Query 024654
Match_columns 264
No_of_seqs 254 out of 1176
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 06:23:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024654.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024654hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00025 photosystem II light 100.0 4.8E-82 1E-86 574.9 19.9 255 9-264 6-262 (262)
2 PLN00171 photosystem light-ha 100.0 2.6E-67 5.6E-72 488.2 18.4 215 42-256 97-321 (324)
3 PLN00187 photosystem II light- 100.0 2.9E-67 6.3E-72 482.5 18.4 197 45-257 44-284 (286)
4 PLN00098 light-harvesting comp 100.0 9.7E-65 2.1E-69 462.6 18.8 196 45-258 54-265 (267)
5 PLN00097 photosystem I light h 100.0 8.7E-65 1.9E-69 457.5 17.2 190 49-255 40-244 (244)
6 PLN00101 Photosystem I light-h 100.0 1.3E-63 2.9E-68 451.5 16.7 190 45-256 45-248 (250)
7 PLN00048 photosystem I light h 100.0 3.2E-62 6.9E-67 445.5 16.9 201 46-258 35-260 (262)
8 PLN00147 light-harvesting comp 100.0 8.2E-62 1.8E-66 440.5 16.8 197 45-258 37-250 (252)
9 PLN00099 light-harvesting comp 100.0 6.2E-62 1.3E-66 439.5 15.7 194 49-256 40-235 (243)
10 PLN00100 light-harvesting comp 100.0 1.8E-58 4E-63 416.4 16.4 176 50-256 32-208 (246)
11 PLN00170 photosystem II light- 100.0 3E-53 6.4E-58 384.5 14.4 171 51-242 49-254 (255)
12 PF00504 Chloroa_b-bind: Chlor 100.0 4.1E-43 9E-48 296.2 10.8 149 64-231 1-156 (156)
13 PLN00089 fucoxanthin-chlorophy 100.0 3.9E-42 8.4E-47 305.2 14.9 161 59-239 42-208 (209)
14 PLN00120 fucoxanthin-chlorophy 100.0 7.2E-35 1.6E-39 257.6 12.4 144 78-238 47-198 (202)
15 PLN00098 light-harvesting comp 99.6 2.6E-15 5.7E-20 137.9 6.6 56 185-240 76-132 (267)
16 PLN00101 Photosystem I light-h 99.6 2.2E-15 4.8E-20 137.3 6.0 54 185-238 67-121 (250)
17 PLN00147 light-harvesting comp 99.5 2.3E-14 5E-19 130.8 5.5 57 65-121 172-228 (252)
18 PLN00048 photosystem I light h 99.5 3.8E-14 8.3E-19 130.1 4.4 52 70-121 187-238 (262)
19 PLN00170 photosystem II light- 99.5 6.9E-14 1.5E-18 127.7 5.7 53 185-237 71-124 (255)
20 PLN00089 fucoxanthin-chlorophy 99.4 9.5E-14 2.1E-18 123.8 5.2 52 70-121 153-205 (209)
21 PLN00171 photosystem light-ha 99.4 1.1E-13 2.3E-18 129.9 5.5 54 184-237 123-177 (324)
22 PLN00097 photosystem I light h 99.4 1.3E-13 2.8E-18 125.3 5.8 53 185-237 58-111 (244)
23 PLN00187 photosystem II light- 99.4 1.3E-13 2.8E-18 127.8 4.9 51 71-121 213-263 (286)
24 PLN00025 photosystem II light 99.4 1.9E-13 4.1E-18 125.4 5.7 52 185-236 67-119 (262)
25 PLN00100 light-harvesting comp 99.4 2.6E-13 5.7E-18 123.3 5.4 50 184-233 48-98 (246)
26 PLN00099 light-harvesting comp 99.3 8.5E-13 1.8E-17 120.1 5.2 51 184-234 57-108 (243)
27 PF00504 Chloroa_b-bind: Chlor 99.3 9.4E-13 2E-17 111.2 4.1 49 67-115 107-155 (156)
28 PLN00120 fucoxanthin-chlorophy 99.1 1E-10 2.2E-15 104.0 4.8 49 70-118 142-193 (202)
29 PLN00084 photosystem II subuni 98.1 2.4E-06 5.3E-11 74.3 3.7 50 202-251 129-179 (214)
30 PHA02337 putative high light i 98.0 5.4E-06 1.2E-10 54.4 3.2 28 210-237 4-31 (35)
31 PLN00014 light-harvesting-like 97.5 7.4E-05 1.6E-09 67.8 3.2 37 208-244 159-195 (250)
32 PHA02337 putative high light i 97.2 0.00023 4.9E-09 46.8 2.1 27 94-120 3-29 (35)
33 PLN00014 light-harvesting-like 94.9 0.013 2.8E-07 53.5 1.5 28 94-121 160-187 (250)
34 PLN00084 photosystem II subuni 90.7 0.16 3.5E-06 44.7 2.2 35 88-122 130-165 (214)
35 PLN02449 ferrochelatase 51.5 11 0.00024 38.1 2.5 21 218-238 463-483 (485)
36 PHA00649 hypothetical protein 24.2 92 0.002 23.8 3.0 31 85-116 31-68 (83)
37 PHA00003 B internal scaffoldin 24.2 1.4E+02 0.0031 24.6 4.3 46 177-225 33-79 (120)
No 1
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional
Probab=100.00 E-value=4.8e-82 Score=574.90 Aligned_cols=255 Identities=85% Similarity=1.428 Sum_probs=232.3
Q ss_pred ccccccccccCCCCCC--ccccCccccccccCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCccCCC
Q 024654 9 SSSFVGKAVNLAPSGN--ELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSAD 86 (264)
Q Consensus 9 ~~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~wyg~~r~~~lgpf~~~~P~~L~G~~pGd~gfDPlGLs~d 86 (264)
+++|+|++..+..... ++ +.+|++||++.++...+.+.||++||++|||||+.++|+||||++||||||||+||++|
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~R~~~l~p~~~~~P~~Ldg~~pGD~GfDPlGls~d 84 (262)
T PLN00025 6 STAFAGQAALKPPNELSRKV-GNGRVTMRKTVAKAAGSGSIWYGPDRPKYLGPFSGETPSYLTGEFPGDYGWDTAGLSAD 84 (262)
T ss_pred hhhhhccccccCCcccchhc-cccchhhchhhcccccccccccCCCCccccCCcccCCcccccCcCCCCCCCCccccccC
Confidence 3899999875554422 33 33688888753333235678999999999999998899999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhHhhhchhhhhhhhhhcCcccCchhhhhcccccccCCCcccCCCCchhhHHHHHHHHHHHHHH
Q 024654 87 PETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVL 166 (264)
Q Consensus 87 ~e~~~~~ReaELkHGR~AMLA~lG~l~pE~l~~~G~~f~~~~w~~ag~~~~~~g~l~~~~~p~~~~aq~i~~~~~~~~~l 166 (264)
|++++||||+|||||||||||++||++||+++..|+.|++++||++|.++|++++++|+++|.++++|++.+++++|+++
T Consensus 85 p~~~~~~re~El~hGR~AMLa~~G~i~~e~l~~~g~~~~~~~W~~ag~~~~~~gg~~y~~~p~~~~~~~~~a~~~~qv~l 164 (262)
T PLN00025 85 PETFARNRELEVIHARWAMLGALGCVTPELLAKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVL 164 (262)
T ss_pred HHHHHHHHHHHHhccHHHHHHHhhhhhHHHhhcCCcCcCcccccccccccccccccccccCcccchhhhHHHHHHHHHHH
Confidence 99999999999999999999999999999998888888888999999999999999999999999999999999999999
Q ss_pred HHhhhceeccCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhcCCCchhhhhhhhC
Q 024654 167 MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLA 246 (264)
Q Consensus 167 ~g~vE~~r~~gg~~g~~~d~~yPGg~FDPLgl~~dpe~~~~lk~kELkNGRLAMlA~~G~~~Q~~vtGkgPl~nl~~hla 246 (264)
||++|.+|+.+++.++..|+.||||.||||||.+|+|+++++|+||||||||||+||+||++|+++||+||++||.+||+
T Consensus 165 mg~~E~~r~~~~~~~~~~d~~yPG~~FDPlGl~~d~~~~~~~k~kEikNGRLAMlA~~G~~~q~~vTG~GPlenL~~hla 244 (262)
T PLN00025 165 MGAVEGYRVNGGPLGEGLDPLYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLA 244 (262)
T ss_pred HHHHHHhcccCCcccccccCcCCcccCCccccCCCHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhhcCCChHHHHHHHhc
Confidence 99999999988777776788999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcchhccccccCCCC
Q 024654 247 DPVNNNAWAYATNFVPGK 264 (264)
Q Consensus 247 ~P~~~n~~~~~~~~~~~~ 264 (264)
||++||+|+++++|+|++
T Consensus 245 dP~~~n~~~~~~~~~~~~ 262 (262)
T PLN00025 245 DPVANNAWAYATNFVPGK 262 (262)
T ss_pred CccccchhhhhhhcCCCC
Confidence 999999999999999985
No 2
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
Probab=100.00 E-value=2.6e-67 Score=488.17 Aligned_cols=215 Identities=53% Similarity=0.925 Sum_probs=191.4
Q ss_pred CCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCccCCCHHHHHHHHHHHHhhhhhhHhhhchhhhhhhhhhcC
Q 024654 42 VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNG 121 (264)
Q Consensus 42 ~~~~~~wyg~~r~~~lgpf~~~~P~~L~G~~pGd~gfDPlGLs~d~e~~~~~ReaELkHGR~AMLA~lG~l~pE~l~~~G 121 (264)
+.+.+.||+++|++|+||++.++|+||||++|||||||||||++|+++++||||+|||||||||||++||++||++++.|
T Consensus 97 ~~~~~~~~g~~R~~wl~~~~~~~P~yLdG~lpGD~GFDPLGL~~dp~~l~~~reaELkHGR~AMLA~~G~lv~e~l~~~g 176 (324)
T PLN00171 97 ARNESFWYGEERPRWLGPIPYDYPDHLTGELPGDYGFDIAGLGKDPVAFDKYFNFEILHARWAMLAALGVVIPEVLDLFG 176 (324)
T ss_pred hcccCcccCCCCccccCCCCCCCCcccCCCCCcccCCCccccccCHHHHHHHHHHHhccchHHHHHHhhHHHHHHhccCC
Confidence 34467899999999999887789999999999999999999999999999999999999999999999999999998754
Q ss_pred -cccCchhhhhcccccccCCCcccCCCCchh--hHHHHHHHHHHHHHHHHhhhceeccCC----CCC--CCCCCCCCCCC
Q 024654 122 -VKFGEAVWFKAGAQIFSEGGLDYLGNPSLI--HAQSILAIWACQVVLMGAVEGYRIAGG----PLG--EVTDPLYPGGS 192 (264)
Q Consensus 122 -~~f~~~~w~~ag~~~~~~g~l~~~~~p~~~--~aq~i~~~~~~~~~l~g~vE~~r~~gg----~~g--~~~d~~yPGg~ 192 (264)
+.|.+++||++|...++...++|++.|... ..|++..++++|+++|+.+|.+|+.+. +.+ ..+|..||||.
T Consensus 177 ~~~~~~p~W~~aG~~~~~g~~~~y~~~p~~~~~~~q~l~~i~~iEillm~g~E~~R~~~~~~~~~~g~~~PGD~gYPGG~ 256 (324)
T PLN00171 177 AVHFAEPVWWRVGYAKLQGDTLDYLGIPGLHIAGSQGVIVIAICQALLMVGPEYARYCGIEALEPLGIYLPGDINYPGGA 256 (324)
T ss_pred ccccCccchhhcccccccccchhhccCCccccchhHHHHHHHHHHHHHhhhhhheeeccccccCCccccCCCcccCCccc
Confidence 557778999999777776778888888643 347888899999999999999997652 112 34577899995
Q ss_pred -CCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhcCCCchhhhhhhhCCCCCcchhcc
Q 024654 193 -FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAY 256 (264)
Q Consensus 193 -FDPLgl~~dpe~~~~lk~kELkNGRLAMlA~~G~~~Q~~vtGkgPl~nl~~hla~P~~~n~~~~ 256 (264)
||||||.+|+++++++|++|||||||||+||+||++|+++||++|++||.+|++||++||++++
T Consensus 257 ~FDPLGl~~d~~~~~~~k~kELkNGRLAM~A~lG~~vq~~vTG~GPlenL~~hladP~~~Ni~~~ 321 (324)
T PLN00171 257 LFDPLGLSKDPVAFEDLKVKEIKNGRLAMVAWLGFYIQAAVTGKGPVQNLVDHLSDPLHNNLLSS 321 (324)
T ss_pred CCCccccCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhHhhcCCChHHHHHHHhcCccccchHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999875
No 3
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional
Probab=100.00 E-value=2.9e-67 Score=482.47 Aligned_cols=197 Identities=44% Similarity=0.717 Sum_probs=173.8
Q ss_pred CCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCccCCCHHH-----------------------------------
Q 024654 45 GSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPET----------------------------------- 89 (264)
Q Consensus 45 ~~~wyg~~r~~~lgpf~~~~P~~L~G~~pGd~gfDPlGLs~d~e~----------------------------------- 89 (264)
.++||++||++|+ |.+ ++|+||||++|||||||||||++|||.
T Consensus 44 ~~~~~~~~r~~w~-p~~-~~P~~LdGslpGD~GfDplgL~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (286)
T PLN00187 44 KSSKVGADRPLWF-PGA-KAPEWLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLAGDVIGTRTEASEIKSTPF 121 (286)
T ss_pred CccCCCCCccccC-CCC-CCcccccCCCCCcCCCCcccccCChHhhhhcccchhhhhhhccccccccccccccccccccc
Confidence 4679999999999 776 999999999999999999999999986
Q ss_pred --------HHHHHHHHHhhhhhhHhhhchhhhhhhhhhcCcccCchhhhhcccccccCCCcccCCCCchhhHHHHHHHHH
Q 024654 90 --------FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA 161 (264)
Q Consensus 90 --------~~~~ReaELkHGR~AMLA~lG~l~pE~l~~~G~~f~~~~w~~ag~~~~~~g~l~~~~~p~~~~aq~i~~~~~ 161 (264)
|+||||+|||||||||||++||++||++. |+ .|+++|.+++.++ ..|+++|... .+.++++
T Consensus 122 ~p~~~~f~l~r~REaELiHGRwAMLAvaG~lvpEll~--G~-----~W~~aG~~~~~~g-~~y~g~~~p~---~~~~l~~ 190 (286)
T PLN00187 122 QPYSEVFGLQRFRECELIHGRWAMLATLGALSVEALT--GV-----TWQDAGKVELVDG-SSYLGQPLPF---SITTLIW 190 (286)
T ss_pred CcchhhhHHHHHHHHHhhhhHHHHHHhhchhhHHhcc--CC-----ccccccccccccc-ccccccccch---hHHHHHH
Confidence 69999999999999999999999999984 43 4999998776655 4688777322 4556788
Q ss_pred HHHHHHHhhhceeccCCCCCCCCCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhcCCCchhh
Q 024654 162 CQVVLMGAVEGYRIAGGPLGEVTDPLYPGG-SFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 240 (264)
Q Consensus 162 ~~~~l~g~vE~~r~~gg~~g~~~d~~yPGg-~FDPLgl~~dpe~~~~lk~kELkNGRLAMlA~~G~~~Q~~vtGkgPl~n 240 (264)
+|+++||++|.+|+.+. +..+..|||| .||||||.+|+++++++|++|||||||||+||+||++|+++||+||++|
T Consensus 191 iqvllmG~~E~~R~~~~---~~~~~~yPGg~~FDPlGl~~d~e~~~~~k~kEIkNGRLAMlA~lG~~vq~~vtg~GPi~n 267 (286)
T PLN00187 191 IEVLVIGYIEFQRNAEL---DPEKRLYPGGKFFDPLGLAADPEKKETLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNN 267 (286)
T ss_pred HHHHHHHHHHhhhccCC---CCCCCCCCccccccccccCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCChHHH
Confidence 89999999999997641 2346689999 5999999999999999999999999999999999999999999999999
Q ss_pred hhhhhCCCCCcchhccc
Q 024654 241 LADHLADPVNNNAWAYA 257 (264)
Q Consensus 241 l~~hla~P~~~n~~~~~ 257 (264)
|.+||+||++||++++.
T Consensus 268 L~~Hladp~~~n~~~~~ 284 (286)
T PLN00187 268 WATHLSDPLHTTIIDTF 284 (286)
T ss_pred HHHHhcCcccccHHHhc
Confidence 99999999999997653
No 4
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
Probab=100.00 E-value=9.7e-65 Score=462.57 Aligned_cols=196 Identities=44% Similarity=0.787 Sum_probs=169.6
Q ss_pred CCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCccCCCHHHHHHHHHHHHhhhhhhHhhhchhhhhhhhhhcCccc
Q 024654 45 GSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 124 (264)
Q Consensus 45 ~~~wyg~~r~~~lgpf~~~~P~~L~G~~pGd~gfDPlGLs~d~e~~~~~ReaELkHGR~AMLA~lG~l~pE~l~~~G~~f 124 (264)
...+|++||++|+ |.. ++|+||||++||||||||+||++|+++++||||+|||||||||||++||++||++++.|+ +
T Consensus 54 ~~~~~~~~r~~w~-Pg~-~~P~~LdG~~pGD~GFDPlgl~~~~~~~~~~r~aEl~HGR~AMLA~~G~~~~e~l~~~g~-~ 130 (267)
T PLN00098 54 VCEPLPPDRPLWF-PGS-SPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHSRWAMLAVAGILIPECLERLGF-I 130 (267)
T ss_pred ccccCCCCccccC-CCC-CCCccCCCCCCCCCCcCccccCCCHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCc-c
Confidence 4568999999999 776 899999999999999999999999999999999999999999999999999999987665 4
Q ss_pred CchhhhhcccccccCCCcccCCCCchhhHHHHHHHHHHHHHHHHhhhceeccC----CCCC----------CCCCCCCCC
Q 024654 125 GEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG----GPLG----------EVTDPLYPG 190 (264)
Q Consensus 125 ~~~~w~~ag~~~~~~g~l~~~~~p~~~~aq~i~~~~~~~~~l~g~vE~~r~~g----g~~g----------~~~d~~yPG 190 (264)
....||++|. .+|+.+|. .++++|+++||++|++|+++ +..+ ...|..|||
T Consensus 131 ~~~~w~~Ag~-------~~~~~~~~--------~l~~~q~~lmG~~E~~R~~~~~~~g~~~~~~~~~~~~~~~~d~~yPG 195 (267)
T PLN00098 131 ENFSWYDAGA-------REYFADPT--------TLFVVQMVLMGWAEGRRWADLIKPGCVDIEPKLPNKTNPKPDVGYPG 195 (267)
T ss_pred cccccccccc-------hhhccCch--------HHHHHHHHHHHHHHHHHhhcccCCccccccccccccccCCCCCCCCC
Confidence 4557998864 24555552 34677888999999999764 1111 123568999
Q ss_pred CC-CCCCCCC-CCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhcCCCchhhhhhhhCCCCCcchhcccc
Q 024654 191 GS-FDPLGLA-DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYAT 258 (264)
Q Consensus 191 g~-FDPLgl~-~dpe~~~~lk~kELkNGRLAMlA~~G~~~Q~~vtGkgPl~nl~~hla~P~~~n~~~~~~ 258 (264)
|. ||||||. +|+|+++++|+||||||||||+||+||++|+++||++|++||.+||+||++||++++.|
T Consensus 196 g~~FDPlgl~~~d~~~~~~~k~kEikNGRLAM~A~~G~~~q~~vTG~gPl~nL~~hladP~~~n~~~~~~ 265 (267)
T PLN00098 196 GLWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFCFQAVYTGEGPIENLMAHLADPGHCNVFSAFT 265 (267)
T ss_pred CccCCcccCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhcCCChHHHHHHHhcCcccccchhhcc
Confidence 96 9999997 48999999999999999999999999999999999999999999999999999977644
No 5
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
Probab=100.00 E-value=8.7e-65 Score=457.54 Aligned_cols=190 Identities=42% Similarity=0.662 Sum_probs=165.3
Q ss_pred CCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCccCCCHHHHHHHHHHHHhhhhhhHhhhchhhhhhhhhhcCcccCchh
Q 024654 49 YGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAV 128 (264)
Q Consensus 49 yg~~r~~~lgpf~~~~P~~L~G~~pGd~gfDPlGLs~d~e~~~~~ReaELkHGR~AMLA~lG~l~pE~l~~~G~~f~~~~ 128 (264)
..++|++|+ |.+ ++|+||||++||||||||+||++|+++++||||+|||||||||||++||++||+++..|+. ..+.
T Consensus 40 ~~~~R~~w~-Pg~-~~P~~LdG~~pGD~GfDPlGl~~~~~~~~~~r~aEl~hGR~AMLa~~G~lv~e~l~~~g~~-~~p~ 116 (244)
T PLN00097 40 AAADRPTWL-PGK-AAAAHLDGSLPCDYGFDPLNLGADPEMLKWFVQAELMHARWAMLGLAGCVAPELLTKIGMA-DLPN 116 (244)
T ss_pred cCCCCcccC-CCC-CCccccCCCCCCCCCCCccccCcCHHHHHHHHHHHHhcchHHHHHHhhhhHHHHhcCCCcc-cCCc
Confidence 568999999 776 8999999999999999999999999999999999999999999999999999999887773 3467
Q ss_pred hhhcccccccCCCcccCCCCchhhHHHHHHHHHHHHHHHHhhhceeccCC---------CC------CCCCCCCCCCCCC
Q 024654 129 WFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGG---------PL------GEVTDPLYPGGSF 193 (264)
Q Consensus 129 w~~ag~~~~~~g~l~~~~~p~~~~aq~i~~~~~~~~~l~g~vE~~r~~gg---------~~------g~~~d~~yPGg~F 193 (264)
||++++.. .|+... .+++.+|+++|+++|.+|+++- ++ .+..|..||||.|
T Consensus 117 W~~Ag~~~------~~~~~~--------~~l~~i~~~lmg~~E~~r~~~~~~pg~~~~~p~~~~~~~~~~~d~gYPgg~F 182 (244)
T PLN00097 117 WIDAAKWD------GYWAGA--------GPLFFIQMAMFNWAEIRRWQDMKAPGSMNEDPLFGANKGDTNTDVGYPKGLF 182 (244)
T ss_pred cccCCcch------hccccc--------hhHHHHHHHHHHHHHHHHhhcccCCCccccccccccccCCcccccCCCCCCC
Confidence 99987531 133211 2457789999999999997641 11 1224667999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhcCCCchhhhhhhhCCCCCcchhc
Q 024654 194 DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA 255 (264)
Q Consensus 194 DPLgl~~dpe~~~~lk~kELkNGRLAMlA~~G~~~Q~~vtGkgPl~nl~~hla~P~~~n~~~ 255 (264)
|||||.+|+++++++|+||||||||||+||+||++|+++||+||++||.+|++||++||+|.
T Consensus 183 DPlgl~~d~~~~~~lk~kEiknGRLAM~A~~G~~~q~~vTGkGPl~nL~~HladP~~~n~~~ 244 (244)
T PLN00097 183 DKFGWAKDEKKAAELKLKEIANGRLAMLAFLGCCAQAIQTGTGPVDNLFSHLADPGHNGIFG 244 (244)
T ss_pred CccccCCCHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhccCCCHHHHHHHHhcCccccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999973
No 6
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional
Probab=100.00 E-value=1.3e-63 Score=451.49 Aligned_cols=190 Identities=38% Similarity=0.695 Sum_probs=164.5
Q ss_pred CCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCccCCCHHHHHHHHHHHHhhhhhhHhhhchhhhhhhhhhcCccc
Q 024654 45 GSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 124 (264)
Q Consensus 45 ~~~wyg~~r~~~lgpf~~~~P~~L~G~~pGd~gfDPlGLs~d~e~~~~~ReaELkHGR~AMLA~lG~l~pE~l~~~G~~f 124 (264)
.+.++.++|++|+ |+. ++|+||||++||||||||+||++|+++++|||++|||||||||||++|+++||+++..|+.
T Consensus 45 ~~~~~~~~r~~W~-P~~-~~P~~LdG~~PGD~GFDPlGl~~d~~~~~~~r~aEl~hGRlAMla~~G~l~~e~l~~~g~~- 121 (250)
T PLN00101 45 RSFKVEAKKGEWL-PGL-ASPGYLNGSLPGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGII- 121 (250)
T ss_pred ccccccccccccC-CCC-CCCcccCCCCCCccCCCccccCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCCCCc-
Confidence 4568889999999 887 8999999999999999999999999999999999999999999999999999999877753
Q ss_pred CchhhhhcccccccCCCcccCCCCchhhHHHHHHHHHHHHHHHHhhhceeccC----CCCC----------CCCCCCCCC
Q 024654 125 GEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG----GPLG----------EVTDPLYPG 190 (264)
Q Consensus 125 ~~~~w~~ag~~~~~~g~l~~~~~p~~~~aq~i~~~~~~~~~l~g~vE~~r~~g----g~~g----------~~~d~~yPG 190 (264)
..+.|+++|+. +|+..+ ..++.+|+++|+++|.+|+++ |+.+ ..+|..|||
T Consensus 122 ~~p~w~~ag~~-------~~~~~~--------~~l~~ie~~~mg~~E~~R~~~~~~pG~~~~~~~~~~~~~~~gd~~YPG 186 (250)
T PLN00101 122 NAPQWYDAGKA-------EYFASS--------STLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPG 186 (250)
T ss_pred CCCccccccch-------hhcccc--------hHHHHHHHHHHHHHHHHHhhcccCCCcccccccccccccCCccccCCC
Confidence 34679998642 354433 246778899999999999764 2111 124668999
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhcCCCchhhhhhhhCCCCCcchhcc
Q 024654 191 GSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAY 256 (264)
Q Consensus 191 g~FDPLgl~~dpe~~~~lk~kELkNGRLAMlA~~G~~~Q~~vtGkgPl~nl~~hla~P~~~n~~~~ 256 (264)
|.||||||.+++ ++|+||||||||||+||+||++|+++||+||++||.+||+||+|||++++
T Consensus 187 G~FDPLgl~~~~----~~k~kEIKNGRLAM~A~lGf~~Q~~vTG~gPi~nL~~hladP~~~ni~~~ 248 (250)
T PLN00101 187 GIFNPLNFAPTE----EAKEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDPWHNTIVQT 248 (250)
T ss_pred CccCccCCCccH----HHHHHHHhhcchHHHHHhhHhheehccCCChHHHHHHHhcCCcccchhhh
Confidence 999999998763 89999999999999999999999999999999999999999999999765
No 7
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
Probab=100.00 E-value=3.2e-62 Score=445.50 Aligned_cols=201 Identities=45% Similarity=0.798 Sum_probs=170.8
Q ss_pred CCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCccCCCHH------HHHHHHHHHHhhhhhhHhhhchhhhhhhhhh
Q 024654 46 SPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPE------TFAKNRELEVIHCRWAMLGALGCVFPELLAR 119 (264)
Q Consensus 46 ~~wyg~~r~~~lgpf~~~~P~~L~G~~pGd~gfDPlGLs~d~e------~~~~~ReaELkHGR~AMLA~lG~l~pE~l~~ 119 (264)
..+|+++|++|+ |.. ++|+||||++|||||||||||+ ||+ +.+|+|++|||||||||||++||++||++++
T Consensus 35 ~~~~~~~r~~w~-p~~-~~P~yLdG~lPGD~GFDPlGL~-~p~~~~~~~~~~~~r~aEL~hGR~AMLa~~G~lv~Ell~~ 111 (262)
T PLN00048 35 PAKQGADRQLWF-ASK-QSLSYLDGTLPGDFGFDPLGLS-DPEGAGGFIEPQWLAYGEVINGRFAMLGAAGAIAPEILGK 111 (262)
T ss_pred CCCCCCCCceec-CCC-CCccccCCCCCCccCCCccccC-CccccccchhHHHHHHHHhhcchHHHHHHhhHHHHHHhcc
Confidence 457899999999 776 9999999999999999999998 443 6799999999999999999999999999987
Q ss_pred cCcccC--chhhhhcccccccCCCcccCCCCchhhHHHHHHHHHHHHHHHHhhhceeccC----CCCC------------
Q 024654 120 NGVKFG--EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG----GPLG------------ 181 (264)
Q Consensus 120 ~G~~f~--~~~w~~ag~~~~~~g~l~~~~~p~~~~aq~i~~~~~~~~~l~g~vE~~r~~g----g~~g------------ 181 (264)
.|+... ...||++|+ +...+..+|+++|. +++++|+++||++|.+|+++ ++.+
T Consensus 112 ~g~~~~~~~~~w~~ag~-~~~~~~~~y~~~p~--------~l~~~~~~lmg~~E~~R~~~~~~pG~~~~~~~~~~~~~~~ 182 (262)
T PLN00048 112 AGLIPQETALPWFQSGV-IPPAGTYDYWADPY--------TLFVLEMALMGFAEHRRAQDYYKPGSMGKQYFLGLEKGLG 182 (262)
T ss_pred CCccccccccccccccc-cccccccccccchh--------HHHHHHHHHhhheeeeccccccCCCcccccccccchhccc
Confidence 665321 235999986 44455667877762 46788999999999999865 2111
Q ss_pred CCCCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhcCCCchhhhhhhhCCCCCcchhcccc
Q 024654 182 EVTDPLYPGG-SFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYAT 258 (264)
Q Consensus 182 ~~~d~~yPGg-~FDPLgl~~dpe~~~~lk~kELkNGRLAMlA~~G~~~Q~~vtGkgPl~nl~~hla~P~~~n~~~~~~ 258 (264)
...|..|||| .||||||.+|+|+++++|+||||||||||+|++||++|+++||++|++||.+||+||+|||++++.+
T Consensus 183 ~~~d~~yPG~~~fDPlGl~~~~e~~~~~k~~EiknGRLAM~A~~G~~~q~~~tg~gp~~~L~~hladP~~~ni~~~~~ 260 (262)
T PLN00048 183 GSGNPAYPGGPFFNPLGFGKDEKSMKELKLKEVKNGRLAMLAILGYFIQALVTGVGPFQNLLDHLADPVNNNVLTNLK 260 (262)
T ss_pred cccccccccccccCccccccchHHHHHHHHHHHhhhHHHHHHhhhHhhhhhhcCCCHHHHHHHHhcCccccccccccc
Confidence 1126689999 5999999999999999999999999999999999999999999999999999999999999977643
No 8
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
Probab=100.00 E-value=8.2e-62 Score=440.46 Aligned_cols=197 Identities=43% Similarity=0.765 Sum_probs=167.9
Q ss_pred CCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCccCCCHHHHHHHHHHHHhhhhhhHhhhchhhhhhhhhhcCccc
Q 024654 45 GSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 124 (264)
Q Consensus 45 ~~~wyg~~r~~~lgpf~~~~P~~L~G~~pGd~gfDPlGLs~d~e~~~~~ReaELkHGR~AMLA~lG~l~pE~l~~~G~~f 124 (264)
.+..++++|++|+ ||+ ++|+||||++|||+||||+||++|+++++||||+|||||||||||++||++||+++..|+.
T Consensus 37 ~~~~~~~~R~~wl-P~~-~~P~~Ldg~~pGD~GFDPlgl~~d~~~~~~~r~aElkhGR~AMlA~~G~l~~e~~~~~g~~- 113 (252)
T PLN00147 37 INPVVAQERPTWL-PGL-DPPPHLDGTLAGDFGFDPLGLGEDPESLKWYVQAELVHSRFAMAGVAGILFTDLLRVTGIR- 113 (252)
T ss_pred CcccCCCCccccC-CCC-CCCCcCCCCCCCccCCCcccccCCHHHHHHHHHHHhhccHHHHHHHhhhhHHHHhccCCCc-
Confidence 3457899999999 887 8999999999999999999999999999999999999999999999999999999887763
Q ss_pred CchhhhhcccccccCCCcccCCCCchhhHHHHHHHHHHHHHHHHhhhceeccC----CCC-------C-----CCCCCCC
Q 024654 125 GEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG----GPL-------G-----EVTDPLY 188 (264)
Q Consensus 125 ~~~~w~~ag~~~~~~g~l~~~~~p~~~~aq~i~~~~~~~~~l~g~vE~~r~~g----g~~-------g-----~~~d~~y 188 (264)
..+.|++++..++. + . ...+++++|+++||++|.+|+.+ ++. + +..++.|
T Consensus 114 ~~p~w~~ag~~~~~-----~-~--------~~~~~~~~q~~~mG~~E~~R~~~~~~pg~~~~~g~~~g~~~~~~~~~~~y 179 (252)
T PLN00147 114 NLPVWYEAGAVKFE-----F-A--------STRTLFVVQLLLMGFAETKRYMDFVSPGSQAKEGSFFGLEAALEGLEPGY 179 (252)
T ss_pred CCcchhhcccchhc-----c-c--------cchHHHHHHHHHHHHHHHHhhccccCCCccccccccccccccccccCCCC
Confidence 34579988754321 1 1 11345677889999999988643 111 1 1234679
Q ss_pred CCCC-CCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhcCCCchhhhhhhhCCCCCcchhcccc
Q 024654 189 PGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYAT 258 (264)
Q Consensus 189 PGg~-FDPLgl~~dpe~~~~lk~kELkNGRLAMlA~~G~~~Q~~vtGkgPl~nl~~hla~P~~~n~~~~~~ 258 (264)
|||. ||||||.+|+++++++|+||||||||||+||+||++|+++||+||++||.+||+||+|||++++.+
T Consensus 180 PGd~~FDPlGl~~d~~~~~~~k~kEikNGRLAMlA~~G~~~q~~vtg~Gp~~nL~~hladP~~~ni~~~~~ 250 (252)
T PLN00147 180 PGGPLFNPLGLAKDIENAHDWKLKEIKNGRLAMVAMLGFFVQASVTHTGPIDNLLTHLSDPWHKTIIQTLS 250 (252)
T ss_pred cccccCCccccCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCChHHHHHHHhcCcccchhhhhhc
Confidence 9995 999999999999999999999999999999999999999999999999999999999999976543
No 9
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
Probab=100.00 E-value=6.2e-62 Score=439.47 Aligned_cols=194 Identities=43% Similarity=0.734 Sum_probs=165.6
Q ss_pred CCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCccCCCHHHHHHHHHHHHhhhhhhHhhhchhhhhhhhhhcCcccCchh
Q 024654 49 YGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAV 128 (264)
Q Consensus 49 yg~~r~~~lgpf~~~~P~~L~G~~pGd~gfDPlGLs~d~e~~~~~ReaELkHGR~AMLA~lG~l~pE~l~~~G~~f~~~~ 128 (264)
+.++|..|+ |+. ++|+||||++||||||||+||++++++++||||+|||||||||||++||++||+++. ..
T Consensus 40 ~~~~~~~w~-P~~-~~P~~Ldg~~pgd~GfDPlgls~~~~~~~~~r~~ELkHGR~AMLAv~G~i~~E~l~~-------~~ 110 (243)
T PLN00099 40 RVTMSADWM-PGQ-PRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGL-------GN 110 (243)
T ss_pred ccccccccc-CCC-CCCccCCCCCCcccCCCccccccCHHHHHHHHHHhccCCcHHHHHHhhHHHHHHhcc-------CC
Confidence 346777888 887 999999999999999999999999999999999999999999999999999998753 23
Q ss_pred hhhcccc-cccCCCcccCCCCchhhHHHHHHHHHHHHHHHHhhhceeccCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q 024654 129 WFKAGAQ-IFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAE 207 (264)
Q Consensus 129 w~~ag~~-~~~~g~l~~~~~p~~~~aq~i~~~~~~~~~l~g~vE~~r~~gg~~g~~~d~~yPGg~FDPLgl~~dpe~~~~ 207 (264)
|+++++. .+.++..+|+++|. ....+++++++|+++||++|.+|.... ...+..||||.||||||.+|++++++
T Consensus 111 w~~a~~~~~~~~g~~~~~g~~~--~~~~l~~~~~iqvl~ig~~E~~r~~~~---~~~~~~yPGd~FDPlGl~kd~~~~~~ 185 (243)
T PLN00099 111 WVKAQEWAAIPGGQATYLGNPV--PWGTLPTILAIEFLAIAFVEHQRSMEK---DPEKKKYPGGAFDPLGYSKDPKKFEE 185 (243)
T ss_pred cccccchhccCcchhhhccCcc--chhhHHHHHHHHHHHHHHHHHHhhccC---CCCCCcCCCCcCCcccccCCHHHHHH
Confidence 7777642 34455667777763 234566778889999999999875421 12345799999999999999999999
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHH-hhcCCCchhhhhhhhCCCCCcchhcc
Q 024654 208 LKVKEIKNGRLAMFSMFGFFVQA-IVTGKGPLENLADHLADPVNNNAWAY 256 (264)
Q Consensus 208 lk~kELkNGRLAMlA~~G~~~Q~-~vtGkgPl~nl~~hla~P~~~n~~~~ 256 (264)
+|+|||||||||||||+||++|+ ++||++|++||.+||+||++||++..
T Consensus 186 ~k~kELkNGRLAMiA~lGf~vQ~~~~~G~gPl~nL~~hladp~~~N~~~~ 235 (243)
T PLN00099 186 YKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDI 235 (243)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhhhhcCCCChHHHHHHHhcCCccCceeee
Confidence 99999999999999999999999 67999999999999999999999653
No 10
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
Probab=100.00 E-value=1.8e-58 Score=416.37 Aligned_cols=176 Identities=37% Similarity=0.611 Sum_probs=149.2
Q ss_pred CCCCccccCCCCCCCCCCCCCCCCCCCCCCCCccCCCHHHHHHHHHHHHhhhhhhHhhhchhhhhhhhhhcCcccCchhh
Q 024654 50 GPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVW 129 (264)
Q Consensus 50 g~~r~~~lgpf~~~~P~~L~G~~pGd~gfDPlGLs~d~e~~~~~ReaELkHGR~AMLA~lG~l~pE~l~~~G~~f~~~~w 129 (264)
..+|++|+ |+. ++|+||||++||||||||+||++|+++++||||+|||||||||||++||++||+++. +.|
T Consensus 32 ~~~r~~W~-P~~-~~P~~Ldg~~pGd~GFDPlgl~~~~~~~~~~r~aEl~hGR~AMla~~G~~~~E~~~~-------P~w 102 (246)
T PLN00100 32 ARARPMWY-PGA-TAPKYLDGTMAGDYGFDPLRLGANPETLPYLQEAELMNGRWAMAATAGILFTDAVGL-------PKF 102 (246)
T ss_pred cCCCcccC-CCC-CCCCCCCCCCCCCcCCCccccCCCHHHHHHHHHHHhhcchHHHHHHhhhhHHHHhcc-------cch
Confidence 46899999 897 999999999999999999999999999999999999999999999999999998752 348
Q ss_pred hhcccccccCCCcccCCCCchhhHHHHHHHHHHHHHHHHhhhceeccCCCCCCCCCCCCCCC-CCCCCCCCCCHHHHHHH
Q 024654 130 FKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGG-SFDPLGLADDPEAFAEL 208 (264)
Q Consensus 130 ~~ag~~~~~~g~l~~~~~p~~~~aq~i~~~~~~~~~l~g~vE~~r~~gg~~g~~~d~~yPGg-~FDPLgl~~dpe~~~~l 208 (264)
+++|... |..+ +.+++++|+++|+++|.+|+.+-. ..++..+||+ .||||||.+ +++
T Consensus 103 ~~ag~~~-------~~~~--------~~~l~~iqill~g~~E~~r~~~~~--~~g~~~~pg~~~FDPLGl~~-----~~~ 160 (246)
T PLN00100 103 WEAGAEK-------YGLD--------LQTLVLIQVVVMAVLEAARYRGFM--KTGESGVLSFFPFDPTGMDS-----PEM 160 (246)
T ss_pred hhcchhh-------hccc--------hhHHHHHHHHHHHHHhhhcccccc--cccccCCCCCCCCCcccccH-----HHH
Confidence 8876532 2111 134567788899999999976421 1123345777 499999963 579
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHhhcCCCchhhhhhhhCCCCCcchhcc
Q 024654 209 KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAY 256 (264)
Q Consensus 209 k~kELkNGRLAMlA~~G~~~Q~~vtGkgPl~nl~~hla~P~~~n~~~~ 256 (264)
|+||||||||||+||+||++|+++||++|++||.+|++||+|||++++
T Consensus 161 K~KEIkNGRLAMlA~lG~~~Q~~vTG~gPlenL~~hladP~~~ni~~~ 208 (246)
T PLN00100 161 KVKEVKNGRLAMLAFLGMVSQYAVTGKSPLEGLKAHMANPGHVNIFTS 208 (246)
T ss_pred HHHHHhhhhHHHHHHHHHhhhhhhcCCChHHHHHHhccCCcccccccC
Confidence 999999999999999999999999999999999999999999999874
No 11
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
Probab=100.00 E-value=3e-53 Score=384.52 Aligned_cols=171 Identities=41% Similarity=0.691 Sum_probs=141.2
Q ss_pred CCCccccCCCCC-----CCCCCCCCCCCCCCCCCCCccCCCHHHHHHHHHHHHhhhhhhHhhhchhhhhhhhhhcCcccC
Q 024654 51 PDRVKYLGPFSG-----EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG 125 (264)
Q Consensus 51 ~~r~~~lgpf~~-----~~P~~L~G~~pGd~gfDPlGLs~d~e~~~~~ReaELkHGR~AMLA~lG~l~pE~l~~~G~~f~ 125 (264)
.+|..|+ |+.. .+|+||||++||||||||+||++|+|+++|||++|||||||||||++||++||++. |
T Consensus 49 ~~~k~w~-p~~~~~~~~~~P~~l~g~~PGd~GFDPlgl~~d~e~~~~~r~~El~hGR~AMLa~~G~~v~e~l~--g---- 121 (255)
T PLN00170 49 QPKKSWI-PAVKGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS--G---- 121 (255)
T ss_pred CCCcccc-CCCCCCcccCCcccccccCCCCCCcCccccCCCHHHHHHHHHHHhhccHHHHHHHHhhhhHHHcc--C----
Confidence 4555666 4431 47999999999999999999999999999999999999999999999999999874 2
Q ss_pred chhhhhcccccccCCCcccCCCCchhhHHHHHHHHHHHHHHHHhhhceeccC--CCCC------------------CCCC
Q 024654 126 EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG--GPLG------------------EVTD 185 (264)
Q Consensus 126 ~~~w~~ag~~~~~~g~l~~~~~p~~~~aq~i~~~~~~~~~l~g~vE~~r~~g--g~~g------------------~~~d 185 (264)
..||++|.+. .+. .| ..+.+++++|+++||++|.+|+++ .|.+ ..++
T Consensus 122 -~~w~~aG~~~------~~~-~p-----~~~~~l~~~q~~lmg~~E~~R~~~~~~P~~~~~~~~~p~~~~~~~f~~~~g~ 188 (255)
T PLN00170 122 -IPWFEAGADP------GAI-AP-----FSFGSLLGTQLLLMGWVESKRWVDFFNPDSQSVEWATPWSRTAENFANATGL 188 (255)
T ss_pred -CChhhCCccc------ccc-Cc-----cchHHHHHHHHHHhhhhhheeeccccCCcccccccccccccccccccccCCC
Confidence 2499997641 111 12 224568899999999999999865 1110 1235
Q ss_pred CCCCCCC-CCCCCCCC---------CHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhcCCCchhhhh
Q 024654 186 PLYPGGS-FDPLGLAD---------DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 242 (264)
Q Consensus 186 ~~yPGg~-FDPLgl~~---------dpe~~~~lk~kELkNGRLAMlA~~G~~~Q~~vtGkgPl~nl~ 242 (264)
..||||. ||||||.+ |+++++++|+||||||||||+|++||++|+ .||++||+||.
T Consensus 189 ~~yPGG~~FDPLGl~~~~~~~~~~~d~~~~~~lk~kEIKnGRLAMlA~lGf~~Qa-~~g~~p~~~l~ 254 (255)
T PLN00170 189 QGYPGGKFFDPLGLAGTVKDGVYIPDFEKLERLKLAEIKHARLAMVAMLIFYFEA-GQGKTPLGALG 254 (255)
T ss_pred cccCCCcccCccccccccccccccCCHHHHHHHHHHHHhhhHHHHHHHHhHheee-ccCCCchhhhc
Confidence 6799995 99999985 789999999999999999999999999999 79999999984
No 12
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein. LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.
Probab=100.00 E-value=4.1e-43 Score=296.23 Aligned_cols=149 Identities=46% Similarity=0.774 Sum_probs=116.2
Q ss_pred CCCCCCCCCCCCCCCCCCccCCCHHHHHHHHHHHHhhhhhhHhhhchhhhhhhhhh-cCcc-c-CchhhhhcccccccCC
Q 024654 64 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVK-F-GEAVWFKAGAQIFSEG 140 (264)
Q Consensus 64 ~P~~L~G~~pGd~gfDPlGLs~d~e~~~~~ReaELkHGR~AMLA~lG~l~pE~l~~-~G~~-f-~~~~w~~ag~~~~~~g 140 (264)
+|+||||+++||+||||+||++++ +++||||+|||||||||||++|++++|+++. ++.. + ..+.|++++
T Consensus 1 ~p~~l~G~~~~~~gfDPlgl~~~~-~~~~~R~aEl~hGR~AMLa~~g~~v~e~~~~~~~~~~~~~~~~~~~~~------- 72 (156)
T PF00504_consen 1 PPPYLDGSVPGDYGFDPLGLSSDP-DFAWYREAELKHGRVAMLAFVGALVQEAGTGFPGVPSFLGQPAWAEAG------- 72 (156)
T ss_dssp --TTTTSTSTTSTSSSTTTTTTSH-HHHHHHHHHHHHHHHHHHHHHHHHHCHCHSTTTSSS-SSTSSSSSSTT-------
T ss_pred CcccccCCCCCCCCCChhhcccch-hHHHHHHhHHHhhhhhhhhhHHHHHHHHhccCCcccccccccchhhhh-------
Confidence 699999999999999999999888 9999999999999999999999999999854 2211 1 112233221
Q ss_pred CcccCCCCchhhHHHHHHHHHHHHHHHHhhhceeccCCCCC---CCCCCCCCCCC-CCCCCCCCCHHHHHHHHHHHHhhh
Q 024654 141 GLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLG---EVTDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNG 216 (264)
Q Consensus 141 ~l~~~~~p~~~~aq~i~~~~~~~~~l~g~vE~~r~~gg~~g---~~~d~~yPGg~-FDPLgl~~dpe~~~~lk~kELkNG 216 (264)
. .+....+|++++++++++|.++....... ...+..|||+. |||||+.+|+++++++|++|||||
T Consensus 73 --------~---~~~~~~~~~~~l~~ig~~e~~~~~~~~~~~~~~~~~~~~pG~~~~dplgl~~~~~~~~~~~~~El~NG 141 (156)
T PF00504_consen 73 --------G---IPVPAAGWAQILLFIGALEPWRQQGVPEPGEGGGKDGRYPGDLGFDPLGLAKDPEEKEFMQLAELKNG 141 (156)
T ss_dssp --------S---SSSHSHHHHHHHHHHHHHHHHHHHHTTTCCTTSSSSSSSSSSSSSSTSSTSSSCHSHHCHHHHHHHHH
T ss_pred --------h---hhhhhHHHHHHHHHHhHhhhhhcccccCCcccccccccCccccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 0 01122456678899999999876542211 13456899995 999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHh
Q 024654 217 RLAMFSMFGFFVQAI 231 (264)
Q Consensus 217 RLAMlA~~G~~~Q~~ 231 (264)
|||||||+|+++|+.
T Consensus 142 RlAMla~~g~~~~e~ 156 (156)
T PF00504_consen 142 RLAMLAFAGFVAQEA 156 (156)
T ss_dssp HHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999999983
No 13
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional
Probab=100.00 E-value=3.9e-42 Score=305.16 Aligned_cols=161 Identities=29% Similarity=0.362 Sum_probs=120.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCccCC-CHHHHHHHHHHHHhhhhhhHhhhchhhhhhhhhhcCcccCchhhhhcccccc
Q 024654 59 PFSGEPPSYLTGEFPGDYGWDTAGLSA-DPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIF 137 (264)
Q Consensus 59 pf~~~~P~~L~G~~pGd~gfDPlGLs~-d~e~~~~~ReaELkHGR~AMLA~lG~l~pE~l~~~G~~f~~~~w~~ag~~~~ 137 (264)
||. +.|..|+|. .||++|||+||++ ++++++|||++|||||||||||++|+++||.++.+|..+ ++
T Consensus 42 pf~-~~~p~l~g~-~Gd~~fDPlgl~~~~~~~~~~~r~~ElkhGR~AMlA~~G~~~~~~~~~pG~~~----~~------- 108 (209)
T PLN00089 42 GFA-AKEFMFIGK-TGSKKFDPLGLAEKVEEFLPWFRESELKHGRAAMLAVAGFIAPDFVRIPGEAY----SF------- 108 (209)
T ss_pred ccc-cCCccccCC-CCccCcCCccCCCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCccc----cc-------
Confidence 676 556689999 9999999999985 678899999999999999999999999999987665311 11
Q ss_pred cCCCcccCCCCchhhH-HHHH-HH-HHHHHHHHHhhhceeccCCCCCCCCCCCCCCC-CCCCCCCC-CCHHHHHHHHHHH
Q 024654 138 SEGGLDYLGNPSLIHA-QSIL-AI-WACQVVLMGAVEGYRIAGGPLGEVTDPLYPGG-SFDPLGLA-DDPEAFAELKVKE 212 (264)
Q Consensus 138 ~~g~l~~~~~p~~~~a-q~i~-~~-~~~~~~l~g~vE~~r~~gg~~g~~~d~~yPGg-~FDPLgl~-~dpe~~~~lk~kE 212 (264)
.+.|+...+ +.++ .. +.+.+++||++|.............+..|||| .||||||. +|+++++++|++|
T Consensus 109 -------~~~p~~~~a~~~~~~~g~~~Qi~~~ig~~E~~~~~~~~~~~~~~~~~PGd~gfdplgl~~~d~~~~~~~~~~E 181 (209)
T PLN00089 109 -------AAIPKTIDAHDALLKSGAMIQIFAWIGFVDLAVSAPAAAAAAEFDRTPGDFGFDLLALYPKDAAKMEKKKDKE 181 (209)
T ss_pred -------cccccHHHHHHhhcccccHHHHHHHHHHHHHHHhhccccccccCCCCCCCcCccccccCCCCHHHHHHHHHHH
Confidence 112322211 1122 22 34556679999953211111111123478999 49999994 6899999999999
Q ss_pred HhhhhHHHHHHHHHHHHHhhcCCCchh
Q 024654 213 IKNGRLAMFSMFGFFVQAIVTGKGPLE 239 (264)
Q Consensus 213 LkNGRLAMlA~~G~~~Q~~vtGkgPl~ 239 (264)
|||||||||||+||++|+++||+++++
T Consensus 182 l~NGRlAM~a~~g~~~~~~~tg~g~~~ 208 (209)
T PLN00089 182 LKNGRLAMVAIGGIATGSAITGHGFPY 208 (209)
T ss_pred HhhhHHHHHHHHHHHHHHHHcCCCCCc
Confidence 999999999999999999999998764
No 14
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional
Probab=100.00 E-value=7.2e-35 Score=257.58 Aligned_cols=144 Identities=22% Similarity=0.360 Sum_probs=102.8
Q ss_pred CCCCccC--CCHHHHHHHHHHHHhhhhhhHhhhchhhhhhhhhhcCcccCchhhhhcccccccCCCcccCCCCchhh-HH
Q 024654 78 WDTAGLS--ADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIH-AQ 154 (264)
Q Consensus 78 fDPlGLs--~d~e~~~~~ReaELkHGR~AMLA~lG~l~pE~l~~~G~~f~~~~w~~ag~~~~~~g~l~~~~~p~~~~-aq 154 (264)
|||+||+ .|+++++|||++|||||||||||++||+++|+ |++|+... + + .+..+.+.|.... .+
T Consensus 47 fDPlgl~~~~~~~~~~~~r~~ElkhGRlAMlA~~G~~~~~~----g~~~Pg~~--~-----~--~g~~~~~~p~~~~a~~ 113 (202)
T PLN00120 47 FDPLGLVDDGDQEKFDRLRYVEIKHGRISMLAVVGYLVTEA----GIRLPGDI--D-----Y--SGTSFSDIPNGFAALD 113 (202)
T ss_pred CCCCccCCCCCHHHHHHHHHHHhhcccHHHHhhccceeecc----cccCCCcc--c-----c--ccccccccccchhhhh
Confidence 9999997 47899999999999999999999999999996 33332110 0 0 0112222232221 12
Q ss_pred HHH-HHHHHHHHHHHhhhceeccCCCCCCCCCCCCCCCC---CCCCCCCC-CHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 024654 155 SIL-AIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGS---FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGFFVQ 229 (264)
Q Consensus 155 ~i~-~~~~~~~~l~g~vE~~r~~gg~~g~~~d~~yPGg~---FDPLgl~~-dpe~~~~lk~kELkNGRLAMlA~~G~~~Q 229 (264)
.++ ..|++.+++++++|.++... +. ++..+|||. +++|||.. |+|+++++|+|||||||||||||+||++|
T Consensus 114 ~vp~~g~~qi~~~ig~~E~~~~~~-~~---~~~~~pGd~~~g~~d~gfdp~~~~~~~~~~~~EL~NGRLAMiai~G~~~q 189 (202)
T PLN00120 114 AIPTAGLLQILAFIGFLELAVMKD-IT---GEGEFVGDFRNGYIDFGWDSFDEETKLKKRAIELNQGRAAQMGILALMVH 189 (202)
T ss_pred hcchhHHHHHHHHHHHHHHHhhcc-cc---cCCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233 44666688899999765432 11 123678862 23566653 88999999999999999999999999999
Q ss_pred HhhcCCCch
Q 024654 230 AIVTGKGPL 238 (264)
Q Consensus 230 ~~vtGkgPl 238 (264)
+.++|+.|+
T Consensus 190 e~l~g~~~~ 198 (202)
T PLN00120 190 EQLGVELPI 198 (202)
T ss_pred HHccCCCcC
Confidence 999999886
No 15
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
Probab=99.57 E-value=2.6e-15 Score=137.90 Aligned_cols=56 Identities=36% Similarity=0.625 Sum_probs=51.8
Q ss_pred CCCCCCC-CCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhcCCCchhh
Q 024654 185 DPLYPGG-SFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 240 (264)
Q Consensus 185 d~~yPGg-~FDPLgl~~dpe~~~~lk~kELkNGRLAMlA~~G~~~Q~~vtGkgPl~n 240 (264)
|..+||| +||||||.+|+++++++|++||||||+||+|++|+++|+++++.+++++
T Consensus 76 dG~~pGD~GFDPlgl~~~~~~~~~~r~aEl~HGR~AMLA~~G~~~~e~l~~~g~~~~ 132 (267)
T PLN00098 76 DGSLPGDFGFDPLGLGSDPELLKWFAQAELMHSRWAMLAVAGILIPECLERLGFIEN 132 (267)
T ss_pred CCCCCCCCCcCccccCCCHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCcccc
Confidence 5578999 5999999999999999999999999999999999999999998887764
No 16
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional
Probab=99.57 E-value=2.2e-15 Score=137.26 Aligned_cols=54 Identities=39% Similarity=0.692 Sum_probs=50.9
Q ss_pred CCCCCCC-CCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhcCCCch
Q 024654 185 DPLYPGG-SFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 238 (264)
Q Consensus 185 d~~yPGg-~FDPLgl~~dpe~~~~lk~kELkNGRLAMlA~~G~~~Q~~vtGkgPl 238 (264)
|..+||| +||||||.+|+++++++|++|||||||||+|++|+++|+++|+++++
T Consensus 67 dG~~PGD~GFDPlGl~~d~~~~~~~r~aEl~hGRlAMla~~G~l~~e~l~~~g~~ 121 (250)
T PLN00101 67 NGSLPGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGII 121 (250)
T ss_pred CCCCCCccCCCccccCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCCCCc
Confidence 5578999 59999999999999999999999999999999999999999998876
No 17
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
Probab=99.49 E-value=2.3e-14 Score=130.79 Aligned_cols=57 Identities=25% Similarity=0.323 Sum_probs=51.9
Q ss_pred CCCCCCCCCCCCCCCCCccCCCHHHHHHHHHHHHhhhhhhHhhhchhhhhhhhhhcC
Q 024654 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNG 121 (264)
Q Consensus 65 P~~L~G~~pGd~gfDPlGLs~d~e~~~~~ReaELkHGR~AMLA~lG~l~pE~l~~~G 121 (264)
+..+++.+|||++|||+||++|++++++++..||||||+||+|++|+++||+++..|
T Consensus 172 ~~~~~~~yPGd~~FDPlGl~~d~~~~~~~k~kEikNGRLAMlA~~G~~~q~~vtg~G 228 (252)
T PLN00147 172 LEGLEPGYPGGPLFNPLGLAKDIENAHDWKLKEIKNGRLAMVAMLGFFVQASVTHTG 228 (252)
T ss_pred ccccCCCCcccccCCccccCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCC
Confidence 445667799999999999999999999999999999999999999999999986544
No 18
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
Probab=99.46 E-value=3.8e-14 Score=130.06 Aligned_cols=52 Identities=27% Similarity=0.425 Sum_probs=48.4
Q ss_pred CCCCCCCCCCCCccCCCHHHHHHHHHHHHhhhhhhHhhhchhhhhhhhhhcC
Q 024654 70 GEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNG 121 (264)
Q Consensus 70 G~~pGd~gfDPlGLs~d~e~~~~~ReaELkHGR~AMLA~lG~l~pE~l~~~G 121 (264)
..+|||++|||+||++|+|+++++|..||||||+||+|++||++|++++..|
T Consensus 187 ~~yPG~~~fDPlGl~~~~e~~~~~k~~EiknGRLAM~A~~G~~~q~~~tg~g 238 (262)
T PLN00048 187 PAYPGGPFFNPLGFGKDEKSMKELKLKEVKNGRLAMLAILGYFIQALVTGVG 238 (262)
T ss_pred cccccccccCccccccchHHHHHHHHHHHhhhHHHHHHhhhHhhhhhhcCCC
Confidence 3599999999999999999999999999999999999999999999986544
No 19
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
Probab=99.45 E-value=6.9e-14 Score=127.74 Aligned_cols=53 Identities=38% Similarity=0.594 Sum_probs=48.7
Q ss_pred CCCCCCC-CCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhcCCCc
Q 024654 185 DPLYPGG-SFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 237 (264)
Q Consensus 185 d~~yPGg-~FDPLgl~~dpe~~~~lk~kELkNGRLAMlA~~G~~~Q~~vtGkgP 237 (264)
|..+||| .||||||.+|+|+++++|.+||+|||+||+|++|+++|+++||...
T Consensus 71 ~g~~PGd~GFDPlgl~~d~e~~~~~r~~El~hGR~AMLa~~G~~v~e~l~g~~w 124 (255)
T PLN00170 71 DGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPW 124 (255)
T ss_pred cccCCCCCCcCccccCCCHHHHHHHHHHHhhccHHHHHHHHhhhhHHHccCCCh
Confidence 4578999 4999999999999999999999999999999999999999998643
No 20
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional
Probab=99.44 E-value=9.5e-14 Score=123.81 Aligned_cols=52 Identities=27% Similarity=0.479 Sum_probs=47.5
Q ss_pred CCCCCCCCCCCCcc-CCCHHHHHHHHHHHHhhhhhhHhhhchhhhhhhhhhcC
Q 024654 70 GEFPGDYGWDTAGL-SADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNG 121 (264)
Q Consensus 70 G~~pGd~gfDPlGL-s~d~e~~~~~ReaELkHGR~AMLA~lG~l~pE~l~~~G 121 (264)
+..|||+||||+|| .+|+++++++|..||||||+||+|++|++++|+++..|
T Consensus 153 ~~~PGd~gfdplgl~~~d~~~~~~~~~~El~NGRlAM~a~~g~~~~~~~tg~g 205 (209)
T PLN00089 153 DRTPGDFGFDLLALYPKDAAKMEKKKDKELKNGRLAMVAIGGIATGSAITGHG 205 (209)
T ss_pred CCCCCCcCccccccCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCC
Confidence 47899999999999 56899999999999999999999999999999886444
No 21
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
Probab=99.43 E-value=1.1e-13 Score=129.88 Aligned_cols=54 Identities=31% Similarity=0.473 Sum_probs=49.3
Q ss_pred CCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhcCCCc
Q 024654 184 TDPLYPGG-SFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 237 (264)
Q Consensus 184 ~d~~yPGg-~FDPLgl~~dpe~~~~lk~kELkNGRLAMlA~~G~~~Q~~vtGkgP 237 (264)
.|..+||| +||||||.+|+++++++|.+||||||+||+|++|+++|+++++.+.
T Consensus 123 LdG~lpGD~GFDPLGL~~dp~~l~~~reaELkHGR~AMLA~~G~lv~e~l~~~g~ 177 (324)
T PLN00171 123 LTGELPGDYGFDIAGLGKDPVAFDKYFNFEILHARWAMLAALGVVIPEVLDLFGA 177 (324)
T ss_pred cCCCCCcccCCCccccccCHHHHHHHHHHHhccchHHHHHHhhHHHHHHhccCCc
Confidence 46678999 5999999999999999999999999999999999999999886654
No 22
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
Probab=99.43 E-value=1.3e-13 Score=125.32 Aligned_cols=53 Identities=32% Similarity=0.505 Sum_probs=49.1
Q ss_pred CCCCCCC-CCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhcCCCc
Q 024654 185 DPLYPGG-SFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 237 (264)
Q Consensus 185 d~~yPGg-~FDPLgl~~dpe~~~~lk~kELkNGRLAMlA~~G~~~Q~~vtGkgP 237 (264)
|...||| +||||||++|+++++++|.+||||||+||+|++|+++|+++++.+.
T Consensus 58 dG~~pGD~GfDPlGl~~~~~~~~~~r~aEl~hGR~AMLa~~G~lv~e~l~~~g~ 111 (244)
T PLN00097 58 DGSLPCDYGFDPLNLGADPEMLKWFVQAELMHARWAMLGLAGCVAPELLTKIGM 111 (244)
T ss_pred CCCCCCCCCCCccccCcCHHHHHHHHHHHHhcchHHHHHHhhhhHHHHhcCCCc
Confidence 5567999 5999999999999999999999999999999999999999998754
No 23
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional
Probab=99.42 E-value=1.3e-13 Score=127.76 Aligned_cols=51 Identities=33% Similarity=0.485 Sum_probs=47.8
Q ss_pred CCCCCCCCCCCccCCCHHHHHHHHHHHHhhhhhhHhhhchhhhhhhhhhcC
Q 024654 71 EFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNG 121 (264)
Q Consensus 71 ~~pGd~gfDPlGLs~d~e~~~~~ReaELkHGR~AMLA~lG~l~pE~l~~~G 121 (264)
.+|||++|||+||++|+++++++|+.|||||||||+|++||++|+.++..|
T Consensus 213 ~yPGg~~FDPlGl~~d~e~~~~~k~kEIkNGRLAMlA~lG~~vq~~vtg~G 263 (286)
T PLN00187 213 LYPGGKFFDPLGLAADPEKKETLQLAEIKHARLAMVAFLGFAVQAAATGKG 263 (286)
T ss_pred CCCccccccccccCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCC
Confidence 489999999999999999999999999999999999999999999986544
No 24
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional
Probab=99.41 E-value=1.9e-13 Score=125.44 Aligned_cols=52 Identities=31% Similarity=0.602 Sum_probs=48.0
Q ss_pred CCCCCCC-CCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhcCCC
Q 024654 185 DPLYPGG-SFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 236 (264)
Q Consensus 185 d~~yPGg-~FDPLgl~~dpe~~~~lk~kELkNGRLAMlA~~G~~~Q~~vtGkg 236 (264)
|..+||| +||||||++||++++++|..||||||+||+|++|+++|+++++.+
T Consensus 67 dg~~pGD~GfDPlGls~dp~~~~~~re~El~hGR~AMLa~~G~i~~e~l~~~g 119 (262)
T PLN00025 67 TGEFPGDYGWDTAGLSADPETFARNRELEVIHARWAMLGALGCVTPELLAKNG 119 (262)
T ss_pred cCcCCCCCCCCccccccCHHHHHHHHHHHHhccHHHHHHHhhhhhHHHhhcCC
Confidence 5567999 599999999999999999999999999999999999999998654
No 25
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
Probab=99.40 E-value=2.6e-13 Score=123.35 Aligned_cols=50 Identities=36% Similarity=0.560 Sum_probs=46.7
Q ss_pred CCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhc
Q 024654 184 TDPLYPGG-SFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVT 233 (264)
Q Consensus 184 ~d~~yPGg-~FDPLgl~~dpe~~~~lk~kELkNGRLAMlA~~G~~~Q~~vt 233 (264)
.|..+||| +||||||.+|+|+++++|.+||||||+||+|++|+++|++++
T Consensus 48 Ldg~~pGd~GFDPlgl~~~~~~~~~~r~aEl~hGR~AMla~~G~~~~E~~~ 98 (246)
T PLN00100 48 LDGTMAGDYGFDPLRLGANPETLPYLQEAELMNGRWAMAATAGILFTDAVG 98 (246)
T ss_pred CCCCCCCCcCCCccccCCCHHHHHHHHHHHhhcchHHHHHHhhhhHHHHhc
Confidence 46688999 599999999999999999999999999999999999999975
No 26
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
Probab=99.34 E-value=8.5e-13 Score=120.06 Aligned_cols=51 Identities=33% Similarity=0.503 Sum_probs=47.1
Q ss_pred CCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhcC
Q 024654 184 TDPLYPGG-SFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTG 234 (264)
Q Consensus 184 ~d~~yPGg-~FDPLgl~~dpe~~~~lk~kELkNGRLAMlA~~G~~~Q~~vtG 234 (264)
.|..+||| +||||||++++++++++|.+||||||+||+|++|+++|++++.
T Consensus 57 Ldg~~pgd~GfDPlgls~~~~~~~~~r~~ELkHGR~AMLAv~G~i~~E~l~~ 108 (243)
T PLN00099 57 LDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGL 108 (243)
T ss_pred CCCCCCcccCCCccccccCHHHHHHHHHHhccCCcHHHHHHhhHHHHHHhcc
Confidence 46678999 6999999999999999999999999999999999999999753
No 27
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein. LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.
Probab=99.32 E-value=9.4e-13 Score=111.20 Aligned_cols=49 Identities=39% Similarity=0.538 Sum_probs=46.6
Q ss_pred CCCCCCCCCCCCCCCccCCCHHHHHHHHHHHHhhhhhhHhhhchhhhhh
Q 024654 67 YLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE 115 (264)
Q Consensus 67 ~L~G~~pGd~gfDPlGLs~d~e~~~~~ReaELkHGR~AMLA~lG~l~pE 115 (264)
+.++..|||++|||+||.+|++...++|.+||+|||+||+|++|++++|
T Consensus 107 ~~~~~~pG~~~~dplgl~~~~~~~~~~~~~El~NGRlAMla~~g~~~~e 155 (156)
T PF00504_consen 107 GKDGRYPGDLGFDPLGLAKDPEEKEFMQLAELKNGRLAMLAFAGFVAQE 155 (156)
T ss_dssp SSSSSSSSSSSSSTSSTSSSCHSHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4678899999999999999999999999999999999999999999998
No 28
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional
Probab=99.08 E-value=1e-10 Score=103.95 Aligned_cols=49 Identities=37% Similarity=0.496 Sum_probs=39.0
Q ss_pred CCCCCCCCCC--CCccCC-CHHHHHHHHHHHHhhhhhhHhhhchhhhhhhhh
Q 024654 70 GEFPGDYGWD--TAGLSA-DPETFAKNRELEVIHCRWAMLGALGCVFPELLA 118 (264)
Q Consensus 70 G~~pGd~gfD--PlGLs~-d~e~~~~~ReaELkHGR~AMLA~lG~l~pE~l~ 118 (264)
+..||||+++ ++|+.. |+|+.+++|..||||||+||+|++|++++|++.
T Consensus 142 ~~~pGd~~~g~~d~gfdp~~~~~~~~~~~~EL~NGRLAMiai~G~~~qe~l~ 193 (202)
T PLN00120 142 GEFVGDFRNGYIDFGWDSFDEETKLKKRAIELNQGRAAQMGILALMVHEQLG 193 (202)
T ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 5789954322 333321 789999999999999999999999999999874
No 29
>PLN00084 photosystem II subunit S (PsbS); Provisional
Probab=98.10 E-value=2.4e-06 Score=74.30 Aligned_cols=50 Identities=36% Similarity=0.449 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhc-CCCchhhhhhhhCCCCCc
Q 024654 202 PEAFAELKVKEIKNGRLAMFSMFGFFVQAIVT-GKGPLENLADHLADPVNN 251 (264)
Q Consensus 202 pe~~~~lk~kELkNGRLAMlA~~G~~~Q~~vt-GkgPl~nl~~hla~P~~~ 251 (264)
+....|.|..|+.||||||++|+--++-|++| |+||+.||.....-|+..
T Consensus 129 ~~~vrEqK~nE~~NGRLAMLGF~~alitE~lTgGqGiL~Ql~~ETGvPi~e 179 (214)
T PLN00084 129 DDQVREQKPYELFNGRLAMLGFAFAIAGDAVTGGMGPLEQFNGETGVPVID 179 (214)
T ss_pred HHHHHhccchhhhhhHHHHHHHHHHHHHHHHhCCcchHHHhccccCCcchh
Confidence 34577889999999999999999999999999 999999999888877754
No 30
>PHA02337 putative high light inducible protein
Probab=98.02 E-value=5.4e-06 Score=54.36 Aligned_cols=28 Identities=32% Similarity=0.239 Sum_probs=25.7
Q ss_pred HHHHhhhhHHHHHHHHHHHHHhhcCCCc
Q 024654 210 VKEIKNGRLAMFSMFGFFVQAIVTGKGP 237 (264)
Q Consensus 210 ~kELkNGRLAMlA~~G~~~Q~~vtGkgP 237 (264)
..|+-||||||++|...+.-+++||++.
T Consensus 4 ~aE~~NGRlAMiGfv~~~~~e~~tGq~i 31 (35)
T PHA02337 4 EAEIFNGWLAMIGFVAAVGAYATTGQII 31 (35)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHhCCCC
Confidence 4699999999999999999999999863
No 31
>PLN00014 light-harvesting-like protein 3; Provisional
Probab=97.50 E-value=7.4e-05 Score=67.78 Aligned_cols=37 Identities=30% Similarity=0.512 Sum_probs=33.4
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHhhcCCCchhhhhhh
Q 024654 208 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADH 244 (264)
Q Consensus 208 lk~kELkNGRLAMlA~~G~~~Q~~vtGkgPl~nl~~h 244 (264)
+...|+-|||+|||+|+..++-|++||++.+.++.+.
T Consensus 159 l~~aE~lNGR~AMiGFvaal~~E~~TG~gll~Qlg~f 195 (250)
T PLN00014 159 LPEAELLNGRAAMVGFFMAYLVDSLTGVGLVDQMGNF 195 (250)
T ss_pred CchhHhhhhHHHHHHHHHHHHHHHHcCCcHHHHHhhh
Confidence 4558999999999999999999999999999998653
No 32
>PHA02337 putative high light inducible protein
Probab=97.21 E-value=0.00023 Score=46.77 Aligned_cols=27 Identities=22% Similarity=0.203 Sum_probs=24.0
Q ss_pred HHHHHhhhhhhHhhhchhhhhhhhhhc
Q 024654 94 RELEVIHCRWAMLGALGCVFPELLARN 120 (264)
Q Consensus 94 ReaELkHGR~AMLA~lG~l~pE~l~~~ 120 (264)
..+|..+||+||+|++-.+..|+++..
T Consensus 3 ~~aE~~NGRlAMiGfv~~~~~e~~tGq 29 (35)
T PHA02337 3 PEAEIFNGWLAMIGFVAAVGAYATTGQ 29 (35)
T ss_pred cHHHHHhhHHHHHHHHHHHHHHHHhCC
Confidence 469999999999999999999988643
No 33
>PLN00014 light-harvesting-like protein 3; Provisional
Probab=94.86 E-value=0.013 Score=53.47 Aligned_cols=28 Identities=29% Similarity=0.353 Sum_probs=24.7
Q ss_pred HHHHHhhhhhhHhhhchhhhhhhhhhcC
Q 024654 94 RELEVIHCRWAMLGALGCVFPELLARNG 121 (264)
Q Consensus 94 ReaELkHGR~AMLA~lG~l~pE~l~~~G 121 (264)
.++|+.+||+||+|++-.++.|++...|
T Consensus 160 ~~aE~lNGR~AMiGFvaal~~E~~TG~g 187 (250)
T PLN00014 160 PEAELLNGRAAMVGFFMAYLVDSLTGVG 187 (250)
T ss_pred chhHhhhhHHHHHHHHHHHHHHHHcCCc
Confidence 5799999999999999999999886444
No 34
>PLN00084 photosystem II subunit S (PsbS); Provisional
Probab=90.72 E-value=0.16 Score=44.66 Aligned_cols=35 Identities=20% Similarity=0.284 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHhhhhhhHhhhchhhhhhhhh-hcCc
Q 024654 88 ETFAKNRELEVIHCRWAMLGALGCVFPELLA-RNGV 122 (264)
Q Consensus 88 e~~~~~ReaELkHGR~AMLA~lG~l~pE~l~-~~G~ 122 (264)
...+..+.-|+.+||+||||++--++.|+++ ..|+
T Consensus 130 ~~vrEqK~nE~~NGRLAMLGF~~alitE~lTgGqGi 165 (214)
T PLN00084 130 DQVREQKPYELFNGRLAMLGFAFAIAGDAVTGGMGP 165 (214)
T ss_pred HHHHhccchhhhhhHHHHHHHHHHHHHHHHhCCcch
Confidence 4567778899999999999999999999987 3443
No 35
>PLN02449 ferrochelatase
Probab=51.48 E-value=11 Score=38.12 Aligned_cols=21 Identities=29% Similarity=0.496 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHhhcCCCch
Q 024654 218 LAMFSMFGFFVQAIVTGKGPL 238 (264)
Q Consensus 218 LAMlA~~G~~~Q~~vtGkgPl 238 (264)
+||+||+.+++-++++|+||+
T Consensus 463 ~~~~~~~~~~~~~~~~~~~~~ 483 (485)
T PLN02449 463 AAMLAVLLLLVLEVTSGFGNL 483 (485)
T ss_pred hHHHHHHHHHHHHHHcCCCcC
Confidence 999999999999999999997
No 36
>PHA00649 hypothetical protein
Probab=24.19 E-value=92 Score=23.84 Aligned_cols=31 Identities=29% Similarity=0.367 Sum_probs=22.2
Q ss_pred CCHHHHHHHHHHHHhhhh-------hhHhhhchhhhhhh
Q 024654 85 ADPETFAKNRELEVIHCR-------WAMLGALGCVFPEL 116 (264)
Q Consensus 85 ~d~e~~~~~ReaELkHGR-------~AMLA~lG~l~pE~ 116 (264)
.+|+.+..+|| .+.|+| -.||+++|..+..+
T Consensus 31 ~~P~~VEEFr~-D~~~~Rr~RKA~D~G~L~~VGL~~~~i 68 (83)
T PHA00649 31 DVPEQVEEFRE-DLRFGRRMRKAADHGFLALVGLVAVAL 68 (83)
T ss_pred CCHHHHHHHHH-HHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 36777777664 677877 35899999877654
No 37
>PHA00003 B internal scaffolding protein
Probab=24.16 E-value=1.4e+02 Score=24.56 Aligned_cols=46 Identities=26% Similarity=0.391 Sum_probs=29.1
Q ss_pred CCCCCCCCCCCCCCCC-CCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHH
Q 024654 177 GGPLGEVTDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFG 225 (264)
Q Consensus 177 gg~~g~~~d~~yPGg~-FDPLgl~~dpe~~~~lk~kELkNGRLAMlA~~G 225 (264)
+.|.....++.+|-+. |||.- .| -+.++.|-.||.+||-+.-==+|
T Consensus 33 ~s~~~g~~~~t~p~gLRrdpvq--~d-~EaERqkr~~iEagk~~c~RrFG 79 (120)
T PHA00003 33 GSSVQGVANGTDPSGLRRDPVQ--QD-LEAERQKRADIEAGKAICARRFG 79 (120)
T ss_pred CCcccCCCCCCCccccccCccc--ch-HHHHHHHHHHHHHHHHHHHHHcC
Confidence 3344444566778874 88853 22 23567888999999987643333
Done!