|B Chain B, X-Ray Crystal Structure Of A Type Iii Pentaketide Synthase
From Neurospora Crassa
pdb|3EUT|C Chain C, X-Ray Crystal Structure Of A Type Iii Pentaketide Synthase
From Neurospora Crassa
pdb|3EUT|D Chain D, X-Ray Crystal Structure Of A Type Iii Pentaketide Synthase
From Neurospora Crassa
Length = 379
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 86 FGTSAVGSMPGRVLCLTSLEVSKDMMLKYTEGVDMPEATRVGVA 129
G +A G P R+L L +LEVS M+ E +D + TR+G+A
Sbjct: 158 LGHTARGK-PARILVL-ALEVSTTMVRSELESIDALQETRIGIA 199
>pdb|3EUQ|A Chain A, X-Ray Structural Of A Type Iii Pentaketide Synthase From
Neurospora Crassa
pdb|3EUQ|B Chain B, X-Ray Structural Of A Type Iii Pentaketide Synthase From
Neurospora Crassa
pdb|3EUQ|C Chain C, X-Ray Structural Of A Type Iii Pentaketide Synthase From
Neurospora Crassa
pdb|3EUQ|D Chain D, X-Ray Structural Of A Type Iii Pentaketide Synthase From
Neurospora Crassa
Length = 379
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 86 FGTSAVGSMPGRVLCLTSLEVSKDMMLKYTEGVDMPEATRVGVA 129
G +A G P R+L L +LEVS M+ E +D + TR+G+A
Sbjct: 158 LGHTARGK-PARILVL-ALEVSTTMVRSELESIDALQETRIGIA 199
>pdb|3FBL|A Chain A, Crystal Structure Of Orf132 Of The Archaeal Virus
Acidianus Filamentous Virus 1 (Afv1)
Length = 82
Score = 29.3 bits (64), Expect = 2.1, Method: Composition-based stats.
Identities = 18/78 (23%), Positives = 36/78 (46%), Gaps = 8/78 (10%)
Query: 71 RNILRNDGIP----GIFRGFGTSAVGSMPGRVLCLTSLEVSKDMMLKYTEGVDMPEATRV 126
+ I + DGIP G++ FG + S L + + S DM+ +Y ++R
Sbjct: 9 KEICKTDGIPNIKWGMYIAFGEKLLKSY----LKMKAGSASSDMIAEYINNAISAFSSRT 64
Query: 127 GVANAVAGMLSNLVSCVY 144
G++ A +++ ++ Y
Sbjct: 65 GISQETAQKIADFITSNY 82
>pdb|3E1H|A Chain A, Crystal Structure Of A Type Iii Polyketide Synthase
Pksiiinc From Neurospora Crassa
pdb|3E1H|B Chain B, Crystal Structure Of A Type Iii Polyketide Synthase
Pksiiinc From Neurospora Crassa
Length = 465
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 86 FGTSAVGSMPGRVLCLTSLEVSKDMMLKYTEGVDMPEATRVGVA 129
G +A G P R+L L +LEVS M+ E +D + TR+G+A
Sbjct: 187 LGHTARGK-PARILVL-ALEVSTTMVRSELESIDALQETRIGIA 228
>pdb|3GPD|R Chain R, Twinning In Crystals Of Human Skeletal Muscle
D-Glyceraldehyde-3- Phosphate Dehydrogenase
pdb|3GPD|G Chain G, Twinning In Crystals Of Human Skeletal Muscle
D-Glyceraldehyde-3- Phosphate Dehydrogenase
Length = 334
Score = 28.1 bits (61), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 27/63 (42%), Gaps = 9/63 (14%)
Query: 163 TTYCNGPIDVVCKVIKS-----EGFRGLYRGFGLTALT-QSPASALWWGAYGAAQHMIWR 216
TT C P+ KVI EG T T SP+ LW G GAAQ++I
Sbjct: 152 TTNCLAPL---AKVIHDHFGIVEGLMTTVHAITATQKTVDSPSGKLWRGGRGAAQNLIPA 208
Query: 217 SLG 219
S G
Sbjct: 209 STG 211
>pdb|3C5V|A Chain A, Pp2a-Specific Methylesterase Apo Form (Pme)
Length = 316
Score = 27.3 bits (59), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 5/94 (5%)
Query: 33 GAILFTAQSALLHPTVVVKTRMQVAHSGVSQMRGLSVFRNILRNDGIPGIFRGFGTSAVG 92
GAI S+ L P+++ + V + M L+ +N LR G P F+ +
Sbjct: 121 GAIAVHTASSNLVPSLLGLCMIDVVEG--TAMDALNSMQNFLR--GRPKTFKSLENAIEW 176
Query: 93 SMP-GRVLCLTSLEVSKDMMLKYTEGVDMPEATR 125
S+ G++ L S VS +K EG+ PE ++
Sbjct: 177 SVKSGQIRNLESARVSMVGQVKQCEGITSPEGSK 210
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.136 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,988,171
Number of Sequences: 62578
Number of extensions: 279923
Number of successful extensions: 540
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 530
Number of HSP's gapped (non-prelim): 11
length of query: 265
length of database: 14,973,337
effective HSP length: 97
effective length of query: 168
effective length of database: 8,903,271
effective search space: 1495749528
effective search space used: 1495749528
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.9 bits)