Query 024649
Match_columns 265
No_of_seqs 188 out of 858
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 12:01:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024649.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024649hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b5d_A Multidrug transporter E 98.2 6.4E-06 2.2E-10 63.6 9.3 73 121-193 32-105 (110)
2 2i68_A Protein EMRE; transmemb 98.0 6.6E-06 2.3E-10 66.1 5.2 72 122-193 33-105 (137)
3 2hac_A T-cell surface glycopro 27.3 99 0.0034 18.1 3.8 27 125-167 2-28 (33)
4 3b9w_A Ammonium transporter fa 7.6 7.4E+02 0.025 22.6 6.3 83 157-241 150-243 (407)
5 3hd6_A Ammonium transporter RH 6.5 1.1E+03 0.036 22.1 6.9 71 157-227 194-276 (490)
6 4e18_B Catenin alpha-1; four h 5.0 2.7E+02 0.0093 18.4 1.3 53 18-70 5-57 (59)
7 2fyu_K Ubiquinol-cytochrome C 5.0 5.9E+02 0.02 16.5 2.9 23 242-264 21-43 (56)
8 7cei_B Protein (colicin E7 imm 4.9 2.6E+02 0.0089 23.1 1.4 41 1-44 54-94 (206)
9 3ul0_C Nuclear CAP-binding pro 3.8 5.9E+02 0.02 13.6 1.8 11 1-11 3-13 (26)
10 2hn8_A Protein PB1-F2; Pro-apo 3.1 1.1E+02 0.0037 18.4 -1.7 11 169-179 5-15 (38)
No 1
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.23 E-value=6.4e-06 Score=63.58 Aligned_cols=73 Identities=16% Similarity=0.174 Sum_probs=64.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHcCChhHHHHH-hhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcccccccC
Q 024649 121 VYPIPAVLYLVKNLLQYYIFAYVDAPGYQIL-KNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNS 193 (265)
Q Consensus 121 ~~~iPa~ly~~~n~L~~~al~~l~~~t~qvl-~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l~~~~~ 193 (265)
....-.++|.+...+...+++++|.++..-+ ....++.+++++++++||++|+.||.++.+.++|+..+...+
T Consensus 32 ~~~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 32 PSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 3445556899999999999999999977666 899999999999999999999999999999999999887654
No 2
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=97.98 E-value=6.6e-06 Score=66.11 Aligned_cols=72 Identities=17% Similarity=0.184 Sum_probs=52.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHcCChhHHHHH-hhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcccccccC
Q 024649 122 YPIPAVLYLVKNLLQYYIFAYVDAPGYQIL-KNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNS 193 (265)
Q Consensus 122 ~~iPa~ly~~~n~L~~~al~~l~~~t~qvl-~q~kii~TAl~s~~~L~~~ls~~qw~al~ll~~Gv~l~~~~~ 193 (265)
..+-.++|.+...+.+.+++++|+++...+ ....++++++++++++||++++.||+|+.+.++|+.++...+
T Consensus 33 ~~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 33 SVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp -CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 345556899999999999999999955555 899999999999999999999999999999999999987643
No 3
>2hac_A T-cell surface glycoprotein CD3 zeta chain; transmembrane, alpha helix, membrane protein; NMR {Homo sapiens}
Probab=27.33 E-value=99 Score=18.12 Aligned_cols=27 Identities=26% Similarity=0.508 Sum_probs=18.9
Q ss_pred hHHHHHHHHHHHHHHHHcCChhHHHHHhhhHHHHHHHHHHHHh
Q 024649 125 PAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIIL 167 (265)
Q Consensus 125 Pa~ly~~~n~L~~~al~~l~~~t~qvl~q~kii~TAl~s~~~L 167 (265)
|-++|.+.-.|..+| +++|+++.+.=+
T Consensus 2 p~lCYiLDgiL~iYg----------------ii~T~Ly~R~K~ 28 (33)
T 2hac_A 2 SKLCYLLDGILFIYG----------------VILTALFLRVKF 28 (33)
T ss_dssp CTHHHHHHHHHHHHH----------------HHHHHHHHHHHS
T ss_pred CceEeehHHHHHHHH----------------HHHHHHHHHHHh
Confidence 557788888777765 477888766543
No 4
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*
Probab=7.63 E-value=7.4e+02 Score=22.57 Aligned_cols=83 Identities=12% Similarity=0.053 Sum_probs=44.7
Q ss_pred HHHHHHHHHHhcCCCCH-----HHHHHHHHHHhhcccc-----cccCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 024649 157 ISTGVLYRIILKKKLSE-----IQWAAFILLCCGCTTA-----QLNSNSDRVLQTPLQGWIMAIVMALLSGFAGVYTEAI 226 (265)
Q Consensus 157 i~TAl~s~~~L~~~ls~-----~qw~al~ll~~Gv~l~-----~~~~~~~~~~~~~~~G~~~vl~a~~ls~~a~V~~E~~ 226 (265)
-..|+...++|+||... .+--++.+.++|..+. .++.... ........++=+.+++..+++.....++.
T Consensus 150 G~~aLa~a~~LG~R~~~~~~~~~~~hn~~~~~lGt~lLW~GWfGFN~Gl~-~~~~~~~a~~NT~lAaaag~l~~~~~~~~ 228 (407)
T 3b9w_A 150 AYFGLGVSIALTTAAQRAQPIESDATSDRFSMLGSMVLWLFWPSFATAIV-PFEQMPQTIVNTLLALCGATLATYFLSAL 228 (407)
T ss_dssp HHHHHHHHHHHCCHHHHTSCCCCCHHHHHHHHHHHHHHHHHHHHHHHTTS-CGGGHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhcCccccCCCCcCCCCCHHHHHHHHHHHHHHHHhhhhhhc-cchhhHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 45677777888876421 2233455555555543 1222111 11223344556777777788888878877
Q ss_pred h-hcCCCCChHHHHHH
Q 024649 227 M-KKRPSRNINVQNFW 241 (265)
Q Consensus 227 l-K~~~~~~~~~~n~~ 241 (265)
+ +++.+ ....+|.-
T Consensus 229 ~~~gK~~-~~~~~nG~ 243 (407)
T 3b9w_A 229 FHKGKAS-IVDMANAA 243 (407)
T ss_dssp HTTTCCC-HHHHHHHT
T ss_pred HhCCCCC-HHHHHHhh
Confidence 4 34333 45555543
No 5
>3hd6_A Ammonium transporter RH type C; ammonia, channel, rhesus, glycoprotein, membran structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Homo sapiens}
Probab=6.53 E-value=1.1e+03 Score=22.13 Aligned_cols=71 Identities=11% Similarity=0.018 Sum_probs=38.6
Q ss_pred HHHHHHHHHHhcCCCC-------HHHHHHHHHHHhhcccc-----cccCCCCccccchhhHHHHHHHHHHHHHHHHHHHH
Q 024649 157 ISTGVLYRIILKKKLS-------EIQWAAFILLCCGCTTA-----QLNSNSDRVLQTPLQGWIMAIVMALLSGFAGVYTE 224 (265)
Q Consensus 157 i~TAl~s~~~L~~~ls-------~~qw~al~ll~~Gv~l~-----~~~~~~~~~~~~~~~G~~~vl~a~~ls~~a~V~~E 224 (265)
-..|+...++|+||-. ...--++.+.++|..+. .++.............++=+.+++..+++.....|
T Consensus 194 G~aaLa~a~vLG~R~~~~~~~~~~~~~hn~~~a~LGt~lLW~GWfGFN~gs~~~~~~~~~a~~NT~lAaAag~lt~~~~s 273 (490)
T 3hd6_A 194 AYFGLTVTRILYRRNLEQSKERQNSVYQSDLFAMIGTLFLWMYWPSFNSAISYHGDSQHRAAINTYCSLAACVLTSVAIS 273 (490)
T ss_dssp HHHHHHHHHHTCCTTGGGGTTTSSCCHHHHHHHHHHHHHHHHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcccccCCCCCCCCCCCHHHHHHHHHHHHHHHHhhchhhhccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777788886621 11124555556665553 33332211011122344556677777888888888
Q ss_pred HHh
Q 024649 225 AIM 227 (265)
Q Consensus 225 ~~l 227 (265)
++.
T Consensus 274 ~l~ 276 (490)
T 3hd6_A 274 SAL 276 (490)
T ss_dssp HHT
T ss_pred HHH
Confidence 874
No 6
>4e18_B Catenin alpha-1; four helix bundle, cell adhesion; 2.40A {Mus musculus}
Probab=5.04 E-value=2.7e+02 Score=18.42 Aligned_cols=53 Identities=21% Similarity=0.125 Sum_probs=28.9
Q ss_pred CcccccccCCCCccccccCCCcccchhhHHHHHHHHHHHHhhhHHHHHHHhhc
Q 024649 18 SGDLESLRGKPISVTNVASKSSELANWKRKSVVTLALTVLTSSQAILIVWSKR 70 (265)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~l~~s~~~ll~~~s~~ 70 (265)
+.++|..-++=+|+|+...++.....-.++-++.-.=.+..+.|-|+..|-++
T Consensus 5 r~~Lee~le~Iisgaa~~Ads~~tr~~rke~Iv~eCnavrqALQdLlsEY~~~ 57 (59)
T 4e18_B 5 RPSLEERLESIISGAALMADSSCTRDDRRERIVAECNAVRQALQDLLSEYMGN 57 (59)
T ss_dssp CCCHHHHHHHHHHHCC----------CHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred chhHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33444444455666776666666655567777666667888888888887665
No 7
>2fyu_K Ubiquinol-cytochrome C reductase complex 6.4 kDa; transmembrane helices, 11 protein complex, oxidoreductase; HET: HEM FDN; 2.26A {Bos taurus} SCOP: f.23.15.1 PDB: 1sqq_K* 1sqv_K* 1sqx_K* 1l0l_K* 1ntk_K* 1ntm_K* 1ntz_K* 1nu1_K* 1sqp_K* 1sqb_K* 1be3_K* 1bgy_K* 2ybb_K* 1l0n_K* 1qcr_K*
Probab=4.97 E-value=5.9e+02 Score=16.47 Aligned_cols=23 Identities=9% Similarity=0.190 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHhcChhhhhc
Q 024649 242 LYVFGMAFNAVAIVIQDFDAVMN 264 (265)
Q Consensus 242 L~~~g~~~~~~~~~~~d~~~v~~ 264 (265)
++.||..-.+..+.+.|++.|.+
T Consensus 21 a~~~Gaaa~v~~ly~tdwr~IL~ 43 (56)
T 2fyu_K 21 ASLWGAVGAVGLVWATDWRLILD 43 (56)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHT
T ss_pred hhhhhhhhhhheeeeccHHHHHh
Confidence 56778776666677778877654
No 8
>7cei_B Protein (colicin E7 immunity protein); DNAse, E-group colicins, protein-protein interaction, protei recognition, immune system; 2.30A {Escherichia coli str} SCOP: d.4.1.1
Probab=4.88 E-value=2.6e+02 Score=23.11 Aligned_cols=41 Identities=15% Similarity=0.251 Sum_probs=10.6
Q ss_pred CccccccccccCCCCCCCcccccccCCCCccccccCCCcccchh
Q 024649 1 MEYRKIKDEDNDGGGSSSGDLESLRGKPISVTNVASKSSELANW 44 (265)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 44 (265)
||-||-|....-+ ....+-.++||..|+-....+-..+..|
T Consensus 54 ~e~rk~ke~~~~~---a~~kl~~espR~~PGvvTG~Gq~V~g~W 94 (206)
T 7cei_B 54 LERRKQKENKEKD---AKAKLDKESKRNKPGKATGKGKPVNNKW 94 (206)
T ss_dssp --------------------------CCCCCBCBCCCBCCCTTS
T ss_pred HHHHHhhhhhhhh---hHHHhhhhccccCCCeeeccCeEcCchh
Confidence 6777766543322 2334566777877777664444444444
No 9
>3ul0_C Nuclear CAP-binding protein subunit 1; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 2.00A {Mus musculus} PDB: 3ukz_C
Probab=3.79 E-value=5.9e+02 Score=13.56 Aligned_cols=11 Identities=36% Similarity=0.628 Sum_probs=7.2
Q ss_pred Ccccccccccc
Q 024649 1 MEYRKIKDEDN 11 (265)
Q Consensus 1 ~~~~~~~~~~~ 11 (265)
|.-|+|.|+.+
T Consensus 3 msrrrhsdend 13 (26)
T 3ul0_C 3 MSRRRHSDEND 13 (26)
T ss_dssp CCCCCCTTSCS
T ss_pred ccccccccccC
Confidence 55677877743
No 10
>2hn8_A Protein PB1-F2; Pro-apoptotic mitochondrial targeting protein, viral protein; NMR {Synthetic}
Probab=3.13 E-value=1.1e+02 Score=18.37 Aligned_cols=11 Identities=18% Similarity=0.356 Sum_probs=6.7
Q ss_pred CCCCHHHHHHH
Q 024649 169 KKLSEIQWAAF 179 (265)
Q Consensus 169 ~~ls~~qw~al 179 (265)
+..++.||+++
T Consensus 5 qtv~wkqWlsl 15 (38)
T 2hn8_A 5 QIVYWKQWLSL 15 (38)
T ss_dssp HHHHHHHHHTT
T ss_pred cceeHHHHhhc
Confidence 33456777764
Done!