Query 024653
Match_columns 264
No_of_seqs 204 out of 738
Neff 4.0
Searched_HMMs 46136
Date Fri Mar 29 06:22:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024653.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024653hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1318 Helix loop helix trans 99.5 1E-13 2.3E-18 134.2 7.7 96 149-254 232-330 (411)
2 cd00083 HLH Helix-loop-helix d 99.4 1.4E-13 3.1E-18 97.1 4.2 54 151-204 5-60 (60)
3 smart00353 HLH helix loop heli 99.3 1.3E-12 2.8E-17 90.9 5.3 50 155-204 1-52 (53)
4 PF00010 HLH: Helix-loop-helix 99.3 1.1E-12 2.4E-17 92.7 4.5 49 152-200 3-55 (55)
5 KOG1319 bHLHZip transcription 99.1 3.7E-11 7.9E-16 107.2 3.3 85 153-237 65-156 (229)
6 KOG4304 Transcriptional repres 98.3 1.6E-07 3.4E-12 86.4 1.6 53 153-205 35-94 (250)
7 KOG2588 Predicted DNA-binding 98.3 4.6E-07 9.9E-12 95.4 4.7 65 148-212 274-338 (953)
8 KOG3561 Aryl-hydrocarbon recep 98.2 1E-06 2.2E-11 92.0 4.4 52 151-202 21-75 (803)
9 KOG0561 bHLH transcription fac 97.8 1.6E-05 3.4E-10 75.8 3.0 51 153-204 63-115 (373)
10 KOG2483 Upstream transcription 97.7 6.5E-05 1.4E-09 68.8 5.9 58 152-209 61-120 (232)
11 PLN03217 transcription factor 97.2 0.00061 1.3E-08 54.5 5.3 53 160-213 17-75 (93)
12 KOG4029 Transcription factor H 97.1 0.00048 1E-08 61.7 4.1 58 153-210 112-172 (228)
13 KOG3960 Myogenic helix-loop-he 97.0 0.00098 2.1E-08 62.3 5.3 56 153-208 121-177 (284)
14 KOG3910 Helix loop helix trans 96.3 0.0064 1.4E-07 61.5 5.8 56 152-207 528-586 (632)
15 KOG4447 Transcription factor T 87.8 0.27 5.9E-06 43.4 1.4 48 153-201 81-130 (173)
16 KOG3558 Hypoxia-inducible fact 85.1 0.78 1.7E-05 48.4 3.3 43 155-197 51-96 (768)
17 KOG3560 Aryl-hydrocarbon recep 76.0 2.3 4.9E-05 44.3 3.0 40 158-198 33-76 (712)
18 KOG3559 Transcriptional regula 74.7 2.8 6E-05 42.5 3.1 44 156-199 7-53 (598)
19 PF13334 DUF4094: Domain of un 64.3 12 0.00025 30.2 4.1 26 189-214 68-93 (95)
20 KOG3898 Transcription factor N 63.8 11 0.00024 35.0 4.4 48 154-201 76-125 (254)
21 KOG4395 Transcription factor A 40.4 39 0.00084 32.4 4.0 52 153-204 177-230 (285)
22 COG3074 Uncharacterized protei 35.4 52 0.0011 26.0 3.4 26 188-213 12-37 (79)
23 KOG0139 Short-chain acyl-CoA d 31.4 45 0.00097 33.3 3.0 28 187-214 287-327 (398)
24 TIGR00986 3a0801s05tom22 mitoc 26.9 37 0.0008 29.7 1.5 39 162-201 48-86 (145)
25 PRK15422 septal ring assembly 25.0 1E+02 0.0022 24.6 3.4 26 188-213 12-37 (79)
26 PF06005 DUF904: Protein of un 21.8 1.4E+02 0.0029 23.0 3.6 26 189-214 13-38 (72)
27 PRK11020 hypothetical protein; 21.0 86 0.0019 26.6 2.5 44 163-207 8-51 (118)
No 1
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=99.46 E-value=1e-13 Score=134.19 Aligned_cols=96 Identities=21% Similarity=0.367 Sum_probs=80.3
Q ss_pred CcCCccchHHHhhhhhhhHHHHHhhhcCCCCCc---CCChhchHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCCchh
Q 024653 149 QATDSHSLAERVRRGKINERLRCLQDIVPGCYK---TMGMTMMLDEIINYVQSLQNQVEFLSMKLTAASTFYDFNSESDA 225 (264)
Q Consensus 149 ~a~~sHs~aERrRRekIneri~~Lr~LVP~~~K---k~dKAsIL~eAI~YIK~LQ~QV~~Ls~~l~a~~~~~~~~~~~~~ 225 (264)
++++.|+++|||||++||++|++|..|||.|.. +++|.+||..+.+||+.||+..+...+.. ...+.
T Consensus 232 ~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q~~~E~~----------~rqk~ 301 (411)
T KOG1318|consen 232 RKRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQRARELE----------NRQKK 301 (411)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHHHHHHHH----------hhhhH
Confidence 445689999999999999999999999999942 26899999999999999999888665333 34667
Q ss_pred HHHHHHHhhhhhHHHHHHHHhcCCccccC
Q 024653 226 VETMQKAKAYKAKEMERLMKEGNFACSSS 254 (264)
Q Consensus 226 ~e~~q~a~~~~~~e~e~~~r~~gl~~~~~ 254 (264)
++...+.++.+++|++..++.+|+.+-.+
T Consensus 302 le~~n~~L~~rieeLk~~~~~~~~~~~~~ 330 (411)
T KOG1318|consen 302 LESTNQELALRIEELKSEAGRHGLQVEPS 330 (411)
T ss_pred HHhHHHHHHHHHHHHHHHHHHhcCccccc
Confidence 77778889999999999999998865444
No 2
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and
Probab=99.42 E-value=1.4e-13 Score=97.09 Aligned_cols=54 Identities=30% Similarity=0.578 Sum_probs=49.2
Q ss_pred CCccchHHHhhhhhhhHHHHHhhhcCCCC--CcCCChhchHHHHHHHHHHHHHHHH
Q 024653 151 TDSHSLAERVRRGKINERLRCLQDIVPGC--YKTMGMTMMLDEIINYVQSLQNQVE 204 (264)
Q Consensus 151 ~~sHs~aERrRRekIneri~~Lr~LVP~~--~Kk~dKAsIL~eAI~YIK~LQ~QV~ 204 (264)
...|+..||+||++||+.|..|+.+||++ ..++||++||+.||+||+.|+.+++
T Consensus 5 r~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~~~~ 60 (60)
T cd00083 5 REAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELLQ 60 (60)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 34799999999999999999999999999 3458999999999999999998863
No 3
>smart00353 HLH helix loop helix domain.
Probab=99.35 E-value=1.3e-12 Score=90.88 Aligned_cols=50 Identities=34% Similarity=0.529 Sum_probs=44.8
Q ss_pred chHHHhhhhhhhHHHHHhhhcCCCC--CcCCChhchHHHHHHHHHHHHHHHH
Q 024653 155 SLAERVRRGKINERLRCLQDIVPGC--YKTMGMTMMLDEIINYVQSLQNQVE 204 (264)
Q Consensus 155 s~aERrRRekIneri~~Lr~LVP~~--~Kk~dKAsIL~eAI~YIK~LQ~QV~ 204 (264)
+..||+||++||+.|..|+.+||.+ ..+++|++||++||+||+.|+.+++
T Consensus 1 n~~Er~RR~~~n~~~~~L~~lip~~~~~~k~~k~~iL~~ai~yi~~L~~~~~ 52 (53)
T smart00353 1 NARERRRRRKINEAFDELRSLLPTLPNNKKLSKAEILRLAIEYIKSLQEELQ 52 (53)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 4689999999999999999999964 2337999999999999999999886
No 4
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt).; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....
Probab=99.34 E-value=1.1e-12 Score=92.72 Aligned_cols=49 Identities=31% Similarity=0.664 Sum_probs=45.2
Q ss_pred CccchHHHhhhhhhhHHHHHhhhcCCCC----CcCCChhchHHHHHHHHHHHH
Q 024653 152 DSHSLAERVRRGKINERLRCLQDIVPGC----YKTMGMTMMLDEIINYVQSLQ 200 (264)
Q Consensus 152 ~sHs~aERrRRekIneri~~Lr~LVP~~----~Kk~dKAsIL~eAI~YIK~LQ 200 (264)
..|+..||+||++||+.|..|+.+||.+ ..+++|++||+.||+||+.||
T Consensus 3 ~~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq 55 (55)
T PF00010_consen 3 QKHNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ 55 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence 3699999999999999999999999998 344899999999999999997
No 5
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]
Probab=99.11 E-value=3.7e-11 Score=107.16 Aligned_cols=85 Identities=24% Similarity=0.355 Sum_probs=65.8
Q ss_pred ccchHHHhhhhhhhHHHHHhhhcCCCCCcC------CChhchHHHHHHHHHHHHHHHHHHHhhhhhcc-cccccCCCchh
Q 024653 153 SHSLAERVRRGKINERLRCLQDIVPGCYKT------MGMTMMLDEIINYVQSLQNQVEFLSMKLTAAS-TFYDFNSESDA 225 (264)
Q Consensus 153 sHs~aERrRRekIneri~~Lr~LVP~~~Kk------~dKAsIL~eAI~YIK~LQ~QV~~Ls~~l~a~~-~~~~~~~~~~~ 225 (264)
.|..+||+||+.|+..+..|+.|||.|... +.||.||..+|+||.+|..++.+-+.++.++. ..-.+..-...
T Consensus 65 aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~kqe~e~s~L~k~vtAL~iIk~~ 144 (229)
T KOG1319|consen 65 AHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKKQEEEVSTLRKDVTALKIIKVN 144 (229)
T ss_pred HHHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 699999999999999999999999976532 57999999999999999998888887776654 22233333456
Q ss_pred HHHHHHHhhhhh
Q 024653 226 VETMQKAKAYKA 237 (264)
Q Consensus 226 ~e~~q~a~~~~~ 237 (264)
+|.|..+..+.+
T Consensus 145 YEqM~~~~qdnp 156 (229)
T KOG1319|consen 145 YEQMVKAHQDNP 156 (229)
T ss_pred HHHHHHhcccCC
Confidence 666666555444
No 6
>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription]
Probab=98.34 E-value=1.6e-07 Score=86.37 Aligned_cols=53 Identities=28% Similarity=0.451 Sum_probs=46.8
Q ss_pred ccchHHHhhhhhhhHHHHHhhhcCCCCCcC-------CChhchHHHHHHHHHHHHHHHHH
Q 024653 153 SHSLAERVRRGKINERLRCLQDIVPGCYKT-------MGMTMMLDEIINYVQSLQNQVEF 205 (264)
Q Consensus 153 sHs~aERrRRekIneri~~Lr~LVP~~~Kk-------~dKAsIL~eAI~YIK~LQ~QV~~ 205 (264)
.|-+.||+||.|||+-|..|++|||.+-++ ++||.||+-+++|++.||.+...
T Consensus 35 ~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~~~ 94 (250)
T KOG4304|consen 35 RKPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQQA 94 (250)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhccccc
Confidence 578999999999999999999999965443 68999999999999999986554
No 7
>KOG2588 consensus Predicted DNA-binding protein [Transcription]
Probab=98.32 E-value=4.6e-07 Score=95.35 Aligned_cols=65 Identities=26% Similarity=0.509 Sum_probs=58.4
Q ss_pred CCcCCccchHHHhhhhhhhHHHHHhhhcCCCCCcCCChhchHHHHHHHHHHHHHHHHHHHhhhhh
Q 024653 148 GQATDSHSLAERVRRGKINERLRCLQDIVPGCYKTMGMTMMLDEIINYVQSLQNQVEFLSMKLTA 212 (264)
Q Consensus 148 g~a~~sHs~aERrRRekIneri~~Lr~LVP~~~Kk~dKAsIL~eAI~YIK~LQ~QV~~Ls~~l~a 212 (264)
|..+.+||++|||.|-.|||||..|+++|||..-++.|..+|..||+||++||..-+.+....+.
T Consensus 274 ~~kRtAHN~IEKRYRsSINDKI~eLk~lV~g~~aKl~kSavLr~ai~~i~dl~~~nq~lk~~~~~ 338 (953)
T KOG2588|consen 274 GEKRTAHNIIEKRYRSSINDKIIELKDLVPGTEAKLNKSAVLRKAIDYIEDLQGYNQKLKLENAS 338 (953)
T ss_pred CcccchhhHHHHHhhcchhHHHHHHHHhcCccHhhhhhhhhHHHHHHHHHHhhccccccchhhhh
Confidence 46678999999999999999999999999998877899999999999999999988877655444
No 8
>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription]
Probab=98.22 E-value=1e-06 Score=91.96 Aligned_cols=52 Identities=19% Similarity=0.328 Sum_probs=48.5
Q ss_pred CCccchHHHhhhhhhhHHHHHhhhcCCCCC---cCCChhchHHHHHHHHHHHHHH
Q 024653 151 TDSHSLAERVRRGKINERLRCLQDIVPGCY---KTMGMTMMLDEIINYVQSLQNQ 202 (264)
Q Consensus 151 ~~sHs~aERrRRekIneri~~Lr~LVP~~~---Kk~dKAsIL~eAI~YIK~LQ~Q 202 (264)
+++|+.+|||||+++|.-|.+|.+|||.|. .|+||-+||.+||+.||.++.+
T Consensus 21 Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~ 75 (803)
T KOG3561|consen 21 RENRSEIEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQ 75 (803)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhh
Confidence 458999999999999999999999999998 6689999999999999998875
No 9
>KOG0561 consensus bHLH transcription factor [Transcription]
Probab=97.77 E-value=1.6e-05 Score=75.79 Aligned_cols=51 Identities=22% Similarity=0.387 Sum_probs=44.4
Q ss_pred ccchHHHhhhhhhhHHHHHhhhcCCC--CCcCCChhchHHHHHHHHHHHHHHHH
Q 024653 153 SHSLAERVRRGKINERLRCLQDIVPG--CYKTMGMTMMLDEIINYVQSLQNQVE 204 (264)
Q Consensus 153 sHs~aERrRRekIneri~~Lr~LVP~--~~Kk~dKAsIL~eAI~YIK~LQ~QV~ 204 (264)
--+-.||||=.-||-.|..||.|+|. +.| +.||.||+.+.+||..|..+.-
T Consensus 63 IANsNERRRMQSINAGFqsLr~LlPr~eGEK-LSKAAILQQTa~yI~~Le~~Kt 115 (373)
T KOG0561|consen 63 IANSNERRRMQSINAGFQSLRALLPRKEGEK-LSKAAILQQTADYIHQLEGHKT 115 (373)
T ss_pred hhcchHHHHHHhhhHHHHHHHHhcCcccchh-hHHHHHHHHHHHHHHHHHhccc
Confidence 34567999999999999999999996 445 7999999999999999987543
No 10
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=97.70 E-value=6.5e-05 Score=68.80 Aligned_cols=58 Identities=22% Similarity=0.316 Sum_probs=48.7
Q ss_pred CccchHHHhhhhhhhHHHHHhhhcCCCCCcCC--ChhchHHHHHHHHHHHHHHHHHHHhh
Q 024653 152 DSHSLAERVRRGKINERLRCLQDIVPGCYKTM--GMTMMLDEIINYVQSLQNQVEFLSMK 209 (264)
Q Consensus 152 ~sHs~aERrRRekIneri~~Lr~LVP~~~Kk~--dKAsIL~eAI~YIK~LQ~QV~~Ls~~ 209 (264)
..|+.-||+||..|.+.|..|+.+||...... +.++||+.|+.||+.|+.+.......
T Consensus 61 ~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~~~~~~ 120 (232)
T KOG2483|consen 61 AHHNALEKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSATQQQD 120 (232)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHHHHHHH
Confidence 46999999999999999999999999755322 25899999999999999877665533
No 11
>PLN03217 transcription factor ATBS1; Provisional
Probab=97.25 E-value=0.00061 Score=54.55 Aligned_cols=53 Identities=26% Similarity=0.463 Sum_probs=44.6
Q ss_pred hhhhhhhHHHHHhhhcCCCC------CcCCChhchHHHHHHHHHHHHHHHHHHHhhhhhc
Q 024653 160 VRRGKINERLRCLQDIVPGC------YKTMGMTMMLDEIINYVQSLQNQVEFLSMKLTAA 213 (264)
Q Consensus 160 rRRekIneri~~Lr~LVP~~------~Kk~dKAsIL~eAI~YIK~LQ~QV~~Ls~~l~a~ 213 (264)
---+.|+|-+..||+|+|.. .+ ...+-||+|+-.||+.|+.+|..|++.|..+
T Consensus 17 isddqi~dLvsKLq~llPe~r~~r~s~k-~saskvLqEtC~YIrsLhrEvDdLSerLs~L 75 (93)
T PLN03217 17 ISEDQINDLIIKLQQLLPELRDSRRSDK-VSAARVLQDTCNYIRNLHREVDDLSERLSEL 75 (93)
T ss_pred CCHHHHHHHHHHHHHHChHHHhhhcccc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33468999999999999953 33 4678899999999999999999999887654
No 12
>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription]
Probab=97.12 E-value=0.00048 Score=61.67 Aligned_cols=58 Identities=19% Similarity=0.249 Sum_probs=50.4
Q ss_pred ccchHHHhhhhhhhHHHHHhhhcCCC--C-CcCCChhchHHHHHHHHHHHHHHHHHHHhhh
Q 024653 153 SHSLAERVRRGKINERLRCLQDIVPG--C-YKTMGMTMMLDEIINYVQSLQNQVEFLSMKL 210 (264)
Q Consensus 153 sHs~aERrRRekIneri~~Lr~LVP~--~-~Kk~dKAsIL~eAI~YIK~LQ~QV~~Ls~~l 210 (264)
.++..||.|=.-+|..|..||.+||. . +|++.|..+|..||.||++|+.-++.-+..+
T Consensus 112 ~~n~RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~~~~~~~ 172 (228)
T KOG4029|consen 112 ARNARERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLATQEAPL 172 (228)
T ss_pred hhhhhhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhcccccCC
Confidence 46777999999999999999999995 3 6678999999999999999999887765443
No 13
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=97.03 E-value=0.00098 Score=62.31 Aligned_cols=56 Identities=21% Similarity=0.301 Sum_probs=47.9
Q ss_pred ccchHHHhhhhhhhHHHHHhhh-cCCCCCcCCChhchHHHHHHHHHHHHHHHHHHHh
Q 024653 153 SHSLAERVRRGKINERLRCLQD-IVPGCYKTMGMTMMLDEIINYVQSLQNQVEFLSM 208 (264)
Q Consensus 153 sHs~aERrRRekIneri~~Lr~-LVP~~~Kk~dKAsIL~eAI~YIK~LQ~QV~~Ls~ 208 (264)
+-.+-||||=.|+||-|.+|+. -+++.+..+-|..||..||+||..||.=++++..
T Consensus 121 AATMRERRRLkKVNEAFE~LKRrT~~NPNQRLPKVEILRsAI~YIE~Lq~LL~~~~~ 177 (284)
T KOG3960|consen 121 AATMRERRRLKKVNEAFETLKRRTSSNPNQRLPKVEILRSAIRYIERLQALLQEQDQ 177 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCccccccHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3457899999999999999964 5667666678999999999999999998887763
No 14
>KOG3910 consensus Helix loop helix transcription factor [Transcription]
Probab=96.33 E-value=0.0064 Score=61.53 Aligned_cols=56 Identities=23% Similarity=0.230 Sum_probs=47.2
Q ss_pred CccchHHHhhhhhhhHHHHHhhhcCCC---CCcCCChhchHHHHHHHHHHHHHHHHHHH
Q 024653 152 DSHSLAERVRRGKINERLRCLQDIVPG---CYKTMGMTMMLDEIINYVQSLQNQVEFLS 207 (264)
Q Consensus 152 ~sHs~aERrRRekIneri~~Lr~LVP~---~~Kk~dKAsIL~eAI~YIK~LQ~QV~~Ls 207 (264)
...+..||.|=..|||.|++|.++.-- ..|.--|-.||..||.-|-.|++||.+-.
T Consensus 528 ~aNNARERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVRERN 586 (632)
T KOG3910|consen 528 MANNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVRERN 586 (632)
T ss_pred hhhhhhhheehhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHHHcc
Confidence 357889999999999999999998652 33334588999999999999999999754
No 15
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=87.84 E-value=0.27 Score=43.43 Aligned_cols=48 Identities=25% Similarity=0.376 Sum_probs=42.1
Q ss_pred ccchHHHhhhhhhhHHHHHhhhcCCC--CCcCCChhchHHHHHHHHHHHHH
Q 024653 153 SHSLAERVRRGKINERLRCLQDIVPG--CYKTMGMTMMLDEIINYVQSLQN 201 (264)
Q Consensus 153 sHs~aERrRRekIneri~~Lr~LVP~--~~Kk~dKAsIL~eAI~YIK~LQ~ 201 (264)
-|++-||+|-..+|+.|.+||.++|. .+| ..|---|.-|-.||-+|=.
T Consensus 81 ~anvrerqRtqsLn~AF~~lr~iiptlPsdk-lSkiqtLklA~ryidfl~~ 130 (173)
T KOG4447|consen 81 MANVRERQRTQSLNEAFAALRKIIPTLPSDK-LSKIQTLKLAARYIDFLYQ 130 (173)
T ss_pred HHHHHHHHhhhhHHHHHHHHHhhcCCCCccc-cccccchhhcccCCchhhh
Confidence 49999999999999999999999995 456 5888889999999988854
No 16
>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription]
Probab=85.07 E-value=0.78 Score=48.44 Aligned_cols=43 Identities=26% Similarity=0.324 Sum_probs=36.8
Q ss_pred chHHHhhhhhhhHHHHHhhhcCCCCCc---CCChhchHHHHHHHHH
Q 024653 155 SLAERVRRGKINERLRCLQDIVPGCYK---TMGMTMMLDEIINYVQ 197 (264)
Q Consensus 155 s~aERrRRekIneri~~Lr~LVP~~~K---k~dKAsIL~eAI~YIK 197 (264)
.-|.|.||.|=|+-|.+|..+||-... .+|||+|+.-||-|+|
T Consensus 51 RdAARsRRsKEn~~FyeLa~~lPlp~aisshLDkaSimRLtISyLR 96 (768)
T KOG3558|consen 51 RDAARSRRSKENEEFYELAKLLPLPAAISSHLDKASIMRLTISYLR 96 (768)
T ss_pred hhhhhhhcccchHHHHHHHHhCCCcchhhhhhhhHHHHHHHHHHHH
Confidence 346899999999999999999994332 2799999999999986
No 17
>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription]
Probab=76.02 E-value=2.3 Score=44.30 Aligned_cols=40 Identities=20% Similarity=0.364 Sum_probs=34.9
Q ss_pred HHhhhhhhhHHHHHhhhcCCC----CCcCCChhchHHHHHHHHHH
Q 024653 158 ERVRRGKINERLRCLQDIVPG----CYKTMGMTMMLDEIINYVQS 198 (264)
Q Consensus 158 ERrRRekIneri~~Lr~LVP~----~~Kk~dKAsIL~eAI~YIK~ 198 (264)
-+|-|+|+|-.+..|..|+|- ..| +||-+||.-++.|++-
T Consensus 33 SKRHRdRLNaELD~lAsLLPfpqdiisK-LDkLSVLRLSVSyLr~ 76 (712)
T KOG3560|consen 33 SKRHRDRLNAELDHLASLLPFPQDIISK-LDKLSVLRLSVSYLRV 76 (712)
T ss_pred chhHHHHhhhHHHHHHHhcCCCHHHHhh-hhhhhhhhhhHHHHHH
Confidence 467899999999999999994 456 6999999999999863
No 18
>KOG3559 consensus Transcriptional regulator SIM1 [Transcription]
Probab=74.66 E-value=2.8 Score=42.47 Aligned_cols=44 Identities=20% Similarity=0.250 Sum_probs=37.3
Q ss_pred hHHHhhhhhhhHHHHHhhhcCCCCC---cCCChhchHHHHHHHHHHH
Q 024653 156 LAERVRRGKINERLRCLQDIVPGCY---KTMGMTMMLDEIINYVQSL 199 (264)
Q Consensus 156 ~aERrRRekIneri~~Lr~LVP~~~---Kk~dKAsIL~eAI~YIK~L 199 (264)
-+.|.||++=|-.|.+|..|+|-.. ...||++|+.-+..|||--
T Consensus 7 naA~tRRekEN~EF~eLAklLPLa~AItsQlDKasiiRLtTsYlKmr 53 (598)
T KOG3559|consen 7 NAARTRREKENYEFYELAKLLPLASAITSQLDKASIIRLTTSYLKMR 53 (598)
T ss_pred hHHHHHHHhhcchHHHHHhhccchhhhhhccchhhhhhHHHHHHHHH
Confidence 4578999999999999999999533 3379999999999999853
No 19
>PF13334 DUF4094: Domain of unknown function (DUF4094)
Probab=64.31 E-value=12 Score=30.16 Aligned_cols=26 Identities=31% Similarity=0.418 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcc
Q 024653 189 LDEIINYVQSLQNQVEFLSMKLTAAS 214 (264)
Q Consensus 189 L~eAI~YIK~LQ~QV~~Ls~~l~a~~ 214 (264)
+.++-+=|+.|.+.|..|+|+|+++.
T Consensus 68 V~kTh~aIq~LdKtIS~LEMELAaAR 93 (95)
T PF13334_consen 68 VSKTHEAIQSLDKTISSLEMELAAAR 93 (95)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36677778899999999999999864
No 20
>KOG3898 consensus Transcription factor NeuroD and related HTH proteins [Transcription]
Probab=63.75 E-value=11 Score=35.03 Aligned_cols=48 Identities=23% Similarity=0.406 Sum_probs=38.9
Q ss_pred cchHHHhhhhhhhHHHHHhhhcCCCCC--cCCChhchHHHHHHHHHHHHH
Q 024653 154 HSLAERVRRGKINERLRCLQDIVPGCY--KTMGMTMMLDEIINYVQSLQN 201 (264)
Q Consensus 154 Hs~aERrRRekIneri~~Lr~LVP~~~--Kk~dKAsIL~eAI~YIK~LQ~ 201 (264)
-+.-||.|=-.+|+-+..||.+||... .++.|.-.|.-|-+||..|+.
T Consensus 76 aNaRER~RMH~LNdAld~LReviP~~~~~~klskIetl~~a~~yi~als~ 125 (254)
T KOG3898|consen 76 ANARERTRMHDLNDALDALREVIPHGLHPPKLSKIETLRLAANYIAALSE 125 (254)
T ss_pred ccchhhccccchhHHHHHhHhhccCcCCCCCCCcchhHHhhhcchhhhcc
Confidence 345688888899999999999999422 226888899999999998875
No 21
>KOG4395 consensus Transcription factor Atonal, contains HTH domain [Transcription]
Probab=40.35 E-value=39 Score=32.35 Aligned_cols=52 Identities=21% Similarity=0.260 Sum_probs=43.2
Q ss_pred ccchHHHhhhhhhhHHHHHhhhcCCCCC--cCCChhchHHHHHHHHHHHHHHHH
Q 024653 153 SHSLAERVRRGKINERLRCLQDIVPGCY--KTMGMTMMLDEIINYVQSLQNQVE 204 (264)
Q Consensus 153 sHs~aERrRRekIneri~~Lr~LVP~~~--Kk~dKAsIL~eAI~YIK~LQ~QV~ 204 (264)
+-+.-||+|=..+|.-|..|+..||..+ +++.|=..|.-|-.||--|=..+.
T Consensus 177 aanarErrrm~gLN~AfD~Lr~v~p~~~~d~~LSkyetLqmaq~yi~~l~~~l~ 230 (285)
T KOG4395|consen 177 AANARERRRMNGLNSAFDRLRLVVPDGDSDKKLSKYETLQMAQGYILALGCLLD 230 (285)
T ss_pred ccchHHHHHhhhHHHHHHHHHHhcCCCCccchhhhhhHHHHHHHHHhhhHHhhc
Confidence 4567899999999999999999999644 456888899999999988866554
No 22
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.41 E-value=52 Score=25.97 Aligned_cols=26 Identities=23% Similarity=0.248 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhc
Q 024653 188 MLDEIINYVQSLQNQVEFLSMKLTAA 213 (264)
Q Consensus 188 IL~eAI~YIK~LQ~QV~~Ls~~l~a~ 213 (264)
-+..||+-|.-||..|++|..+-..+
T Consensus 12 KiqqAvdTI~LLQmEieELKEknn~l 37 (79)
T COG3074 12 KVQQAIDTITLLQMEIEELKEKNNSL 37 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHh
Confidence 35679999999999999999877643
No 23
>KOG0139 consensus Short-chain acyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=31.36 E-value=45 Score=33.34 Aligned_cols=28 Identities=36% Similarity=0.479 Sum_probs=23.6
Q ss_pred chHHHHHHHHHH-------------HHHHHHHHHhhhhhcc
Q 024653 187 MMLDEIINYVQS-------------LQNQVEFLSMKLTAAS 214 (264)
Q Consensus 187 sIL~eAI~YIK~-------------LQ~QV~~Ls~~l~a~~ 214 (264)
.-+|++|+|++. ||.|+.++..+++++.
T Consensus 287 ~c~d~tI~Y~q~R~~FGk~l~d~Q~iQhqiA~~~teiEaaR 327 (398)
T KOG0139|consen 287 GCFDETIPYAQERLQFGKRLLDFQGLQHQIADMATEIEAAR 327 (398)
T ss_pred hHHHhhhHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHH
Confidence 347899999875 9999999999988864
No 24
>TIGR00986 3a0801s05tom22 mitochondrial import receptor subunit Tom22. translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tom22 proteins.
Probab=26.94 E-value=37 Score=29.72 Aligned_cols=39 Identities=23% Similarity=0.343 Sum_probs=29.7
Q ss_pred hhhhhHHHHHhhhcCCCCCcCCChhchHHHHHHHHHHHHH
Q 024653 162 RGKINERLRCLQDIVPGCYKTMGMTMMLDEIINYVQSLQN 201 (264)
Q Consensus 162 RekIneri~~Lr~LVP~~~Kk~dKAsIL~eAI~YIK~LQ~ 201 (264)
-|-|-|||-+|.++||..... .-.+...-+..++|.+=.
T Consensus 48 ~ETl~ERi~ALkDm~Pp~~R~-~i~~~~s~t~s~~ks~~s 86 (145)
T TIGR00986 48 EETFTDRIYALKDIVPPTTRG-WIYHKYSTTTNFVKSTLS 86 (145)
T ss_pred cCcHHHHHHHHHhhCCHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 356789999999999998763 456677777777776643
No 25
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=24.96 E-value=1e+02 Score=24.59 Aligned_cols=26 Identities=23% Similarity=0.248 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhc
Q 024653 188 MLDEIINYVQSLQNQVEFLSMKLTAA 213 (264)
Q Consensus 188 IL~eAI~YIK~LQ~QV~~Ls~~l~a~ 213 (264)
=+..|||-|.-||..|++|+++-..+
T Consensus 12 KIqqAvdtI~LLqmEieELKekn~~L 37 (79)
T PRK15422 12 KVQQAIDTITLLQMEIEELKEKNNSL 37 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35789999999999999999876553
No 26
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=21.77 E-value=1.4e+02 Score=22.97 Aligned_cols=26 Identities=19% Similarity=0.167 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcc
Q 024653 189 LDEIINYVQSLQNQVEFLSMKLTAAS 214 (264)
Q Consensus 189 L~eAI~YIK~LQ~QV~~Ls~~l~a~~ 214 (264)
+..||+-|.-||.+|++|..+..+..
T Consensus 13 i~~aveti~~Lq~e~eeLke~n~~L~ 38 (72)
T PF06005_consen 13 IQQAVETIALLQMENEELKEKNNELK 38 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 56799999999999999998766543
No 27
>PRK11020 hypothetical protein; Provisional
Probab=20.95 E-value=86 Score=26.63 Aligned_cols=44 Identities=11% Similarity=0.212 Sum_probs=28.5
Q ss_pred hhhhHHHHHhhhcCCCCCcCCChhchHHHHHHHHHHHHHHHHHHH
Q 024653 163 GKINERLRCLQDIVPGCYKTMGMTMMLDEIINYVQSLQNQVEFLS 207 (264)
Q Consensus 163 ekIneri~~Lr~LVP~~~Kk~dKAsIL~eAI~YIK~LQ~QV~~Ls 207 (264)
.++|+++..++.=.+..... +.+.++.+--+-|..|..++..|.
T Consensus 8 q~L~drLD~~~~Klaaa~~r-gd~~~i~qf~~E~~~l~k~I~~lk 51 (118)
T PRK11020 8 KRLSDRLDAIRHKLAAASLR-GDAEKYAQFEKEKATLEAEIARLK 51 (118)
T ss_pred HHHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888776666553 556666666666666655555554
Done!