BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>024650
MGMQAASAAASLSFIYSLKWGAPNSAQIFVTPSNKLPLKTNATHFPCPKFTNNKVKTRAT
LGEKDDIAPPTPLLVQEKEQSNREVEESVKILKKAAKTRKVAAAEILSALSVIEKAKIDY
SGFLETLGGSESPGRTWMLIFTAEKKLKSGRYFPVTAVQRFDAAAKRIENGVYLGPIGCL
TFEGRFSWKKRMLAFIFERVHIKIGPLKPLEIGFGQKDNREPSTVSKDPFFVWFYIDEEI
AVARGRAGGTAFWCRCRRVTTSYSL

High Scoring Gene Products

Symbol, full name Information P value
AT1G18060 protein from Arabidopsis thaliana 1.3e-68

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  024650
        (265 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2194120 - symbol:AT1G18060 "AT1G18060" species...   696  1.3e-68   1


>TAIR|locus:2194120 [details] [associations]
            symbol:AT1G18060 "AT1G18060" species:3702 "Arabidopsis
            thaliana" [GO:0008150 "biological_process" evidence=ND] [GO:0009507
            "chloroplast" evidence=IDA] [GO:0006098 "pentose-phosphate shunt"
            evidence=RCA] [GO:0010027 "thylakoid membrane organization"
            evidence=RCA] [GO:0010264 "myo-inositol hexakisphosphate
            biosynthetic process" evidence=RCA] EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0009507 EMBL:AC069551 EMBL:AY048224
            EMBL:AY091701 EMBL:AK229549 IPI:IPI00531971 PIR:A86316
            RefSeq:NP_564046.1 UniGene:At.14955 STRING:Q9LM40 PaxDb:Q9LM40
            PRIDE:Q9LM40 EnsemblPlants:AT1G18060.1 GeneID:838386
            KEGG:ath:AT1G18060 TAIR:At1g18060 eggNOG:NOG251589
            HOGENOM:HOG000237445 InParanoid:Q9LM40 OMA:ESPGRTW PhylomeDB:Q9LM40
            ProtClustDB:CLSN2687849 Genevestigator:Q9LM40 Uniprot:Q9LM40
        Length = 226

 Score = 696 (250.1 bits), Expect = 1.3e-68, P = 1.3e-68
 Identities = 137/206 (66%), Positives = 157/206 (76%)

Query:    58 RATLGEKDDIAPPTPLLVQEKEQ-SNREVEESVKILXXXXXXXXXXXXEILSALSVIEKA 116
             +AT+  ++ I PP       K+Q  N++V ESV +L            EIL+A S IEKA
Sbjct:    29 KATVDGRNQIVPPA------KDQIPNKQVTESVNVLKTAAKTRKVAADEILAAFSAIEKA 82

Query:   117 KIDYSGFLETLGGSESPGRTWMLIFTAEKKLKSGRYFPVTAVQRFDAAAKRIENGVYLGP 176
             KID S FLETLGG ESPGRTWMLIFTAEKKL  GRYFP+TAVQRFDAA KRIENGVYLGP
Sbjct:    83 KIDPSTFLETLGGPESPGRTWMLIFTAEKKLTKGRYFPLTAVQRFDAAGKRIENGVYLGP 142

Query:   177 IGCLTFEGRFSWKKRMLAFIFERVHIKIGPLKPLEIGFGQKDN-REPSTVSKDPFFVWFY 235
              G LTFEGRFSWK R+LAF+FE++ IKIGPL PLE   G+KD   EPS  +KDPFF+WFY
Sbjct:   143 FGALTFEGRFSWKNRILAFVFEQIRIKIGPLDPLEFSLGKKDAVEEPS--NKDPFFIWFY 200

Query:   236 IDEEIAVARGRAGGTAFWCRCRRVTT 261
             IDEEIAVARGR+GGTAFWCRCRR+ +
Sbjct:   201 IDEEIAVARGRSGGTAFWCRCRRIAS 226


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.135   0.409    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      265       253   0.00083  114 3  11 22  0.44    33
                                                     32  0.47    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  607 (65 KB)
  Total size of DFA:  190 KB (2109 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  20.06u 0.14s 20.20t   Elapsed:  00:00:01
  Total cpu time:  20.06u 0.14s 20.20t   Elapsed:  00:00:01
  Start:  Fri May 10 17:39:20 2013   End:  Fri May 10 17:39:21 2013

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