Query 024650
Match_columns 265
No_of_seqs 69 out of 71
Neff 3.5
Searched_HMMs 13730
Date Mon Mar 25 12:02:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024650.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/024650hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v8ha1 b.1.18.19 (A:2-107) Su 45.7 14 0.001 27.1 4.8 38 191-235 41-78 (106)
2 d1t6sa1 a.4.5.60 (A:1-85) Segr 22.7 42 0.0031 22.8 3.9 37 99-141 34-72 (85)
3 d2fi0a1 a.248.1.1 (A:3-81) Hyp 15.9 30 0.0022 24.2 1.7 27 86-112 44-70 (79)
4 d1jpth1 b.1.1.1 (H:1-117) Immu 15.3 28 0.002 26.1 1.5 22 240-261 94-115 (117)
5 d1wmia1 d.298.1.2 (A:1-88) Hyp 12.4 1.1E+02 0.0079 20.3 3.9 51 93-143 9-70 (88)
6 d1a2yb_ b.1.1.1 (B:) Immunoglo 11.9 40 0.0029 25.1 1.5 23 239-261 92-114 (116)
7 d1z94a1 d.129.3.5 (A:2-144) Hy 10.1 84 0.0061 21.6 2.7 44 100-143 11-57 (143)
8 d2esna1 a.4.5.37 (A:3-91) Prob 9.8 99 0.0072 20.7 2.9 26 91-116 22-47 (89)
9 d1ieha_ b.1.1.1 (A:) Camelid I 9.7 36 0.0026 26.2 0.5 23 239-261 93-115 (135)
10 d1a6sa_ a.61.1.4 (A:) GAG poly 9.1 1.2E+02 0.0087 21.8 3.2 36 87-122 3-42 (87)
No 1
>d1v8ha1 b.1.18.19 (A:2-107) Sulfur oxidation protein SoxZ {Thermus thermophilus [TaxId: 274]}
Probab=45.66 E-value=14 Score=27.12 Aligned_cols=38 Identities=18% Similarity=0.238 Sum_probs=31.9
Q ss_pred eeeeEEeceEEEeecCCcceeecCCCCCCCCCCCCCCCCceEEEE
Q 024650 191 RMLAFIFERVHIKIGPLKPLEIGFGQKDNREPSTVSKDPFFVWFY 235 (265)
Q Consensus 191 ~lLaF~F~~i~lklG~~~l~~i~lg~~~~f~p~~~kk~PFFa~f~ 235 (265)
.+=++.-+++.++..|..+++..++. .+.++|||.|..
T Consensus 41 ~IPa~~I~~v~v~~ng~~v~~a~~~~-------svS~NP~~~F~~ 78 (106)
T d1v8ha1 41 LIPAKYINLVEVYFEGEKVAEARPGP-------STSANPLYAFKF 78 (106)
T ss_dssp BCCCBCEEEEEEEETTEEEEEECCCS-------SCCSSCEEEEEE
T ss_pred EecHHheEEEEEEECCEEEEEEEcCC-------cccCCCeEEEEE
Confidence 35568889999999999999988876 277999999887
No 2
>d1t6sa1 a.4.5.60 (A:1-85) Segregation and condensation protein B, ScpB {Chlorobium tepidum [TaxId: 1097]}
Probab=22.74 E-value=42 Score=22.84 Aligned_cols=37 Identities=14% Similarity=0.328 Sum_probs=28.0
Q ss_pred CCCChHHHHHHHHHHHHhh-cccCcc-ccccCCCCCCCCceEEEE
Q 024650 99 RKVAAAEILSALSVIEKAK-IDYSGF-LETLGGSESPGRTWMLIF 141 (265)
Q Consensus 99 rkv~~~~V~~ALl~LEKa~-~~~s~f-~e~L~G~~~pg~~WrLvF 141 (265)
..+++++|.++|..|.+-= ...+++ +..+.| .|||+-
T Consensus 34 ~~~~~~~i~~~l~~L~~~y~~~~~g~el~~~~~------gy~~~t 72 (85)
T d1t6sa1 34 HKFTPSELQEAVDELNRDYEATGRTFRIHAIAG------GYRFLT 72 (85)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHTCSEEEEEETT------EEEEEE
T ss_pred cCCCHHHHHHHHHHHHHHHhcCCCcEEEEEECC------EEEEEE
Confidence 3578889999998887764 445775 678888 899874
No 3
>d2fi0a1 a.248.1.1 (A:3-81) Hypothetical protein SPr0485/SP0561 {Streptococcus pneumoniae [TaxId: 1313]}
Probab=15.93 E-value=30 Score=24.24 Aligned_cols=27 Identities=19% Similarity=0.167 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHH
Q 024650 86 EESVKILKKAAKTRKVAAAEILSALSV 112 (265)
Q Consensus 86 ~e~v~vLk~AA~trkv~~~~V~~ALl~ 112 (265)
..-+-+|+.||+.+.++.+.+.++|.+
T Consensus 44 ~gr~~TL~~aa~~~gidl~~~~~~L~~ 70 (79)
T d2fi0a1 44 VGRKVSLKQGSKLAGTPMDKIVRTLEA 70 (79)
T ss_dssp HHHHCBHHHHHHHHTCCHHHHHHHHHH
T ss_pred HhhHccHHHHHHHcCCCHHHHHHHHHH
Confidence 356678999999999999999998754
No 4
>d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}
Probab=15.28 E-value=28 Score=26.12 Aligned_cols=22 Identities=27% Similarity=0.317 Sum_probs=18.0
Q ss_pred eEEeecCCCeeEeeeecCcccc
Q 024650 240 IAVARGRAGGTAFWCRCRRVTT 261 (265)
Q Consensus 240 iiaARGRGGGLALW~R~~~~~~ 261 (265)
.-|||++++++..|..-..|+-
T Consensus 94 YYCAr~~~~~fd~WGqGT~VTV 115 (117)
T d1jpth1 94 YYCARDTAAYFDYWGQGTLVTV 115 (117)
T ss_dssp EEEEEECSSCEEEECCCEEEEE
T ss_pred EEEeecCCCccceeCcCEEEEE
Confidence 4589999999999987766653
No 5
>d1wmia1 d.298.1.2 (A:1-88) Hypothetical protein PHS013 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=12.39 E-value=1.1e+02 Score=20.27 Aligned_cols=51 Identities=14% Similarity=0.169 Sum_probs=27.8
Q ss_pred HHHHhc-CCCChHHHHHHHHHHHHhhcccCc----cccccCCCCCCC------CceEEEEEe
Q 024650 93 KKAAKT-RKVAAAEILSALSVIEKAKIDYSG----FLETLGGSESPG------RTWMLIFTA 143 (265)
Q Consensus 93 k~AA~t-rkv~~~~V~~ALl~LEKa~~~~s~----f~e~L~G~~~pg------~~WrLvFtt 143 (265)
++|.+. ++.|...--.-+..||....+|.. -.+.|.|....+ +.||++|.-
T Consensus 9 ~~A~k~l~kL~~~~~~~I~~~l~~L~~~P~~~~~~~~~kL~G~~~~~~~rlRvG~YRiiy~i 70 (88)
T d1wmia1 9 KQVVKALQSLPKAHYRRFLEFRDILEYEPVPREKFDVIKLEGTGDLDLYRARLGDYRVIYSV 70 (88)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHHHTTCSCCHHHHTCEEEECCSSEEEEEEECSSSEEEEEE
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHhCcCcCCccccccccCCCCCCEEEEEeCCcEEEEEE
Confidence 345555 677776666666666666655532 135566633221 256666653
No 6
>d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]}
Probab=11.92 E-value=40 Score=25.12 Aligned_cols=23 Identities=22% Similarity=0.325 Sum_probs=18.3
Q ss_pred ceEEeecCCCeeEeeeecCcccc
Q 024650 239 EIAVARGRAGGTAFWCRCRRVTT 261 (265)
Q Consensus 239 ~iiaARGRGGGLALW~R~~~~~~ 261 (265)
-.-|||+.|+.+..|.+-..|+-
T Consensus 92 vYYCAr~~~~~~d~WGqGT~vTV 114 (116)
T d1a2yb_ 92 RYYCARERDYRLDYWGQGTTLTV 114 (116)
T ss_dssp EEEEEEESSSSEEEECCCEEEEE
T ss_pred EEEEEEeCCcccceeCCCEEEEE
Confidence 34589999999999988776653
No 7
>d1z94a1 d.129.3.5 (A:2-144) Hypothetical protein CV1439 {Chromobacterium violaceum [TaxId: 536]}
Probab=10.05 E-value=84 Score=21.63 Aligned_cols=44 Identities=16% Similarity=0.162 Sum_probs=30.8
Q ss_pred CCChHHHHHHHHHHHHhhc--ccCcc-ccccCCCCCCCCceEEEEEe
Q 024650 100 KVAAAEILSALSVIEKAKI--DYSGF-LETLGGSESPGRTWMLIFTA 143 (265)
Q Consensus 100 kv~~~~V~~ALl~LEKa~~--~~s~f-~e~L~G~~~pg~~WrLvFtt 143 (265)
+.|+++|.+||..-|...+ -+.++ .....+.-.||+.|++.+..
T Consensus 11 ~ap~e~Vw~a~Tdp~~~~~W~~p~~~~~~~~~~d~~~Gg~~~~~~~~ 57 (143)
T d1z94a1 11 SAPPERVYRAFLDPLALAKWLPPEGFVCKVLEHDARVGGAYKMEFLA 57 (143)
T ss_dssp SSCHHHHHHHTTCHHHHHHHSSCTTEEEEEEEECCSTTCEEEEEEEE
T ss_pred CCCHHHHHHHhcCHHHHhhhhCCCCccceeEeeccccceeEEEEEee
Confidence 5799999999999888763 44443 23334445578899987764
No 8
>d2esna1 a.4.5.37 (A:3-91) Probable LysR-type transcriptional regulator PA0477 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=9.79 E-value=99 Score=20.70 Aligned_cols=26 Identities=19% Similarity=0.215 Sum_probs=23.5
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHh
Q 024650 91 ILKKAAKTRKVAAAEILSALSVIEKA 116 (265)
Q Consensus 91 vLk~AA~trkv~~~~V~~ALl~LEKa 116 (265)
-+.+||+.--+++..|-..|..||+.
T Consensus 22 s~t~AA~~l~isq~avs~~l~~lE~~ 47 (89)
T d2esna1 22 NVGTAASELAISASAFSHALGRLRQG 47 (89)
T ss_dssp SHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCcHhhHHHHHHHhc
Confidence 36788999999999999999999997
No 9
>d1ieha_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}
Probab=9.72 E-value=36 Score=26.20 Aligned_cols=23 Identities=22% Similarity=0.273 Sum_probs=18.4
Q ss_pred ceEEeecCCCeeEeeeecCcccc
Q 024650 239 EIAVARGRAGGTAFWCRCRRVTT 261 (265)
Q Consensus 239 ~iiaARGRGGGLALW~R~~~~~~ 261 (265)
-.-|||..||++..|.+-..|+-
T Consensus 93 vYYCAr~~~~~~d~WGqGT~VTV 115 (135)
T d1ieha_ 93 VYYCAKYSGGALDAWGQGTQVTV 115 (135)
T ss_dssp EEEEEEBSSSSBCCCSCCEEEEE
T ss_pred eeEEEEecCCccceeCCCEEEEE
Confidence 44699999999999987766653
No 10
>d1a6sa_ a.61.1.4 (A:) GAG polyprotein M-domain {Rous sarcoma virus [TaxId: 11886]}
Probab=9.07 E-value=1.2e+02 Score=21.77 Aligned_cols=36 Identities=28% Similarity=0.333 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhc----CCCChHHHHHHHHHHHHhhcccCc
Q 024650 87 ESVKILKKAAKT----RKVAAAEILSALSVIEKAKIDYSG 122 (265)
Q Consensus 87 e~v~vLk~AA~t----rkv~~~~V~~ALl~LEKa~~~~s~ 122 (265)
.-.+||+.|+++ ..++.-||-+-|..|++-..-+++
T Consensus 3 ~VikVl~~~ck~~~gk~spskKei~a~ls~L~~eG~l~sP 42 (87)
T d1a6sa_ 3 AVIKVISSACKTYCGKTSPSKKEIGAMLSLLQKEGLLMSP 42 (87)
T ss_dssp HHHHHHHHHHHHHHTTTSSCSSHHHHHHHTGGGTTCTTCG
T ss_pred hHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHccCcCCc
Confidence 446899999998 356667899999999998754443
Done!