Query 024649
Match_columns 265
No_of_seqs 188 out of 858
Neff 7.0
Searched_HMMs 13730
Date Mon Mar 25 12:01:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024649.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/024649hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2r6gf1 e.70.1.1 (F:13-260) Ma 12.0 2.4E+02 0.018 21.9 6.7 57 120-180 3-59 (248)
2 d1fftb2 f.17.2.1 (B:27-117) Cy 6.0 1.2E+02 0.009 19.7 1.9 31 115-145 60-90 (91)
3 d3cx5c2 f.21.1.2 (C:1-261) Mit 3.1 6E+02 0.043 19.5 4.3 48 39-87 25-72 (261)
4 d2fyuk1 f.23.15.1 (K:1-53) Sub 3.0 5.1E+02 0.037 15.1 2.9 22 242-263 21-42 (53)
5 d1xbta2 g.39.1.14 (A:151-191) 3.0 2.5E+02 0.018 15.4 1.3 18 2-21 13-30 (41)
6 d1r3jc_ f.14.1.1 (C:) Potassiu 2.7 6.8E+02 0.049 15.6 5.9 45 186-230 52-101 (103)
7 d2pgga1 e.8.1.4 (A:31-804) Vir 2.5 3.6E+02 0.026 24.0 2.4 31 56-87 399-430 (774)
8 d1q90b_ f.21.1.2 (B:) Cytochro 2.4 7.1E+02 0.052 18.4 3.9 39 39-77 26-64 (212)
9 d1ppjc2 f.21.1.2 (C:15-260) Mi 2.4 8.2E+02 0.06 18.3 4.4 48 39-87 12-59 (246)
10 d2axth1 f.23.33.1 (H:2-65) Pho 2.2 7.5E+02 0.055 14.8 2.9 29 200-228 26-54 (64)
No 1
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=12.02 E-value=2.4e+02 Score=21.86 Aligned_cols=57 Identities=12% Similarity=0.102 Sum_probs=32.6
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHcCChhHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 024649 120 IVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFI 180 (265)
Q Consensus 120 ~~~~iPa~ly~~~n~L~~~al~~l~~~t~qvl~q~kii~TAl~s~~~L~~~ls~~qw~al~ 180 (265)
+|+++-+++.++.-.+....+..=.-. +.-.-++.+++.-++++.||.-+.+|+-=.
T Consensus 3 lK~~ll~l~~a~~~~~~~~~~~~~~~~----~a~~~~~~~~~~~~vy~s~r~~p~kyi~PG 59 (248)
T d2r6gf1 3 LKWSVLGLLGLLVGYLVVLMYAQGEYL----FAITTLILSSAGLYIFANRKAYAWRYVYPG 59 (248)
T ss_dssp CTHHHHHHHHHHHHHTHHHHHGGGCHH----HHHHHHHHHHHHHHHHSSSCCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcchHH----HHHHHHHHHHheEEEEEccCccceehhhhH
Confidence 455555555554433333333222211 122445777788888999999999987533
No 2
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=6.00 E-value=1.2e+02 Score=19.65 Aligned_cols=31 Identities=13% Similarity=0.335 Sum_probs=18.4
Q ss_pred cchhhhhhhhhHHHHHHHHHHHHHHHHcCCh
Q 024649 115 TLDEVIVYPIPAVLYLVKNLLQYYIFAYVDA 145 (265)
Q Consensus 115 ~~~~~~~~~iPa~ly~~~n~L~~~al~~l~~ 145 (265)
.+-|.....+|+++-..=-...+-++..+||
T Consensus 60 ~~lEi~WtiIP~iil~~iav~s~~~~~~lDp 90 (91)
T d1fftb2 60 NKVEAVVWTVPILIIIFLAVLTWKTTHALEP 90 (91)
T ss_dssp SHHHHHTTHHHHHHHHHHHHHHHHHSCTTCC
T ss_pred ceehhhHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 3457778889998655444444444444555
No 3
>d3cx5c2 f.21.1.2 (C:1-261) Mitochondrial cytochrome b subunit, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=3.06 E-value=6e+02 Score=19.51 Aligned_cols=48 Identities=13% Similarity=0.182 Sum_probs=32.4
Q ss_pred cccchhhHHHHHHHHHHHHhhhHHHHHHHhhcCCCccchHHHHHHHHHH
Q 024649 39 SELANWKRKSVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVET 87 (265)
Q Consensus 39 ~~~~~~~~~~~~l~lL~l~~s~~~ll~~~s~~~g~~~y~~st~v~l~E~ 87 (265)
+.+--|..+.+..+.+++|-.+..++.-++..+.+..|.+ ..-...|+
T Consensus 25 ~in~~w~~G~ll~~~~~iqiiTGi~L~~~Y~p~~~~A~~S-v~~i~~~v 72 (261)
T d3cx5c2 25 SINYWWNMGSLLGLCLVIQIVTGIFMAMHYSSNIELAFSS-VEHIMRDV 72 (261)
T ss_dssp TCCGGGGHHHHHHHHHHHHHHHHHHHHTTCCCSTTTHHHH-HHHHHHTS
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHheecCChHHHHHH-HHHHHhhh
Confidence 4556678899999999998877777777776655556653 33344444
No 4
>d2fyuk1 f.23.15.1 (K:1-53) Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.00 E-value=5.1e+02 Score=15.09 Aligned_cols=22 Identities=9% Similarity=0.166 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHhcChhhhh
Q 024649 242 LYVFGMAFNAVAIVIQDFDAVM 263 (265)
Q Consensus 242 L~~~g~~~~~~~~~~~d~~~v~ 263 (265)
+..||..-.+......||+.|.
T Consensus 21 ~~~~G~a~gl~lvy~TDWklil 42 (53)
T d2fyuk1 21 ASLWGAVGAVGLVWATDWRLIL 42 (53)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHH
T ss_pred hhhhhhhhheeeeeeehHHHHH
Confidence 4566766566666778988764
No 5
>d1xbta2 g.39.1.14 (A:151-191) Thymidine kinase, TK1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.96 E-value=2.5e+02 Score=15.37 Aligned_cols=18 Identities=11% Similarity=-0.012 Sum_probs=12.0
Q ss_pred ccccccccccCCCCCCCccc
Q 024649 2 EYRKIKDEDNDGGGSSSGDL 21 (265)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~ 21 (265)
.+|++.|.|++.- |++|.
T Consensus 13 t~R~~~~~~~v~I--Gg~d~ 30 (41)
T d1xbta2 13 TKRLGTEKEVEVI--GGADK 30 (41)
T ss_dssp EEECSCCCSSCCC--CSTTT
T ss_pred EEEEcCCCCEEEE--CCCCc
Confidence 3678888877764 55554
No 6
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=2.67 E-value=6.8e+02 Score=15.60 Aligned_cols=45 Identities=11% Similarity=0.050 Sum_probs=18.4
Q ss_pred cccccccCCCCccccchhhHHHHHHHHH-----HHHHHHHHHHHHHhhcC
Q 024649 186 CTTAQLNSNSDRVLQTPLQGWIMAIVMA-----LLSGFAGVYTEAIMKKR 230 (265)
Q Consensus 186 v~l~~~~~~~~~~~~~~~~G~~~vl~a~-----~ls~~a~V~~E~~lK~~ 230 (265)
+..++.++.........+.+.+.++.+. .++-++..+.|+--|++
T Consensus 52 ~tTvGYGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i~~~~~~~~~~rr 101 (103)
T d1r3jc_ 52 ATTVGYGDLYPVTLWGRCVAVVVMVAGITSFGLVTAALATWFVGREQERR 101 (103)
T ss_dssp HTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ecccccCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445555443222223344444443333 33334444555544443
No 7
>d2pgga1 e.8.1.4 (A:31-804) Viral RNA polymerase {Avian infectious bursal disease virus [TaxId: 10995]}
Probab=2.53 E-value=3.6e+02 Score=23.99 Aligned_cols=31 Identities=26% Similarity=0.364 Sum_probs=22.0
Q ss_pred HHhhhHHHHHH-HhhcCCCccchHHHHHHHHHH
Q 024649 56 VLTSSQAILIV-WSKRAGKYEYSVTTANFLVET 87 (265)
Q Consensus 56 l~~s~~~ll~~-~s~~~g~~~y~~st~v~l~E~ 87 (265)
.|..+.=|+.| |+ .+|...|+++.+.+..-+
T Consensus 399 aqa~~yyLLTRGWs-~~G~P~fN~TWAt~am~~ 430 (774)
T d2pgga1 399 MQAAMYYILTRGWS-DNGDPMFNQTWATFAMNI 430 (774)
T ss_dssp HHHHHHHHHHHHSE-ETTEECBCHHHHHHHHHT
T ss_pred HHHHHHHHHHccCC-cCCCccccHHHHHHHHhc
Confidence 34455556666 88 589999999988765544
No 8
>d1q90b_ f.21.1.2 (B:) Cytochrome b6 subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=2.40 E-value=7.1e+02 Score=18.39 Aligned_cols=39 Identities=3% Similarity=-0.023 Sum_probs=27.6
Q ss_pred cccchhhHHHHHHHHHHHHhhhHHHHHHHhhcCCCccch
Q 024649 39 SELANWKRKSVVTLALTVLTSSQAILIVWSKRAGKYEYS 77 (265)
Q Consensus 39 ~~~~~~~~~~~~l~lL~l~~s~~~ll~~~s~~~g~~~y~ 77 (265)
+.+..|..+.+..+.+++|-.+..++.-++..+.+..|.
T Consensus 26 ~~~~~~~~Gsll~~~~~iqi~TGi~L~~~Y~p~~~~A~~ 64 (212)
T d1q90b_ 26 HVNIFYCIGGITFTCFLVQVATGFAMTFYYRPTVAEAFA 64 (212)
T ss_dssp TCCSGGGHHHHHHHHHHHHHHHHHHHTTTCCCSTTTHHH
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 345567889999999999877777776666655444555
No 9
>d1ppjc2 f.21.1.2 (C:15-260) Mitochondrial cytochrome b subunit, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=2.39 E-value=8.2e+02 Score=18.31 Aligned_cols=48 Identities=10% Similarity=0.162 Sum_probs=31.6
Q ss_pred cccchhhHHHHHHHHHHHHhhhHHHHHHHhhcCCCccchHHHHHHHHHH
Q 024649 39 SELANWKRKSVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVET 87 (265)
Q Consensus 39 ~~~~~~~~~~~~l~lL~l~~s~~~ll~~~s~~~g~~~y~~st~v~l~E~ 87 (265)
+.+--|..+.+..+.+++|-.+..++.-++..+....|. +......|+
T Consensus 12 nl~~~w~~G~ll~~~~~iqiiTGi~L~~~Y~p~~~~A~~-Sv~~i~~~v 59 (246)
T d1ppjc2 12 NISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFS-SVTHICRDV 59 (246)
T ss_dssp TCCGGGSHHHHHHHHHHHHHHHHHHHHTTCCCCTTTHHH-HHHHHHHHS
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHH-HHHHhcCcc
Confidence 445567889999999999987777777666655444554 333444444
No 10
>d2axth1 f.23.33.1 (H:2-65) Photosystem II reaction center protein H, PsbH {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=2.15 E-value=7.5e+02 Score=14.80 Aligned_cols=29 Identities=21% Similarity=0.419 Sum_probs=22.3
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 024649 200 QTPLQGWIMAIVMALLSGFAGVYTEAIMK 228 (265)
Q Consensus 200 ~~~~~G~~~vl~a~~ls~~a~V~~E~~lK 228 (265)
..++-|+++.+.+.++.=+-.+|+..++-
T Consensus 26 TTplMgv~m~Lf~vfl~iiLeiYNss~ll 54 (64)
T d2axth1 26 TTPLMAVFMGLFLVFLLIILEIYNSTLIL 54 (64)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHTTSSCC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhccceee
Confidence 45788999999999888887877665543
Done!