BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024654
(264 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1RWT|A Chain A, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|B Chain B, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|C Chain C, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|D Chain D, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|E Chain E, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|F Chain F, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|G Chain G, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|H Chain H, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|I Chain I, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|J Chain J, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
Length = 232
Score = 449 bits (1155), Expect = e-127, Method: Compositional matrix adjust.
Identities = 218/232 (93%), Positives = 223/232 (96%), Gaps = 2/232 (0%)
Query: 35 RKTGSK--SVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAK 92
RKT K +V S SPWYGPDRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAK
Sbjct: 1 RKTAGKPKTVQSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAK 60
Query: 93 NRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIH 152
NRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+H
Sbjct: 61 NRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVH 120
Query: 153 AQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKE 212
AQSILAIWACQV+LMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLADDPEAFAELKVKE
Sbjct: 121 AQSILAIWACQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKE 180
Query: 213 IKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 264
IKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW +ATNFVPGK
Sbjct: 181 IKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWNFATNFVPGK 232
>pdb|1VCR|A Chain A, An Icosahedral Assembly Of Light-Harvesting Chlorophyll AB
Protein Complex From Pea Thylakoid Membranes
Length = 232
Score = 444 bits (1142), Expect = e-125, Method: Compositional matrix adjust.
Identities = 213/228 (93%), Positives = 220/228 (96%)
Query: 37 TGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNREL 96
T K SSGSPWYGPDRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETF+KNREL
Sbjct: 5 TTKKVASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNREL 64
Query: 97 EVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSI 156
EVIH RWAMLGALGCVFPELL+RNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSI
Sbjct: 65 EVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSI 124
Query: 157 LAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNG 216
LAIWA QV+LMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLADDPEAFAELKVKE+KNG
Sbjct: 125 LAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNG 184
Query: 217 RLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 264
RLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct: 185 RLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 232
>pdb|2BHW|A Chain A, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
pdb|2BHW|B Chain B, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
pdb|2BHW|C Chain C, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
Length = 232
Score = 441 bits (1135), Expect = e-124, Method: Compositional matrix adjust.
Identities = 212/228 (92%), Positives = 219/228 (96%)
Query: 37 TGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNREL 96
T K SSGSPWYGPDRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETF+KNREL
Sbjct: 5 TTKKVASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNREL 64
Query: 97 EVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSI 156
EVIH RWAMLGALG VFPELL+RNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSI
Sbjct: 65 EVIHSRWAMLGALGSVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSI 124
Query: 157 LAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNG 216
LAIWA QV+LMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLADDPEAFAELKVKE+KNG
Sbjct: 125 LAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNG 184
Query: 217 RLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 264
RLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct: 185 RLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 232
>pdb|2WSC|1 Chain 1, Improved Model Of Plant Photosystem I
pdb|2WSE|1 Chain 1, Improved Model Of Plant Photosystem I
pdb|2WSF|1 Chain 1, Improved Model Of Plant Photosystem I
Length = 241
Score = 139 bits (349), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 90/197 (45%), Positives = 110/197 (55%), Gaps = 21/197 (10%)
Query: 62 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 120
GEP P+YL G PGD+G+D GL P + +E E+IHCRWAML G + PE L
Sbjct: 51 GEPRPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEAL--- 107
Query: 121 GVKFGEAVWFKAGAQIFSEGG-LDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGP 179
G W KA GG YLGNP + ++ I A + + + VE R
Sbjct: 108 ----GYGNWVKAQEWAALPGGQATYLGNP--VPWGTLPTILAIEFLAIAFVEHQR----- 156
Query: 180 LGEVTDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGK 235
DP YPGG+FDPLG + DP+ ELKVKEIKNGRLA+ + GF V Q+ G
Sbjct: 157 -SMEKDPEKKKYPGGAFDPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGT 215
Query: 236 GPLENLADHLADPVNNN 252
GPLENLA HLADP +NN
Sbjct: 216 GPLENLATHLADPWHNN 232
>pdb|2O01|1 Chain 1, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 187
Score = 138 bits (347), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 90/197 (45%), Positives = 110/197 (55%), Gaps = 21/197 (10%)
Query: 62 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN 120
GEP P+YL G PGD+G+D GL P + +E E+IHCRWAML G + PE L
Sbjct: 3 GEPRPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEAL--- 59
Query: 121 GVKFGEAVWFKAGAQIFSEGGL-DYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGP 179
G W KA GG YLGNP + ++ I A + + + VE R
Sbjct: 60 ----GYGNWVKAQEWAALPGGQATYLGNP--VPWGTLPTILAIEFLAIAFVEHQR----- 108
Query: 180 LGEVTDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGK 235
DP YPGG+FDPLG + DP+ ELKVKEIKNGRLA+ + GF V Q+ G
Sbjct: 109 -SMEKDPEKKKYPGGAFDPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGT 167
Query: 236 GPLENLADHLADPVNNN 252
GPLENLA HLADP +NN
Sbjct: 168 GPLENLATHLADPWHNN 184
>pdb|2WSC|3 Chain 3, Improved Model Of Plant Photosystem I
pdb|2WSE|3 Chain 3, Improved Model Of Plant Photosystem I
pdb|2WSF|3 Chain 3, Improved Model Of Plant Photosystem I
Length = 276
Score = 130 bits (327), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 87/212 (41%), Positives = 118/212 (55%), Gaps = 35/212 (16%)
Query: 66 SYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGCVFPELLAR 119
SYL G PGDYG+D GLS DPE F + + L E+I+ R+AMLGA+G + PE+L +
Sbjct: 67 SYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGK 125
Query: 120 NGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIA- 176
G+ E WF+ G I G +Y + ++ ++ LMG E R
Sbjct: 126 AGLIPQETALPWFRTGF-IPPAGTYNYWADS--------YTLFVFEMALMGFAEHRRFQD 176
Query: 177 -GGP--------------LGEVTDPLYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAM 220
P LG +P YPGG F +PLG D ++ +LK+KE+KNGRLAM
Sbjct: 177 WAKPGSMGKQYFLGLEKGLGGSGEPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAM 236
Query: 221 FSMFGFFVQAIVTGKGPLENLADHLADPVNNN 252
++ G+FVQA+VTG GP +NL DHL DPV+NN
Sbjct: 237 LAILGYFVQALVTGVGPYQNLLDHLTDPVHNN 268
>pdb|2O01|2 Chain 2, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 186
Score = 128 bits (321), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 80/200 (40%), Positives = 107/200 (53%), Gaps = 32/200 (16%)
Query: 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 124
P +L G PGD+G+D GLS+DPE+ N + E++H RWAMLGA G PE L + G+
Sbjct: 1 PEWLDGSLPGDFGFDPLGLSSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGI-L 59
Query: 125 GEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG--GPLGE 182
W+ AG Q +Y + + ++ ++V +G EG R A P
Sbjct: 60 NTPSWYTAGEQ-------EYFTDTT--------TLFIVELVFIGWAEGRRWADILNPGCV 104
Query: 183 VTDPL------------YPGG-SFDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGFFV 228
TDP+ YPGG FDPLG P+ EL+ KEIKNGRLAM ++ G +
Sbjct: 105 NTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSASPQKLKELRTKEIKNGRLAMLAVMGAWF 164
Query: 229 QAIVTGKGPLENLADHLADP 248
Q I TG GP++NL HLADP
Sbjct: 165 QHIYTGTGPIDNLFAHLADP 184
>pdb|2WSC|2 Chain 2, Improved Model Of Plant Photosystem I
pdb|2WSE|2 Chain 2, Improved Model Of Plant Photosystem I
pdb|2WSF|2 Chain 2, Improved Model Of Plant Photosystem I
Length = 269
Score = 128 bits (321), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 86/216 (39%), Positives = 114/216 (52%), Gaps = 37/216 (17%)
Query: 51 PDRVKYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGAL 109
PDR + F G PP +L G PGD+G+D GL +DPE+ N + E++H RWAMLGA
Sbjct: 62 PDRPLW---FPGSTPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHSRWAMLGAA 118
Query: 110 GCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGA 169
G PE L + G+ W+ AG Q +Y + + ++ ++V +G
Sbjct: 119 GIFIPEFLTKLGI-LNTPSWYTAGEQ-------EYFTDTT--------TLFIVELVFIGW 162
Query: 170 VEGYRIAG--GPLGEVTDPL------------YPGGS-FDPLGLAD-DPEAFAELKVKEI 213
EG R A P TDP+ YPGG FDPLG P+ EL+ KEI
Sbjct: 163 AEGRRWADILNPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSASPQKLKELRTKEI 222
Query: 214 KNGRLAMFSMFGFFVQAIVTGKGPLENL-ADHLADP 248
KNGRLAM ++ G + Q I TG GP++NL A HLADP
Sbjct: 223 KNGRLAMLAVMGAWFQHIYTGTGPIDNLFAAHLADP 258
>pdb|3LW5|1 Chain 1, Improved Model Of Plant Photosystem I
Length = 170
Score = 125 bits (313), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 81/181 (44%), Positives = 99/181 (54%), Gaps = 20/181 (11%)
Query: 73 PGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKA 132
PGD+G+D GL P + +E E+IHCRWAML G + PE L G W KA
Sbjct: 3 PGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEAL-------GYGNWVKA 55
Query: 133 GAQIFSEGGL-DYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDP---LY 188
GG YLGNP + ++ I A + + + VE R DP Y
Sbjct: 56 QEWAALPGGQATYLGNP--VPWGTLPTILAIEFLAIAFVEHQR------SMEKDPEKKKY 107
Query: 189 PGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLAD 247
PGG+FDPLG + DP+ ELKVKEIKNGRLA+ + GF V Q+ G GPLENLA HLAD
Sbjct: 108 PGGAFDPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLAD 167
Query: 248 P 248
P
Sbjct: 168 P 168
>pdb|3PL9|A Chain A, Crystal Structure Of Spinach Minor Light-Harvesting
Complex Cp29 At 2.80 Angstrom Resolution
Length = 243
Score = 112 bits (279), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 86/231 (37%), Positives = 105/231 (45%), Gaps = 57/231 (24%)
Query: 65 PSYLTGEFPGDYGWDTAGLSADPE-----------TFAKN-------------------- 93
P YL G GDYG+D GL E AKN
Sbjct: 21 PEYLDGSLVGDYGFDPFGLGKPAEYLQYDYDGLDQNLAKNLAGDIIGTRTESADVKSTSL 80
Query: 94 ------------RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGG 141
RE E+IH RWAML LG + E L G+ W AG EG
Sbjct: 81 QPYSEVFGLQRFRECELIHGRWAMLATLGALTVEGL--TGI-----TWQDAGKVELIEGS 133
Query: 142 LDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADD 201
YLG P ++ IW +V+++G +E R A + LYPGG+FDPLGLA D
Sbjct: 134 -SYLGQPLPFSMTTL--IW-IEVLVIGYIEFQRNAEL---DTEKRLYPGGTFDPLGLASD 186
Query: 202 PEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 252
PE L++ EIK+ RLAM GF VQA VTGKGPL N HL+DP++
Sbjct: 187 PEKKPILQLAEIKHARLAMVGFLGFAVQAAVTGKGPLNNWVTHLSDPLHTT 237
>pdb|3LW5|2 Chain 2, Improved Model Of Plant Photosystem I
Length = 176
Score = 106 bits (265), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 69/180 (38%), Positives = 93/180 (51%), Gaps = 32/180 (17%)
Query: 85 ADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDY 144
+DPE+ N + E++H RWAMLGA G PE L + G+ W+ AG Q +Y
Sbjct: 1 SDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGI-LNTPSWYTAGEQ-------EY 52
Query: 145 LGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG--GPLGEVTDPL------------YPG 190
+ + ++ ++V +G EG R A P TDP+ YPG
Sbjct: 53 FTDTT--------TLFIVELVFIGWAEGRRWADILNPGCVNTDPIFPNNKLTGTDVGYPG 104
Query: 191 GS-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 248
G FDPLG P+ EL+ KEIKNGRLAM ++ G + Q I TG GP++NL HLADP
Sbjct: 105 GLWFDPLGWGSASPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 164
>pdb|2WSC|4 Chain 4, Improved Model Of Plant Photosystem I
pdb|2WSE|4 Chain 4, Improved Model Of Plant Photosystem I
pdb|2WSF|4 Chain 4, Improved Model Of Plant Photosystem I
Length = 251
Score = 105 bits (262), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 69/197 (35%), Positives = 97/197 (49%), Gaps = 25/197 (12%)
Query: 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 124
P YLTG PGD G+D GL+ DPE + E+++ RWAMLG G + PE+ G+
Sbjct: 63 PGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGI-I 121
Query: 125 GEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEG---------YRI 175
W+ AG + +Y + S + + ++ ++ ++
Sbjct: 122 NVPKWYAAGKE-------EYFASSSTLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIFKQ 174
Query: 176 AGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 235
P GEV YPGG F+PL A EA K KEI NGRL M + GF +Q VTGK
Sbjct: 175 YSLPAGEVG---YPGGIFNPLNFAPTLEA----KEKEIANGRL-MLAFLGFIIQHNVTGK 226
Query: 236 GPLENLADHLADPVNNN 252
GP +NL H++DP +N
Sbjct: 227 GPFDNLLQHISDPWHNT 243
>pdb|2O01|3 Chain 3, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 165
Score = 96.7 bits (239), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 63/169 (37%), Positives = 91/169 (53%), Gaps = 28/169 (16%)
Query: 97 EVIHCRWAMLGALGCVFPELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLIHAQ 154
E+I+ R+AMLGA G + PE+L + G+ E WF+ G I G Y +
Sbjct: 6 EIINGRFAMLGAAGAIAPEILGKAGLIPAETALPWFQTGV-IPPAGTYTYWADNY----- 59
Query: 155 SILAIWACQVVLMGAVEGYRIAG----GPLGEVT------------DPLYPGGSF-DPLG 197
++ ++ LMG E R+ G +G+ +P YPGG F +PLG
Sbjct: 60 ---TLFVLEMALMGFAEHRRLQDWYNPGSMGKQYFLGLEKGLAGSGNPAYPGGPFFNPLG 116
Query: 198 LADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLA 246
D ++ ELK+KE+KNGRLAM ++ G+F+Q +VTG GP +NL DHLA
Sbjct: 117 FGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHLA 165
>pdb|3LW5|3 Chain 3, Improved Model Of Plant Photosystem I
Length = 172
Score = 86.7 bits (213), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 65/181 (35%), Positives = 94/181 (51%), Gaps = 34/181 (18%)
Query: 85 ADPET---FAKNREL---EVIHCRWAMLGALGCVFPELLARNGVKFGEAV--WFKAGAQI 136
+DPE F + R L EVI+ R+AMLGA+G + PE L + G+ E WF+ G I
Sbjct: 1 SDPEGTGGFIEPRWLAYGEVINGRFAMLGAVGAIAPEYLGKVGLIPQETALAWFQTGV-I 59
Query: 137 FSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG----GPLGEVT-------- 184
G +Y + ++ ++ LMG E R G +G+
Sbjct: 60 PPAGTYNYWADN--------YTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGF 111
Query: 185 ----DPLYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 239
+P YPGG F +PLG D ++ ELK+KE+KNGRLAM ++ G+F+Q +VTG GP +
Sbjct: 112 GGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQ 171
Query: 240 N 240
N
Sbjct: 172 N 172
>pdb|2O01|4 Chain 4, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 165
Score = 85.9 bits (211), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 83/174 (47%), Gaps = 24/174 (13%)
Query: 87 PETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLG 146
PE + E+++ RWAMLG G + PE+ G+ W+ AG + +Y
Sbjct: 1 PENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGI-INVPKWYAAGKE-------EYFA 52
Query: 147 NPSLIHAQSILAIWACQVVLMGAVEG---------YRIAGGPLGEVTDPLYPGGSFDPLG 197
+ S + + ++ ++ ++ P GEV YPGG F+PL
Sbjct: 53 SSSTLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIFKQYSLPAGEVG---YPGGIFNPLN 109
Query: 198 LADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 251
A EA K KEI NGRLAM + GF +Q VTGKGP +NL H++DP +N
Sbjct: 110 FAPTLEA----KEKEIANGRLAMLAFLGFIIQHNVTGKGPFDNLLQHISDPWHN 159
>pdb|3LW5|4 Chain 4, Improved Model Of Plant Photosystem I
Length = 166
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 85/178 (47%), Gaps = 25/178 (14%)
Query: 83 LSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGL 142
L+ DPE + E+++ RWAMLG G + PE+ G+ W+ AG +
Sbjct: 1 LAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGI-INVPKWYAAGKE------- 52
Query: 143 DYLGNPSLIHAQSILAIWACQVVLMGAVEG---------YRIAGGPLGEVTDPLYPGGSF 193
+Y + S + + ++ ++ ++ P GEV YPGG F
Sbjct: 53 EYFASSSTLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIFKQYSLPAGEVG---YPGGIF 109
Query: 194 DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 251
+PL A EA K KEI NGRL M + GF +Q VTGKGP +NL H++DP +N
Sbjct: 110 NPLNFAPTLEA----KEKEIANGRL-MLAFLGFIIQHNVTGKGPFDNLLQHISDPWHN 162
>pdb|3DEP|B Chain B, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 12
Score = 28.1 bits (61), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/12 (100%), Positives = 12/12 (100%)
Query: 188 YPGGSFDPLGLA 199
YPGGSFDPLGLA
Sbjct: 1 YPGGSFDPLGLA 12
>pdb|3I1J|A Chain A, Structure Of A Putative Short Chain Dehydrogenase From
Pseudomonas Syringae
pdb|3I1J|B Chain B, Structure Of A Putative Short Chain Dehydrogenase From
Pseudomonas Syringae
Length = 247
Score = 27.3 bits (59), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 45/123 (36%), Gaps = 24/123 (19%)
Query: 140 GGLDYLGNPSLIHAQSILAI----------------WACQVVLMGAVEGYRIAGGPLGEV 183
G DY +P L+ + IL VVL+G E L EV
Sbjct: 1 GXFDYSAHPELLKGRVILVTGAARGIGAAAARAYAAHGASVVLLGRTE------ASLAEV 54
Query: 184 TDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMF-SMFGFFVQAIVTG-KGPLENL 241
+D + G PL +A + E + +E+ F + G A + G + PLE L
Sbjct: 55 SDQIKSAGQPQPLIIALNLENATAQQYRELAARVEHEFGRLDGLLHNASIIGPRTPLEQL 114
Query: 242 ADH 244
D
Sbjct: 115 PDE 117
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.137 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,008,573
Number of Sequences: 62578
Number of extensions: 411224
Number of successful extensions: 1135
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1071
Number of HSP's gapped (non-prelim): 28
length of query: 264
length of database: 14,973,337
effective HSP length: 97
effective length of query: 167
effective length of database: 8,903,271
effective search space: 1486846257
effective search space used: 1486846257
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)