BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 024650
         (265 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|C4LD54|NQRD_TOLAT Na(+)-translocating NADH-quinone reductase subunit D OS=Tolumonas
           auensis (strain DSM 9187 / TA4) GN=nqrD PE=3 SV=1
          Length = 215

 Score = 36.2 bits (82), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 20/71 (28%), Positives = 31/71 (43%)

Query: 123 FLETLGGSESPGRTWMLIFTAEKKLKSGRYFPVTAVQRFDAAAKRIENGVYLGPIGCLTF 182
           FL+ +G     G   +L+ T  + + SG +F +T  +  +     I NG+ L P      
Sbjct: 131 FLDGIGNGLGYGFILLLVGTIREVIGSGSWFGITLFETVNNGGWYIPNGMLLMPPSAFFL 190

Query: 183 EGRFSWKKRML 193
            G F W  R L
Sbjct: 191 IGLFIWVLRTL 201


>sp|A4VIE0|MURA_PSEU5 UDP-N-acetylglucosamine 1-carboxyvinyltransferase OS=Pseudomonas
           stutzeri (strain A1501) GN=murA PE=3 SV=1
          Length = 421

 Score = 32.3 bits (72), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 32/77 (41%), Gaps = 14/77 (18%)

Query: 103 AAEILSALSVIEKAK-----IDYSGFLETLGGSESPGRTWMLIFTAEKKLKSGRYFPVTA 157
           AA + +  SV+E A      +D + FL  +G   S   T  ++    K+L  GRY     
Sbjct: 175 AAALANGRSVLENAAREPEVVDLANFLNAMGAKVSGAGTDTIVIDGVKRLGGGRY----- 229

Query: 158 VQRFDAAAKRIENGVYL 174
                    RIE G YL
Sbjct: 230 ----SVMPDRIETGTYL 242


>sp|Q2GHB1|BIOB_EHRCR Biotin synthase OS=Ehrlichia chaffeensis (strain Arkansas) GN=bioB
           PE=3 SV=1
          Length = 326

 Score = 31.2 bits (69), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 58/142 (40%), Gaps = 12/142 (8%)

Query: 19  KWGAPNSAQIFVTPSNKLPLKTNATHFPCPKFTNNKVKTRATLGEKDDIAPPTPLLVQE- 77
            W      ++F TP N L L+++ TH     F NN+++  A L  K    P       + 
Sbjct: 10  NWQLDEILELFNTPFNDLILRSHLTHRQF--FNNNEIQLAALLNIKTGGCPENCRYCSQS 67

Query: 78  ---KEQSNREVEESVKILKKAAKTRKVAAAE---ILSALSVIEKAKIDYSGFLETLGGS- 130
              K    +E    V+ +KKA +T K + A+     +A   +    I+Y   +  L  S 
Sbjct: 68  AHYKTDLQKEALLDVENIKKAIQTAKNSGADRFCFAAAWRQLRDKDIEYICNIINLIKSE 127

Query: 131 --ESPGRTWMLIFTAEKKLKSG 150
             ES     M+     KKLK+ 
Sbjct: 128 KLESCASLGMITLDQAKKLKNA 149


>sp|Q84H41|XSC_ALCXX Sulfoacetaldehyde acetyltransferase OS=Alcaligenes xylosoxydans
           xylosoxydans GN=xsc PE=1 SV=3
          Length = 603

 Score = 31.2 bits (69), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 36/148 (24%), Positives = 57/148 (38%), Gaps = 8/148 (5%)

Query: 70  PTPLLVQEKEQSNREVEESVKILKKAAKTRKVAAAEILSALSVIEKAKIDYSGFLETLGG 129
           P P+ V         ++ +V++LK A     +A   ++   +V E  ++      E LG 
Sbjct: 185 PKPMRVDRGHGGEASLQAAVELLKTAKFPVILAGGGVVMGDAVEEAKQL-----AERLGA 239

Query: 130 SESPGRTWMLIFTAEKKLKSG--RYFPVTAVQRFDAAAKR-IENGVYLGPIGCLTFEGRF 186
             + G      F A+  L +G   Y    A  +  A A   I  G  +GP G L   G  
Sbjct: 240 PVATGYLRNDAFPAKHPLWAGPLGYQGSKAAMKLIAQADVVIALGSRMGPFGTLPQHGMD 299

Query: 187 SWKKRMLAFIFERVHIKIGPLKPLEIGF 214
            W K       E  H  +G +K + +G 
Sbjct: 300 YWPKAAKIIQIEADHTNLGLVKKIAVGI 327


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.319    0.134    0.401 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,989,480
Number of Sequences: 539616
Number of extensions: 3826290
Number of successful extensions: 10264
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 10256
Number of HSP's gapped (non-prelim): 22
length of query: 265
length of database: 191,569,459
effective HSP length: 115
effective length of query: 150
effective length of database: 129,513,619
effective search space: 19427042850
effective search space used: 19427042850
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)