Query 024648
Match_columns 265
No_of_seqs 155 out of 1683
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 11:59:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024648.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024648hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1okc_A ADP, ATP carrier protei 100.0 9.8E-48 3.3E-52 322.9 19.5 227 25-264 6-240 (297)
2 2lck_A Mitochondrial uncouplin 100.0 3.2E-47 1.1E-51 320.6 17.2 221 28-264 3-233 (303)
3 2lck_A Mitochondrial uncouplin 100.0 1.2E-38 4.2E-43 268.2 12.1 185 24-217 102-289 (303)
4 1okc_A ADP, ATP carrier protei 100.0 8E-37 2.7E-41 256.5 16.4 178 27-213 113-296 (297)
5 2acm_A Mucin-1; auto-catalytic 28.7 14 0.00048 21.9 0.3 20 167-186 40-59 (66)
6 1y9i_A Low temperature require 26.7 74 0.0025 23.6 3.9 48 198-249 111-158 (178)
7 3tgu_G UQCRQ, mitochondrial ub 22.6 93 0.0032 19.7 3.4 39 180-218 32-70 (81)
8 3vjj_A P9-1; 3.00A {Rice black 18.9 52 0.0018 26.3 1.9 45 140-195 274-318 (368)
9 2z5i_I TM, tropomyosin alpha-1 14.1 53 0.0018 17.8 0.6 11 253-263 4-14 (40)
10 1pp9_G Ubiquinol-cytochrome C 12.6 1.9E+02 0.0066 18.2 3.0 39 180-218 32-70 (81)
No 1
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=9.8e-48 Score=322.93 Aligned_cols=227 Identities=21% Similarity=0.277 Sum_probs=195.3
Q ss_pred ChhHHHHHHHHHHHHHHHhhccHHHHHHHHhhccc------CCCCCchHHHHHHHHHhcCcccccccchhhhhhccchhH
Q 024648 25 DKTRFHIIGAILFTAQSALLHPTVVVKTRMQVAHS------GVSQMRGLSVFRNILRNDGIPGIFRGFGTSAVGSMPGRV 98 (265)
Q Consensus 25 ~~~~~~~~g~~a~~~~~~~~~Pld~vk~r~q~~~~------~~~~~~~~~~~~~i~~~~G~~gly~G~~~~~~~~~~~~~ 98 (265)
+..+.+++|+++++++.++++|+|+||+|+|++.. ...|++.++++++++++||++|||||+.+++++.++..+
T Consensus 6 ~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~ 85 (297)
T 1okc_A 6 SFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQA 85 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHHHHH
Confidence 45678999999999999999999999999999864 235789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhccCCCCChhhhhhHHHHHHHHHHHHhhhhhcccHHHHHHHHHhhCCC--CCcccCchHHHHHHH
Q 024648 99 LCLTSLEVSKDMMLKYTEGVDMPEATRVGVANAVAGMLSNLVSCVYFVPLDVICQRLMVQGLP--GTTYCNGPIDVVCKV 176 (265)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~v~~Pld~ik~r~q~~~~~--~~~~y~~~~~~~~~i 176 (265)
++|.+||.+|+.+....... ..........+++|.++++++.++++|+|+||+|+|.+... ....|++++++++++
T Consensus 86 ~~f~~ye~~k~~~~~~~~~~--~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~~i 163 (297)
T 1okc_A 86 LNFAFKDKYKQIFLGGVDRH--KQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKI 163 (297)
T ss_dssp HHHHHHHHHHHHHHTTCCTT--TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccCcc--cchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCCHHHHHHHH
Confidence 99999999999654322111 11223456788999999999999999999999999998532 245789999999999
Q ss_pred HhhcccccccccchhhHhhhhhhHHHHHHHHHHHHHHHHhhcCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCcHHH
Q 024648 177 IKSEGFRGLYRGFGLTALTQSPASALWWGAYGAAQHMIWRSLGYGDDMEKPSQSEMITVQASAGMFAGACSTVITTPIDT 256 (265)
Q Consensus 177 ~~~~G~~glyrG~~~~~l~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~~t~Pldv 256 (265)
+++||++|||||+.+++++.+|+++++|.+||.+|+.+.+.. .......+++|++||++++++++|+||
T Consensus 164 ~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~~-----------~~~~~~~~~~g~~ag~~a~~~t~P~dv 232 (297)
T 1okc_A 164 FKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPK-----------NVHIIVSWMIAQTVTAVAGLVSYPFDT 232 (297)
T ss_dssp HHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGGG-----------CSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccCC-----------CccHHHHHHHHHHHHHHHHHhcChHHH
Confidence 999999999999999999999999999999999999653321 112456689999999999999999999
Q ss_pred HHHhhhcc
Q 024648 257 VKTRLQVA 264 (265)
Q Consensus 257 vktr~q~~ 264 (265)
||+|||++
T Consensus 233 vktr~q~~ 240 (297)
T 1okc_A 233 VRRRMMMQ 240 (297)
T ss_dssp HHHHHHTT
T ss_pred HHHHHhhc
Confidence 99999976
No 2
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=3.2e-47 Score=320.56 Aligned_cols=221 Identities=18% Similarity=0.240 Sum_probs=194.7
Q ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHhhcccC---------CCCCchHHHHHHHHHhcCcccccccchhhhhhccchhH
Q 024648 28 RFHIIGAILFTAQSALLHPTVVVKTRMQVAHSG---------VSQMRGLSVFRNILRNDGIPGIFRGFGTSAVGSMPGRV 98 (265)
Q Consensus 28 ~~~~~g~~a~~~~~~~~~Pld~vk~r~q~~~~~---------~~~~~~~~~~~~i~~~~G~~gly~G~~~~~~~~~~~~~ 98 (265)
..+++|+++++++.+++||+|+||+|+|++... ..|++.++++++++++||++|||||+.+++++.++..+
T Consensus 3 ~~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~ 82 (303)
T 2lck_A 3 VKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFAS 82 (303)
T ss_dssp CHHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHH
T ss_pred hhHHhHHHHHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHH
Confidence 478999999999999999999999999998652 35889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhccCCCCChhhhhhHHHHHHHHHHHHhhhhhcccHHHHHHHHHhhCCC-CCcccCchHHHHHHHH
Q 024648 99 LCLTSLEVSKDMMLKYTEGVDMPEATRVGVANAVAGMLSNLVSCVYFVPLDVICQRLMVQGLP-GTTYCNGPIDVVCKVI 177 (265)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~v~~Pld~ik~r~q~~~~~-~~~~y~~~~~~~~~i~ 177 (265)
++|.+||.+|+.+.+... . ......+++|.++++++.++++|+|+||+|+|.+... ....|+++++++++|+
T Consensus 83 i~f~~ye~~k~~~~~~~~--~-----~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~i~ 155 (303)
T 2lck_A 83 VRIGLYDSVKQFYTKGSE--H-----AGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIA 155 (303)
T ss_dssp HTTTHHHHHHHHHSCCCS--S-----CCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCCSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCc--C-----CcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCCCCCCCCHHHHHHHHH
Confidence 999999999998864311 1 2356778999999999999999999999999998642 3457899999999999
Q ss_pred hhcccccccccchhhHhhhhhhHHHHHHHHHHHHHHHHhhcCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHhcCcHHHH
Q 024648 178 KSEGFRGLYRGFGLTALTQSPASALWWGAYGAAQHMIWRSLGYGDDMEKPSQSEMITVQASAGMFAGACSTVITTPIDTV 257 (265)
Q Consensus 178 ~~~G~~glyrG~~~~~l~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~~t~Pldvv 257 (265)
++||++|||||+.+++++.+|+.+++|.+||.+|+.+.+... ........+++|++||++++++++|+|||
T Consensus 156 ~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~~---------~~~~~~~~~~~g~~ag~~~~~~~~P~dvv 226 (303)
T 2lck_A 156 REEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANL---------MTDDLPCHFTSAFGAGFCTTVIASPVDVV 226 (303)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTS---------CCSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhccC---------CCCchHHHHHHHHHHHHHHHHHcCHHHHH
Confidence 999999999999999999999999999999999998754311 01123467899999999999999999999
Q ss_pred HHhhhcc
Q 024648 258 KTRLQVA 264 (265)
Q Consensus 258 ktr~q~~ 264 (265)
|+|||++
T Consensus 227 ktrlq~~ 233 (303)
T 2lck_A 227 KTRYMNS 233 (303)
T ss_dssp HHHHTTC
T ss_pred HHHHHhc
Confidence 9999986
No 3
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=1.2e-38 Score=268.16 Aligned_cols=185 Identities=19% Similarity=0.264 Sum_probs=165.9
Q ss_pred CChhHHHHHHHHHHHHHHHhhccHHHHHHHHhhccc---CCCCCchHHHHHHHHHhcCcccccccchhhhhhccchhHHH
Q 024648 24 LDKTRFHIIGAILFTAQSALLHPTVVVKTRMQVAHS---GVSQMRGLSVFRNILRNDGIPGIFRGFGTSAVGSMPGRVLC 100 (265)
Q Consensus 24 ~~~~~~~~~g~~a~~~~~~~~~Pld~vk~r~q~~~~---~~~~~~~~~~~~~i~~~~G~~gly~G~~~~~~~~~~~~~~~ 100 (265)
.+....+++|+++++++.++++|+|+||+|+|++.. ...|++.++++++++++||++|||||+.+++++.++..+++
T Consensus 102 ~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~ 181 (303)
T 2lck_A 102 AGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAE 181 (303)
T ss_dssp CCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCCSSSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCCCCCCCCHHHHHHHHHHhcChhhhhCCccHHHHHHHHHHHHH
Confidence 556789999999999999999999999999999864 34688999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhccCCCCChhhhhhHHHHHHHHHHHHhhhhhcccHHHHHHHHHhhCCCCCcccCchHHHHHHHHhhc
Q 024648 101 LTSLEVSKDMMLKYTEGVDMPEATRVGVANAVAGMLSNLVSCVYFVPLDVICQRLMVQGLPGTTYCNGPIDVVCKVIKSE 180 (265)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~v~~Pld~ik~r~q~~~~~~~~~y~~~~~~~~~i~~~~ 180 (265)
|.+||.+|+.+.+.... + ......+++|++|+++++++++|+|+||+|||.+.. ..|+++++|+++++++|
T Consensus 182 f~~ye~~k~~l~~~~~~---~---~~~~~~~~~g~~ag~~~~~~~~P~dvvktrlq~~~~---~~y~~~~~~~~~i~~~e 252 (303)
T 2lck_A 182 LVTYDLIKDTLLKANLM---T---DDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSAL---GQYHSAGHCALTMLRKE 252 (303)
T ss_dssp HHHHHHHHHTTTTTTSC---C---SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCS---SSCCSHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHhccCC---C---CchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhccc---cccCCHHHHHHHHHHHc
Confidence 99999999988654221 1 124567899999999999999999999999999853 36999999999999999
Q ss_pred ccccccccchhhHhhhhhhHHHHHHHHHHHHHHHHhh
Q 024648 181 GFRGLYRGFGLTALTQSPASALWWGAYGAAQHMIWRS 217 (265)
Q Consensus 181 G~~glyrG~~~~~l~~~~~~~~~~~~y~~~~~~~~~~ 217 (265)
|++|||||+.++++|.+|..+++|.+||.+|+++.+.
T Consensus 253 G~~glyrG~~~~~~r~~p~~~i~f~~ye~~k~~l~~~ 289 (303)
T 2lck_A 253 GPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALMAA 289 (303)
T ss_dssp CTHHHHSCCHHHHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred ChHHhhccHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999876544
No 4
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=8e-37 Score=256.46 Aligned_cols=178 Identities=17% Similarity=0.234 Sum_probs=155.5
Q ss_pred hHHHHHHHHHHHHHHHhhccHHHHHHHHhhccc----CCCCCchHHHHHHHHHhcCcccccccchhhhhhccchhHHHHH
Q 024648 27 TRFHIIGAILFTAQSALLHPTVVVKTRMQVAHS----GVSQMRGLSVFRNILRNDGIPGIFRGFGTSAVGSMPGRVLCLT 102 (265)
Q Consensus 27 ~~~~~~g~~a~~~~~~~~~Pld~vk~r~q~~~~----~~~~~~~~~~~~~i~~~~G~~gly~G~~~~~~~~~~~~~~~~~ 102 (265)
...+++|+++++++.++++|+|+||+|+|++.. ...|++.++++++++++||++|||||+.+++++.++..+++|.
T Consensus 113 ~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~ 192 (297)
T 1okc_A 113 AGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFG 192 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCCHHHHHHHHHHhccHHHhcCCchHHHHHHHHHHHHHHH
Confidence 567899999999999999999999999999853 2457899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccCCCCChhhhhhHHHHHHHHHHHHhhhhhcccHHHHHHHHHhhCCC--CCcccCchHHHHHHHHhhc
Q 024648 103 SLEVSKDMMLKYTEGVDMPEATRVGVANAVAGMLSNLVSCVYFVPLDVICQRLMVQGLP--GTTYCNGPIDVVCKVIKSE 180 (265)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~v~~Pld~ik~r~q~~~~~--~~~~y~~~~~~~~~i~~~~ 180 (265)
+||.+|+.+.+... ......+++|++++++++++++|+|+||+|||.+... ....|+++++|+++++++|
T Consensus 193 ~ye~~k~~~~~~~~--------~~~~~~~~~g~~ag~~a~~~t~P~dvvktr~q~~~~~~~~~~~y~~~~~~~~~i~~~e 264 (297)
T 1okc_A 193 VYDTAKGMLPDPKN--------VHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDE 264 (297)
T ss_dssp HHHHHHHSSCGGGC--------SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCGGGCSCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCC--------ccHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHc
Confidence 99999997643211 1245678899999999999999999999999998542 2347999999999999999
Q ss_pred ccccccccchhhHhhhhhhHHHHHHHHHHHHHH
Q 024648 181 GFRGLYRGFGLTALTQSPASALWWGAYGAAQHM 213 (265)
Q Consensus 181 G~~glyrG~~~~~l~~~~~~~~~~~~y~~~~~~ 213 (265)
|++|||||+.++++|. +..+++|.+||.+|++
T Consensus 265 G~~glyrG~~~~~~r~-~~~~~~f~~ye~~k~~ 296 (297)
T 1okc_A 265 GPKAFFKGAWSNVLRG-MGGAFVLVLYDEIKKF 296 (297)
T ss_dssp CGGGGGTTHHHHHHHH-HHHHHHHHHHHTC---
T ss_pred CcCeEecchHHHHHhh-ccceeeehHHHHHHhh
Confidence 9999999999999995 5789999999999875
No 5
>2acm_A Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=28.72 E-value=14 Score=21.85 Aligned_cols=20 Identities=25% Similarity=0.426 Sum_probs=17.1
Q ss_pred CchHHHHHHHHhhccccccc
Q 024648 167 NGPIDVVCKVIKSEGFRGLY 186 (265)
Q Consensus 167 ~~~~~~~~~i~~~~G~~gly 186 (265)
+++.+.+.+||+++|+.||+
T Consensus 40 r~is~L~lqIykq~~FLgl~ 59 (66)
T 2acm_A 40 RDISEMFLQIYKQGGFLGLS 59 (66)
T ss_dssp HHHHHHHHHHCTTTTEEEEE
T ss_pred HHHHHHHHHHHccCCeeeee
Confidence 46778899999999998886
No 6
>1y9i_A Low temperature requirement C protein; structural genomics, protein structure initiative, PSI; 1.80A {Listeria monocytogenes} SCOP: a.195.1.1
Probab=26.65 E-value=74 Score=23.57 Aligned_cols=48 Identities=15% Similarity=0.063 Sum_probs=31.9
Q ss_pred hhHHHHHHHHHHHHHHHHhhcCCCCCCCCCChhhHHHHHHHHHHHHHHHHHH
Q 024648 198 PASALWWGAYGAAQHMIWRSLGYGDDMEKPSQSEMITVQASAGMFAGACSTV 249 (265)
Q Consensus 198 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~ 249 (265)
....+.|..||..|.+...+.+.... .....++.++++|+.|+++..+
T Consensus 111 ~~gf~~Fr~fDi~KPgpI~~ld~~~~----gg~gimlDDivAgi~A~~~~~l 158 (178)
T 1y9i_A 111 SIGFTNYGYIDKVKPGILAKLNEHDG----IAVHTFLDDIVGAIAAAAASRL 158 (178)
T ss_dssp GGGHHHHHHHHHHCCTHHHHTTCCCS----SCCCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccchhHHhhhcccC----CCCcchHHHHHHHHHHHHHHHH
Confidence 35567888999999887776553322 2223466778888888876644
No 7
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=22.62 E-value=93 Score=19.73 Aligned_cols=39 Identities=13% Similarity=0.150 Sum_probs=29.5
Q ss_pred cccccccccchhhHhhhhhhHHHHHHHHHHHHHHHHhhc
Q 024648 180 EGFRGLYRGFGLTALTQSPASALWWGAYGAAQHMIWRSL 218 (265)
Q Consensus 180 ~G~~glyrG~~~~~l~~~~~~~~~~~~y~~~~~~~~~~~ 218 (265)
.|+...+|-+..+++..+|...+.+.+|+-.++......
T Consensus 32 ~~i~N~~RR~~~q~l~v~pPfi~~Y~i~~Wa~~~ne~l~ 70 (81)
T 3tgu_G 32 DALPNVWRRFSSQVFKVAPPFLGAYLLYSWGTQEFERLK 70 (81)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHh
Confidence 445555666777788888999999999998888776553
No 8
>3vjj_A P9-1; 3.00A {Rice black streaked dwarf virus}
Probab=18.91 E-value=52 Score=26.27 Aligned_cols=45 Identities=18% Similarity=0.239 Sum_probs=27.4
Q ss_pred hhhhhcccHHHHHHHHHhhCCCCCcccCchHHHHHHHHhhcccccccccchhhHhh
Q 024648 140 VSCVYFVPLDVICQRLMVQGLPGTTYCNGPIDVVCKVIKSEGFRGLYRGFGLTALT 195 (265)
Q Consensus 140 ~~~~v~~Pld~ik~r~q~~~~~~~~~y~~~~~~~~~i~~~~G~~glyrG~~~~~l~ 195 (265)
++++=-||||.+|-.++.. -++.+.+++.+.++| ||+-...+-++
T Consensus 274 LaTFdnypfdllRfqL~Sl--------istp~~I~e~i~K~G---LFk~it~~~~r 318 (368)
T 3vjj_A 274 LATFDNYPFDLLRFQLSSL--------ISTPALIREKIAKEG---LFKIITSNTLR 318 (368)
T ss_dssp HHHCTTCBHHHHHHHCSSC--------CCCCHHHHHHHHHSC---SEEECC-----
T ss_pred eecCCCCCHHHHHHHhhhh--------ccChHHHHHHHHhcC---ceEEEeccccc
Confidence 3456678999998866544 344588899999985 44444444333
No 9
>2z5i_I TM, tropomyosin alpha-1 chain and general control protein GCN4; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Oryctolagus cuniculus} PDB: 2z5h_I 2g9j_A 1tmz_A
Probab=14.10 E-value=53 Score=17.76 Aligned_cols=11 Identities=27% Similarity=0.739 Sum_probs=8.5
Q ss_pred cHHHHHHhhhc
Q 024648 253 PIDTVKTRLQV 263 (265)
Q Consensus 253 Pldvvktr~q~ 263 (265)
-+|.||.+||.
T Consensus 4 ~MdAIKKKMq~ 14 (40)
T 2z5i_I 4 SMDAIKKKMQM 14 (40)
T ss_dssp -CHHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 47899999884
No 10
>1pp9_G Ubiquinol-cytochrome C reductase complex ubiquino protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.13.1 PDB: 1bgy_G* 1be3_G* 1l0n_G* 1ntk_G* 1ntm_G* 1ntz_G* 1nu1_G* 1l0l_G* 1ppj_G* 1sqb_G* 1sqp_G* 1sqq_G* 1sqv_G* 1sqx_G* 2a06_G* 2fyu_G* 2ybb_G* 1bcc_G* 2bcc_G* 3bcc_G* ...
Probab=12.58 E-value=1.9e+02 Score=18.21 Aligned_cols=39 Identities=15% Similarity=0.183 Sum_probs=29.8
Q ss_pred cccccccccchhhHhhhhhhHHHHHHHHHHHHHHHHhhc
Q 024648 180 EGFRGLYRGFGLTALTQSPASALWWGAYGAAQHMIWRSL 218 (265)
Q Consensus 180 ~G~~glyrG~~~~~l~~~~~~~~~~~~y~~~~~~~~~~~ 218 (265)
.|+...+|-+..+++..+|...+.+.+|+-.++......
T Consensus 32 ~~i~n~~RR~~~~~l~v~pPfv~~Y~i~~Wa~~~~e~~~ 70 (81)
T 1pp9_G 32 KGIPNVLRRTRACILRVAPPFVAFYLVYTWGTQEFEKSK 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhhHHHHHHHhcceeeehhHHHHHHHHHHHHHHHHHHh
Confidence 455556666777888888888899999998888776553
Done!