Query 024650
Match_columns 265
No_of_seqs 69 out of 71
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 12:02:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024650.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024650hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v8h_A Sulfur oxidation protei 55.0 28 0.00094 27.2 6.0 41 190-237 40-80 (107)
2 2k5e_A Uncharacterized protein 40.5 26 0.00089 25.4 3.5 26 90-115 41-66 (73)
3 4i95_A Putative uncharacterize 39.1 67 0.0023 27.0 6.2 57 125-188 10-68 (142)
4 2oxg_Z SOXZ protein; immunoglo 37.9 28 0.00097 27.2 3.6 40 191-237 42-81 (108)
5 2k53_A A3DK08 protein; NESG, C 29.9 32 0.0011 25.2 2.5 25 91-115 40-64 (76)
6 2xvc_A ESCRT-III, SSO0910; cel 29.0 41 0.0014 24.6 2.8 25 92-116 28-52 (59)
7 4gzv_A Hypothetical protein; A 25.9 1.3E+02 0.0045 25.2 5.8 57 125-188 10-68 (142)
8 2fi0_A Conserved domain protei 24.6 36 0.0012 24.8 2.0 24 89-112 49-72 (81)
9 2a6s_A Toxin YOEB; YEFM, antit 23.8 1E+02 0.0034 21.2 4.2 9 135-143 62-70 (84)
10 1wjt_A Transcription elongatio 21.3 72 0.0025 24.8 3.2 33 82-116 11-43 (103)
11 3k6g_A Telomeric repeat-bindin 21.3 1.3E+02 0.0044 24.4 4.7 34 79-112 4-37 (111)
No 1
>1v8h_A Sulfur oxidation protein SOXZ; lithotrophic sulfur oxidation, unknown function, structural genomics; 1.20A {Thermus thermophilus HB8} SCOP: b.1.18.19
Probab=55.03 E-value=28 Score=27.16 Aligned_cols=41 Identities=20% Similarity=0.228 Sum_probs=33.9
Q ss_pred ceeeeEEeceEEEeecCCcceeecCCCCCCCCCCCCCCCCceEEEEec
Q 024650 190 KRMLAFIFERVHIKIGPLKPLEIGFGQKDNREPSTVSKDPFFVWFYID 237 (265)
Q Consensus 190 k~lLaF~F~~i~lklG~~~l~~i~lg~~~~f~p~~~kk~PFFa~f~vd 237 (265)
+.+=++.-+.+++..++..++...++. .+.+.|||.|-+..
T Consensus 40 ~~iPa~~I~~v~~~~ng~~v~~~~~~~-------~iS~nP~~~F~~~~ 80 (107)
T 1v8h_A 40 KLIPAKYINLVEVYFEGEKVAEARPGP-------STSANPLYAFKFKA 80 (107)
T ss_dssp CBCCCBCEEEEEEEETTEEEEEECCCS-------SCCSSCEEEEEEEC
T ss_pred CcCchHheEEEEEEECCEEEEEEEeCC-------ccccCCeEEEEEec
Confidence 356688999999999999999988877 26789999998744
No 2
>2k5e_A Uncharacterized protein; helix protein, structural genomic, structural genomics, PSI-2, protein structure initiative; NMR {Methanococcus jannaschii}
Probab=40.53 E-value=26 Score=25.40 Aligned_cols=26 Identities=19% Similarity=0.353 Sum_probs=22.0
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHH
Q 024650 90 KILKKAAKTRKVAAAEILSALSVIEK 115 (265)
Q Consensus 90 ~vLk~AA~trkv~~~~V~~ALl~LEK 115 (265)
..|..||+.+.+++++++++|....+
T Consensus 41 ~tL~~Aa~~~gid~~~ll~~Ln~~~~ 66 (73)
T 2k5e_A 41 ESLEQGANAHGLNVEDILRDLNALAL 66 (73)
T ss_dssp SBHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 46888999999999999999886543
No 3
>4i95_A Putative uncharacterized protein; lipocalin-like domain of PF13924 family, structural genomics center for structural genomics, JCSG; HET: MSE; 1.81A {Bacteroides eggerthii} PDB: 4gzv_A
Probab=39.14 E-value=67 Score=27.01 Aligned_cols=57 Identities=21% Similarity=0.258 Sum_probs=33.6
Q ss_pred cccCCCCCCCCceEEEEEeeeecc-cccceeceeEEeeecccceEEeeeEe-ccceeeEEEeeeec
Q 024650 125 ETLGGSESPGRTWMLIFTAEKKLK-SGRYFPVTAVQRFDAAAKRIENGVYL-GPIGCLTFEGRFSW 188 (265)
Q Consensus 125 e~L~G~~~pg~~WrLvFtt~k~l~-~G~Y~P~~avq~fda~~~~IeN~V~L-Gpl~~L~F~G~f~~ 188 (265)
.+|.| .|++||...-..+ .|...|.-..-.++. +|++-|=+-. |.-..++-.|.+..
T Consensus 10 ~~L~G------vWQ~C~y~s~~pd~~g~L~psn~lKIlSd-DgtF~Ni~m~~~~~aiIt~~GtY~~ 68 (142)
T 4i95_A 10 AHLQG------IWQLCHYVSENPDIPGVLKPSNTFKVLSD-DGRIVNFTIRPGTDAIITGYGTYRQ 68 (142)
T ss_dssp CSCCE------EEEEEEEECSSTTSCCEEEEEEEEEEECT-TSEEEEEECCTTSCCEEEEEEEEEE
T ss_pred cccee------EeEEEEEecCCCCCceEeccCccEEEEcC-CCcEEEEEEecCCCcEEEEeEEEEe
Confidence 67899 9999999644333 456666533333333 3677775555 23335666665543
No 4
>2oxg_Z SOXZ protein; immunoglobulin-like beta-sandwich fold, transport protein; 1.40A {Paracoccus denitrificans} PDB: 2ox5_Z 2oxh_Z*
Probab=37.89 E-value=28 Score=27.19 Aligned_cols=40 Identities=15% Similarity=0.291 Sum_probs=32.7
Q ss_pred eeeeEEeceEEEeecCCcceeecCCCCCCCCCCCCCCCCceEEEEec
Q 024650 191 RMLAFIFERVHIKIGPLKPLEIGFGQKDNREPSTVSKDPFFVWFYID 237 (265)
Q Consensus 191 ~lLaF~F~~i~lklG~~~l~~i~lg~~~~f~p~~~kk~PFFa~f~vd 237 (265)
-+=++.-+.+++..++..++...++. .+.+.|||.|-+..
T Consensus 42 ~IPa~~I~~v~~~~ng~~v~~~~~~~-------~iS~NP~~~F~~~~ 81 (108)
T 2oxg_Z 42 LIPRSIINRFTCELNGVNVVDVAIDP-------AVSTNPYFEFDAKV 81 (108)
T ss_dssp BCCCBCEEEEEEEETTEEEEEEEECT-------TBCSSCEEEEEEEE
T ss_pred ccchHheEEEEEEECCEEEEEEEeCC-------ccccCCeEEEEEec
Confidence 46688889999999999999988776 26789999987743
No 5
>2k53_A A3DK08 protein; NESG, CMR9, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium thermocellum atcc 27405}
Probab=29.86 E-value=32 Score=25.19 Aligned_cols=25 Identities=12% Similarity=0.203 Sum_probs=20.8
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHH
Q 024650 91 ILKKAAKTRKVAAAEILSALSVIEK 115 (265)
Q Consensus 91 vLk~AA~trkv~~~~V~~ALl~LEK 115 (265)
.|..||+...+++++++++|..+=.
T Consensus 40 tLeeA~~~hgiD~d~ll~eLn~~i~ 64 (76)
T 2k53_A 40 SIEDACAVHGIDADKLVKELNEYFE 64 (76)
T ss_dssp BHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 4778899999999999999976543
No 6
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=28.96 E-value=41 Score=24.59 Aligned_cols=25 Identities=16% Similarity=0.303 Sum_probs=21.0
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHh
Q 024650 92 LKKAAKTRKVAAAEILSALSVIEKA 116 (265)
Q Consensus 92 Lk~AA~trkv~~~~V~~ALl~LEKa 116 (265)
+...|+.=.|+.++|+.+|+.||.-
T Consensus 28 I~~~a~kygV~kdeV~~~LrrLe~K 52 (59)
T 2xvc_A 28 IEHFSKVYGVEKQEVVKLLEALKNK 52 (59)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 3456777899999999999999874
No 7
>4gzv_A Hypothetical protein; AN eight-stranded beta barrel, lipocalin family, structural joint center for structural genomics, JCSG; 1.95A {Bacteroides ovatus}
Probab=25.91 E-value=1.3e+02 Score=25.17 Aligned_cols=57 Identities=21% Similarity=0.234 Sum_probs=33.1
Q ss_pred cccCCCCCCCCceEEEEEe-eeecccccceeceeEEeeecccceEEeeeEec-cceeeEEEeeeec
Q 024650 125 ETLGGSESPGRTWMLIFTA-EKKLKSGRYFPVTAVQRFDAAAKRIENGVYLG-PIGCLTFEGRFSW 188 (265)
Q Consensus 125 e~L~G~~~pg~~WrLvFtt-~k~l~~G~Y~P~~avq~fda~~~~IeN~V~LG-pl~~L~F~G~f~~ 188 (265)
++|.| -|++||.- ...-..|.+.|.-..-.++++ |++-|=+-.+ .=.-++..|.+.+
T Consensus 10 ~~L~G------vWQ~c~y~~~~~~~~~~l~~s~~~KIlS~D-gtF~N~~m~~~~~aiIt~yGtY~l 68 (142)
T 4gzv_A 10 ADLKG------IWQLCHYVSESPDVPGALKPSNTFKVLSDD-GRIVNFTIIPGADAIITGYGTYKQ 68 (142)
T ss_dssp CCCCE------EEEEEEEEESSTTSCCEEEEEEEEEEECTT-SEEEEEECCTTSCCEEEEEEEEEE
T ss_pred ccceE------EeEEeeEeecCCCCCceEeecCceEEECCC-CcEEEEEEeCCCCcEEEEeEEEEe
Confidence 78899 99999885 333346667776444444443 5666644433 1113566665544
No 8
>2fi0_A Conserved domain protein; structural genomics,streptococcus pneumoniae, PSI, protein S initiative; 2.10A {Streptococcus pneumoniae} SCOP: a.248.1.1
Probab=24.56 E-value=36 Score=24.84 Aligned_cols=24 Identities=21% Similarity=0.228 Sum_probs=21.1
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHH
Q 024650 89 VKILKKAAKTRKVAAAEILSALSV 112 (265)
Q Consensus 89 v~vLk~AA~trkv~~~~V~~ALl~ 112 (265)
..+|+.||+-+.+++++++++|..
T Consensus 49 ~~TL~~aa~~~gid~d~l~~~L~~ 72 (81)
T 2fi0_A 49 KVSLKQGSKLAGTPMDKIVRTLEA 72 (81)
T ss_dssp HCBHHHHHHHHTCCHHHHHHHHHH
T ss_pred cCcHHHHHHHcCCCHHHHHHHHHH
Confidence 567999999999999999998754
No 9
>2a6s_A Toxin YOEB; YEFM, antitoxin, addiction modules, RNAse, inhibitor; 1.77A {Escherichia coli} SCOP: d.298.1.1 PDB: 2a6r_A 2a6q_E
Probab=23.85 E-value=1e+02 Score=21.20 Aligned_cols=9 Identities=11% Similarity=0.398 Sum_probs=6.6
Q ss_pred CceEEEEEe
Q 024650 135 RTWMLIFTA 143 (265)
Q Consensus 135 ~~WrLvFtt 143 (265)
..||++|..
T Consensus 62 ~~yRiiY~i 70 (84)
T 2a6s_A 62 EEHRLVYAV 70 (84)
T ss_dssp SSCEEEEEE
T ss_pred CCeEEEEEE
Confidence 468888864
No 10
>1wjt_A Transcription elongation factor S-II protein 3; four-helix bundle, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.48.3.1
Probab=21.33 E-value=72 Score=24.78 Aligned_cols=33 Identities=18% Similarity=0.216 Sum_probs=26.9
Q ss_pred hHhHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHh
Q 024650 82 NREVEESVKILKKAAKTRKVAAAEILSALSVIEKA 116 (265)
Q Consensus 82 ~~~~~e~v~vLk~AA~trkv~~~~V~~ALl~LEKa 116 (265)
.+++.+-++.|..|+. +.+.+++++.|..|++.
T Consensus 11 e~ev~~i~k~L~k~~~--~~~~~~~l~~L~~L~~~ 43 (103)
T 1wjt_A 11 EEELLRIAKKLEKMVS--RKKTEGALDLLKKLNSC 43 (103)
T ss_dssp HHHHHHHHHHHHHHHH--TTCCSSHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHh--cCCHHHHHHHHHHHhCC
Confidence 5588889999999877 35668899999999874
No 11
>3k6g_A Telomeric repeat-binding factor 2-interacting Pro; helix, chromosomal protein, nucleus, phosphoprotein, telomer cycle, DNA-binding, protein binding; 1.95A {Homo sapiens}
Probab=21.30 E-value=1.3e+02 Score=24.35 Aligned_cols=34 Identities=18% Similarity=0.268 Sum_probs=29.6
Q ss_pred ccchHhHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 024650 79 EQSNREVEESVKILKKAAKTRKVAAAEILSALSV 112 (265)
Q Consensus 79 ~~~~~~~~e~v~vLk~AA~trkv~~~~V~~ALl~ 112 (265)
..+..+++++++.++...+.-+.+-.+|-.||++
T Consensus 4 ~~s~~~vg~~~~~i~~lMeef~~DL~sVTqAlLK 37 (111)
T 3k6g_A 4 KVSQPEVGAAIKIIRQLMEKFNLDLSTVTQAFLK 37 (111)
T ss_dssp -CCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCCCcccHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 3466789999999999999999999999999874
Done!