Query 024649
Match_columns 265
No_of_seqs 188 out of 858
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 06:20:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024649.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024649hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2234 Predicted UDP-galactos 100.0 1.3E-46 2.8E-51 342.9 23.2 217 46-263 15-241 (345)
2 PF04142 Nuc_sug_transp: Nucle 100.0 1.1E-34 2.4E-39 258.1 16.4 152 112-264 10-173 (244)
3 KOG3912 Predicted integral mem 99.8 2.1E-19 4.6E-24 159.7 19.2 204 48-253 5-225 (372)
4 PF06027 DUF914: Eukaryotic pr 99.7 7.3E-16 1.6E-20 142.8 21.4 145 116-263 76-224 (334)
5 TIGR00803 nst UDP-galactose tr 99.7 3.6E-16 7.7E-21 136.7 12.1 140 121-262 1-142 (222)
6 PF08449 UAA: UAA transporter 99.6 4.7E-13 1E-17 122.4 22.8 189 57-256 11-205 (303)
7 PTZ00343 triose or hexose phos 99.4 6.3E-11 1.4E-15 110.8 25.5 186 56-255 59-249 (350)
8 TIGR00817 tpt Tpt phosphate/ph 99.4 7.2E-11 1.6E-15 107.6 22.8 183 55-253 11-193 (302)
9 PLN00411 nodulin MtN21 family 99.4 9E-11 2E-15 110.2 21.9 177 48-232 15-217 (358)
10 TIGR00950 2A78 Carboxylate/Ami 99.3 8.9E-10 1.9E-14 97.5 20.6 133 118-255 45-178 (260)
11 PRK11272 putative DMT superfam 99.2 4.1E-09 8.9E-14 95.8 23.2 181 48-249 10-192 (292)
12 PRK15430 putative chlorampheni 99.2 2.8E-09 6E-14 97.2 20.5 186 46-249 8-193 (296)
13 TIGR00688 rarD rarD protein. T 99.2 2.9E-09 6.3E-14 94.7 19.5 165 48-228 4-170 (256)
14 PRK11453 O-acetylserine/cystei 99.2 1.5E-08 3.3E-13 92.4 24.3 163 48-231 6-170 (299)
15 PRK11689 aromatic amino acid e 99.0 1.3E-07 2.8E-12 86.1 20.8 168 48-231 6-183 (295)
16 COG0697 RhaT Permeases of the 98.9 1.5E-06 3.2E-11 77.1 23.5 170 46-227 7-177 (292)
17 KOG1444 Nucleotide-sugar trans 98.8 7.3E-07 1.6E-11 81.4 17.5 171 48-231 14-184 (314)
18 TIGR03340 phn_DUF6 phosphonate 98.7 2.2E-06 4.8E-11 77.4 20.3 104 121-228 65-168 (281)
19 KOG1443 Predicted integral mem 98.7 3.7E-07 8.1E-12 82.9 14.4 182 41-231 7-191 (349)
20 PRK10532 threonine and homoser 98.7 9.1E-06 2E-10 74.0 22.1 164 46-231 12-175 (293)
21 PF00892 EamA: EamA-like trans 98.6 5.4E-07 1.2E-11 70.0 10.4 121 58-189 3-124 (126)
22 KOG1581 UDP-galactose transpor 98.6 3.1E-05 6.8E-10 70.5 22.1 171 77-257 50-224 (327)
23 PF13536 EmrE: Multidrug resis 98.5 9.1E-07 2E-11 69.5 9.1 71 123-194 38-109 (113)
24 KOG2766 Predicted membrane pro 98.5 1.6E-08 3.5E-13 89.7 -1.5 133 121-256 80-215 (336)
25 COG2510 Predicted membrane pro 98.4 7.3E-06 1.6E-10 65.8 11.7 131 52-191 9-139 (140)
26 KOG1441 Glucose-6-phosphate/ph 98.4 3.6E-06 7.7E-11 77.8 10.8 108 119-231 83-190 (316)
27 PF03151 TPT: Triose-phosphate 98.3 2.1E-05 4.5E-10 64.0 14.1 135 54-189 8-151 (153)
28 KOG2765 Predicted membrane pro 98.2 2.2E-05 4.8E-10 73.2 13.4 121 123-246 163-287 (416)
29 TIGR00776 RhaT RhaT L-rhamnose 98.2 0.00036 7.8E-09 63.7 20.5 105 122-226 62-174 (290)
30 PRK15051 4-amino-4-deoxy-L-ara 98.1 2.1E-05 4.6E-10 62.0 9.0 69 122-190 40-108 (111)
31 TIGR00950 2A78 Carboxylate/Ami 98.0 0.00044 9.6E-09 61.0 17.0 132 46-187 128-260 (260)
32 KOG1583 UDP-N-acetylglucosamin 98.0 3.2E-06 6.9E-11 76.0 3.1 113 120-232 65-192 (330)
33 KOG1580 UDP-galactose transpor 98.0 4.6E-05 9.9E-10 67.4 9.0 135 119-254 85-221 (337)
34 PRK11431 multidrug efflux syst 97.8 0.00016 3.4E-09 56.5 9.0 73 120-192 30-103 (105)
35 PRK10650 multidrug efflux syst 97.8 0.00016 3.5E-09 56.9 8.7 72 119-190 35-107 (109)
36 COG5070 VRG4 Nucleotide-sugar 97.8 0.00027 5.9E-09 62.1 10.4 194 55-261 11-212 (309)
37 PTZ00343 triose or hexose phos 97.8 0.00099 2.1E-08 62.4 14.9 70 121-190 278-347 (350)
38 PRK10452 multidrug efflux syst 97.7 0.00022 4.7E-09 57.0 8.9 73 121-193 32-105 (120)
39 COG2076 EmrE Membrane transpor 97.7 0.00021 4.4E-09 55.8 8.1 73 120-192 31-104 (106)
40 COG2962 RarD Predicted permeas 97.7 0.0059 1.3E-07 55.5 18.1 123 112-244 65-187 (293)
41 PRK09541 emrE multidrug efflux 97.7 0.0003 6.6E-09 55.4 8.7 74 120-193 31-105 (110)
42 TIGR00817 tpt Tpt phosphate/ph 97.7 0.00064 1.4E-08 61.9 11.8 70 124-193 225-295 (302)
43 PRK11689 aromatic amino acid e 97.6 0.0027 5.8E-08 57.8 15.4 77 116-192 212-288 (295)
44 KOG4314 Predicted carbohydrate 97.6 0.00065 1.4E-08 58.8 10.3 109 120-231 53-162 (290)
45 TIGR03340 phn_DUF6 phosphonate 97.6 0.00087 1.9E-08 60.5 11.2 65 124-188 216-280 (281)
46 PLN00411 nodulin MtN21 family 97.5 0.0051 1.1E-07 58.0 16.4 63 131-193 268-330 (358)
47 PRK10532 threonine and homoser 97.5 0.0061 1.3E-07 55.4 16.3 64 129-192 219-282 (293)
48 TIGR00776 RhaT RhaT L-rhamnose 97.4 0.003 6.5E-08 57.6 12.3 74 118-191 210-288 (290)
49 PRK02971 4-amino-4-deoxy-L-ara 97.3 0.0013 2.9E-08 53.2 8.6 67 127-193 56-124 (129)
50 PRK11453 O-acetylserine/cystei 97.3 0.015 3.2E-07 53.0 16.5 63 130-192 226-288 (299)
51 KOG1442 GDP-fucose transporter 97.3 0.00079 1.7E-08 60.8 7.6 142 117-264 103-245 (347)
52 PRK11272 putative DMT superfam 97.3 0.0099 2.1E-07 54.0 14.9 76 117-192 210-286 (292)
53 PF08449 UAA: UAA transporter 97.3 0.0062 1.3E-07 55.7 13.5 143 47-192 155-298 (303)
54 PF06800 Sugar_transport: Suga 97.3 0.01 2.2E-07 53.8 14.5 143 72-225 9-159 (269)
55 KOG4510 Permease of the drug/m 97.2 0.00084 1.8E-08 60.5 6.9 107 124-230 102-217 (346)
56 PF05653 Mg_trans_NIPA: Magnes 97.0 0.019 4.2E-07 52.8 13.6 66 127-192 58-123 (300)
57 PF00893 Multi_Drug_Res: Small 97.0 0.0036 7.7E-08 47.6 7.2 61 122-182 32-93 (93)
58 PF10639 UPF0546: Uncharacteri 96.9 0.004 8.6E-08 49.3 7.2 70 120-189 42-112 (113)
59 COG5006 rhtA Threonine/homoser 96.8 0.0039 8.5E-08 55.8 7.0 59 131-189 222-280 (292)
60 KOG1582 UDP-galactose transpor 96.7 0.0071 1.5E-07 54.8 7.8 182 39-232 36-218 (367)
61 PRK15430 putative chlorampheni 96.6 0.0095 2.1E-07 54.2 8.5 65 128-192 222-286 (296)
62 PF06800 Sugar_transport: Suga 96.3 0.094 2E-06 47.6 12.8 119 44-178 136-254 (269)
63 KOG1441 Glucose-6-phosphate/ph 96.3 0.01 2.2E-07 55.0 6.4 72 119-190 235-306 (316)
64 COG0697 RhaT Permeases of the 96.2 0.32 6.9E-06 42.7 15.5 78 115-192 210-288 (292)
65 TIGR00803 nst UDP-galactose tr 96.0 0.012 2.6E-07 51.2 5.2 67 122-188 155-221 (222)
66 KOG2922 Uncharacterized conser 95.5 0.093 2E-06 48.5 9.0 66 127-192 72-137 (335)
67 PRK13499 rhamnose-proton sympo 94.3 4.8 0.0001 37.9 19.3 139 115-254 69-233 (345)
68 KOG1580 UDP-galactose transpor 94.0 0.092 2E-06 46.9 4.9 71 119-189 241-311 (337)
69 COG5006 rhtA Threonine/homoser 93.8 1.3 2.8E-05 40.1 11.7 106 115-228 67-172 (292)
70 PF03151 TPT: Triose-phosphate 93.7 0.33 7.2E-06 39.1 7.4 57 205-261 1-61 (153)
71 PF06027 DUF914: Eukaryotic pr 93.2 4.5 9.6E-05 37.9 15.0 64 131-194 245-308 (334)
72 PRK13499 rhamnose-proton sympo 92.3 4.8 0.0001 37.9 13.8 76 116-192 257-342 (345)
73 KOG1581 UDP-galactose transpor 90.6 2.4 5.2E-05 39.2 9.6 70 119-188 241-310 (327)
74 PF04657 DUF606: Protein of un 90.0 9.1 0.0002 31.1 14.7 122 53-188 12-138 (138)
75 COG2962 RarD Predicted permeas 89.5 17 0.00037 33.4 14.8 128 54-192 156-284 (293)
76 PF04142 Nuc_sug_transp: Nucle 76.4 56 0.0012 29.0 14.7 57 123-179 185-241 (244)
77 KOG4831 Unnamed protein [Funct 75.7 3.9 8.4E-05 32.1 3.5 69 120-188 53-122 (125)
78 COG3238 Uncharacterized protei 73.7 51 0.0011 27.4 11.7 127 53-192 16-147 (150)
79 COG4975 GlcU Putative glucose 72.3 1 2.2E-05 40.6 -0.5 63 117-179 207-269 (288)
80 COG5070 VRG4 Nucleotide-sugar 70.5 39 0.00086 30.3 9.0 129 53-190 162-295 (309)
81 KOG4510 Permease of the drug/m 67.9 14 0.00031 33.8 5.8 77 112-188 246-322 (346)
82 TIGR00688 rarD rarD protein. T 64.5 24 0.00053 30.9 6.7 49 118-166 207-255 (256)
83 COG2149 Predicted membrane pro 62.0 59 0.0013 25.9 7.6 58 174-231 29-89 (120)
84 KOG1443 Predicted integral mem 59.0 20 0.00043 33.4 5.2 71 119-189 243-313 (349)
85 PF05297 Herpes_LMP1: Herpesvi 58.6 3.2 7E-05 38.1 0.0 98 136-238 40-139 (381)
86 KOG1444 Nucleotide-sugar trans 53.6 74 0.0016 29.6 8.0 75 119-193 228-302 (314)
87 PF04342 DUF486: Protein of un 50.7 23 0.0005 27.7 3.6 32 157-188 74-105 (108)
88 KOG1583 UDP-N-acetylglucosamin 47.7 1.2E+02 0.0026 28.0 8.2 68 123-190 237-313 (330)
89 COG3169 Uncharacterized protei 41.4 1.5E+02 0.0033 23.0 6.7 31 158-188 82-112 (116)
90 PRK11715 inner membrane protei 40.4 2.7E+02 0.0059 27.1 10.0 75 168-250 326-402 (436)
91 COG4975 GlcU Putative glucose 37.5 21 0.00045 32.4 1.7 124 55-194 11-139 (288)
92 COG2917 Intracellular septatio 34.5 2.9E+02 0.0064 23.6 8.7 27 167-193 43-70 (180)
93 PF06379 RhaT: L-rhamnose-prot 32.8 2.9E+02 0.0063 26.1 8.5 138 118-256 72-234 (344)
94 PF11628 TCR_zetazeta: T-cell 32.0 1.2E+02 0.0027 18.6 3.9 26 125-166 2-27 (33)
95 PF06123 CreD: Inner membrane 31.7 4.9E+02 0.011 25.3 11.1 84 158-249 309-395 (430)
96 PRK09584 tppB putative tripept 30.7 4.2E+02 0.0091 25.7 9.8 46 143-188 316-364 (500)
97 PF03845 Spore_permease: Spore 29.2 2.1E+02 0.0046 25.9 7.1 67 170-239 1-68 (320)
98 PF05653 Mg_trans_NIPA: Magnes 29.2 1.6E+02 0.0035 26.9 6.3 32 200-231 3-34 (300)
99 PF10856 DUF2678: Protein of u 26.5 77 0.0017 25.2 3.1 10 16-25 11-20 (118)
100 PF04279 IspA: Intracellular s 24.9 4.2E+02 0.0091 22.3 12.8 30 163-192 39-69 (176)
101 COG4711 Predicted membrane pro 22.8 2.8E+02 0.006 24.4 6.0 75 164-240 114-196 (217)
102 PRK02237 hypothetical protein; 22.1 1.5E+02 0.0034 23.2 4.0 47 147-193 61-107 (109)
103 PF05915 DUF872: Eukaryotic pr 21.8 4E+02 0.0087 20.9 8.1 17 76-92 73-89 (115)
104 PRK11901 hypothetical protein; 20.5 1.3E+02 0.0028 28.2 3.8 27 5-33 3-29 (327)
No 1
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.3e-46 Score=342.88 Aligned_cols=217 Identities=32% Similarity=0.519 Sum_probs=194.9
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhh--cCC--CCCCcccccchhhhh
Q 024649 46 RKSVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNH--EGV--TDDNRLSTTLDEVIV 121 (265)
Q Consensus 46 ~~~~~l~lL~l~~s~~~ll~~~s~~~g~~~y~~st~v~l~E~lKl~is~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~ 121 (265)
.++++++.+++|+++.++++||++.+++++|.++|+|+++|++|+++|..+++++.+. ++. ..+......|+|..+
T Consensus 15 ~k~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk 94 (345)
T KOG2234|consen 15 MKYLSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLK 94 (345)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHH
Confidence 8999999999999999999999999779999999999999999999999999877432 111 112223356789999
Q ss_pred hhhhHHHHHHHHHHHHHHHHcCChhHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcccccccC---CC---
Q 024649 122 YPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNS---NS--- 195 (265)
Q Consensus 122 ~~iPa~ly~~~n~L~~~al~~l~~~t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l~~~~~---~~--- 195 (265)
.+|||++|++|||++|++++|+||+|||+++|+||++||+|++++|+||++++||.+++++++|++++|++. .+
T Consensus 95 ~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~~~a~~ 174 (345)
T KOG2234|consen 95 VSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSLSPTGAKS 174 (345)
T ss_pred HHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999432 22
Q ss_pred CccccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHHHhcChhhhh
Q 024649 196 DRVLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVM 263 (265)
Q Consensus 196 ~~~~~~~~~G~~~vl~a~~ls~~a~V~~E~~lK~~~~~~~~~~n~~L~~~g~~~~~~~~~~~d~~~v~ 263 (265)
+.+.++++.|+.+++.+|++||+||||+||++|+++. ++|+||+|||++|++++++.++..|++++.
T Consensus 175 ~~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s~~-s~wi~NiqL~~~g~~f~~l~~~~~d~~~i~ 241 (345)
T KOG2234|consen 175 ESSAQNPFLGLVAVLVACFLSGFAGVYFEKILKGSNV-SLWIRNIQLYFFGILFNLLTILLQDGEAIN 241 (345)
T ss_pred CCcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence 2235789999999999999999999999999999996 999999999999999999999999999874
No 2
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=100.00 E-value=1.1e-34 Score=258.15 Aligned_cols=152 Identities=34% Similarity=0.632 Sum_probs=138.9
Q ss_pred ccccchhhhhhhhhHHHHHHHHHHHHHHHHcCChhHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcccccc
Q 024649 112 LSTTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQL 191 (265)
Q Consensus 112 ~~~~~~~~~~~~iPa~ly~~~n~L~~~al~~l~~~t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l~~~ 191 (265)
....+|+.+++++||++|++||+|.|++++++||++||+++|+||++||+|++++||||++++||.|++++++|++++|.
T Consensus 10 ~~~~~~~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~ 89 (244)
T PF04142_consen 10 VWKSPKDTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQL 89 (244)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeec
Confidence 34577899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCC------c------cccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHHHhcCh
Q 024649 192 NSNSD------R------VLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDF 259 (265)
Q Consensus 192 ~~~~~------~------~~~~~~~G~~~vl~a~~ls~~a~V~~E~~lK~~~~~~~~~~n~~L~~~g~~~~~~~~~~~d~ 259 (265)
++..+ + ...++..|++++++++++||+++||+||++|+++. |+|+||+|||++|++++++.....|+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~-s~~~~N~qL~~~gi~~~~~~~~~~~~ 168 (244)
T PF04142_consen 90 SSSQSSDNSSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNV-SLWIQNMQLYLFGILFNLLALLLSDG 168 (244)
T ss_pred CCccccccccccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccch-hHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 76432 0 12457899999999999999999999999999884 99999999999999999999888888
Q ss_pred hhhhc
Q 024649 260 DAVMN 264 (265)
Q Consensus 260 ~~v~~ 264 (265)
+++.+
T Consensus 169 ~~~~~ 173 (244)
T PF04142_consen 169 SAISE 173 (244)
T ss_pred ccccc
Confidence 87654
No 3
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=99.84 E-value=2.1e-19 Score=159.72 Aligned_cols=204 Identities=20% Similarity=0.260 Sum_probs=155.8
Q ss_pred HHHHHHHHHHhhhHHHHHHHhhc---C----CCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC-CCc-ccc--cc
Q 024649 48 SVVTLALTVLTSSQAILIVWSKR---A----GKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTD-DNR-LST--TL 116 (265)
Q Consensus 48 ~~~l~lL~l~~s~~~ll~~~s~~---~----g~~~y~~st~v~l~E~lKl~is~~~~~~~~~~~~~~~-~~~-~~~--~~ 116 (265)
.++-+.++...+.++++.||+.+ + -++|+.++..+|+.|++.+.+-.++-.+ ...+|... -.. ... ++
T Consensus 5 v~ls~imvvsGs~Ntl~aKwadsi~~eg~pgfqhpvlqal~mFlGEflCl~vf~lir~~-sn~~g~~s~~~~ilsq~~~p 83 (372)
T KOG3912|consen 5 VFLSLIMVVSGSFNTLVAKWADSIQAEGSPGFQHPVLQALLMFLGEFLCLAVFKLIRLR-SNGQGVSSDLDSILSQDSSP 83 (372)
T ss_pred hhhhhhhhhhccHHHHHHHHHHhhhhhCCCccccHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCCcccccccccccccCC
Confidence 34445677778899999999975 2 2589999999999999855442222211 11122111 001 111 12
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHcCChhHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcccccccCC--
Q 024649 117 DEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSN-- 194 (265)
Q Consensus 117 ~~~~~~~iPa~ly~~~n~L~~~al~~l~~~t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l~~~~~~-- 194 (265)
-+...+..||+++.....++|+|+.+..++.||++++.-|+||++|+..+|||+++..||+++....+|+++++..+.
T Consensus 84 f~p~lfl~Pal~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~d~~~ 163 (372)
T KOG3912|consen 84 FNPVLFLPPALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSLDVHL 163 (372)
T ss_pred CCcceecChHHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeeeeccc
Confidence 223455669999999999999999999999999999999999999999999999999999999999999999986532
Q ss_pred -CC--ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHH-HHHHHHH
Q 024649 195 -SD--RVLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFG-MAFNAVA 253 (265)
Q Consensus 195 -~~--~~~~~~~~G~~~vl~a~~ls~~a~V~~E~~lK~~~~~~~~~~n~~L~~~g-~~~~~~~ 253 (265)
++ +..++.+.|.++++++.++-|.+-|++||.+|+++. ....--.|-+.|| +++.+++
T Consensus 164 ~~~p~~d~s~iitGdllIiiaqiivaiQ~v~Eek~l~~~nV-~pl~avg~eGlfG~v~~slL~ 225 (372)
T KOG3912|consen 164 VTDPYTDYSSIITGDLLIIIAQIIVAIQMVCEEKQLKKSNV-APLQAVGWEGLFGLVILSLLA 225 (372)
T ss_pred ccCCccccccchhhhHHHHHHHHHHHHHHHHHHhhhhhccC-CHHHHhhhhhhHHHHHHHHHH
Confidence 11 123567899999999999999999999999999985 6666777888888 4444444
No 4
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=99.73 E-value=7.3e-16 Score=142.78 Aligned_cols=145 Identities=19% Similarity=0.224 Sum_probs=128.7
Q ss_pred chhhhhhhhhHHHHHHHHHHHHHHHHcCChhHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcccccccCC-
Q 024649 116 LDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSN- 194 (265)
Q Consensus 116 ~~~~~~~~iPa~ly~~~n~L~~~al~~l~~~t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l~~~~~~- 194 (265)
++.+++|.+.|+++...|.+...|++|.+.+..|++.++.|+++.++++++||+|+++.||.|+++.+.|+.++...+.
T Consensus 76 ~~~~w~y~lla~~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~ 155 (334)
T PF06027_consen 76 KRPWWKYFLLALLDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVL 155 (334)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeeccc
Confidence 4667899999999999999999999999999999999999999999999999999999999999999999988766542
Q ss_pred -CC--ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHHHhcChhhhh
Q 024649 195 -SD--RVLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVM 263 (265)
Q Consensus 195 -~~--~~~~~~~~G~~~vl~a~~ls~~a~V~~E~~lK~~~~~~~~~~n~~L~~~g~~~~~~~~~~~d~~~v~ 263 (265)
++ ....+++.|-+++++++++.|+++|++|+..|+. +......++++||.+++.+.....|++++.
T Consensus 156 ~~~~~~~~~~~i~GDll~l~~a~lya~~nV~~E~~v~~~---~~~~~lg~~Glfg~ii~~iq~~ile~~~i~ 224 (334)
T PF06027_consen 156 SGSDSSSGSNPILGDLLALLGAILYAVSNVLEEKLVKKA---PRVEFLGMLGLFGFIISGIQLAILERSGIE 224 (334)
T ss_pred ccccCCCCCccchhHHHHHHHHHHHHHHHHHHHHhcccC---CHHHHHHHHHHHHHHHHHHHHHheehhhhh
Confidence 11 2346789999999999999999999999999974 456777899999999998887777777654
No 5
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=99.68 E-value=3.6e-16 Score=136.71 Aligned_cols=140 Identities=26% Similarity=0.354 Sum_probs=124.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHcCChhHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcccccccCCCC--cc
Q 024649 121 VYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSD--RV 198 (265)
Q Consensus 121 ~~~iPa~ly~~~n~L~~~al~~l~~~t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l~~~~~~~~--~~ 198 (265)
++++|+..|+.+|++.++++.+.++..+++. |.|++.|+++...+++++++..||.++..+..|+..++.++..+ ..
T Consensus 1 ~isvPa~~~~~s~~l~~v~l~~~~~~~~~~~-~~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~~~~~~~ 79 (222)
T TIGR00803 1 KLSVPIHIIFKQNNLVLIALGNLLAAGKQVT-QLKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQSSAKTLM 79 (222)
T ss_pred CccccchHHHHhcchHHHHHhcccccceeee-hHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCCCccccc
Confidence 3689999999999999999999999999999 99999999999999999999999999999999999998775432 12
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHHHhcChhhh
Q 024649 199 LQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAV 262 (265)
Q Consensus 199 ~~~~~~G~~~vl~a~~ls~~a~V~~E~~lK~~~~~~~~~~n~~L~~~g~~~~~~~~~~~d~~~v 262 (265)
.++...|..+++.++++++++++|+|+.+|+++. ++|.||+++++++.+.+..+....|++.+
T Consensus 80 ~g~~~~g~~~~l~a~~~~~~~~~y~e~~~k~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 142 (222)
T TIGR00803 80 FGNPVVGLSAVLSALLSSGFAGVYFEKILKDGDT-MFWSRNLQLPLFGLFSTFSVLLWSDGTLI 142 (222)
T ss_pred cccHHHHHHHHHHHHHHHhhhHHHHHHcccCCCC-chHHHHHHHHHHHHHHHHHHHhhcccchh
Confidence 2467889999999999999999999999888765 89999999999999988776666665544
No 6
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=99.59 E-value=4.7e-13 Score=122.44 Aligned_cols=189 Identities=20% Similarity=0.259 Sum_probs=141.2
Q ss_pred HhhhHHHHHHH-hhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhhhHHHHHHHHHH
Q 024649 57 LTSSQAILIVW-SKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLYLVKNLL 135 (265)
Q Consensus 57 ~~s~~~ll~~~-s~~~g~~~y~~st~v~l~E~lKl~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iPa~ly~~~n~L 135 (265)
..+...++... .+.+... -.+....++..+.-.+++....... +.+ .........|+++++++.+.+.+
T Consensus 11 ~~~~~g~~qE~i~~~~~~~-~~~~~lt~~q~~~~~~~~~~~~~~~-~~~--------~~~~~~~~~~~~~~~~~~~~~~~ 80 (303)
T PF08449_consen 11 GCCSYGILQEKIMTTPYGS-PFPLFLTFVQFAFNALFSFILLSLF-KFP--------KSRKIPLKKYAILSFLFFLASVL 80 (303)
T ss_pred HHHHHHHHHHHHHcCCCCC-cccHHHHHHHHHHHHHHHHHHHHhc-ccc--------CCCcChHHHHHHHHHHHHHHHHH
Confidence 33445555543 2322221 2346666666666555555443321 100 01122356899999999999999
Q ss_pred HHHHHHcCChhHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcccccccCCCCccc-----cchhhHHHHHH
Q 024649 136 QYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVL-----QTPLQGWIMAI 210 (265)
Q Consensus 136 ~~~al~~l~~~t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l~~~~~~~~~~~-----~~~~~G~~~vl 210 (265)
.+.+++|+|.+++++++++|+++|++++++++|||++++||.++++.++|+++..+++..++.. .....|+++++
T Consensus 81 ~~~al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~~~~~~~~~~~G~~ll~ 160 (303)
T PF08449_consen 81 SNAALKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSSSNSSSFSSALGIILLL 160 (303)
T ss_pred HHHHHHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccccccccccccccchhHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999988765432111 12234999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHHHh
Q 024649 211 VMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVI 256 (265)
Q Consensus 211 ~a~~ls~~a~V~~E~~lK~~~~~~~~~~n~~L~~~g~~~~~~~~~~ 256 (265)
++.++.|+.++++|+++++++. +.|..-....+++.++.++....
T Consensus 161 ~sl~~~a~~~~~qe~~~~~~~~-~~~~~mfy~n~~~~~~~~~~~~~ 205 (303)
T PF08449_consen 161 LSLLLDAFTGVYQEKLFKKYGK-SPWELMFYTNLFSLPFLLILLFL 205 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999886 77888888889998888776544
No 7
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=99.45 E-value=6.3e-11 Score=110.78 Aligned_cols=186 Identities=13% Similarity=0.109 Sum_probs=128.5
Q ss_pred HHhhhHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccch-hhhhhhhhHHHHHHHHH
Q 024649 56 VLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLD-EVIVYPIPAVLYLVKNL 134 (265)
Q Consensus 56 l~~s~~~ll~~~s~~~g~~~y~~st~v~l~E~lKl~is~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~iPa~ly~~~n~ 134 (265)
..+....+..|+--++ .+| |.+...+.-+...+++.++.. .+.. ..+++ ..++ +.......|+++...+.
T Consensus 59 ~~s~~~~~~nK~vl~~--~~~-P~~l~~~~~~~~~l~~~~~~~--~~~~---~~~~~-~~~~~~~~~llp~gl~~~~~~~ 129 (350)
T PTZ00343 59 ALNVLYVVDNKLALNM--LPL-PWTISSLQLFVGWLFALLYWA--TGFR---KIPRI-KSLKLFLKNFLPQGLCHLFVHF 129 (350)
T ss_pred HHHHHHHHHHHHHHHh--CCh-hHHHHHHHHHHHHHHHHHHHH--hCCC---CCCCC-CCHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666655443 232 666777776666444433321 1111 11222 1122 44567777788887778
Q ss_pred HHHHHHHcCChhHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcccccccCCCCccccchhhHHHHHHHHHH
Q 024649 135 LQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQGWIMAIVMAL 214 (265)
Q Consensus 135 L~~~al~~l~~~t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l~~~~~~~~~~~~~~~~G~~~vl~a~~ 214 (265)
..++++++.+++.+|++..+.|++|++++++++|||+++++|.++++.++|+.+...++. +....|+++.+++++
T Consensus 130 ~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~~~~-----~~~~~G~~~~l~s~~ 204 (350)
T PTZ00343 130 GAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASVKEL-----HFTWLAFWCAMLSNL 204 (350)
T ss_pred HHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheecccc-----hhHHHHHHHHHHHHH
Confidence 888999999999999999999999999999999999999999999999999998754321 234679999999999
Q ss_pred HHHHHHHHHHHHhhcCCCC--ChHHHHHHH--HHHHHHHHHHHHH
Q 024649 215 LSGFAGVYTEAIMKKRPSR--NINVQNFWL--YVFGMAFNAVAIV 255 (265)
Q Consensus 215 ls~~a~V~~E~~lK~~~~~--~~~~~n~~L--~~~g~~~~~~~~~ 255 (265)
++++.+++.|+.+++.+.. +....|.+. ...|.++.+....
T Consensus 205 ~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~ 249 (350)
T PTZ00343 205 GSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVL 249 (350)
T ss_pred HHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999865411 222334443 4455555544433
No 8
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=99.42 E-value=7.2e-11 Score=107.58 Aligned_cols=183 Identities=11% Similarity=0.146 Sum_probs=126.3
Q ss_pred HHHhhhHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhhhHHHHHHHHH
Q 024649 55 TVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLYLVKNL 134 (265)
Q Consensus 55 ~l~~s~~~ll~~~s~~~g~~~y~~st~v~l~E~lKl~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iPa~ly~~~n~ 134 (265)
-..+.+..++.|+.-++-.+ |.+..+.......+++.++ ++. +. ..+...++++.......+++.++++.
T Consensus 11 ~~~~~~~~~~NK~~l~~~~~---P~~~~~~~~~~~~~~~~~~----~~~-~~--~~~~~~~~~~~~~~~~~g~~~~~~~~ 80 (302)
T TIGR00817 11 YFLNVYFNIYNKKLLNVFPY---PYFKTLISLAVGSLYCLLS----WSS-GL--PKRLKISSALLKLLLPVAIVHTIGHV 80 (302)
T ss_pred HHHHHHHHHHHHHHHhhCCh---hHHHHHHHHHHHHHHHHHH----HHh-CC--CCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 34455566666766554222 4445555544433222222 111 11 11112345666677778888889999
Q ss_pred HHHHHHHcCChhHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcccccccCCCCccccchhhHHHHHHHHHH
Q 024649 135 LQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQGWIMAIVMAL 214 (265)
Q Consensus 135 L~~~al~~l~~~t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l~~~~~~~~~~~~~~~~G~~~vl~a~~ 214 (265)
+.+++++|.+++.++++..+.+++|++++++++|||+++.+|.++++.++|+.+....+ .+....|.++++++++
T Consensus 81 ~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~~-----~~~~~~G~~~~l~a~~ 155 (302)
T TIGR00817 81 TSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALASDTE-----LSFNWAGFLSAMISNI 155 (302)
T ss_pred HHHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhcCCc-----ccccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998753221 1234579999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHH
Q 024649 215 LSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVA 253 (265)
Q Consensus 215 ls~~a~V~~E~~lK~~~~~~~~~~n~~L~~~g~~~~~~~ 253 (265)
++++..++.|+..++++. +.+..+.+...+|.++.+..
T Consensus 156 ~~a~~~v~~k~~~~~~~~-~~~~~~~~~~~~~~~~l~p~ 193 (302)
T TIGR00817 156 TFVSRNIFSKKAMTIKSL-DKTNLYAYISIMSLFLLSPP 193 (302)
T ss_pred HHHHHHHHHHHhhccCCC-CcccHHHHHHHHHHHHHHHH
Confidence 999999999999873222 33344444455555444444
No 9
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.39 E-value=9e-11 Score=110.18 Aligned_cols=177 Identities=15% Similarity=0.067 Sum_probs=123.4
Q ss_pred HHHHHHHHHHhhhHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhhhHH
Q 024649 48 SVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAV 127 (265)
Q Consensus 48 ~~~l~lL~l~~s~~~ll~~~s~~~g~~~y~~st~v~l~E~lKl~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iPa~ 127 (265)
+..++++=+.+....++.|..-++|-.++. ..+.+-.+-.++.+.+.+.. ++. +......++++..+++.++
T Consensus 15 ~~~~~~~q~~~~~~~~~~k~a~~~G~~~~~---~~~~R~~iA~l~Ll~~~~~~-~~~----~~~~~~~~~~~~~l~l~g~ 86 (358)
T PLN00411 15 LTAMLATETSVVGISTLFKVATSKGLNIYP---FLGYSYLLASLLLLPSLFFT-NRS----RSLPPLSVSILSKIGLLGF 86 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCccH---HHHHHHHHHHHHHHHHHHHH-HHh----cccCcchHHHHHHHHHHHH
Confidence 444444445556666677766665544443 44555444322222222211 111 0111224667778888888
Q ss_pred HHHHHHHHHHHHHHcCChhHHHHHhhhHHHHHHHHHHHH------hcCCCCHHHHHHHHHHHhhcccccccCCC------
Q 024649 128 LYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRII------LKKKLSEIQWAAFILLCCGCTTAQLNSNS------ 195 (265)
Q Consensus 128 ly~~~n~L~~~al~~l~~~t~qvl~q~kii~TAl~s~~~------L~~~ls~~qw~al~ll~~Gv~l~~~~~~~------ 195 (265)
+.++.+.+.|++++|++++...++.++.+++|+++++++ +|||+++.||+|+++.++|+.++-.....
T Consensus 87 ~g~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~ 166 (358)
T PLN00411 87 LGSMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVAS 166 (358)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCccccccc
Confidence 777788899999999999999999999999999999999 69999999999999999999876532110
Q ss_pred -------------C-ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 024649 196 -------------D-RVLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPS 232 (265)
Q Consensus 196 -------------~-~~~~~~~~G~~~vl~a~~ls~~a~V~~E~~lK~~~~ 232 (265)
. ....+...|..+++++++++++..++.++..++.+.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~ 217 (358)
T PLN00411 167 SPPYLNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYPA 217 (358)
T ss_pred ccccccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 0 011233669999999999999999999999887654
No 10
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.28 E-value=8.9e-10 Score=97.52 Aligned_cols=133 Identities=13% Similarity=0.126 Sum_probs=104.5
Q ss_pred hhhhhhhhH-HHHHHHHHHHHHHHHcCChhHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcccccccCCCC
Q 024649 118 EVIVYPIPA-VLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSD 196 (265)
Q Consensus 118 ~~~~~~iPa-~ly~~~n~L~~~al~~l~~~t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l~~~~~~~~ 196 (265)
+...+.+.+ +...+.+.+.|++++++|++...++.++.+++|++++.+++|||++++||.++++.++|+.++..++.
T Consensus 45 ~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~~-- 122 (260)
T TIGR00950 45 RLLRLLLLGALQIGVFYVLYFVAVKRLPVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDGN-- 122 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccCCc--
Confidence 334455555 46679999999999999999999999999999999999999999999999999999999988754331
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHHH
Q 024649 197 RVLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIV 255 (265)
Q Consensus 197 ~~~~~~~~G~~~vl~a~~ls~~a~V~~E~~lK~~~~~~~~~~n~~L~~~g~~~~~~~~~ 255 (265)
.+....|..+.++++++++...++.++..++.+. +....+.+....+.++......
T Consensus 123 --~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~ 178 (260)
T TIGR00950 123 --LSINPAGLLLGLGSGISFALGTVLYKRLVKKEGP-ELLQFTGWVLLLGALLLLPFAW 178 (260)
T ss_pred --ccccHHHHHHHHHHHHHHHHHHHHHhHHhhcCCc-hHHHHHHHHHHHHHHHHHHHHH
Confidence 1245689999999999999999999999776553 3333443445555555444433
No 11
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.24 E-value=4.1e-09 Score=95.84 Aligned_cols=181 Identities=13% Similarity=0.074 Sum_probs=128.9
Q ss_pred HHHHHHHHHHhhhHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhhhHH
Q 024649 48 SVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAV 127 (265)
Q Consensus 48 ~~~l~lL~l~~s~~~ll~~~s~~~g~~~y~~st~v~l~E~lKl~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iPa~ 127 (265)
.+.+++.++.|++..+.+|...++ .+|...++++-..-.++-+.+... ++. + ...+++.....+-++
T Consensus 10 ~~~~~~~~~iWg~~~~~~K~~~~~----~~p~~~~~~R~~~a~l~ll~~~~~--~~~------~-~~~~~~~~~~~~~g~ 76 (292)
T PRK11272 10 FGALFALYIIWGSTYLVIRIGVES----WPPLMMAGVRFLIAGILLLAFLLL--RGH------P-LPTLRQWLNAALIGL 76 (292)
T ss_pred HHHHHHHHHHHhhHHHHHHHHhcc----CCHHHHHHHHHHHHHHHHHHHHHH--hCC------C-CCcHHHHHHHHHHHH
Confidence 455677889999999999987653 347777887777754332222221 111 1 112344445555665
Q ss_pred H-HHHHHHHHHHHH-HcCChhHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcccccccCCCCccccchhhH
Q 024649 128 L-YLVKNLLQYYIF-AYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQG 205 (265)
Q Consensus 128 l-y~~~n~L~~~al-~~l~~~t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l~~~~~~~~~~~~~~~~G 205 (265)
+ ..+.+.+.+++. ++.+++...++..+.++++++++.+ +|||++++||.++++.++|+.++..++.. +....|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~~~~----~~~~~G 151 (292)
T PRK11272 77 LLLAVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSGGNL----SGNPWG 151 (292)
T ss_pred HHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcCccc----ccchHH
Confidence 4 457888999999 9999999999999999999999985 79999999999999999999887543221 234579
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHH
Q 024649 206 WIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAF 249 (265)
Q Consensus 206 ~~~vl~a~~ls~~a~V~~E~~lK~~~~~~~~~~n~~L~~~g~~~ 249 (265)
.++.+++++++++.+++.++.-++ + +......++.+.+.+.
T Consensus 152 ~l~~l~a~~~~a~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~ 192 (292)
T PRK11272 152 AILILIASASWAFGSVWSSRLPLP-V--GMMAGAAEMLAAGVVL 192 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCC-c--chHHHHHHHHHHHHHH
Confidence 999999999999999999887432 2 3444444444444433
No 12
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.21 E-value=2.8e-09 Score=97.21 Aligned_cols=186 Identities=16% Similarity=0.170 Sum_probs=126.9
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhhh
Q 024649 46 RKSVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIP 125 (265)
Q Consensus 46 ~~~~~l~lL~l~~s~~~ll~~~s~~~g~~~y~~st~v~l~E~lKl~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iP 125 (265)
+..+..++-.+.++...+.+|+.. ++.+...++.+-..-.++-+.+...+ ++.. ...+...++++.......
T Consensus 8 ~g~~~~l~a~~~wg~~~~~~k~~~-----~~~~~~~~~~R~~~a~~~l~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~ 79 (296)
T PRK15430 8 QGVLLALAAYFIWGIAPAYFKLIY-----YVPADEILTHRVIWSFFFMVVLMSIC-RQWS--YLKTLIQTPQKIFMLAVS 79 (296)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhc-----CCCHHHHHHHHHHHHHHHHHHHHHHH-ccHH--HHHHHHcCHHHHHHHHHH
Confidence 344555566678999999999752 24577777777777543222222211 1100 000001134444445566
Q ss_pred HHHHHHHHHHHHHHHHcCChhHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcccccccCCCCccccchhhH
Q 024649 126 AVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQG 205 (265)
Q Consensus 126 a~ly~~~n~L~~~al~~l~~~t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l~~~~~~~~~~~~~~~~G 205 (265)
++++++++.+.|++++++|++..+++..+.++++++++++++|||++++||.++++.++|+.++-.+. ++ ..
T Consensus 80 ~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~~~-~~----~~--- 151 (296)
T PRK15430 80 AVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWTF-GS----LP--- 151 (296)
T ss_pred HHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHc-CC----cc---
Confidence 78889999999999999999999999999999999999999999999999999999999998874321 11 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHH
Q 024649 206 WIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAF 249 (265)
Q Consensus 206 ~~~vl~a~~ls~~a~V~~E~~lK~~~~~~~~~~n~~L~~~g~~~ 249 (265)
...+++++++++..++.++..++.. .+....+.+...++.++
T Consensus 152 -~~~l~aa~~~a~~~i~~r~~~~~~~-~~~~~~~~~~~~~~~~~ 193 (296)
T PRK15430 152 -IIALGLAFSFAFYGLVRKKIAVEAQ-TGMLIETMWLLPVAAIY 193 (296)
T ss_pred -HHHHHHHHHHHHHHHHHHhcCCCCc-hhHHHHHHHHHHHHHHH
Confidence 3567788999999999888643222 23455555555555443
No 13
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.19 E-value=2.9e-09 Score=94.70 Aligned_cols=165 Identities=15% Similarity=0.101 Sum_probs=117.5
Q ss_pred HHHHHHHHHHhhhHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccc-ccchh-hhhhhhh
Q 024649 48 SVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLS-TTLDE-VIVYPIP 125 (265)
Q Consensus 48 ~~~l~lL~l~~s~~~ll~~~s~~~g~~~y~~st~v~l~E~lKl~is~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~iP 125 (265)
.+...+-.+.++...+..|+. .+ .++...++.+-+.-.++-+.+.....++.. ...+.. ..+++ .....+.
T Consensus 4 ~~~~i~a~~~wg~~~~~~k~~-~~----~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 76 (256)
T TIGR00688 4 IIVSLLASFLFGYMYYYSKLL-KP----LPATDILGHRMIWSFPFMLLSVTLFRQWAA--LIERLKRIQKRPLILSLLLC 76 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-cc----CCHHHHHHHHHHHHHHHHHHHHHHHcchHH--HHHHHhCcccchHHHHHHHH
Confidence 344556667899999999973 21 568888999988753321211111111000 000111 11222 3457778
Q ss_pred HHHHHHHHHHHHHHHHcCChhHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcccccccCCCCccccchhhH
Q 024649 126 AVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQG 205 (265)
Q Consensus 126 a~ly~~~n~L~~~al~~l~~~t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l~~~~~~~~~~~~~~~~G 205 (265)
+++..+.+.+.+++++++++++..++.++.++++++++++++|||++++||.++++.++|++++..+ .++ ..
T Consensus 77 g~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~-~~~----~~--- 148 (256)
T TIGR00688 77 GLLIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIVL-KGS----LP--- 148 (256)
T ss_pred HHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-cCC----ch---
Confidence 8889999999999999999999999999999999999999999999999999999999999877432 111 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 024649 206 WIMAIVMALLSGFAGVYTEAIMK 228 (265)
Q Consensus 206 ~~~vl~a~~ls~~a~V~~E~~lK 228 (265)
.+.+++++++++..++.++.-+
T Consensus 149 -~~~l~aa~~~a~~~i~~~~~~~ 170 (256)
T TIGR00688 149 -WEALVLAFSFTAYGLIRKALKN 170 (256)
T ss_pred -HHHHHHHHHHHHHHHHHhhcCC
Confidence 3467889999999999888643
No 14
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.18 E-value=1.5e-08 Score=92.38 Aligned_cols=163 Identities=13% Similarity=0.122 Sum_probs=115.6
Q ss_pred HHHHHHHHHHhhhHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhhhHH
Q 024649 48 SVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAV 127 (265)
Q Consensus 48 ~~~l~lL~l~~s~~~ll~~~s~~~g~~~y~~st~v~l~E~lKl~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iPa~ 127 (265)
.+..++..+.|+++.+.+|..-++ ..|...++++-.+-.++ +..+. ++. +. .++.... -++
T Consensus 6 ~l~~l~~~~~Wg~~~~~~k~~~~~----~~p~~~~~~R~~~a~~~-l~~~~---~~~------~~--~~~~~~~---~g~ 66 (299)
T PRK11453 6 GVLALLVVVVWGLNFVVIKVGLHN----MPPLMLAGLRFMLVAFP-AIFFV---ARP------KV--PLNLLLG---YGL 66 (299)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhc----CCHHHHHHHHHHHHHHH-HHHHh---cCC------CC--chHHHHH---HHH
Confidence 344566788999999999976542 45777777776653221 11111 111 10 1121111 122
Q ss_pred -HHHHHHHHHHHHHHc-CChhHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcccccccCCCCccccchhhH
Q 024649 128 -LYLVKNLLQYYIFAY-VDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQG 205 (265)
Q Consensus 128 -ly~~~n~L~~~al~~-l~~~t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l~~~~~~~~~~~~~~~~G 205 (265)
....+..+.|.++++ ++++...++.++.+++|.+++++++|||++++||.++++.++|+.++-.+..++ ......|
T Consensus 67 ~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~~~~~--~~~~~~G 144 (299)
T PRK11453 67 TISFGQFAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIEDSLNG--QHVAMLG 144 (299)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccccCCC--cchhHHH
Confidence 334566677888887 789999999999999999999999999999999999999999998775332111 1224579
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCC
Q 024649 206 WIMAIVMALLSGFAGVYTEAIMKKRP 231 (265)
Q Consensus 206 ~~~vl~a~~ls~~a~V~~E~~lK~~~ 231 (265)
..+.+++++++++..++.++..++.+
T Consensus 145 ~~l~l~aal~~a~~~v~~~~~~~~~~ 170 (299)
T PRK11453 145 FMLTLAAAFSWACGNIFNKKIMSHST 170 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 99999999999999999999866544
No 15
>PRK11689 aromatic amino acid exporter; Provisional
Probab=98.97 E-value=1.3e-07 Score=86.15 Aligned_cols=168 Identities=12% Similarity=0.031 Sum_probs=115.4
Q ss_pred HHHHHHHHHHhhhHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhhhHH
Q 024649 48 SVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAV 127 (265)
Q Consensus 48 ~~~l~lL~l~~s~~~ll~~~s~~~g~~~y~~st~v~l~E~lKl~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iPa~ 127 (265)
++..++-++.|+++-+.+|..-++ +.|....+++-.+-.++ +..+. ++ ++....++ .....-++
T Consensus 6 ~l~~l~a~~~Wg~~~~~~k~~~~~----~~P~~~~~~R~~~a~l~-l~~~~---~~------~~~~~~~~--~~~~~~~l 69 (295)
T PRK11689 6 TLIGLIAILLWSTMVGLIRGVSES----LGPVGGAAMIYSVSGLL-LLLTV---GF------PRLRQFPK--RYLLAGGL 69 (295)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcc----CChHHHHHHHHHHHHHH-HHHHc---cc------cccccccH--HHHHHHhH
Confidence 455667778899999999987653 44666677665443221 11111 11 11111111 11222344
Q ss_pred HHHHHHHHHHHHHH----cCChhHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcccccccCCCCc------
Q 024649 128 LYLVKNLLQYYIFA----YVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDR------ 197 (265)
Q Consensus 128 ly~~~n~L~~~al~----~l~~~t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l~~~~~~~~~------ 197 (265)
.+++++.+.|.++. +++++...++..+.++++++++++++|||++++||.++++.++|+.++-.++.+.+
T Consensus 70 ~~~~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~ 149 (295)
T PRK11689 70 LFVSYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGGDNGLSLAELIN 149 (295)
T ss_pred HHHHHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecCCccchhhhhhh
Confidence 56677777887775 46888889999999999999999999999999999999999999988754322110
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 024649 198 VLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRP 231 (265)
Q Consensus 198 ~~~~~~~G~~~vl~a~~ls~~a~V~~E~~lK~~~ 231 (265)
.......|..+++++++++++..++.++..++.+
T Consensus 150 ~~~~~~~G~~~~l~aa~~~A~~~v~~k~~~~~~~ 183 (295)
T PRK11689 150 NIASNPLSYGLAFIGAFIWAAYCNVTRKYARGKN 183 (295)
T ss_pred ccccChHHHHHHHHHHHHHHHHHHHHhhccCCCC
Confidence 1112356999999999999999999999865543
No 16
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=98.88 E-value=1.5e-06 Score=77.09 Aligned_cols=170 Identities=16% Similarity=0.140 Sum_probs=116.3
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhhh
Q 024649 46 RKSVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIP 125 (265)
Q Consensus 46 ~~~~~l~lL~l~~s~~~ll~~~s~~~g~~~y~~st~v~l~E~lKl~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iP 125 (265)
...+..++..+.++......+....+ ...+....+..-.....+ ..... . ++.. .+.....+..+.....
T Consensus 7 ~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~~~~-~-~~~~----~~~~~~~~~~~~~~~~ 76 (292)
T COG0697 7 LGLLALLLWGLLWGLSFIALKLAVES---LDPFLFAAALRFLIAALL-LLPLL-L-LEPR----GLRPALRPWLLLLLLA 76 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc---cCChHHHHHHHHHHHHHH-HHHHH-H-hhcc----cccccccchHHHHHHH
Confidence 34444455556777777777655543 122233333344443333 11111 1 1100 0111111122345556
Q ss_pred HHHHHHHHHHHHHHHHcCChhHHHHHhhhHHHHHHHHHH-HHhcCCCCHHHHHHHHHHHhhcccccccCCCCccccchhh
Q 024649 126 AVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYR-IILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQ 204 (265)
Q Consensus 126 a~ly~~~n~L~~~al~~l~~~t~qvl~q~kii~TAl~s~-~~L~~~ls~~qw~al~ll~~Gv~l~~~~~~~~~~~~~~~~ 204 (265)
.+.+...+.+.|.++++++++...++..+.+++++++++ +++|||+++.+|.++++.+.|+.++...+..... . ...
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~~-~-~~~ 154 (292)
T COG0697 77 LLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGGGI-L-SLL 154 (292)
T ss_pred HHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcchh-H-HHH
Confidence 678889999999999999999999999999999999997 6679999999999999999999998765443211 1 578
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 024649 205 GWIMAIVMALLSGFAGVYTEAIM 227 (265)
Q Consensus 205 G~~~vl~a~~ls~~a~V~~E~~l 227 (265)
|..+.++++++.+++.++.+++.
T Consensus 155 g~~~~l~a~~~~a~~~~~~~~~~ 177 (292)
T COG0697 155 GLLLALAAALLWALYTALVKRLS 177 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999987
No 17
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.76 E-value=7.3e-07 Score=81.44 Aligned_cols=171 Identities=18% Similarity=0.242 Sum_probs=126.4
Q ss_pred HHHHHHHHHHhhhHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhhhHH
Q 024649 48 SVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAV 127 (265)
Q Consensus 48 ~~~l~lL~l~~s~~~ll~~~s~~~g~~~y~~st~v~l~E~lKl~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iPa~ 127 (265)
..+.+..++.....++.-|+--+ .|+|+....+.+.+.+-.++.+.++ |+.+..+.+ ..+++...++..+++
T Consensus 14 l~sa~~Y~~sS~lm~vvNK~vls--~y~f~~~l~l~~~Q~l~s~~~v~~l----k~~~lv~~~--~l~~~~~kk~~P~~~ 85 (314)
T KOG1444|consen 14 LLSALFYCLSSILMTVVNKIVLS--SYNFPMGLLLMLLQSLASVLVVLVL----KRLGLVNFR--PLDLRTAKKWFPVSL 85 (314)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHHHHHHHH----HHhceeecC--CcChHHHHHHccHHH
Confidence 44445555555555666665544 4667766555555555433333333 333322222 235677788899999
Q ss_pred HHHHHHHHHHHHHHcCChhHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcccccccCCCCccccchhhHHH
Q 024649 128 LYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQGWI 207 (265)
Q Consensus 128 ly~~~n~L~~~al~~l~~~t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l~~~~~~~~~~~~~~~~G~~ 207 (265)
+|...-.---.+++|++.++|-++.+..|+.||+.-+.++|++.+..-|.++++..+|.......+.+. ...|+.
T Consensus 86 lf~~~i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~~d~sf-----~~~gY~ 160 (314)
T KOG1444|consen 86 LFVGMLFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAFTDLSF-----NLRGYS 160 (314)
T ss_pred HHHHHHHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhcccccee-----cchhHH
Confidence 998888888888999999999999999999999999999999999999999999999987665544322 234999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCC
Q 024649 208 MAIVMALLSGFAGVYTEAIMKKRP 231 (265)
Q Consensus 208 ~vl~a~~ls~~a~V~~E~~lK~~~ 231 (265)
.++..+++.+.-.+|.|+.++..+
T Consensus 161 w~~~n~~~~a~~~v~~kk~vd~~~ 184 (314)
T KOG1444|consen 161 WALANCLTTAAFVVYVKKSVDSAN 184 (314)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccc
Confidence 999999999999999999988765
No 18
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=98.74 E-value=2.2e-06 Score=77.44 Aligned_cols=104 Identities=17% Similarity=0.169 Sum_probs=86.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHcCChhHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcccccccCCCCcccc
Q 024649 121 VYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQ 200 (265)
Q Consensus 121 ~~~iPa~ly~~~n~L~~~al~~l~~~t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l~~~~~~~~~~~~ 200 (265)
....-++.....+.+.+.++++.|++...++..+.++++++++++++|||+++.||.|+.+.+.|+.++..++.. .
T Consensus 65 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~~~~----~ 140 (281)
T TIGR03340 65 LLAISAVANMVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLSRFA----Q 140 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccccc----c
Confidence 344445678899999999999999999999999999999999999999999999999999999999887543221 1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 024649 201 TPLQGWIMAIVMALLSGFAGVYTEAIMK 228 (265)
Q Consensus 201 ~~~~G~~~vl~a~~ls~~a~V~~E~~lK 228 (265)
....|..+.+++++++++..++.++..+
T Consensus 141 ~~~~g~~~~l~aal~~a~~~i~~k~~~~ 168 (281)
T TIGR03340 141 HRRKAYAWALAAALGTAIYSLSDKAAAL 168 (281)
T ss_pred cchhHHHHHHHHHHHHHHhhhhcccccc
Confidence 2235777889999999999998776643
No 19
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=98.72 E-value=3.7e-07 Score=82.90 Aligned_cols=182 Identities=16% Similarity=0.199 Sum_probs=136.2
Q ss_pred cchhhHHHHHHHHHHHHhhhHHHHHHHhhcC--CCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchh
Q 024649 41 LANWKRKSVVTLALTVLTSSQAILIVWSKRA--GKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDE 118 (265)
Q Consensus 41 ~~~~~~~~~~l~lL~l~~s~~~ll~~~s~~~--g~~~y~~st~v~l~E~lKl~is~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (265)
.+.....-+..+++++.|-.-+|..+|++++ .+++| |-.++-+-..+|+.++...... .++.. .+.|...+|++
T Consensus 7 ~~~~~~~rV~~L~lVl~yY~~Si~Ltf~~~~~~~~f~f-PLf~ts~h~~v~flfa~~~~~l--~~~~~-~r~r~~~sw~~ 82 (349)
T KOG1443|consen 7 DNQFLMNRVLTLALVLLYYFLSIGLTFYFKWLTKNFHF-PLFVTSLHLAVKFLFAALSRRL--YQCSV-PRARVVLSWRD 82 (349)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCcCC-chHHHHHHHHHHHHHHHHHHHH--HhccC-CccccCCcHHH
Confidence 3344445555666778888888888988763 33332 3445556667777776654321 12111 12345568888
Q ss_pred hh-hhhhhHHHHHHHHHHHHHHHHcCChhHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcccccccCCCCc
Q 024649 119 VI-VYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDR 197 (265)
Q Consensus 119 ~~-~~~iPa~ly~~~n~L~~~al~~l~~~t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l~~~~~~~~~ 197 (265)
.+ +.+..|+.-+.+=.|.++++.|++.+.|-++.++.|+|.-+|+.++-=||+++.=..-..+..+|+.+....+..
T Consensus 83 ~Lr~~aPtalata~DIGLSN~sl~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~KsTq-- 160 (349)
T KOG1443|consen 83 YLRRLAPTALATALDIGLSNWSLEYVTLSLYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKSTQ-- 160 (349)
T ss_pred HHHHhhhhhhhhhcccccccceeeeeeeeeeeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEecccc--
Confidence 76 455556777789999999999999999999999999999999988766888888888888888999888776542
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 024649 198 VLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRP 231 (265)
Q Consensus 198 ~~~~~~~G~~~vl~a~~ls~~a~V~~E~~lK~~~ 231 (265)
=.+.|++++.++++++|+--.+.++++++++
T Consensus 161 ---f~i~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~ 191 (349)
T KOG1443|consen 161 ---FNIEGFFLVLAASLLSGLRWAFTQMLLRNQP 191 (349)
T ss_pred ---eeehhHHHHHHHHHhhhhhHHHHHHHHhcCc
Confidence 3467999999999999999999999999876
No 20
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=98.67 E-value=9.1e-06 Score=73.97 Aligned_cols=164 Identities=12% Similarity=-0.022 Sum_probs=109.5
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhhh
Q 024649 46 RKSVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIP 125 (265)
Q Consensus 46 ~~~~~l~lL~l~~s~~~ll~~~s~~~g~~~y~~st~v~l~E~lKl~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iP 125 (265)
+..+.+++-++.++.....+|+.-.+ +.+...++.+-++-.++.+.+. +. ++ . ...+++......-
T Consensus 12 ~~~~~~~la~~~~~~~~~~~K~~~~~----~~~~~~~~~R~~~a~l~l~~~~-~~-~~------~--~~~~~~~~~~~~~ 77 (293)
T PRK10532 12 LPILLLLIAMASIQSGASLAKSLFPL----VGAPGVTALRLALGTLILIAIF-KP-WR------L--RFAKEQRLPLLFY 77 (293)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHH----cCHHHHHHHHHHHHHHHHHHHH-hH-Hh------c--cCCHHHHHHHHHH
Confidence 34455555566667777788876542 4466677777766533322222 11 11 1 1123444455566
Q ss_pred HHHHHHHHHHHHHHHHcCChhHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcccccccCCCCccccchhhH
Q 024649 126 AVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQG 205 (265)
Q Consensus 126 a~ly~~~n~L~~~al~~l~~~t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l~~~~~~~~~~~~~~~~G 205 (265)
++++.+.+.+.|++++|+|++...++..+.++++++++. |+.++.+| +.+.++|+.++-....+. ......|
T Consensus 78 g~~~~~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~~----~~~~~~~~--~~i~~~Gv~li~~~~~~~--~~~~~~G 149 (293)
T PRK10532 78 GVSLGGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFSS----RRPVDFVW--VVLAVLGLWFLLPLGQDV--SHVDLTG 149 (293)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhc----CChHHHHH--HHHHHHHHheeeecCCCc--ccCChHH
Confidence 677888899999999999999999999999999998873 55555555 556688887754222111 1234579
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCC
Q 024649 206 WIMAIVMALLSGFAGVYTEAIMKKRP 231 (265)
Q Consensus 206 ~~~vl~a~~ls~~a~V~~E~~lK~~~ 231 (265)
.++.+++++++++..++.++..++.+
T Consensus 150 ~ll~l~aa~~~a~~~v~~r~~~~~~~ 175 (293)
T PRK10532 150 AALALGAGACWAIYILSGQRAGAEHG 175 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 99999999999999999999866543
No 21
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=98.60 E-value=5.4e-07 Score=70.03 Aligned_cols=121 Identities=17% Similarity=0.131 Sum_probs=88.6
Q ss_pred hhhHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhhhHHH-HHHHHHHH
Q 024649 58 TSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVL-YLVKNLLQ 136 (265)
Q Consensus 58 ~s~~~ll~~~s~~~g~~~y~~st~v~l~E~lKl~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iPa~l-y~~~n~L~ 136 (265)
++...++.|...++ +++...++...+.-.+ .+.+.... ++. +....++++.....+.+++ ..+.+.+.
T Consensus 3 ~a~~~~~~k~~~~~----~~~~~~~~~~~~~~~~-~~~~~~~~-~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (126)
T PF00892_consen 3 WAIYSVFSKKLLKK----ISPLSITFWRFLIAGI-LLILLLIL-GRK-----PFKNLSPRQWLWLLFLGLLGTALAYLLY 71 (126)
T ss_pred eeeHHHHHHHHhcc----CCHHHHHHHHHHHHHH-HHHHHHhh-ccc-----cccCCChhhhhhhhHhhccceehHHHHH
Confidence 44555666655443 4466667777776543 22222211 111 1123345566667777776 58999999
Q ss_pred HHHHHcCChhHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcccc
Q 024649 137 YYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTA 189 (265)
Q Consensus 137 ~~al~~l~~~t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l~ 189 (265)
+.++++.+++..+++.++.++++.+++++++||++++.||.|+++.+.|+.++
T Consensus 72 ~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~ 124 (126)
T PF00892_consen 72 FYALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLI 124 (126)
T ss_pred HHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998764
No 22
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=98.56 E-value=3.1e-05 Score=70.46 Aligned_cols=171 Identities=18% Similarity=0.274 Sum_probs=138.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhhhHHHHHHHHHHHHHHHHcCChhHHHHHhhhHH
Q 024649 77 SVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNI 156 (265)
Q Consensus 77 ~~st~v~l~E~lKl~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iPa~ly~~~n~L~~~al~~l~~~t~qvl~q~ki 156 (265)
++.-.+++.-+..++.+..++.. ++.+ ....+-++.|...++.-.+..-+.|-++.|++=+|.-+...+|.
T Consensus 50 ~~~fL~~~q~l~~~~~s~~~l~~-~k~~--------~~~~apl~~y~~is~tn~~s~~~~yeaLKyvSyPtq~LaKscKm 120 (327)
T KOG1581|consen 50 HSLFLVFCQRLVALLVSYAMLKW-WKKE--------LSGVAPLYKYSLISFTNTLSSWCGYEALKYVSYPTQTLAKSCKM 120 (327)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhc-cccc--------CCCCCchhHHhHHHHHhhcchHHHHHHHHhccchHHHHHHHhhh
Confidence 34556677777766666554431 1111 11223467899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHhhcccccccCCCCc----cccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 024649 157 ISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDR----VLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPS 232 (265)
Q Consensus 157 i~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l~~~~~~~~~----~~~~~~~G~~~vl~a~~ls~~a~V~~E~~lK~~~~ 232 (265)
+-+.+...++-|+|++..+.+..++...|+.+..+.+.+++ ...+...|+.++...-+.=|+.+....+++|+.+.
T Consensus 121 IPVmlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~s~~~~g~~ns~~G~~Ll~~~L~fDgfTn~tQd~lf~~~k~ 200 (327)
T KOG1581|consen 121 IPVMLMGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSDSSSKSGRENSPIGILLLFGYLLFDGFTNATQDSLFKKYKV 200 (327)
T ss_pred hHHHHHHHHHhcCccCcHHHHHHHHHHhheeeEEEecCCCCccccCCCCchHhHHHHHHHHHHHhhHHhHHHHHhccCCc
Confidence 99999999999999999999999999999998876654332 22578899999999999999999999999997775
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHhc
Q 024649 233 RNINVQNFWLYVFGMAFNAVAIVIQ 257 (265)
Q Consensus 233 ~~~~~~n~~L~~~g~~~~~~~~~~~ 257 (265)
+.|.+..-+-+|+.+.|+...+.+
T Consensus 201 -s~~~mM~~vNLf~~i~~~~~li~q 224 (327)
T KOG1581|consen 201 -SSLHMMFGVNLFSAILNGTYLILQ 224 (327)
T ss_pred -cHhHHHHHHHHHHHHHHHHhhhcC
Confidence 888888888999999998886543
No 23
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=98.49 E-value=9.1e-07 Score=69.46 Aligned_cols=71 Identities=24% Similarity=0.345 Sum_probs=63.0
Q ss_pred hhhHHHH-HHHHHHHHHHHHcCChhHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcccccccCC
Q 024649 123 PIPAVLY-LVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSN 194 (265)
Q Consensus 123 ~iPa~ly-~~~n~L~~~al~~l~~~t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l~~~~~~ 194 (265)
..-+++. ..++.+.++++++.| +...++.++.++++++++++++|||+++.+|.++++.++|++++..++.
T Consensus 38 ~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~~ 109 (113)
T PF13536_consen 38 ILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSDL 109 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhhc
Confidence 3335544 589999999999999 5888999999999999999999999999999999999999999987654
No 24
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=98.47 E-value=1.6e-08 Score=89.71 Aligned_cols=133 Identities=19% Similarity=0.242 Sum_probs=117.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHcCChhHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcccccccCC--CCc-
Q 024649 121 VYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSN--SDR- 197 (265)
Q Consensus 121 ~~~iPa~ly~~~n~L~~~al~~l~~~t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l~~~~~~--~~~- 197 (265)
.|.+-|+.+.-.|.+.--|.||.+-...+++-...++..-+++|++||.|..+.|..|.+++..|++++-..+. +|+
T Consensus 80 hYilla~~DVEaNy~vV~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV~agd~a 159 (336)
T KOG2766|consen 80 HYILLAFVDVEANYFVVKAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDVHAGDRA 159 (336)
T ss_pred HhhheeEEeecccEEEeeehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEeeecccccc
Confidence 48888999999999999999999999999999999999999999999999999999999999999988765542 332
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHHHh
Q 024649 198 VLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVI 256 (265)
Q Consensus 198 ~~~~~~~G~~~vl~a~~ls~~a~V~~E~~lK~~~~~~~~~~n~~L~~~g~~~~~~~~~~ 256 (265)
...++..|-+++++++.+.|.+++-+|.+.|+- +..+...++++||.++.++-...
T Consensus 160 ggsnp~~GD~lvi~GATlYaVSNv~EEflvkn~---d~~elm~~lgLfGaIIsaIQ~i~ 215 (336)
T KOG2766|consen 160 GGSNPVKGDFLVIAGATLYAVSNVSEEFLVKNA---DRVELMGFLGLFGAIISAIQFIF 215 (336)
T ss_pred CCCCCccCcEEEEecceeeeeccccHHHHHhcC---cHHHHHHHHHHHHHHHHHHHHhh
Confidence 357899999999999999999999999999984 56677789999999999987443
No 25
>COG2510 Predicted membrane protein [Function unknown]
Probab=98.38 E-value=7.3e-06 Score=65.83 Aligned_cols=131 Identities=14% Similarity=0.117 Sum_probs=96.3
Q ss_pred HHHHHHhhhHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhhhHHHHHH
Q 024649 52 LALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLYLV 131 (265)
Q Consensus 52 ~lL~l~~s~~~ll~~~s~~~g~~~y~~st~v~l~E~lKl~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iPa~ly~~ 131 (265)
++-.+.++..|+.-|.--++-+ |..+-+++-+.-++++..+.+..-+.+. .. ..++|.+....+.++.-.+
T Consensus 9 LLsA~fa~L~~iF~KIGl~~vd----p~~At~IRtiVi~~~l~~v~~~~g~~~~---~~--~~~~k~~lflilSGla~gl 79 (140)
T COG2510 9 LLSALFAGLTPIFAKIGLEGVD----PDFATTIRTIVILIFLLIVLLVTGNWQA---GG--EIGPKSWLFLILSGLAGGL 79 (140)
T ss_pred HHHHHHHHHHHHHHHHhccccC----ccHHHHHHHHHHHHHHHHHHHhcCceec---cc--ccCcceehhhhHHHHHHHH
Confidence 3445667778888886544333 5555566666655555555542211111 11 1355666777777788889
Q ss_pred HHHHHHHHHHcCChhHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcccccc
Q 024649 132 KNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQL 191 (265)
Q Consensus 132 ~n~L~~~al~~l~~~t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l~~~ 191 (265)
.-.++|.|++.=+++-..=+..+.+.++++|++++||||+|..||+|+++.++|..++..
T Consensus 80 swl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs~ 139 (140)
T COG2510 80 SWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVSL 139 (140)
T ss_pred HHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEec
Confidence 999999999999988888889999999999999999999999999999999999988753
No 26
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=98.35 E-value=3.6e-06 Score=77.77 Aligned_cols=108 Identities=19% Similarity=0.286 Sum_probs=97.5
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHcCChhHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcccccccCCCCcc
Q 024649 119 VIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRV 198 (265)
Q Consensus 119 ~~~~~iPa~ly~~~n~L~~~al~~l~~~t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l~~~~~~~~~~ 198 (265)
+....-.|+.+++...+.+.++++++.+.+|+...+.|++|.++++++.+|+.++.-|++++....|+++....+.+
T Consensus 83 ~~~llpl~~~~~~~~v~~n~Sl~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~~e~~--- 159 (316)
T KOG1441|consen 83 LRTLLPLGLVFCISHVLGNVSLSYVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASVTELS--- 159 (316)
T ss_pred hHHHHHHHHHHHHHHHhcchhhhccchhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeeecccc---
Confidence 44667778899999999999999999999999999999999999999999999999999999999999988765432
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 024649 199 LQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRP 231 (265)
Q Consensus 199 ~~~~~~G~~~vl~a~~ls~~a~V~~E~~lK~~~ 231 (265)
-...|+....++.+..++..++.|+++++++
T Consensus 160 --fn~~G~i~a~~s~~~~al~~I~~~~ll~~~~ 190 (316)
T KOG1441|consen 160 --FNLFGFISAMISNLAFALRNILSKKLLTSKG 190 (316)
T ss_pred --ccHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 3578999999999999999999999997544
No 27
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=98.34 E-value=2.1e-05 Score=64.05 Aligned_cols=135 Identities=11% Similarity=0.128 Sum_probs=93.8
Q ss_pred HHHHhhhHHHHHHHhhcC---CCccchHHHHHHHHHHHHHHHHHHHH-HHHHhhcCCCCCCccc-----ccchhhhhhhh
Q 024649 54 LTVLTSSQAILIVWSKRA---GKYEYSVTTANFLVETLKCALSLAAL-ARIWNHEGVTDDNRLS-----TTLDEVIVYPI 124 (265)
Q Consensus 54 L~l~~s~~~ll~~~s~~~---g~~~y~~st~v~l~E~lKl~is~~~~-~~~~~~~~~~~~~~~~-----~~~~~~~~~~i 124 (265)
=.+..+...+++|...++ .++..++....+..-..-.++.+... ..+..+.. ....... ..++.......
T Consensus 8 s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 86 (153)
T PF03151_consen 8 SSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLS-SFFSEIFGEELSSDPNFIFLLIL 86 (153)
T ss_pred HHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-hHHHHhhhhhhcchHHHHHHHHH
Confidence 344556666666643322 33456666666666666555544432 22211100 0000000 02244567778
Q ss_pred hHHHHHHHHHHHHHHHHcCChhHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcccc
Q 024649 125 PAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTA 189 (265)
Q Consensus 125 Pa~ly~~~n~L~~~al~~l~~~t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l~ 189 (265)
.+++....|...|..+.+.+|.|++++.+.|.+.+.+++++++++++|..|+.|+++.++|..+-
T Consensus 87 ~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Y 151 (153)
T PF03151_consen 87 SGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLY 151 (153)
T ss_pred HHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHhee
Confidence 88899999999999999999999999999999999999999999999999999999999998754
No 28
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=98.25 E-value=2.2e-05 Score=73.23 Aligned_cols=121 Identities=19% Similarity=0.236 Sum_probs=101.4
Q ss_pred hhhHHHHHHHHHHHHHHHHcCChhHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcccccccCC---CCccc
Q 024649 123 PIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSN---SDRVL 199 (265)
Q Consensus 123 ~iPa~ly~~~n~L~~~al~~l~~~t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l~~~~~~---~~~~~ 199 (265)
..-+.+.++.|...+.++.+...+...+++.+.=+||-.++.++.++|+|..+.+++++.+.|++++..+++ ++.+.
T Consensus 163 l~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~~~~~~a 242 (416)
T KOG2765|consen 163 LFFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQNSDLPA 242 (416)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccccccCCc
Confidence 344568889999999999999999999999999999999999999999999999999999999999987754 22334
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHhhcCC-CCChHHHHHHHHHHH
Q 024649 200 QTPLQGWIMAIVMALLSGFAGVYTEAIMKKRP-SRNINVQNFWLYVFG 246 (265)
Q Consensus 200 ~~~~~G~~~vl~a~~ls~~a~V~~E~~lK~~~-~~~~~~~n~~L~~~g 246 (265)
.+++.|-++.++++++.|+..+..++-..+++ .+++- ++.++.|
T Consensus 243 ~~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~---lffGfvG 287 (416)
T KOG2765|consen 243 SRPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQ---LFFGFVG 287 (416)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHH---HHHHHHH
Confidence 67899999999999999999999888777664 34443 3444444
No 29
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=98.20 E-value=0.00036 Score=63.65 Aligned_cols=105 Identities=11% Similarity=0.140 Sum_probs=88.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHcCChhHHHHHhh-hHHHHHHHHHHHHhcCCCCHHH----HHHHHHHHhhcccccccCCCC
Q 024649 122 YPIPAVLYLVKNLLQYYIFAYVDAPGYQILKN-LNIISTGVLYRIILKKKLSEIQ----WAAFILLCCGCTTAQLNSNSD 196 (265)
Q Consensus 122 ~~iPa~ly~~~n~L~~~al~~l~~~t~qvl~q-~kii~TAl~s~~~L~~~ls~~q----w~al~ll~~Gv~l~~~~~~~~ 196 (265)
-.+.+++..+.|..++.+.+++..++...+.+ ..+++..+++.+++||+.++.+ +.|+++.++|+.++...+.++
T Consensus 62 g~l~G~~w~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~~~~ 141 (290)
T TIGR00776 62 GLLSGAFWALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSKDKS 141 (290)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEeccccc
Confidence 44455679999999999999999999988888 8999999999999999999999 999999999998886554221
Q ss_pred cc-c--cchhhHHHHHHHHHHHHHHHHHHHHHH
Q 024649 197 RV-L--QTPLQGWIMAIVMALLSGFAGVYTEAI 226 (265)
Q Consensus 197 ~~-~--~~~~~G~~~vl~a~~ls~~a~V~~E~~ 226 (265)
.. . .+...|++..+++++..++..+..+..
T Consensus 142 ~~~~~~~~~~~Gi~~~l~sg~~y~~~~~~~~~~ 174 (290)
T TIGR00776 142 AGIKSEFNFKKGILLLLMSTIGYLVYVVVAKAF 174 (290)
T ss_pred cccccccchhhHHHHHHHHHHHHHHHHHHHHHc
Confidence 11 0 233569999999999999999999875
No 30
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.11 E-value=2.1e-05 Score=61.96 Aligned_cols=69 Identities=10% Similarity=0.091 Sum_probs=62.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHcCChhHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhccccc
Q 024649 122 YPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQ 190 (265)
Q Consensus 122 ~~iPa~ly~~~n~L~~~al~~l~~~t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l~~ 190 (265)
+.+--++|.+...+...+++.+|.+....+.++.++.+++++++++|||+++.||.++.+.++|++++.
T Consensus 40 ~~~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 40 LGLALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 333336789999999999999999988888889999999999999999999999999999999998764
No 31
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=98.03 E-value=0.00044 Score=60.98 Aligned_cols=132 Identities=14% Similarity=-0.039 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhhh
Q 024649 46 RKSVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIP 125 (265)
Q Consensus 46 ~~~~~l~lL~l~~s~~~ll~~~s~~~g~~~y~~st~v~l~E~lKl~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iP 125 (265)
...+..++-.+.++...+..|....+.+ ..+.+.....-..-.++.+.... ..+. .. ..+++++.....-
T Consensus 128 ~G~~~~l~a~~~~a~~~~~~k~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~---~~~~---~~--~~~~~~~~~~~~~ 197 (260)
T TIGR00950 128 AGLLLGLGSGISFALGTVLYKRLVKKEG--PELLQFTGWVLLLGALLLLPFAW---FLGP---NP--QALSLQWGALLYL 197 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHhhcCC--chHHHHHHHHHHHHHHHHHHHHH---hcCC---CC--CcchHHHHHHHHH
Confidence 4455555666778888888886554222 11111111111211111111111 1111 11 1133444445555
Q ss_pred HHH-HHHHHHHHHHHHHcCChhHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcc
Q 024649 126 AVL-YLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCT 187 (265)
Q Consensus 126 a~l-y~~~n~L~~~al~~l~~~t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~ 187 (265)
+++ ..+...+.+.++++.++++.+++..+.++++++++++++||++++.||.|..+.++|+.
T Consensus 198 ~~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~~ 260 (260)
T TIGR00950 198 GLIGTALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAVL 260 (260)
T ss_pred HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC
Confidence 554 56888899999999999999999999999999999999999999999999999998863
No 32
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=98.03 E-value=3.2e-06 Score=76.00 Aligned_cols=113 Identities=22% Similarity=0.365 Sum_probs=98.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHc-CChhHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcccccccCCCCc-
Q 024649 120 IVYPIPAVLYLVKNLLQYYIFAY-VDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDR- 197 (265)
Q Consensus 120 ~~~~iPa~ly~~~n~L~~~al~~-l~~~t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l~~~~~~~~~- 197 (265)
..|++--.++++-|...++++.+ +|-+..-++++..++.|.+++++++|||.|.+|..+.+++++|+.+..+.++.|-
T Consensus 65 k~Y~i~V~mFF~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~ 144 (330)
T KOG1583|consen 65 KDYAITVAMFFIVNVTNNYALKFNIPMPLHIIFRSGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDGR 144 (330)
T ss_pred hhhheehheeeeeeeeccceeeecccceEEEEEecCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEeecCcchh
Confidence 46888888899999999999977 9999999999999999999999999999999999999999999999876543221
Q ss_pred --------c-----ccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 024649 198 --------V-----LQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPS 232 (265)
Q Consensus 198 --------~-----~~~~~~G~~~vl~a~~ls~~a~V~~E~~lK~~~~ 232 (265)
. ...-.+|+.+...+.++|+.-|+|.|...|+++.
T Consensus 145 ~~~~~l~~~~~~~~~~~w~iGi~lL~~al~~sa~mgiyqE~~Y~kyGK 192 (330)
T KOG1583|consen 145 SKLSGLDSGSAQSDFFWWLIGIALLVFALLLSAYMGIYQETTYQKYGK 192 (330)
T ss_pred hhhcccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 0 1123579999999999999999999999999875
No 33
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=97.96 E-value=4.6e-05 Score=67.38 Aligned_cols=135 Identities=14% Similarity=0.181 Sum_probs=108.6
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHcCChhHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcccccccCC--CC
Q 024649 119 VIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSN--SD 196 (265)
Q Consensus 119 ~~~~~iPa~ly~~~n~L~~~al~~l~~~t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l~~~~~~--~~ 196 (265)
.+.|+..++-|...+.-.+-+++++|=+|-.+-.+.|++-..++.+.+.+|+.+|++..+.++.++|+++.-..+. +.
T Consensus 85 ~~~YaAcs~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~Kv~g 164 (337)
T KOG1580|consen 85 TKMYAACSASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKENKVGG 164 (337)
T ss_pred chHHHHHHHHHHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhccccccCC
Confidence 4689999999999999999999999999999999999999999999999999999999999999999999877643 22
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHH
Q 024649 197 RVLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAI 254 (265)
Q Consensus 197 ~~~~~~~~G~~~vl~a~~ls~~a~V~~E~~lK~~~~~~~~~~n~~L~~~g~~~~~~~~ 254 (265)
....+..+|-++.+++-..-|+.++..|++-+.+.. +-..+...+.+|+.+....++
T Consensus 165 ~e~~t~g~GElLL~lSL~mDGlTg~~Qdrira~yq~-~g~~MM~~~NlwStL~Lg~g~ 221 (337)
T KOG1580|consen 165 AEDKTFGFGELLLILSLAMDGLTGSIQDRIRASYQR-TGTSMMFYTNLWSTLYLGAGL 221 (337)
T ss_pred CcccccchHHHHHHHHHHhcccchhHHHHHHHhhcc-CchhhHHHHHHHHHHHhhhhh
Confidence 233566788899999999999999999999776543 222222233445555444444
No 34
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.82 E-value=0.00016 Score=56.53 Aligned_cols=73 Identities=12% Similarity=0.196 Sum_probs=64.9
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHcCChh-HHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhccccccc
Q 024649 120 IVYPIPAVLYLVKNLLQYYIFAYVDAP-GYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN 192 (265)
Q Consensus 120 ~~~~iPa~ly~~~n~L~~~al~~l~~~-t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l~~~~ 192 (265)
....+..++|.+...+...+++.+|.+ .|.+-....++.|++.+++++||++++.||+++.+.++|++...+.
T Consensus 30 ~~~~~~i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l~ 103 (105)
T PRK11431 30 TPSIITVTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKLS 103 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcc
Confidence 344555779999999999999999977 7788888999999999999999999999999999999999887543
No 35
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.79 E-value=0.00016 Score=56.88 Aligned_cols=72 Identities=17% Similarity=0.196 Sum_probs=64.5
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHcCChh-HHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhccccc
Q 024649 119 VIVYPIPAVLYLVKNLLQYYIFAYVDAP-GYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQ 190 (265)
Q Consensus 119 ~~~~~iPa~ly~~~n~L~~~al~~l~~~-t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l~~ 190 (265)
.....+.-++|.+...+...+++++|.+ .|.+-....++.|++.+++++||++++.||.++.+.+.|++...
T Consensus 35 ~~~~~~~~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~lk 107 (109)
T PRK10650 35 KIYGILSLAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMIK 107 (109)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence 3445666789999999999999999987 78888889999999999999999999999999999999998764
No 36
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=97.77 E-value=0.00027 Score=62.10 Aligned_cols=194 Identities=16% Similarity=0.230 Sum_probs=130.1
Q ss_pred HHHhhhHHHHHHHhhc--CCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhhhHHHHHHH
Q 024649 55 TVLTSSQAILIVWSKR--AGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLYLVK 132 (265)
Q Consensus 55 ~l~~s~~~ll~~~s~~--~g~~~y~~st~v~l~E~lKl~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iPa~ly~~~ 132 (265)
.+.++..+|+|...+. -....|+..-+++..+.+-+.+.++++.+. + .. .-| .++..++..|+++..+-
T Consensus 11 ~lsYc~sSIlmTltNKyVls~~gfnMnflll~vQSlvcvv~l~iLk~l-~---~~-~fR----~t~aK~WfpiSfLLv~M 81 (309)
T COG5070 11 SLSYCFSSILMTLTNKYVLSNLGFNMNFLLLAVQSLVCVVGLLILKFL-R---LV-EFR----LTKAKKWFPISFLLVVM 81 (309)
T ss_pred HHHHHHHHHHHHHhhHheecCCCCchhhHHHHHHHHHHHHHHHHHHHH-h---Hh-hee----hhhhhhhcCHHHHHHHH
Confidence 4456677777776654 233457777777778887777777666432 1 10 011 34455677888777665
Q ss_pred HHHHHHHHHcCChhHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcccccccCCCCcc--ccchhhHHHHHH
Q 024649 133 NLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRV--LQTPLQGWIMAI 210 (265)
Q Consensus 133 n~L~~~al~~l~~~t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l~~~~~~~~~~--~~~~~~G~~~vl 210 (265)
-.-.--+++|++.+.|.++.++.|+..|..-+.++|.|.+.....+..+++..-.+...++..... .+..-.|++.+.
T Consensus 82 Iyt~SKsLqyL~vpiYTiFKNltII~iAygEvl~Fgg~vtsl~l~SFilMvlSS~va~w~D~q~~~~~~~~lN~GY~Wm~ 161 (309)
T COG5070 82 IYTSSKSLQYLAVPIYTIFKNLTIILIAYGEVLFFGGRVTSLELLSFILMVLSSVVATWGDQQASAFKAQILNPGYLWMF 161 (309)
T ss_pred HHhcccceeeeeeeHHHHhccceeehhHhhHHHHhcCccchhhHHHHHHHHHHHHHhccchhhHHHHHhcccCCceEEEe
Confidence 555556789999999999999999999999999999999999999999888777665544432111 123446888888
Q ss_pred HHHHHHHHHHHHHHHHhhcCCC---CChHHHHHHHHHHHHHHHHHH-HHhcChhh
Q 024649 211 VMALLSGFAGVYTEAIMKKRPS---RNINVQNFWLYVFGMAFNAVA-IVIQDFDA 261 (265)
Q Consensus 211 ~a~~ls~~a~V~~E~~lK~~~~---~~~~~~n~~L~~~g~~~~~~~-~~~~d~~~ 261 (265)
.-|+.++.--...++..|-.+. +..+..| +.+.++.+.. ++.+||++
T Consensus 162 ~NclssaafVL~mrkri~ltNf~d~dtmfYnN----llslPiL~~~s~~~edws~ 212 (309)
T COG5070 162 TNCLSSAAFVLIMRKRIKLTNFKDFDTMFYNN----LLSLPILLSFSFLFEDWSP 212 (309)
T ss_pred hhhHhHHHHHHHHHHhhcccccchhhHHHHhh----hHHHHHHHHHHHHhccCCc
Confidence 8888887766666666553321 1233333 4455655554 45678774
No 37
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=97.75 E-value=0.00099 Score=62.40 Aligned_cols=70 Identities=14% Similarity=0.195 Sum_probs=64.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHcCChhHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhccccc
Q 024649 121 VYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQ 190 (265)
Q Consensus 121 ~~~iPa~ly~~~n~L~~~al~~l~~~t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l~~ 190 (265)
.....++.|.++|.+.|+++..++|.++++....|++++.+++++++++++|+.|++|.++.+.|+.+.+
T Consensus 278 ~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs 347 (350)
T PTZ00343 278 KIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYS 347 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHh
Confidence 3444567999999999999999999999999999999999999999999999999999999999997754
No 38
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.75 E-value=0.00022 Score=57.04 Aligned_cols=73 Identities=11% Similarity=0.230 Sum_probs=64.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHcCChh-HHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcccccccC
Q 024649 121 VYPIPAVLYLVKNLLQYYIFAYVDAP-GYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNS 193 (265)
Q Consensus 121 ~~~iPa~ly~~~n~L~~~al~~l~~~-t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l~~~~~ 193 (265)
...+.-++|.+...+...+++++|.+ .|.+.....++.+++.+++++||++++.||+++.+.++|++.+...+
T Consensus 32 ~~~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~ 105 (120)
T PRK10452 32 GFILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGT 105 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCC
Confidence 34566789999999999999999988 55666689999999999999999999999999999999999887654
No 39
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.72 E-value=0.00021 Score=55.81 Aligned_cols=73 Identities=18% Similarity=0.227 Sum_probs=65.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHcCChh-HHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhccccccc
Q 024649 120 IVYPIPAVLYLVKNLLQYYIFAYVDAP-GYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN 192 (265)
Q Consensus 120 ~~~~iPa~ly~~~n~L~~~al~~l~~~-t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l~~~~ 192 (265)
....+-.++|.+...+.-.+++++|.+ .|.+-...-++.|++.+++++||++++.||+++.++++|++...+.
T Consensus 31 ~~~il~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~~ 104 (106)
T COG2076 31 WPSILTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKLG 104 (106)
T ss_pred chHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhhc
Confidence 445666778999999999999999977 7888899999999999999999999999999999999999877543
No 40
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=97.68 E-value=0.0059 Score=55.53 Aligned_cols=123 Identities=20% Similarity=0.256 Sum_probs=87.6
Q ss_pred ccccchhhhhhhhhHHHHHHHHHHHHHHHHcCChhHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcccccc
Q 024649 112 LSTTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQL 191 (265)
Q Consensus 112 ~~~~~~~~~~~~iPa~ly~~~n~L~~~al~~l~~~t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l~~~ 191 (265)
...+||....+.+-+++...|-.++-++..+=..--.++=+-..+++..++.++++|||+|+.||+++++..+|+....+
T Consensus 65 ~~~~p~~~~~~~l~a~li~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~ 144 (293)
T COG2962 65 LLKQPKTLLMLALTALLIGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTW 144 (293)
T ss_pred HHhCcHHHHHHHHHHHHHHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHH
Confidence 45677888899999999999999999998875555556666678999999999999999999999999999999987655
Q ss_pred cCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHH
Q 024649 192 NSNSDRVLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYV 244 (265)
Q Consensus 192 ~~~~~~~~~~~~~G~~~vl~a~~ls~~a~V~~E~~lK~~~~~~~~~~n~~L~~ 244 (265)
...+ -++. .+.-|+..|+.+...+++ |-....++-...+++..
T Consensus 145 ~~g~-----lpwv----al~la~sf~~Ygl~RK~~-~v~a~~g~~lE~l~l~p 187 (293)
T COG2962 145 LLGS-----LPWV----ALALALSFGLYGLLRKKL-KVDALTGLTLETLLLLP 187 (293)
T ss_pred HcCC-----CcHH----HHHHHHHHHHHHHHHHhc-CCchHHhHHHHHHHHhH
Confidence 4322 1222 234455667777654443 43332344444444433
No 41
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.68 E-value=0.0003 Score=55.38 Aligned_cols=74 Identities=19% Similarity=0.246 Sum_probs=64.5
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHcCChh-HHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcccccccC
Q 024649 120 IVYPIPAVLYLVKNLLQYYIFAYVDAP-GYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNS 193 (265)
Q Consensus 120 ~~~~iPa~ly~~~n~L~~~al~~l~~~-t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l~~~~~ 193 (265)
......-++|.+...+...+++.+|.+ .|.+-....++.+++.+++++||++++.||.++.+.++|++.+.+.+
T Consensus 31 ~~~i~~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~~ 105 (110)
T PRK09541 31 WPSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLS 105 (110)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 344455678999999999999999988 56666789999999999999999999999999999999999887643
No 42
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=97.65 E-value=0.00064 Score=61.89 Aligned_cols=70 Identities=10% Similarity=0.078 Sum_probs=62.8
Q ss_pred hhHH-HHHHHHHHHHHHHHcCChhHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcccccccC
Q 024649 124 IPAV-LYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNS 193 (265)
Q Consensus 124 iPa~-ly~~~n~L~~~al~~l~~~t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l~~~~~ 193 (265)
..++ .|...|.+.|.++++++|.++++....++++++++++++++|+++..||+|.++.++|+.+.+...
T Consensus 225 ~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~k 295 (302)
T TIGR00817 225 VAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVK 295 (302)
T ss_pred HHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHHh
Confidence 4444 677778888899999999999999999999999999999999999999999999999998877543
No 43
>PRK11689 aromatic amino acid exporter; Provisional
Probab=97.62 E-value=0.0027 Score=57.83 Aligned_cols=77 Identities=13% Similarity=0.068 Sum_probs=64.9
Q ss_pred chhhhhhhhhHHHHHHHHHHHHHHHHcCChhHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhccccccc
Q 024649 116 LDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN 192 (265)
Q Consensus 116 ~~~~~~~~iPa~ly~~~n~L~~~al~~l~~~t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l~~~~ 192 (265)
+..+.....-++.-.+...+.+++++++|++..+++....++++.++++++++|++++.||.|.++.+.|+.+....
T Consensus 212 ~~~~~~l~~~~~~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~ 288 (295)
T PRK11689 212 LPAIIKLLLAAAAMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLA 288 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhh
Confidence 33343334444455678889999999999999999999999999999999999999999999999999999777543
No 44
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=97.61 E-value=0.00065 Score=58.77 Aligned_cols=109 Identities=16% Similarity=0.170 Sum_probs=93.7
Q ss_pred hhhhhh-HHHHHHHHHHHHHHHHcCChhHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcccccccCCCCcc
Q 024649 120 IVYPIP-AVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRV 198 (265)
Q Consensus 120 ~~~~iP-a~ly~~~n~L~~~al~~l~~~t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l~~~~~~~~~~ 198 (265)
.++.-| +++.+..|+++-.++..++|+..+-+....-.|.=+++++.||.|+...+.++.++.+.|++++...+..
T Consensus 53 ~~~taPF~i~Wt~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN~--- 129 (290)
T KOG4314|consen 53 FIRTAPFSIFWTGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADNE--- 129 (290)
T ss_pred eeeecceEEEEecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccch---
Confidence 333444 3567899999999999999999999999999999999999999999999999999999999998754321
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 024649 199 LQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRP 231 (265)
Q Consensus 199 ~~~~~~G~~~vl~a~~ls~~a~V~~E~~lK~~~ 231 (265)
-.+.+.|+.+.+.+++.+++.-|.++..+.+-+
T Consensus 130 ~a~e~iGi~~AV~SA~~aAlYKV~FK~~iGnAn 162 (290)
T KOG4314|consen 130 HADEIIGIACAVGSAFMAALYKVLFKMFIGNAN 162 (290)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence 246889999999999999999999998887644
No 45
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=97.56 E-value=0.00087 Score=60.48 Aligned_cols=65 Identities=12% Similarity=0.123 Sum_probs=58.8
Q ss_pred hhHHHHHHHHHHHHHHHHcCChhHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhccc
Q 024649 124 IPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTT 188 (265)
Q Consensus 124 iPa~ly~~~n~L~~~al~~l~~~t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l 188 (265)
...+.-.+.+.+.++++++.|++....+.+..++++.+++++++||++++.||.|..+.++|+.+
T Consensus 216 ~~~~~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 216 LGGLMIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV 280 (281)
T ss_pred HHHHHHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence 33345567888999999999999999999999999999999999999999999999999999865
No 46
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=97.54 E-value=0.0051 Score=58.00 Aligned_cols=63 Identities=19% Similarity=0.122 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHcCChhHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcccccccC
Q 024649 131 VKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNS 193 (265)
Q Consensus 131 ~~n~L~~~al~~l~~~t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l~~~~~ 193 (265)
+...+.++++++++|+...+...+.+++++++++++|+|++++.|++|.++.+.|+.+++...
T Consensus 268 lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~~ 330 (358)
T PLN00411 268 VYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWGK 330 (358)
T ss_pred HHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhhh
Confidence 455677889999999999999999999999999999999999999999999999999987643
No 47
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=97.52 E-value=0.0061 Score=55.39 Aligned_cols=64 Identities=17% Similarity=0.200 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhccccccc
Q 024649 129 YLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN 192 (265)
Q Consensus 129 y~~~n~L~~~al~~l~~~t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l~~~~ 192 (265)
-.++..++++++++++++..+++..+.+++++++++++++|++++.||+|.++.++|++.....
T Consensus 219 t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~ 282 (293)
T PRK10532 219 TALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLT 282 (293)
T ss_pred HHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhc
Confidence 3467778999999999999999999999999999999999999999999999999988876543
No 48
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=97.38 E-value=0.003 Score=57.61 Aligned_cols=74 Identities=15% Similarity=0.240 Sum_probs=66.2
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHH-cCChhHHHHHhhhHHHHHHHHHHHHhcCCCCHHHH----HHHHHHHhhcccccc
Q 024649 118 EVIVYPIPAVLYLVKNLLQYYIFA-YVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQW----AAFILLCCGCTTAQL 191 (265)
Q Consensus 118 ~~~~~~iPa~ly~~~n~L~~~al~-~l~~~t~qvl~q~kii~TAl~s~~~L~~~ls~~qw----~al~ll~~Gv~l~~~ 191 (265)
..+...+.+++..++|.+++.+.+ ++++++..++.+..++.+.+++++++||+.++.|+ .|.++...|+.++.+
T Consensus 210 ~~~~~~~~Gi~~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~ 288 (290)
T TIGR00776 210 AILLNILPGLMWGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGI 288 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhc
Confidence 344455578888899999999999 99999999999999999999999999999999999 999999999887654
No 49
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=97.35 E-value=0.0013 Score=53.16 Aligned_cols=67 Identities=12% Similarity=0.022 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHHcCChhHHHHHhhhHHHHHHHHHHH--HhcCCCCHHHHHHHHHHHhhcccccccC
Q 024649 127 VLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRI--ILKKKLSEIQWAAFILLCCGCTTAQLNS 193 (265)
Q Consensus 127 ~ly~~~n~L~~~al~~l~~~t~qvl~q~kii~TAl~s~~--~L~~~ls~~qw~al~ll~~Gv~l~~~~~ 193 (265)
++|.+...+..++++.+|.+...-+.......++++++. ++||++|+.||+|+++.++|+.+++.++
T Consensus 56 ~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~ 124 (129)
T PRK02971 56 AGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPT 124 (129)
T ss_pred HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCC
Confidence 588899999999999999998887777777777777775 8999999999999999999999987543
No 50
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=97.35 E-value=0.015 Score=53.01 Aligned_cols=63 Identities=13% Similarity=0.102 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHcCChhHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhccccccc
Q 024649 130 LVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN 192 (265)
Q Consensus 130 ~~~n~L~~~al~~l~~~t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l~~~~ 192 (265)
.+...+.+.++++++++...++....+++++++++++++|+++..||.|.++.++|+.+...+
T Consensus 226 ~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~ 288 (299)
T PRK11453 226 IVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFG 288 (299)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcc
Confidence 367778888999999999999999999999999999999999999999999999999877554
No 51
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.32 E-value=0.00079 Score=60.82 Aligned_cols=142 Identities=18% Similarity=0.236 Sum_probs=102.8
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHcCChhHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcccccccCCCC
Q 024649 117 DEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSD 196 (265)
Q Consensus 117 ~~~~~~~iPa~ly~~~n~L~~~al~~l~~~t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l~~~~~~~~ 196 (265)
+++.++++-=++....|| +-++|++.+-|++=+++..+||-++++.+||+|=+..-..+..+.+.|.-+ +.+..+.
T Consensus 103 r~vlplsvVfi~mI~fnn---lcL~yVgVaFYyvgRsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~l-GvdqE~~ 178 (347)
T KOG1442|consen 103 RQVLPLSVVFILMISFNN---LCLKYVGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGL-GVDQEGS 178 (347)
T ss_pred Hhhcchhheeeeehhccc---eehhhcceEEEEeccchhhhHHHHhHHhhcccccccccceeehhheehhee-ccccccc
Confidence 444454444333334444 468999999999999999999999999999999887666555444444422 1222111
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHH-HhcChhhhhc
Q 024649 197 RVLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAI-VIQDFDAVMN 264 (265)
Q Consensus 197 ~~~~~~~~G~~~vl~a~~ls~~a~V~~E~~lK~~~~~~~~~~n~~L~~~g~~~~~~~~-~~~d~~~v~~ 264 (265)
...-...|.++-+.+++.-++-++|++|.+-..++ .+|...+...+++.+..+..+ +..|.+++.+
T Consensus 179 -~~~ls~~GvifGVlaSl~vAlnaiytkk~l~~v~~-~iw~lt~ynnv~a~lLflpll~lnge~~~v~~ 245 (347)
T KOG1442|consen 179 -TGTLSWIGVIFGVLASLAVALNAIYTKKVLPPVGD-CIWRLTAYNNVNALLLFLPLLILNGEFQAVVG 245 (347)
T ss_pred -cCccchhhhHHHHHHHHHHHHHHHhhheecccccC-eehhhHHHHHHHHHHHHHHHHHHcchHHHHcC
Confidence 12345789999999999999999999998877776 899999999999987766655 4467777643
No 52
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=97.31 E-value=0.0099 Score=53.95 Aligned_cols=76 Identities=16% Similarity=0.158 Sum_probs=64.1
Q ss_pred hhhhhhhhhHHH-HHHHHHHHHHHHHcCChhHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhccccccc
Q 024649 117 DEVIVYPIPAVL-YLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN 192 (265)
Q Consensus 117 ~~~~~~~iPa~l-y~~~n~L~~~al~~l~~~t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l~~~~ 192 (265)
..+.....-+++ -.+.+.+.++++++++++...++..+.++++++++++++||++++.||.|.++.+.|+.+.+..
T Consensus 210 ~~~~~i~~l~i~~s~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~ 286 (292)
T PRK11272 210 SGFLALGYLAVFGSIIAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLG 286 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 333344444443 4477889999999999999999999999999999999999999999999999999999887654
No 53
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=97.30 E-value=0.0062 Score=55.69 Aligned_cols=143 Identities=16% Similarity=0.139 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHhhhHHHHHHHhh-cCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhhh
Q 024649 47 KSVVTLALTVLTSSQAILIVWSK-RAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIP 125 (265)
Q Consensus 47 ~~~~l~lL~l~~s~~~ll~~~s~-~~g~~~y~~st~v~l~E~lKl~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iP 125 (265)
+.+.+++-.+..+.+...-+... +.+. .+.-.++......+.+.......-...+..+..+-....|.-.....+-
T Consensus 155 G~~ll~~sl~~~a~~~~~qe~~~~~~~~---~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~ 231 (303)
T PF08449_consen 155 GIILLLLSLLLDAFTGVYQEKLFKKYGK---SPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLF 231 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCC---cHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHH
Confidence 55555555555666666665333 2232 3466777788877766555433200111000001111233333444555
Q ss_pred HHHHHHHHHHHHHHHHcCChhHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhccccccc
Q 024649 126 AVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN 192 (265)
Q Consensus 126 a~ly~~~n~L~~~al~~l~~~t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l~~~~ 192 (265)
++.-++.....+.-.+..+|.+..+...++-++|-+++.++.++++++.||.|+++.+.|..+-...
T Consensus 232 s~~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~ 298 (303)
T PF08449_consen 232 SLTGALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYA 298 (303)
T ss_pred HHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHh
Confidence 5555666666677789999999999999999999999999999999999999999999999876544
No 54
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=97.30 E-value=0.01 Score=53.78 Aligned_cols=143 Identities=12% Similarity=0.150 Sum_probs=103.3
Q ss_pred CCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhhhHHHHHHHHHHHHHHHHcCChh-HHHH
Q 024649 72 GKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAP-GYQI 150 (265)
Q Consensus 72 g~~~y~~st~v~l~E~lKl~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iPa~ly~~~n~L~~~al~~l~~~-t~qv 150 (265)
|+.++++...+.+.-++ +++.+... .+ +.+..+.+.++.-.+.+++..+.+..+|.+.+++..+ +.=+
T Consensus 9 gG~~~~Q~lG~t~Gali---~alv~~~~--~~------p~~~~~~~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPi 77 (269)
T PF06800_consen 9 GGKPANQILGTTIGALI---FALVVFLF--RQ------PAFSMSGTSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPI 77 (269)
T ss_pred CCcHHHHHHHHHHHHHH---HHHHHHHH--hC------CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeecc
Confidence 44577776666555444 44444331 11 2232234666777888899999999999999999866 6666
Q ss_pred HhhhHHHHHHHHHHHHhcCCCCHHHHH----HHHHHHhhcccccccCCCCcc---ccchhhHHHHHHHHHHHHHHHHHHH
Q 024649 151 LKNLNIISTGVLYRIILKKKLSEIQWA----AFILLCCGCTTAQLNSNSDRV---LQTPLQGWIMAIVMALLSGFAGVYT 223 (265)
Q Consensus 151 l~q~kii~TAl~s~~~L~~~ls~~qw~----al~ll~~Gv~l~~~~~~~~~~---~~~~~~G~~~vl~a~~ls~~a~V~~ 223 (265)
-...+++.|++..+++++|--+..+|. |++++++|+.+....+.+++. ..+.--|+...+++.+-+.+..+..
T Consensus 78 Stg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~~~~~~~~~~~~~~~~kgi~~Ll~stigy~~Y~~~~ 157 (269)
T PF06800_consen 78 STGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSYQDKKSDKSSSKSNMKKGILALLISTIGYWIYSVIP 157 (269)
T ss_pred chhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhccccccccccccccchhhHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999988888876 888899999998877654331 2345668888888888777777764
Q ss_pred HH
Q 024649 224 EA 225 (265)
Q Consensus 224 E~ 225 (265)
+.
T Consensus 158 ~~ 159 (269)
T PF06800_consen 158 KA 159 (269)
T ss_pred Hh
Confidence 43
No 55
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=97.25 E-value=0.00084 Score=60.51 Aligned_cols=107 Identities=13% Similarity=0.149 Sum_probs=81.0
Q ss_pred hhHHHHHHHHHHHHHHHHcCChhHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcccccccCC-------CC
Q 024649 124 IPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSN-------SD 196 (265)
Q Consensus 124 iPa~ly~~~n~L~~~al~~l~~~t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l~~~~~~-------~~ 196 (265)
+=+++.+....++|++++||+-+-..++.=+.+.+|++|++.+|||++|+..-++..+.+.|++++.-++. ++
T Consensus 102 LRg~mG~tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG~~t~g~ 181 (346)
T KOG4510|consen 102 LRGFMGFTGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPFLFGDTTEGE 181 (346)
T ss_pred eehhhhhhHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCcccCCCcccc
Confidence 34566677888999999999999999999999999999999999999999999999999999998753321 11
Q ss_pred ccc--cchhhHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 024649 197 RVL--QTPLQGWIMAIVMALLSGFAGVYTEAIMKKR 230 (265)
Q Consensus 197 ~~~--~~~~~G~~~vl~a~~ls~~a~V~~E~~lK~~ 230 (265)
++. .....|.+..+.+++..+--.+...++=|+-
T Consensus 182 ~~s~~~~~~~gt~aai~s~lf~asvyIilR~iGk~~ 217 (346)
T KOG4510|consen 182 DSSQVEYDIPGTVAAISSVLFGASVYIILRYIGKNA 217 (346)
T ss_pred ccccccccCCchHHHHHhHhhhhhHHHHHHHhhccc
Confidence 111 2345677776666666555555566654543
No 56
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=97.00 E-value=0.019 Score=52.82 Aligned_cols=66 Identities=20% Similarity=0.308 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHHcCChhHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhccccccc
Q 024649 127 VLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN 192 (265)
Q Consensus 127 ~ly~~~n~L~~~al~~l~~~t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l~~~~ 192 (265)
+++.+.+.+.+.++.+.|++..+=+....++++++++.++||||+++..|.|.++.++|.+++-..
T Consensus 58 ~~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~ 123 (300)
T PF05653_consen 58 LLMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIF 123 (300)
T ss_pred HHHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEe
Confidence 578899999999999999999999999999999999999999999999999999999999876543
No 57
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=96.99 E-value=0.0036 Score=47.61 Aligned_cols=61 Identities=15% Similarity=0.225 Sum_probs=38.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHcCChh-HHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 024649 122 YPIPAVLYLVKNLLQYYIFAYVDAP-GYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILL 182 (265)
Q Consensus 122 ~~iPa~ly~~~n~L~~~al~~l~~~-t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll 182 (265)
....-.+|.+...+...+++++|.+ .|-+.....++.+++.+.+++||++|+.||.++.+.
T Consensus 32 ~~~~~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 32 TILAVVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp --HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 3344458999999999999999988 567777899999999999999999999999998763
No 58
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=96.92 E-value=0.004 Score=49.28 Aligned_cols=70 Identities=19% Similarity=0.285 Sum_probs=62.5
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHcCChhHH-HHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcccc
Q 024649 120 IVYPIPAVLYLVKNLLQYYIFAYVDAPGY-QILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTA 189 (265)
Q Consensus 120 ~~~~iPa~ly~~~n~L~~~al~~l~~~t~-qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l~ 189 (265)
++|.+|=+++.....++|+.+..-|-+.. =+.+.+..++|++..+++.+|..++..|+|+.+.++|+.+.
T Consensus 42 ~~y~ipf~lNq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 42 PKYIIPFLLNQSGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC 112 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence 57899999999999999999999998744 45568999999999988888888999999999999999764
No 59
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=96.80 E-value=0.0039 Score=55.77 Aligned_cols=59 Identities=19% Similarity=0.219 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHcCChhHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcccc
Q 024649 131 VKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTA 189 (265)
Q Consensus 131 ~~n~L~~~al~~l~~~t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l~ 189 (265)
+-..|..++++.+|+.+|.++.+..+.+.|+..+++|+|++|..||++++..+++.+=.
T Consensus 222 lPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~ 280 (292)
T COG5006 222 LPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGS 280 (292)
T ss_pred cchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcc
Confidence 55678889999999999999999999999999999999999999999999887766533
No 60
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=96.70 E-value=0.0071 Score=54.78 Aligned_cols=182 Identities=19% Similarity=0.111 Sum_probs=130.2
Q ss_pred cccchhhHHHHHHHHHHHHhhhHHHHHHHhhc-CCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccch
Q 024649 39 SELANWKRKSVVTLALTVLTSSQAILIVWSKR-AGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLD 117 (265)
Q Consensus 39 ~~~~~~~~~~~~l~lL~l~~s~~~ll~~~s~~-~g~~~y~~st~v~l~E~lKl~is~~~~~~~~~~~~~~~~~~~~~~~~ 117 (265)
.+.++|+.-.+......+.+-....+-.+-.+ .|-+||-.. ..+.+++-- +.+ -+.+ ..... ..+.+..
T Consensus 36 s~kpkw~QFlic~~g~Ff~Yl~yGy~qElif~~~gfkp~GWy--lTlvQf~~Y--sg~-glie--~~~~~-~k~r~iP-- 105 (367)
T KOG1582|consen 36 SDKPKWTQFLICSAGVFFLYLVYGYLQELIFNVEGFKPFGWY--LTLVQFLVY--SGF-GLIE--LQLIQ-TKRRVIP-- 105 (367)
T ss_pred ccCchhhhHHHHHhHHHHHHHHHHHHHHHHhccccCcccchH--HHHHHHHHH--Hhh-hheE--EEeec-ccceecc--
Confidence 45678888777778888888888888776554 343334321 112222210 111 1100 11111 1111222
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHcCChhHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcccccccCCCCc
Q 024649 118 EVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDR 197 (265)
Q Consensus 118 ~~~~~~iPa~ly~~~n~L~~~al~~l~~~t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l~~~~~~~~~ 197 (265)
+.-|.+.|.+-.....|..-++.|++=++--++..+|++-.-+-+.++=|+|..+....+-.++.+|+++..+.++..+
T Consensus 106 -~rtY~~la~~t~gtmGLsn~SlgYLNYPtQviFKccKliPVmiggifIqGkRY~v~d~~aA~lm~lGli~FTLADs~~s 184 (367)
T KOG1582|consen 106 -WRTYVILAFLTVGTMGLSNGSLGYLNYPTQVIFKCCKLIPVMIGGIFIQGKRYGVHDYIAAMLMSLGLIWFTLADSQTS 184 (367)
T ss_pred -hhHhhhhHhhhhhccccCcCccccccCcHHHHHHhhhhhhhhheeeeeccccccHHHHHHHHHHHHHHHhhhhcccccC
Confidence 2468888888889999999999999999999999999999999999999999999999999999999999988765432
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 024649 198 VLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPS 232 (265)
Q Consensus 198 ~~~~~~~G~~~vl~a~~ls~~a~V~~E~~lK~~~~ 232 (265)
+ +-...|+.++-.|-+.=++-|=..||.+|..+.
T Consensus 185 P-NF~~~Gv~mIsgALl~DA~iGNvQEk~m~~~~~ 218 (367)
T KOG1582|consen 185 P-NFNLIGVMMISGALLADAVIGNVQEKAMKMNPA 218 (367)
T ss_pred C-CcceeeHHHHHHHHHHHHHhhHHHHHHHhhCCC
Confidence 2 234679988888888889999999999998875
No 61
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=96.63 E-value=0.0095 Score=54.22 Aligned_cols=65 Identities=8% Similarity=-0.025 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHcCChhHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhccccccc
Q 024649 128 LYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN 192 (265)
Q Consensus 128 ly~~~n~L~~~al~~l~~~t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l~~~~ 192 (265)
.-.+...+.+.+++++||+..+.+....++++.++++++++|++++.||.|..+..+|+.++..+
T Consensus 222 ~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~~ 286 (296)
T PRK15430 222 VTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMD 286 (296)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 34477889999999999999999999999999999999999999999999999998888776543
No 62
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=96.33 E-value=0.094 Score=47.60 Aligned_cols=119 Identities=12% Similarity=0.034 Sum_probs=83.5
Q ss_pred hhHHHHHHHHHHHHhhhHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhh
Q 024649 44 WKRKSVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYP 123 (265)
Q Consensus 44 ~~~~~~~l~lL~l~~s~~~ll~~~s~~~g~~~y~~st~v~l~E~lKl~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (265)
.++..+.+++-.+.+...+.+.++...++ ..+++-|.+=++++.+++....++ ....|..++=.
T Consensus 136 ~~kgi~~Ll~stigy~~Y~~~~~~~~~~~-------~~~~lPqaiGm~i~a~i~~~~~~~---------~~~~k~~~~ni 199 (269)
T PF06800_consen 136 MKKGILALLISTIGYWIYSVIPKAFHVSG-------WSAFLPQAIGMLIGAFIFNLFSKK---------PFFEKKSWKNI 199 (269)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhcCCCh-------hHhHHHHHHHHHHHHHHHhhcccc---------cccccchHHhh
Confidence 34555555555667777777777754432 234445555555554444311011 01123455668
Q ss_pred hhHHHHHHHHHHHHHHHHcCChhHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHH
Q 024649 124 IPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAA 178 (265)
Q Consensus 124 iPa~ly~~~n~L~~~al~~l~~~t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~a 178 (265)
++++++.+.|..++++.+.+-.++--.+.|+.++...+-..++|||+=+++++..
T Consensus 200 l~G~~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~ 254 (269)
T PF06800_consen 200 LTGLIWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIY 254 (269)
T ss_pred HHHHHHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHH
Confidence 8999999999999999999999999999999999999999999998888887753
No 63
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=96.26 E-value=0.01 Score=54.99 Aligned_cols=72 Identities=14% Similarity=0.228 Sum_probs=65.0
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHcCChhHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhccccc
Q 024649 119 VIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQ 190 (265)
Q Consensus 119 ~~~~~iPa~ly~~~n~L~~~al~~l~~~t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l~~ 190 (265)
...+..-++++...|...|..+...+|-||||..+.|-++.-+.+++++++++|+.|.+|..+.++|+.+-.
T Consensus 235 ~~~~~~~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~ 306 (316)
T KOG1441|consen 235 FLILLLNSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYS 306 (316)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHH
Confidence 444555559999999999999999999999999999999999999999999999999999999999998753
No 64
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=96.20 E-value=0.32 Score=42.70 Aligned_cols=78 Identities=22% Similarity=0.220 Sum_probs=66.8
Q ss_pred cchhhhhhhhhHHHHH-HHHHHHHHHHHcCChhHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhccccccc
Q 024649 115 TLDEVIVYPIPAVLYL-VKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN 192 (265)
Q Consensus 115 ~~~~~~~~~iPa~ly~-~~n~L~~~al~~l~~~t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l~~~~ 192 (265)
.++........+++-. +...+.+.+++..+++....+....++++.++.+++++|+.+..||.|..+.+.|+.+....
T Consensus 210 ~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~ 288 (292)
T COG0697 210 LSRAWLLLLYLGVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR 288 (292)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 3445556666666555 68899999999999999999999999999999999999999999999999999999887654
No 65
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=95.99 E-value=0.012 Score=51.19 Aligned_cols=67 Identities=18% Similarity=0.135 Sum_probs=60.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHcCChhHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhccc
Q 024649 122 YPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTT 188 (265)
Q Consensus 122 ~~iPa~ly~~~n~L~~~al~~l~~~t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l 188 (265)
...+.++.+++..+..+.+++.|+.+..+....+++++++++.++++++++..||.|..+.+.|+.+
T Consensus 155 ~~~~~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l 221 (222)
T TIGR00803 155 VWIVGLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL 221 (222)
T ss_pred HHHHHHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence 4455567788888999999999999999999999999999999999999999999999999888753
No 66
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.48 E-value=0.093 Score=48.54 Aligned_cols=66 Identities=23% Similarity=0.355 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHHHcCChhHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhccccccc
Q 024649 127 VLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN 192 (265)
Q Consensus 127 ~ly~~~n~L~~~al~~l~~~t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l~~~~ 192 (265)
+.+.+.+...|.++.+-|++...=+..+.++++|+++..+||||++..-.+|.++.++|..++-.+
T Consensus 72 ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~h 137 (335)
T KOG2922|consen 72 LTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIH 137 (335)
T ss_pred HHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEe
Confidence 567889999999999999999999999999999999999999999999999999999998876554
No 67
>PRK13499 rhamnose-proton symporter; Provisional
Probab=94.29 E-value=4.8 Score=37.90 Aligned_cols=139 Identities=12% Similarity=0.042 Sum_probs=97.2
Q ss_pred cchhhhhhhhhHHHHHHHHHHHHHHHHcCChh-HHHHHhhhHHHHHHHHHHHHhcC---CCCHH----HHHHHHHHHhhc
Q 024649 115 TLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAP-GYQILKNLNIISTGVLYRIILKK---KLSEI----QWAAFILLCCGC 186 (265)
Q Consensus 115 ~~~~~~~~~iPa~ly~~~n~L~~~al~~l~~~-t~qvl~q~kii~TAl~s~~~L~~---~ls~~----qw~al~ll~~Gv 186 (265)
+++....-.+-+++..+.|..++.+.+++..+ +.-+-..++++.+.++..++++| -++.. -..++++.++|+
T Consensus 69 ~~~~~~~~~l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi 148 (345)
T PRK13499 69 SGSTLLPVFLFGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGV 148 (345)
T ss_pred CHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHH
Confidence 34444555667789999999999999999977 77888889999999999999874 22333 456777888999
Q ss_pred ccccc----cCCCC----ccccchhhHHHHHHHHHHHHHHHH-------HHHHHHhhcCCCCChHHHHHHHH---HHHHH
Q 024649 187 TTAQL----NSNSD----RVLQTPLQGWIMAIVMALLSGFAG-------VYTEAIMKKRPSRNINVQNFWLY---VFGMA 248 (265)
Q Consensus 187 ~l~~~----~~~~~----~~~~~~~~G~~~vl~a~~ls~~a~-------V~~E~~lK~~~~~~~~~~n~~L~---~~g~~ 248 (265)
++... .+..+ ....+.-.|+...+++.+.+++.. +..|...+...+ +.+.-+.|.. +.+.+
T Consensus 149 ~l~s~Ag~~k~~~~~~~~~~~~~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~~g~~-~~~~~lp~~~~~~~G~~~ 227 (345)
T PRK13499 149 AIVGRAGQLKERKMGIKKAEEFNLKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAALGVD-PLYAALPSYVVIMGGGAI 227 (345)
T ss_pred HHHHHhhhhcccccccccccccchHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcCCC-chHHHHHHHHHHHHHHHH
Confidence 98877 33321 123456789999999999999888 555544333222 4555554443 56666
Q ss_pred HHHHHH
Q 024649 249 FNAVAI 254 (265)
Q Consensus 249 ~~~~~~ 254 (265)
.|++-+
T Consensus 228 ~n~~~~ 233 (345)
T PRK13499 228 TNLGFC 233 (345)
T ss_pred HHHHHH
Confidence 665543
No 68
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=94.01 E-value=0.092 Score=46.85 Aligned_cols=71 Identities=13% Similarity=0.143 Sum_probs=61.0
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHcCChhHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcccc
Q 024649 119 VIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTA 189 (265)
Q Consensus 119 ~~~~~iPa~ly~~~n~L~~~al~~l~~~t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l~ 189 (265)
++-...-|+.-.+.....|.-..+..|-+-++..-++=+||-+.|++++++.++.+||++-++.+.|+..=
T Consensus 241 ~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D 311 (337)
T KOG1580|consen 241 FWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTAD 311 (337)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhH
Confidence 34455666677777788888888999999999999999999999999999999999999999998888653
No 69
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=93.82 E-value=1.3 Score=40.06 Aligned_cols=106 Identities=12% Similarity=0.031 Sum_probs=75.2
Q ss_pred cchhhhhhhhhHHHHHHHHHHHHHHHHcCChhHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcccccccCC
Q 024649 115 TLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSN 194 (265)
Q Consensus 115 ~~~~~~~~~iPa~ly~~~n~L~~~al~~l~~~t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l~~~~~~ 194 (265)
++++.....+=++.-..-|.+.|.++..+|-++..-+-=+.++..|+ +..||..-.-|+++.++=.++.+...++.
T Consensus 67 ~~~~~~~~~~yGvsLg~MNl~FY~si~riPlGiAVAiEF~GPL~vA~----~~sRr~~d~vwvaLAvlGi~lL~p~~~~~ 142 (292)
T COG5006 67 SKPQRLALLAYGVSLGGMNLLFYLSIERIPLGIAVAIEFTGPLAVAL----LSSRRLRDFVWVALAVLGIWLLLPLGQSV 142 (292)
T ss_pred ChhhhHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhccHHHHHH----HhccchhhHHHHHHHHHHHHhheeccCCc
Confidence 44444555555666778899999999999999887766556655555 34588887888887766544443322111
Q ss_pred CCccccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 024649 195 SDRVLQTPLQGWIMAIVMALLSGFAGVYTEAIMK 228 (265)
Q Consensus 195 ~~~~~~~~~~G~~~vl~a~~ls~~a~V~~E~~lK 228 (265)
..-...|..+.+.+..+|+..-+.-+|+=+
T Consensus 143 ----~~lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~ 172 (292)
T COG5006 143 ----WSLDPVGVALALGAGACWALYIVLGQRAGR 172 (292)
T ss_pred ----CcCCHHHHHHHHHHhHHHHHHHHHcchhcc
Confidence 234568999999999999999999888853
No 70
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=93.65 E-value=0.33 Score=39.06 Aligned_cols=57 Identities=16% Similarity=0.180 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcC----CCCChHHHHHHHHHHHHHHHHHHHHhcChhh
Q 024649 205 GWIMAIVMALLSGFAGVYTEAIMKKR----PSRNINVQNFWLYVFGMAFNAVAIVIQDFDA 261 (265)
Q Consensus 205 G~~~vl~a~~ls~~a~V~~E~~lK~~----~~~~~~~~n~~L~~~g~~~~~~~~~~~d~~~ 261 (265)
|++++++++++.++..++.|+.+++. ...+.+.....+...+.++.++.....|+..
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~ 61 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQ 61 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 78899999999999999999999994 3347777777778888888877765545443
No 71
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=93.25 E-value=4.5 Score=37.95 Aligned_cols=64 Identities=14% Similarity=0.066 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHcCChhHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcccccccCC
Q 024649 131 VKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSN 194 (265)
Q Consensus 131 ~~n~L~~~al~~l~~~t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l~~~~~~ 194 (265)
+...+.-+.++.-+|..+.+=.-+..+.+.++..++.++++++..++|.++.++|..+....+.
T Consensus 245 ~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~ 308 (334)
T PF06027_consen 245 LFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAES 308 (334)
T ss_pred HHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCC
Confidence 3334445566777888788777788888999999999999999999999999999999876553
No 72
>PRK13499 rhamnose-proton symporter; Provisional
Probab=92.26 E-value=4.8 Score=37.94 Aligned_cols=76 Identities=9% Similarity=0.158 Sum_probs=55.4
Q ss_pred chhhhhhhhhHHHHHHHHHHHHHHHHcCChhHHHH---Hh-hhHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHhh
Q 024649 116 LDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQI---LK-NLNIISTGVLYRIILKKKLS------EIQWAAFILLCCG 185 (265)
Q Consensus 116 ~~~~~~~~iPa~ly~~~n~L~~~al~~l~~~t~qv---l~-q~kii~TAl~s~~~L~~~ls------~~qw~al~ll~~G 185 (265)
+++...-++++++..++|..++++-+.+...+.-+ +. |+.+++..+-.. +|||+=+ +.-+.++++.++|
T Consensus 257 ~~n~l~~~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lkE~K~a~~k~~~~l~~G~vliI~g 335 (345)
T PRK13499 257 ITNVLLSALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLKEWKGASRRPVRVLSLGCVVIILA 335 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhhhccCCCccchhHHHHHHHHHHHH
Confidence 34555568888999999999999999884442223 45 888788777776 5886555 5567778888888
Q ss_pred ccccccc
Q 024649 186 CTTAQLN 192 (265)
Q Consensus 186 v~l~~~~ 192 (265)
..++++.
T Consensus 336 ~~lig~~ 342 (345)
T PRK13499 336 ANIVGLG 342 (345)
T ss_pred HHHHhhc
Confidence 8777654
No 73
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=90.63 E-value=2.4 Score=39.18 Aligned_cols=70 Identities=14% Similarity=0.210 Sum_probs=60.2
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHcCChhHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhccc
Q 024649 119 VIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTT 188 (265)
Q Consensus 119 ~~~~~iPa~ly~~~n~L~~~al~~l~~~t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l 188 (265)
.+-+.+-+.+-++..+..|+-++...+-++..+.-++=+++-+++.++.++++++.||.+..+.+.|+.+
T Consensus 241 ~~Di~l~s~~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l 310 (327)
T KOG1581|consen 241 AFDILLYSTCGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFL 310 (327)
T ss_pred HHHHHHHHHhhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHH
Confidence 3445666677788888889999999999999999999999999999999999999999998888777754
No 74
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=90.04 E-value=9.1 Score=31.07 Aligned_cols=122 Identities=14% Similarity=0.030 Sum_probs=72.9
Q ss_pred HHHHHhhhHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhhhHHHHHHH
Q 024649 53 ALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLYLVK 132 (265)
Q Consensus 53 lL~l~~s~~~ll~~~s~~~g~~~y~~st~v~l~E~lKl~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iPa~ly~~~ 132 (265)
++.+|...+.-+.+. -| .++..+..++...++-+.+...+. ++.. ..+.. +..+.+-..+++-.+.
T Consensus 12 ~i~~q~~~N~~L~~~---~g-s~~~as~i~~~~G~i~~~i~~~~~----~~~~---~~~~~---~~p~w~~lGG~lG~~~ 77 (138)
T PF04657_consen 12 LIALQAAFNGQLGKA---LG-SPLVASFISFGVGFILLLIILLIT----GRPS---LASLS---SVPWWAYLGGLLGVFF 77 (138)
T ss_pred HHHHHHHHHHHHHHH---hC-ccHHHHHHHHHHHHHHHHHHHHHh----cccc---cchhc---cCChHHhccHHHHHHH
Confidence 444555544444333 23 378888888888887544333222 1111 11111 1123333466777777
Q ss_pred HHHHHHHHHcCChhHHHHHhh-hHHHHHHHHHHH----HhcCCCCHHHHHHHHHHHhhccc
Q 024649 133 NLLQYYIFAYVDAPGYQILKN-LNIISTGVLYRI----ILKKKLSEIQWAAFILLCCGCTT 188 (265)
Q Consensus 133 n~L~~~al~~l~~~t~qvl~q-~kii~TAl~s~~----~L~~~ls~~qw~al~ll~~Gv~l 188 (265)
-....+....+.++...++.= .+++...++-.+ .-++++++.|..++.++.+|+.+
T Consensus 78 V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 78 VLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 777777888898886555544 455555555443 35699999999999999999863
No 75
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=89.47 E-value=17 Score=33.40 Aligned_cols=128 Identities=13% Similarity=0.033 Sum_probs=85.6
Q ss_pred HHHHhhhHHHHHHHhhcCCCccchHHHHHHHHHHHHHH-HHHHHHHHHHhhcCCCCCCcccccchhhhhhhhhHHHHHHH
Q 024649 54 LTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCA-LSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLYLVK 132 (265)
Q Consensus 54 L~l~~s~~~ll~~~s~~~g~~~y~~st~v~l~E~lKl~-is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iPa~ly~~~ 132 (265)
+++.++...++-|..+.| ...-+.-|++-+. +|++.+.. -..+. .--....+..+..+...+..-++-
T Consensus 156 la~sf~~Ygl~RK~~~v~-------a~~g~~lE~l~l~p~al~yl~~--l~~~~--~~~~~~~~~~~~LLv~aG~vTavp 224 (293)
T COG2962 156 LALSFGLYGLLRKKLKVD-------ALTGLTLETLLLLPVALIYLLF--LADSG--QFLQQNANSLWLLLVLAGLVTAVP 224 (293)
T ss_pred HHHHHHHHHHHHHhcCCc-------hHHhHHHHHHHHhHHHHHHHHH--HhcCc--hhhhcCCchHHHHHHHhhHHHHHH
Confidence 344445555555554442 2334556766554 45544432 21111 000112444555666666666677
Q ss_pred HHHHHHHHHcCChhHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhccccccc
Q 024649 133 NLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN 192 (265)
Q Consensus 133 n~L~~~al~~l~~~t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l~~~~ 192 (265)
-.+.-.|.+.+|-++.-++....+...=++++++.||+++..|+.+-+..-+|+++...+
T Consensus 225 L~lf~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d 284 (293)
T COG2962 225 LLLFAAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSID 284 (293)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 777778889999999999999999999999999999999999999999998888877654
No 76
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=76.37 E-value=56 Score=29.04 Aligned_cols=57 Identities=19% Similarity=0.135 Sum_probs=49.4
Q ss_pred hhhHHHHHHHHHHHHHHHHcCChhHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHH
Q 024649 123 PIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAF 179 (265)
Q Consensus 123 ~iPa~ly~~~n~L~~~al~~l~~~t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al 179 (265)
-++-++.++...+.-..++|.|.-+=.......++.|++++..+++.++|..-.+|.
T Consensus 185 ~~~i~~~a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~ 241 (244)
T PF04142_consen 185 WIVIFLQAIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGA 241 (244)
T ss_pred HHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhhe
Confidence 346668888899999999999999888889999999999999999999997766553
No 77
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=75.74 E-value=3.9 Score=32.10 Aligned_cols=69 Identities=16% Similarity=0.180 Sum_probs=53.7
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHcCChh-HHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhccc
Q 024649 120 IVYPIPAVLYLVKNLLQYYIFAYVDAP-GYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTT 188 (265)
Q Consensus 120 ~~~~iPa~ly~~~n~L~~~al~~l~~~-t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l 188 (265)
+.|.+|=++.-....++|+-++..|-+ ..-+.+.+.+.||+++...+=.+..-..-.++..+.++|+.+
T Consensus 53 w~Y~iPFllNqcgSaly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~L 122 (125)
T KOG4831|consen 53 WEYLIPFLLNQCGSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWL 122 (125)
T ss_pred HHHHHHHHHHHhhHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhh
Confidence 578999999999999999999998866 455677789999999998754445555566677777777654
No 78
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=73.73 E-value=51 Score=27.37 Aligned_cols=127 Identities=15% Similarity=0.043 Sum_probs=69.1
Q ss_pred HHHHHhhhHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhhhHHHHHHH
Q 024649 53 ALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLYLVK 132 (265)
Q Consensus 53 lL~l~~s~~~ll~~~s~~~g~~~y~~st~v~l~E~lKl~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iPa~ly~~~ 132 (265)
++.+|++.+.=+.|+.. .+...+...+.....-+.+-..+ . .++.+ .. ...+..+..-+++++-.+.
T Consensus 16 ~l~~Q~~iN~qL~~~~~----spl~As~isf~vGt~~L~~l~l~--~-~~~~~---~a---~~~~~pwW~~~GG~lGa~~ 82 (150)
T COG3238 16 LLPLQAAINGRLARYLG----SPLLASLISFLVGTVLLLILLLI--K-QGHPG---LA---AVASAPWWAWIGGLLGAIF 82 (150)
T ss_pred hhhhHHHHHHHHHHHcC----ChHHHHHHHHHHHHHHHHHHHHH--h-cCCCc---hh---hccCCchHHHHccchhhhh
Confidence 55567666665555444 37777888888887754332211 1 12111 11 1122223344444444333
Q ss_pred HHHHHHHHHcCChhHHHHH-hhhHHHHHHHHHHHHh----cCCCCHHHHHHHHHHHhhccccccc
Q 024649 133 NLLQYYIFAYVDAPGYQIL-KNLNIISTGVLYRIIL----KKKLSEIQWAAFILLCCGCTTAQLN 192 (265)
Q Consensus 133 n~L~~~al~~l~~~t~qvl-~q~kii~TAl~s~~~L----~~~ls~~qw~al~ll~~Gv~l~~~~ 192 (265)
=...-...+.+-+++.+.+ -..+++...++=.+=+ +|+++..++.++.++.+|+.+.+..
T Consensus 83 vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~~~ 147 (150)
T COG3238 83 VTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLARRF 147 (150)
T ss_pred hhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhccc
Confidence 3333345566666655444 4445444444333322 3899999999999999997666543
No 79
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=72.28 E-value=1 Score=40.57 Aligned_cols=63 Identities=16% Similarity=0.165 Sum_probs=56.7
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHcCChhHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHH
Q 024649 117 DEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAF 179 (265)
Q Consensus 117 ~~~~~~~iPa~ly~~~n~L~~~al~~l~~~t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al 179 (265)
|..+.-.+|++...+.|..++++.+....+|---++|+.++...+=..++||||=|+.+|..+
T Consensus 207 K~t~~nii~G~~Wa~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v 269 (288)
T COG4975 207 KYTWLNIIPGLIWAIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYV 269 (288)
T ss_pred HHHHHHHhhHHHHHhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhhhhh
Confidence 456788999999999999999999999999988999999999999999999999999887653
No 80
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=70.53 E-value=39 Score=30.26 Aligned_cols=129 Identities=10% Similarity=0.145 Sum_probs=78.1
Q ss_pred HHHHHhhhHHHHHHH-hhcCCCccchHHHHHHHHHHHHHHH--HHHHHHHHHhhcCCCCCCccc--ccchhhhhhhhhHH
Q 024649 53 ALTVLTSSQAILIVW-SKRAGKYEYSVTTANFLVETLKCAL--SLAALARIWNHEGVTDDNRLS--TTLDEVIVYPIPAV 127 (265)
Q Consensus 53 lL~l~~s~~~ll~~~-s~~~g~~~y~~st~v~l~E~lKl~i--s~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~iPa~ 127 (265)
.=++.+++..+.+|- -+-++..+|. .+|-..++.+-+ ++.+++-+|.. ..+. .+......+.+.++
T Consensus 162 ~NclssaafVL~mrkri~ltNf~d~d---tmfYnNllslPiL~~~s~~~edws~------~n~annl~~d~l~am~ISgl 232 (309)
T COG5070 162 TNCLSSAAFVLIMRKRIKLTNFKDFD---TMFYNNLLSLPILLSFSFLFEDWSP------GNLANNLSVDSLMAMFISGL 232 (309)
T ss_pred hhhHhHHHHHHHHHHhhcccccchhh---HHHHhhhHHHHHHHHHHHHhccCCc------chhhcCCChHHHHHHHHHHH
Confidence 335556666666663 3333333444 466666665432 22223211111 1111 12223346777777
Q ss_pred HHHHHHHHHHHHHHcCChhHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhccccc
Q 024649 128 LYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQ 190 (265)
Q Consensus 128 ly~~~n~L~~~al~~l~~~t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l~~ 190 (265)
+-..-....-|-.+-.+++||+++..+.=.-.|+-..++++++.+.....++++-+...++-.
T Consensus 233 ~svgiSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~iYa 295 (309)
T COG5070 233 CSVGISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYA 295 (309)
T ss_pred HHhhhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHH
Confidence 766666666666677889999999998888888888888888888888888877765555443
No 81
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=67.91 E-value=14 Score=33.85 Aligned_cols=77 Identities=8% Similarity=0.067 Sum_probs=66.8
Q ss_pred ccccchhhhhhhhhHHHHHHHHHHHHHHHHcCChhHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhccc
Q 024649 112 LSTTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTT 188 (265)
Q Consensus 112 ~~~~~~~~~~~~iPa~ly~~~n~L~~~al~~l~~~t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l 188 (265)
+...+|+.+.+...++.-++..++.-.++|-=.++--+++....+++.-+.-++++|+-.+++-|.|.++.+...+.
T Consensus 246 lP~cgkdr~l~~~lGvfgfigQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~ 322 (346)
T KOG4510|consen 246 LPHCGKDRWLFVNLGVFGFIGQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVW 322 (346)
T ss_pred cCccccceEEEEEehhhhhHHHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHH
Confidence 44567788888889999999999999999999999999999999999999999999999999999987665544433
No 82
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=64.51 E-value=24 Score=30.87 Aligned_cols=49 Identities=4% Similarity=-0.090 Sum_probs=39.8
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHcCChhHHHHHhhhHHHHHHHHHHHH
Q 024649 118 EVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRII 166 (265)
Q Consensus 118 ~~~~~~iPa~ly~~~n~L~~~al~~l~~~t~qvl~q~kii~TAl~s~~~ 166 (265)
++.....-++.-.+...+.+.+++++|++..+++..+.++++.+++.++
T Consensus 207 ~~~~l~~~g~~t~i~~~l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 207 IWLLLVLAGLITGTPLLAFVIAANRLPLNLLGLLQYIGPTIMMLCVSFL 255 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444455555788999999999999999999999999999998764
No 83
>COG2149 Predicted membrane protein [Function unknown]
Probab=62.03 E-value=59 Score=25.91 Aligned_cols=58 Identities=19% Similarity=0.216 Sum_probs=42.0
Q ss_pred HHHHHHHHHHhhcccccccCCCCccccchhhHHHHHHHHHHHHHHHHH---HHHHHhhcCC
Q 024649 174 IQWAAFILLCCGCTTAQLNSNSDRVLQTPLQGWIMAIVMALLSGFAGV---YTEAIMKKRP 231 (265)
Q Consensus 174 ~qw~al~ll~~Gv~l~~~~~~~~~~~~~~~~G~~~vl~a~~ls~~a~V---~~E~~lK~~~ 231 (265)
++=-|+.++..|+.+-|+...-.++......|.++++++..+.+.+.. =.|+.+.++.
T Consensus 29 WiRTsLallafGvai~~f~~~l~~~~~r~~lg~fii~~gil~~a~g~~r~~~~~~amrr~~ 89 (120)
T COG2149 29 WIRTSLALLAFGVAIDQFVPFLATPVIRELLGVFLILVGILLAALGALRWQRVERAMRRGF 89 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 444688899999999887764333345577899999999999988876 2455555544
No 84
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=58.97 E-value=20 Score=33.39 Aligned_cols=71 Identities=17% Similarity=0.282 Sum_probs=62.1
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHcCChhHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcccc
Q 024649 119 VIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTA 189 (265)
Q Consensus 119 ~~~~~iPa~ly~~~n~L~~~al~~l~~~t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l~ 189 (265)
....+.++++-+.--...|.-+...+.-|.++..=.|-+.|-+++..+++.++|...|.++.+...|+..-
T Consensus 243 ~g~i~l~g~laF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~ 313 (349)
T KOG1443|consen 243 IGLISLGGLLAFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLH 313 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHh
Confidence 34666777776666777777888888999999999999999999999999999999999999999999876
No 85
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=58.60 E-value=3.2 Score=38.06 Aligned_cols=98 Identities=13% Similarity=0.179 Sum_probs=0.0
Q ss_pred HHHHHHcCChhHHHHHhhhHHHHHHHHHH-HHhcCC-CCHHHHHHHHHHHhhcccccccCCCCccccchhhHHHHHHHHH
Q 024649 136 QYYIFAYVDAPGYQILKNLNIISTGVLYR-IILKKK-LSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQGWIMAIVMA 213 (265)
Q Consensus 136 ~~~al~~l~~~t~qvl~q~kii~TAl~s~-~~L~~~-ls~~qw~al~ll~~Gv~l~~~~~~~~~~~~~~~~G~~~vl~a~ 213 (265)
.|+.++-+.-+..-|++++.++..-+.-. +++||| +-+.-.++++++++-+.+..+-.-. .+..+.|+++.++++
T Consensus 40 ~~iimsd~t~~a~~vl~sfAvvliiIIiIImlF~RrLLCPLGlLCiilimi~lLv~~L~tLt---GQ~LF~Gi~~l~l~~ 116 (381)
T PF05297_consen 40 FFIIMSDLTQGALTVLYSFAVVLIIIIIIIMLFKRRLLCPLGLLCIILIMIVLLVSMLWTLT---GQTLFVGIVILFLCC 116 (381)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHH
Confidence 34455556656666777766554444433 334544 5666777777776665555443221 245778988877777
Q ss_pred HHHHHHHHHHHHHhhcCCCCChHHH
Q 024649 214 LLSGFAGVYTEAIMKKRPSRNINVQ 238 (265)
Q Consensus 214 ~ls~~a~V~~E~~lK~~~~~~~~~~ 238 (265)
++.=.-=.|.| ++++... ++|.-
T Consensus 117 lLaL~vW~Ym~-lLr~~GA-s~Wti 139 (381)
T PF05297_consen 117 LLALGVWFYMW-LLRELGA-SFWTI 139 (381)
T ss_dssp -------------------------
T ss_pred HHHHHHHHHHH-HHHHhhh-HHHHH
Confidence 76655556655 6777776 78753
No 86
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=53.64 E-value=74 Score=29.64 Aligned_cols=75 Identities=11% Similarity=0.030 Sum_probs=64.3
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHcCChhHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcccccccC
Q 024649 119 VIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNS 193 (265)
Q Consensus 119 ~~~~~iPa~ly~~~n~L~~~al~~l~~~t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l~~~~~ 193 (265)
+..+.+..++-.+-|...++-.+..++.|+.++.-.....|++-..++.+++.++....|+.+.++|-++-+...
T Consensus 228 ~~~~~lScv~gf~isy~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~~ 302 (314)
T KOG1444|consen 228 LVVMLLSCVMGFGISYTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYAT 302 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhhh
Confidence 346777778888899999999999999999999977788888888888889999999999999999888776543
No 87
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=50.67 E-value=23 Score=27.70 Aligned_cols=32 Identities=13% Similarity=-0.019 Sum_probs=26.2
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHhhccc
Q 024649 157 ISTGVLYRIILKKKLSEIQWAAFILLCCGCTT 188 (265)
Q Consensus 157 i~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l 188 (265)
..-+.|+++++||++++.+..|.+++..++..
T Consensus 74 ~vF~~Fsv~~l~E~l~~n~l~af~~i~~av~f 105 (108)
T PF04342_consen 74 VVFAPFSVFYLGEPLKWNYLWAFLCILGAVYF 105 (108)
T ss_pred heeHHHHHHHhCCCccHHHHHHHHHHHHhhhe
Confidence 44567899999999999999998888766543
No 88
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=47.71 E-value=1.2e+02 Score=28.04 Aligned_cols=68 Identities=16% Similarity=0.304 Sum_probs=51.3
Q ss_pred hhhHH-HHHHHHHHHHHH-HHc-------CChhHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhccccc
Q 024649 123 PIPAV-LYLVKNLLQYYI-FAY-------VDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQ 190 (265)
Q Consensus 123 ~iPa~-ly~~~n~L~~~a-l~~-------l~~~t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l~~ 190 (265)
.+|.. .|.+.|.|..+. .+. .++-|..+....+=.+.-++|.+.++..+++.+|+|-.+.+.|..+..
T Consensus 237 ~vP~~~~yLl~n~L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa 313 (330)
T KOG1583|consen 237 KVPSMWVYLLFNVLTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFA 313 (330)
T ss_pred cccHHHHHHHHHHHHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHH
Confidence 37875 788888776543 222 233445555667778899999999999999999999999999987754
No 89
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.42 E-value=1.5e+02 Score=22.97 Aligned_cols=31 Identities=19% Similarity=-0.001 Sum_probs=25.5
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHhhccc
Q 024649 158 STGVLYRIILKKKLSEIQWAAFILLCCGCTT 188 (265)
Q Consensus 158 ~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l 188 (265)
.-..||++.||+.+.+.+|.+-.++..|+..
T Consensus 82 iFv~Fsvfyl~epl~~~~l~a~~~i~gav~f 112 (116)
T COG3169 82 IFVPFSVFYLKEPLRWNYLWAFLLILGAVYF 112 (116)
T ss_pred HHHHHHHHHHcCcchHHHHHHHHHHHHHHHH
Confidence 3457899999999999999998887776644
No 90
>PRK11715 inner membrane protein; Provisional
Probab=40.40 E-value=2.7e+02 Score=27.15 Aligned_cols=75 Identities=12% Similarity=0.135 Sum_probs=49.9
Q ss_pred cCCCCHHHHHHH--HHHHhhcccccccCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHH
Q 024649 168 KKKLSEIQWAAF--ILLCCGCTTAQLNSNSDRVLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVF 245 (265)
Q Consensus 168 ~~~ls~~qw~al--~ll~~Gv~l~~~~~~~~~~~~~~~~G~~~vl~a~~ls~~a~V~~E~~lK~~~~~~~~~~n~~L~~~ 245 (265)
|.++.+.|.+=+ .+.+.=+.++.+.++ .-++....+.++.+.++-+.|.-.++|+... .+..--+-..++
T Consensus 326 ~~~iHpiQYlLVGlAl~lFYLLLLSlSEH-------igF~~AYliAa~a~v~li~~Y~~~vl~~~k~-g~~~~~~L~~LY 397 (436)
T PRK11715 326 KLRIHPVQYLLVGLALVLFYLLLLSLSEH-------IGFTLAYLIAALACVLLIGFYLSAVLRSWKR-GLLFAAALAALY 397 (436)
T ss_pred CceecHHHHHHHHHHHHHHHHHHHHHHhh-------hchHHHHHHHHHHHHHHHHHHHHHHHhcchH-HHHHHHHHHHHH
Confidence 579999998643 333333444445443 3357778889999999999999999998774 555444445555
Q ss_pred HHHHH
Q 024649 246 GMAFN 250 (265)
Q Consensus 246 g~~~~ 250 (265)
|++..
T Consensus 398 g~Ly~ 402 (436)
T PRK11715 398 GVLYG 402 (436)
T ss_pred HHHHH
Confidence 55444
No 91
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=37.52 E-value=21 Score=32.38 Aligned_cols=124 Identities=15% Similarity=0.181 Sum_probs=84.0
Q ss_pred HHHhhhHHHHHHHhhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccchhhhhhhhhHHHHHHHHH
Q 024649 55 TVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLYLVKNL 134 (265)
Q Consensus 55 ~l~~s~~~ll~~~s~~~g~~~y~~st~v~l~E~lKl~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iPa~ly~~~n~ 134 (265)
++.|.+-|+.. .+. |+.||.++-...+.-++ +++.++... + + ..+++.+..-.+.+++..+...
T Consensus 11 ~l~WGsip~v~--~k~-GG~p~qQ~lGtT~GALi---faiiv~~~~---~-----p--~~T~~~~iv~~isG~~Ws~GQ~ 74 (288)
T COG4975 11 ALGWGSIPLVA--NKF-GGKPYQQTLGTTLGALI---FAIIVFLFV---S-----P--ELTLTIFIVGFISGAFWSFGQA 74 (288)
T ss_pred HHHhcccceee--eec-CCChhHhhhhccHHHHH---HHHHHheee---c-----C--ccchhhHHHHHHhhhHhhhhhh
Confidence 45566555432 222 44588887666555443 455444311 1 1 1234445566677788999999
Q ss_pred HHHHHHHcCChh-HHHHHhhhHHHHHHHHHHHHhcCCCCHHHH----HHHHHHHhhcccccccCC
Q 024649 135 LQYYIFAYVDAP-GYQILKNLNIISTGVLYRIILKKKLSEIQW----AAFILLCCGCTTAQLNSN 194 (265)
Q Consensus 135 L~~~al~~l~~~-t~qvl~q~kii~TAl~s~~~L~~~ls~~qw----~al~ll~~Gv~l~~~~~~ 194 (265)
.+|-+.+++..+ +-=+-...+.+-|.++.++.++|=-+..|. .|++++..|+.+....+.
T Consensus 75 ~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~ 139 (288)
T COG4975 75 NQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDR 139 (288)
T ss_pred hhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeecc
Confidence 999999998766 444556789999999999999987777775 578889999998877654
No 92
>COG2917 Intracellular septation protein A [Cell division and chromosome partitioning]
Probab=34.46 E-value=2.9e+02 Score=23.56 Aligned_cols=27 Identities=15% Similarity=0.214 Sum_probs=19.0
Q ss_pred hcCCCCHHHHHHHHHH-HhhcccccccC
Q 024649 167 LKKKLSEIQWAAFILL-CCGCTTAQLNS 193 (265)
Q Consensus 167 L~~~ls~~qw~al~ll-~~Gv~l~~~~~ 193 (265)
.-||+...||++.+.. +.|....-+++
T Consensus 43 ~~rkv~km~l~s~~~v~vFG~lTl~f~~ 70 (180)
T COG2917 43 KYRKVEKMQLISGVVVVVFGGLTLIFHN 70 (180)
T ss_pred HHhhhHHHHHHHHHHHHHhchhHhhccC
Confidence 3499999999986644 66666555543
No 93
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=32.82 E-value=2.9e+02 Score=26.13 Aligned_cols=138 Identities=14% Similarity=0.084 Sum_probs=89.3
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHcCChh-HHHHHhhhHHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHhhcccc
Q 024649 118 EVIVYPIPAVLYLVKNLLQYYIFAYVDAP-GYQILKNLNIISTGVLYRIILKK-------KLSEIQWAAFILLCCGCTTA 189 (265)
Q Consensus 118 ~~~~~~iPa~ly~~~n~L~~~al~~l~~~-t~qvl~q~kii~TAl~s~~~L~~-------~ls~~qw~al~ll~~Gv~l~ 189 (265)
.......=+++..+.+..+=.+++|+-.+ .+++...+...+-.++--++.++ +-...-..++++..+|++++
T Consensus 72 ~l~~~~l~G~lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~ 151 (344)
T PF06379_consen 72 TLFWTFLFGVLWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAIC 151 (344)
T ss_pred HHHHHHHHHHHHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHH
Confidence 34455667788889999999999998866 77777777777777775555443 33446778889999999988
Q ss_pred cccCC------C-CccccchhhHHHHHHHHHHHHHHHHHH-------HHHHhhcCCCCChHHHHH---HHHHHHHHHHHH
Q 024649 190 QLNSN------S-DRVLQTPLQGWIMAIVMALLSGFAGVY-------TEAIMKKRPSRNINVQNF---WLYVFGMAFNAV 252 (265)
Q Consensus 190 ~~~~~------~-~~~~~~~~~G~~~vl~a~~ls~~a~V~-------~E~~lK~~~~~~~~~~n~---~L~~~g~~~~~~ 252 (265)
..... + +..+.+.-.|++..+++.++|++-++= .|...+. +..+.+..+. -....|.+.|++
T Consensus 152 g~AG~~Ke~~~~~~~~efn~~kGl~iAv~sGv~Sa~fn~g~~ag~pi~~~a~a~-G~~~l~~~l~~~vvv~~GGf~tN~~ 230 (344)
T PF06379_consen 152 GKAGSMKEKELGEEAKEFNFKKGLIIAVLSGVMSACFNFGLDAGKPIHEAAVAA-GVNPLYANLPVYVVVLWGGFITNLI 230 (344)
T ss_pred hHHHHhhhhhhccchhhhhhhhhHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHc-CCCcHHHhCchhhhhhhhHHHHHHH
Confidence 65431 1 111234557999999999998877663 3333332 2213333331 123456777777
Q ss_pred HHHh
Q 024649 253 AIVI 256 (265)
Q Consensus 253 ~~~~ 256 (265)
-++.
T Consensus 231 yc~~ 234 (344)
T PF06379_consen 231 YCLI 234 (344)
T ss_pred HHHH
Confidence 6543
No 94
>PF11628 TCR_zetazeta: T-cell surface glycoprotein CD3 zeta chain; InterPro: IPR021663 The TCR complex of T-lymphocytes consists of either a TCR alpha/beta or TCR gamma/delta heterodimer co-expressed at the cell surface with the invariant subunits of CD3 labelled gamma, delta, epsilon, zeta, and eta []. The zeta subunit forms either homodimers or heterodimers with eta [], but eta homodimers have not been observed. The structure of the zetazeta transmembrane dimer consists of a left-handed coiled coil with polar contacts. Two aspartic acids are critical for zetazeta dimerisation and assembly with TCR []. The high affinity immunoglobulin epsilon receptor (IgE Fc receptor) subunit gamma associates with a variety of FcR alpha chains to form a functional signaling complex. The gamma subunit has a critical role in allowing the IgE Fc receptor to reach the cell surface and regulates several aspects of the immune response []. This family includes both CD3 zeta subunits and IgE Fc receptor gamma subunits. The gamma chain of the high affinity Fc receptor for IgE has significant structural homology to CD3 zeta and the related CD3 eta subunit and can facilitate T cell receptor expression and signaling in the absence of CD3 zeta and CD3 eta [].; PDB: 2HAC_B.
Probab=31.97 E-value=1.2e+02 Score=18.58 Aligned_cols=26 Identities=31% Similarity=0.485 Sum_probs=18.0
Q ss_pred hHHHHHHHHHHHHHHHHcCChhHHHHHhhhHHHHHHHHHHHH
Q 024649 125 PAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRII 166 (265)
Q Consensus 125 Pa~ly~~~n~L~~~al~~l~~~t~qvl~q~kii~TAl~s~~~ 166 (265)
|-++|.+.-.|..+| |++||++.+.=
T Consensus 2 P~lCYiLDgiL~iYg----------------iiiT~L~~R~K 27 (33)
T PF11628_consen 2 PRLCYILDGILFIYG----------------IIITALYCREK 27 (33)
T ss_dssp -THHHHHHHHHHHHH----------------HHHHHHHHHHH
T ss_pred CceeeeHHHHHHHHH----------------HHHHHHHHHHH
Confidence 567888888887775 47788866543
No 95
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=31.73 E-value=4.9e+02 Score=25.33 Aligned_cols=84 Identities=12% Similarity=0.150 Sum_probs=51.5
Q ss_pred HHHHHHH-HHhcCCCCHHHHHHHH--HHHhhcccccccCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 024649 158 STGVLYR-IILKKKLSEIQWAAFI--LLCCGCTTAQLNSNSDRVLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRN 234 (265)
Q Consensus 158 ~TAl~s~-~~L~~~ls~~qw~al~--ll~~Gv~l~~~~~~~~~~~~~~~~G~~~vl~a~~ls~~a~V~~E~~lK~~~~~~ 234 (265)
|.++|.. .+-|+++.+.|..=+. +.+.=+.++.+.++ .-++....+.+..+-++.+.|.-.++|+... .
T Consensus 309 F~~fflfE~~~~~~iHpiQY~LVGlAl~lFYlLLLSlSEh-------i~F~~AYliAa~a~i~Li~~Y~~~vl~~~k~-~ 380 (430)
T PF06123_consen 309 FLAFFLFELLSKLRIHPIQYLLVGLALVLFYLLLLSLSEH-------IGFNLAYLIAALACIGLISLYLSSVLKSWKR-G 380 (430)
T ss_pred HHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHhh-------hchHHHHHHHHHHHHHHHHHHHHHHHhcchH-H
Confidence 3344433 3336899999986433 33333344444432 3357778888999999999999999998764 4
Q ss_pred hHHHHHHHHHHHHHH
Q 024649 235 INVQNFWLYVFGMAF 249 (265)
Q Consensus 235 ~~~~n~~L~~~g~~~ 249 (265)
+..--+...++|.+.
T Consensus 381 ~~~~~~L~~LY~~Ly 395 (430)
T PF06123_consen 381 LIFAGLLAALYGFLY 395 (430)
T ss_pred HHHHHHHHHHHHHHH
Confidence 443333334444443
No 96
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=30.71 E-value=4.2e+02 Score=25.70 Aligned_cols=46 Identities=22% Similarity=0.290 Sum_probs=29.6
Q ss_pred CChhHHHHHhh-hHHHHHHHHHHHH--hcCCCCHHHHHHHHHHHhhccc
Q 024649 143 VDAPGYQILKN-LNIISTGVLYRII--LKKKLSEIQWAAFILLCCGCTT 188 (265)
Q Consensus 143 l~~~t~qvl~q-~kii~TAl~s~~~--L~~~ls~~qw~al~ll~~Gv~l 188 (265)
+|++.+|-++. .-++++.++++++ +++|++..+.+++.+.+.|+..
T Consensus 316 i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f 364 (500)
T PRK09584 316 VEPEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAF 364 (500)
T ss_pred ECHHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHH
Confidence 35777887777 4444555555554 3567778888887766666554
No 97
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=29.22 E-value=2.1e+02 Score=25.86 Aligned_cols=67 Identities=15% Similarity=0.197 Sum_probs=42.3
Q ss_pred CCCHHHHHHHHHH-HhhcccccccCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHH
Q 024649 170 KLSEIQWAAFILL-CCGCTTAQLNSNSDRVLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQN 239 (265)
Q Consensus 170 ~ls~~qw~al~ll-~~Gv~l~~~~~~~~~~~~~~~~G~~~vl~a~~ls~~a~V~~E~~lK~~~~~~~~~~n 239 (265)
|+|.+|...++.. ..|.....+...-.+.. . -|+..++++.+...+-....-++.|+.++.++....
T Consensus 1 kIS~~Q~~~l~~~~~~g~~~l~~p~~l~~~~--~-d~Wi~~ll~~~~~l~~~~l~~~l~~~~p~~~l~~~~ 68 (320)
T PF03845_consen 1 KISPRQLFFLLISSIIGTGILFLPAILAEQA--G-DAWISVLLGGLIGLLLALLIYYLLKRFPGKTLVEIS 68 (320)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHc--C-CcHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 6799999998875 56666655443211001 1 366777777777777777777778876665665443
No 98
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=29.18 E-value=1.6e+02 Score=26.95 Aligned_cols=32 Identities=13% Similarity=0.136 Sum_probs=27.0
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 024649 200 QTPLQGWIMAIVMALLSGFAGVYTEAIMKKRP 231 (265)
Q Consensus 200 ~~~~~G~~~vl~a~~ls~~a~V~~E~~lK~~~ 231 (265)
.+..+|+.+.++++++.+.+..+.|+-.++.+
T Consensus 3 ~~~~iGv~lav~ss~~~~~g~~lqk~~~~r~~ 34 (300)
T PF05653_consen 3 TDFYIGVLLAVVSSIFIAVGFNLQKKSHLRLP 34 (300)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35678999999999999999999998866543
No 99
>PF10856 DUF2678: Protein of unknown function (DUF2678); InterPro: IPR022564 This family of proteins has no known function.
Probab=26.47 E-value=77 Score=25.20 Aligned_cols=10 Identities=30% Similarity=0.212 Sum_probs=4.4
Q ss_pred CCCccccccc
Q 024649 16 SSSGDLESLR 25 (265)
Q Consensus 16 ~~~~~~~~~~ 25 (265)
.+++|-+.+-
T Consensus 11 ~~g~~~rPLF 20 (118)
T PF10856_consen 11 TSGKDNRPLF 20 (118)
T ss_pred CCCcCCCccc
Confidence 3455444333
No 100
>PF04279 IspA: Intracellular septation protein A ; InterPro: IPR006008 Intracellular septation protein A is a family of proteins which are essential for both normal cell division and bacterial virulence and are believed to play a role in the septation process [].; GO: 0016021 integral to membrane
Probab=24.89 E-value=4.2e+02 Score=22.29 Aligned_cols=30 Identities=27% Similarity=0.618 Sum_probs=19.6
Q ss_pred HHHHhcCCCCHHHHHHHHHH-Hhhccccccc
Q 024649 163 YRIILKKKLSEIQWAAFILL-CCGCTTAQLN 192 (265)
Q Consensus 163 s~~~L~~~ls~~qw~al~ll-~~Gv~l~~~~ 192 (265)
...+.+||++..||++.++. +.|....-.+
T Consensus 39 ~~~~~~r~v~~~~~is~~lv~vfG~lTl~~~ 69 (176)
T PF04279_consen 39 YSWIRRRKVPKMQWISLVLVLVFGGLTLLFH 69 (176)
T ss_pred HHHHHhCcCchhHHHHHHHHHHHHHHHHHhC
Confidence 34555699999999997755 4444333333
No 101
>COG4711 Predicted membrane protein [Function unknown]
Probab=22.82 E-value=2.8e+02 Score=24.39 Aligned_cols=75 Identities=15% Similarity=0.165 Sum_probs=43.6
Q ss_pred HHHhcCCCCHHHHHHHHHHHhhcccccccC---CCCccccchhh-----HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCh
Q 024649 164 RIILKKKLSEIQWAAFILLCCGCTTAQLNS---NSDRVLQTPLQ-----GWIMAIVMALLSGFAGVYTEAIMKKRPSRNI 235 (265)
Q Consensus 164 ~~~L~~~ls~~qw~al~ll~~Gv~l~~~~~---~~~~~~~~~~~-----G~~~vl~a~~ls~~a~V~~E~~lK~~~~~~~ 235 (265)
++++-.|+|+.+-+++++.+++++-..+.. .+++. ...-. =+.-+++..+++.+++.|.=....+-+..+
T Consensus 114 vwllA~~isp~h~lal~~~~l~I~y~fvy~a~f~~~~~-~~~~~g~vp~rl~~tmv~y~~~~l~~~y~l~~f~~~~~~~- 191 (217)
T COG4711 114 VWLLAYRISPYHSLALVLVVLVIMYSFVYTAKFGNDKK-REEGAGFVPRRLRTTMVIYFVSSLASIYMLGIFTRFDFTT- 191 (217)
T ss_pred HHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhhcCCCcc-cccccceeeeehHHHHHHHHHHHHHHHHHHHhhhhhhhhH-
Confidence 567889999999999999988887654322 12211 01111 123455666666677766555555444323
Q ss_pred HHHHH
Q 024649 236 NVQNF 240 (265)
Q Consensus 236 ~~~n~ 240 (265)
|.|-+
T Consensus 192 ~t~~i 196 (217)
T COG4711 192 VTQAI 196 (217)
T ss_pred HHHHH
Confidence 44433
No 102
>PRK02237 hypothetical protein; Provisional
Probab=22.12 E-value=1.5e+02 Score=23.21 Aligned_cols=47 Identities=6% Similarity=0.126 Sum_probs=34.8
Q ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcccccccC
Q 024649 147 GYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNS 193 (265)
Q Consensus 147 t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l~~~~~ 193 (265)
+|..=...=|+.+-+..+.+=|.|.++..|.+-.+..+|+.++.+.+
T Consensus 61 vYAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~p 107 (109)
T PRK02237 61 VYAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYAP 107 (109)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheecC
Confidence 33333344444444677778899999999999999999998886654
No 103
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=21.77 E-value=4e+02 Score=20.93 Aligned_cols=17 Identities=12% Similarity=-0.115 Sum_probs=9.9
Q ss_pred chHHHHHHHHHHHHHHH
Q 024649 76 YSVTTANFLVETLKCAL 92 (265)
Q Consensus 76 y~~st~v~l~E~lKl~i 92 (265)
...+...++..++-++-
T Consensus 73 ~~~~~~llilG~L~fIP 89 (115)
T PF05915_consen 73 RDRGWALLILGILCFIP 89 (115)
T ss_pred CcccchHHHHHHHHHhc
Confidence 33455666677765553
No 104
>PRK11901 hypothetical protein; Reviewed
Probab=20.47 E-value=1.3e+02 Score=28.23 Aligned_cols=27 Identities=22% Similarity=0.187 Sum_probs=15.5
Q ss_pred cccccccCCCCCCCcccccccCCCCcccc
Q 024649 5 KIKDEDNDGGGSSSGDLESLRGKPISVTN 33 (265)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 33 (265)
..|-+|+.+- .-+|+-..|.|..+.++
T Consensus 3 Efkpe~elkP--DtSDRrp~Rsr~~~~~p 29 (327)
T PRK11901 3 EFKPEDELKP--DTSDRRPTRSRKSSNGP 29 (327)
T ss_pred cCCcccccCC--CcccCCCcccccCCCCC
Confidence 3455555554 55777777777555443
Done!