Query 024654
Match_columns 264
No_of_seqs 254 out of 1176
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 12:05:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024654.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024654hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bhw_A Chlorophyll A-B binding 100.0 5.3E-79 1.8E-83 547.1 17.9 225 40-264 8-232 (232)
2 3pl9_A Chlorophyll A-B binding 100.0 1.1E-65 3.9E-70 461.8 7.4 194 47-256 5-241 (243)
3 2wsc_2 LHCA2, type II chloroph 100.0 1.2E-63 4.1E-68 455.3 -0.2 194 45-257 56-266 (269)
4 2wsc_4 Chlorophyll A-B binding 100.0 5.5E-63 1.9E-67 447.6 -1.2 191 45-258 44-249 (251)
5 2wsc_3 LHCA3, type II chloroph 100.0 7E-62 2.4E-66 445.1 1.1 199 48-258 51-274 (276)
6 2wsc_1 AT3G54890, LHCA1; photo 100.0 1.4E-59 4.9E-64 422.9 3.9 190 53-256 45-236 (241)
7 3pl9_A Chlorophyll A-B binding 99.4 6.4E-14 2.2E-18 125.9 4.4 50 71-121 172-221 (243)
8 2bhw_A Chlorophyll A-B binding 99.4 2E-13 6.7E-18 122.2 7.1 51 184-234 36-87 (232)
9 2wsc_4 Chlorophyll A-B binding 99.4 2E-14 7E-19 130.0 -1.6 54 185-238 67-121 (251)
10 2wsc_2 LHCA2, type II chloroph 99.4 7.1E-14 2.4E-18 127.5 0.1 53 186-238 79-132 (269)
11 2wsc_3 LHCA3, type II chloroph 99.3 1.3E-13 4.4E-18 126.2 1.0 53 69-121 200-252 (276)
12 2wsc_1 AT3G54890, LHCA1; photo 99.2 8.6E-13 3E-17 118.7 -0.0 50 185-234 59-109 (241)
13 2dpr_A CON-T(K7GLA); conantoxi 42.6 16 0.00053 21.3 2.0 15 87-101 6-20 (26)
14 3nrt_A Putative ryanodine rece 26.8 35 0.0012 26.2 2.4 21 87-107 24-46 (103)
No 1
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*
Probab=100.00 E-value=5.3e-79 Score=547.11 Aligned_cols=225 Identities=94% Similarity=1.560 Sum_probs=213.1
Q ss_pred CCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCccCCCHHHHHHHHHHHHhhhhhhHhhhchhhhhhhhhh
Q 024654 40 KSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 119 (264)
Q Consensus 40 ~~~~~~~~wyg~~r~~~lgpf~~~~P~~L~G~~pGd~gfDPlGLs~d~e~~~~~ReaELkHGR~AMLA~lG~l~pE~l~~ 119 (264)
|+++++++||++||++|+|||+.++|+||||++|||||||||||++|+|+++||||+|||||||||||++||++||++++
T Consensus 8 ~~~~~~~~~~~~~r~~~l~~~~~~~P~~LdG~~pGD~GFDPLGLs~d~e~~~r~ReaELkHGR~AMLA~~G~lv~E~l~~ 87 (232)
T 2bhw_A 8 KVASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGSVFPELLSR 87 (232)
T ss_dssp --CCTTCTTSSTTCCCTTGGGCCSCCTTCCSCSTTCCSCCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCcccCCcccCCCcccccCccccCCccccCCcCCCCCCCCCCcCCCCHHHHHHHHHHHHhccchHHHhhhhhhhHHHhcc
Confidence 34566789999999999999987899999999999999999999999999999999999999999999999999999998
Q ss_pred cCcccCchhhhhcccccccCCCcccCCCCchhhHHHHHHHHHHHHHHHHhhhceeccCCCCCCCCCCCCCCCCCCCCCCC
Q 024654 120 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLA 199 (264)
Q Consensus 120 ~G~~f~~~~w~~ag~~~~~~g~l~~~~~p~~~~aq~i~~~~~~~~~l~g~vE~~r~~gg~~g~~~d~~yPGg~FDPLgl~ 199 (264)
.|++|++++|+++|.++|++++++|+++|.+.++|++.+++++|+++||++|.+|+.+++.++..|+.||||.||||||.
T Consensus 88 ~G~~~~~~~w~~ag~~~~~~~~~~~~~~P~~~~~q~i~~~~~~q~~~~g~~E~~r~~~g~~g~~~d~~~Pg~~fdPlgl~ 167 (232)
T 2bhw_A 88 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLA 167 (232)
T ss_dssp TTCCCSCCSGGGSGGGGGSTTCEEGGGCTTSEEECCHHHHHHHHHHHHHHHHHHHHHEETTEECSSSSCCCTTSCTTCTT
T ss_pred CCcCCcccccccccchhccccchhcccCcchhhHHHHHHHHHHHHHHHHHHHHHhhccCcccccccccCCCcccccchhc
Confidence 99999888999999999999899999999999999999999999999999999998877777777888999999999999
Q ss_pred CCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhcCCCchhhhhhhhCCCCCcchhccccccCCCC
Q 024654 200 DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 264 (264)
Q Consensus 200 ~dpe~~~~lk~kELkNGRLAMlA~~G~~~Q~~vtGkgPl~nl~~hla~P~~~n~~~~~~~~~~~~ 264 (264)
+|+|+++++|++|||||||||+||+|+++|+++||++|++||.+|++||++||+|+++++|+||+
T Consensus 168 ~~~~~~~~~~~~E~~nGRlAM~~~~g~~~~~~~tg~g~~~~l~~~~adP~~~n~~~~~~~~~~~~ 232 (232)
T 2bhw_A 168 DDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 232 (232)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSHHHHHHHHHCTTTSSGGGGTTTTCSCC
T ss_pred cchHHHHHHHHhhhhccchHHHHHHHHHHHHHhcCCChHHHHHHHhcChHHhHHHHHHHhhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999985
No 2
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}
Probab=100.00 E-value=1.1e-65 Score=461.75 Aligned_cols=194 Identities=43% Similarity=0.721 Sum_probs=134.6
Q ss_pred CCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCccCCCHHH-------------------------------------
Q 024654 47 PWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPET------------------------------------- 89 (264)
Q Consensus 47 ~wyg~~r~~~lgpf~~~~P~~L~G~~pGd~gfDPlGLs~d~e~------------------------------------- 89 (264)
.|++++|++|+ |.. ++|+||||++|||||||||||+++||.
T Consensus 5 ~~~~~~r~~w~-pg~-~~P~~LdGslpGD~GfDPlgL~~~pe~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 82 (243)
T 3pl9_A 5 SGFSTDRPLWY-PGA-KAPEYLDGSLVGDYGFDPFGLGKPAEYLQYDYDGLDQNLAKNLAGDIIGTRTESADVKSTSLQP 82 (243)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCccccccc-CCC-CCcccccCCCCCcCCCCccccCCChhhhccccccchhhhhcccccccccccccccccccccccc
Confidence 46789999999 665 899999999999999999999999873
Q ss_pred ------HHHHHHHHHhhhhhhHhhhchhhhhhhhhhcCcccCchhhhhcccccccCCCcccCCCCchhhHHHHHHHHHHH
Q 024654 90 ------FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQ 163 (264)
Q Consensus 90 ------~~~~ReaELkHGR~AMLA~lG~l~pE~l~~~G~~f~~~~w~~ag~~~~~~g~l~~~~~p~~~~aq~i~~~~~~~ 163 (264)
++||||+|||||||||||++||++||+++ |+ .|+++|+++++ ++++|+++|.. +++.+++++|
T Consensus 83 ~~~~~~l~r~ReaELkHGRwAMLAvlG~lvpE~l~--g~-----~W~~aG~~~~~-~g~~y~g~p~~---~~i~~l~~~q 151 (243)
T 3pl9_A 83 YSEVFGLQRFRECELIHGRWAMLATLGALTVEGLT--GI-----TWQDAGKVELI-EGSSYLGQPLP---FSMTTLIWIE 151 (243)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--SC-----CTTTHHHHHHH-SCEEETTEEEC---CCHHHHHHHH
T ss_pred ccchhhhHHHHHhhhhcchhHHHHHHHHHhHHhhc--Cc-----ccccccccccc-cccccccCccc---hhhHHHHHHH
Confidence 78999999999999999999999999985 32 49999987775 46789888763 3456778889
Q ss_pred HHHHHhhhceeccCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhcCCCchhhhhh
Q 024654 164 VVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLAD 243 (264)
Q Consensus 164 ~~l~g~vE~~r~~gg~~g~~~d~~yPGg~FDPLgl~~dpe~~~~lk~kELkNGRLAMlA~~G~~~Q~~vtGkgPl~nl~~ 243 (264)
+++||++|.+|+.+- +..+..||||.||||||.+|+++++++|++|||||||||+||+|+++|+++||+||++||.+
T Consensus 152 v~lmG~~E~~R~~~~---~~~~~~~PG~~FDPLGl~~d~e~~~~~r~~ElknGRlAMla~~g~~~q~~vtG~Gpl~~l~~ 228 (243)
T 3pl9_A 152 VLVIGYIEFQRNAEL---DTEKRLYPGGTFDPLGLASDPEKKPILQLAEIKHARLAMVGFLGFAVQAAVTGKGPLNNWVT 228 (243)
T ss_dssp HHHHHHHHHHHHSCC---CTTTTTCCCGGGCTTCTTCSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred HHHHHHHHHHhhccc---CCccccCCCcchhhccccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 999999999998751 12245799999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCCCcchhcc
Q 024654 244 HLADPVNNNAWAY 256 (264)
Q Consensus 244 hla~P~~~n~~~~ 256 (264)
|++||+|||+|++
T Consensus 229 HladP~~~ni~~~ 241 (243)
T 3pl9_A 229 HLSDPLHTTILDR 241 (243)
T ss_dssp HHHCSGGGSTTTT
T ss_pred HhcCcchhhhhhh
Confidence 9999999999753
No 3
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*
Probab=100.00 E-value=1.2e-63 Score=455.34 Aligned_cols=194 Identities=43% Similarity=0.817 Sum_probs=131.3
Q ss_pred CCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCccCCCHHHHHHHHHHHHhhhhhhHhhhchhhhhhhhhhcCccc
Q 024654 45 GSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 124 (264)
Q Consensus 45 ~~~wyg~~r~~~lgpf~~~~P~~L~G~~pGd~gfDPlGLs~d~e~~~~~ReaELkHGR~AMLA~lG~l~pE~l~~~G~~f 124 (264)
...||+|||++|+ |+. ++|+||+|++||||||||+||++|+|+++||||+|||||||||||++||++||+++..|+.
T Consensus 56 ~~~~~~~~r~~wl-pg~-~~P~~L~G~~pGD~GfDPlGL~~d~e~~~~~r~aElkHGR~AMLA~~G~l~~E~l~~~G~~- 132 (269)
T 2wsc_2 56 VCTVAEPDRPLWF-PGS-TPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGIL- 132 (269)
T ss_dssp ----------------------------------------CCCSCCTTTHHHHHHTHHHHTTTTHHHHHHHHHCCTTSS-
T ss_pred eecccCCCccccc-CCC-CCcccccCcCCCCCCCCccccCCCHHHHHHHHHHHHhcchHHHHHHHHhHhHHhhccCCcc-
Confidence 3458999999999 665 8999999999999999999999999999999999999999999999999999999887764
Q ss_pred CchhhhhcccccccCCCcccCCCCchhhHHHHHHHHHHHHHHHHhhhceeccC----CCCC----------CCCCCCCCC
Q 024654 125 GEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG----GPLG----------EVTDPLYPG 190 (264)
Q Consensus 125 ~~~~w~~ag~~~~~~g~l~~~~~p~~~~aq~i~~~~~~~~~l~g~vE~~r~~g----g~~g----------~~~d~~yPG 190 (264)
..+.|+++|. .+|+.++. .++++|+++||++|.+|+.+ |..+ ...|..|||
T Consensus 133 ~~p~w~~aG~-------~~~~~~~~--------~l~~~qi~liG~~E~~r~~~~~~pG~~g~~p~f~~~~~~~~d~~~PG 197 (269)
T 2wsc_2 133 NTPSWYTAGE-------QEYFTDTT--------TLFIVELVFIGWAEGRRWADILNPGCVNTDPIFPNNKLTGTDVGYPG 197 (269)
T ss_dssp SCCCCCSTTS-------SSSCCCTT--------SHHHHHTTHHHHHHHHHHTTSSCCCCCSSSCCSSSCCSSTTSCSCTT
T ss_pred cCccccccch-------hhhhcchH--------HHHHHHHHHHHHHHHHHHhccccCCccccccccccccccccccCCCC
Confidence 4466888753 34554442 24567888999999998753 2222 134668999
Q ss_pred CC-CCCCCCCC-CHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhcCCCchhhhh-hhhCCCCCcchhccc
Q 024654 191 GS-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA-DHLADPVNNNAWAYA 257 (264)
Q Consensus 191 g~-FDPLgl~~-dpe~~~~lk~kELkNGRLAMlA~~G~~~Q~~vtGkgPl~nl~-~hla~P~~~n~~~~~ 257 (264)
|. ||||||.+ |+|+++++|++||||||||||||+|+++|+++||++|++||. +||+|| +||+|++.
T Consensus 198 ~~~fDPlgl~~~~~e~~~~~~~~Ei~nGRlAMla~~g~~~~~~~tg~g~l~~l~~~HladP-~~n~~~~~ 266 (269)
T 2wsc_2 198 GLWFDPLGWGSASPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAAHLADP-HATIFAAF 266 (269)
T ss_dssp CSSCCCSSSSSSCCCSCTTSTTTTHHHHHHHHTTTSSSCHHHHHTTTCSSCCCSCCCCCCS-CCCCCSSS
T ss_pred CcccCccccCcccHHHHHHHHHhhcccchHHHHHHHHHHHHHHhcCCChHHHHHHHHhcCc-ccchhhhc
Confidence 96 99999974 788899999999999999999999999999999999999999 999999 99997653
No 4
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*
Probab=100.00 E-value=5.5e-63 Score=447.58 Aligned_cols=191 Identities=37% Similarity=0.685 Sum_probs=128.1
Q ss_pred CCCCCCC-CCccccCCCCCCCCCCCCCCCCCCCCCCCCccCCCHHHHHHHHHHHHhhhhhhHhhhchhhhhhhhhhcCcc
Q 024654 45 GSPWYGP-DRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 123 (264)
Q Consensus 45 ~~~wyg~-~r~~~lgpf~~~~P~~L~G~~pGd~gfDPlGLs~d~e~~~~~ReaELkHGR~AMLA~lG~l~pE~l~~~G~~ 123 (264)
...||+| ||++|+ |+. ++|+||+|++|||||||||||++|+|+++|||++|||||||||||++|++++|+++..|+.
T Consensus 44 ~~~~~~~~~r~~~~-pg~-~~p~~l~g~~pGd~gfDPlGl~~d~e~~~~~r~aEl~hGR~AMla~~G~~~~e~~~~~g~~ 121 (251)
T 2wsc_4 44 SASFKVEAKKGEWL-PGL-ASPGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGII 121 (251)
T ss_dssp ---------------------------------------CCCSCCCTTTTHHHHHHHTHHHHHHHTTSSTTSSSCCSCSS
T ss_pred cccccCcchhhhcc-CCC-CCccccCCCcCCCCCCCccccCCChHHHHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcc
Confidence 3458999 899999 665 8999999999999999999999999999999999999999999999999999999877764
Q ss_pred cCchhhhhcccccccCCCcccCCCCchhhHHHHHHHHHHHHHHHHhhhceeccC----CCCCC----------CCCCCCC
Q 024654 124 FGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG----GPLGE----------VTDPLYP 189 (264)
Q Consensus 124 f~~~~w~~ag~~~~~~g~l~~~~~p~~~~aq~i~~~~~~~~~l~g~vE~~r~~g----g~~g~----------~~d~~yP 189 (264)
..+.|+++|. .+|++++. .++++|+++||++|.+|+.+ |+.+. ..|..||
T Consensus 122 -~~p~w~~aG~-------~~~~~~~~--------~l~~~qi~liG~~E~~r~~~~~~pG~~g~~p~f~~~~~~~~d~~yP 185 (251)
T 2wsc_4 122 -NVPKWYAAGK-------EEYFASSS--------TLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIFKQYSLPAGEVGYP 185 (251)
T ss_dssp -CCCCCSCCCS-------SSCSSCSS--------CTTTTHHHHHHTTTHHHHHHHSSCCCTTCCSSSCSSSSCCHHHHSS
T ss_pred -CCccccccch-------Hhhhccch--------HHHHHHHHHHHHHHHHHhhcccCCCcccccccccccccccccccCC
Confidence 4567888653 35665542 23456777899999988653 33221 1245799
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhcCCCchhhhhhhhCCCCCcchhcccc
Q 024654 190 GGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYAT 258 (264)
Q Consensus 190 Gg~FDPLgl~~dpe~~~~lk~kELkNGRLAMlA~~G~~~Q~~vtGkgPl~nl~~hla~P~~~n~~~~~~ 258 (264)
||.|||||+.+ ++++|+|||||||| ||||+||++|+++||++|++||.+|++||++||+|++++
T Consensus 186 Gg~FDPLgl~~----~~~~k~kELkNGRL-MlAilGf~vQe~vTG~gPl~nL~~hladP~~~n~~~~~~ 249 (251)
T 2wsc_4 186 GGIFNPLNFAP----TLEAKEKEIANGRL-MLAFLGFIIQHNVTGKGPFDNLLQHISDPWHNTIVQTLG 249 (251)
T ss_dssp CCTTCCCCCCS----SSSCTTHHHHHHHT-TTTHHHHHHHHTTSCCCCCCCTTTTTTCCCCCCSCC---
T ss_pred CCccCccchhH----HHHHHHHHHhcchh-HHHHHHHHHHHHhcCccHHHHHHHHccChhhhhhhhhhc
Confidence 99999999975 67899999999999 999999999999999999999999999999999988754
No 5
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*
Probab=100.00 E-value=7e-62 Score=445.12 Aligned_cols=199 Identities=44% Similarity=0.803 Sum_probs=115.5
Q ss_pred CCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCccCCCHHHH------HHHHHHHHhhhhhhHhhhchhhhhhhhhhcC
Q 024654 48 WYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETF------AKNRELEVIHCRWAMLGALGCVFPELLARNG 121 (264)
Q Consensus 48 wyg~~r~~~lgpf~~~~P~~L~G~~pGd~gfDPlGLs~d~e~~------~~~ReaELkHGR~AMLA~lG~l~pE~l~~~G 121 (264)
+||+||++|+ |+. ++|+||+|++||||||||||| +|++++ +||||+|||||||||||++|++++|+++..|
T Consensus 51 ~~g~~R~~wl-P~~-~~P~~L~G~~pGD~GfDPlGl-~d~~~~~~~~~~~~~r~aEl~hGR~AMLa~~G~l~~E~~~~~g 127 (276)
T 2wsc_3 51 KQGSDRPLWF-ASK-QSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGKAG 127 (276)
T ss_dssp -------------------------------------CCCCCCCCSSSTTHHHHHHHHHHTTSCCTTTSTTSCSSCSSCC
T ss_pred ccCCCccccC-CCC-CCcccccCcCCCccCCCcccc-CChHhhcchhhHHHHHHHHhhcccchhhhHHHHHHHHHhcccc
Confidence 5999999999 876 999999999999999999999 688989 9999999999999999999999999998888
Q ss_pred cccCc-h-hhhhcccccccCCCcccCCCCchhhHHHHHHHHHHHHHHHHhhhceeccC----CCCC------------CC
Q 024654 122 VKFGE-A-VWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG----GPLG------------EV 183 (264)
Q Consensus 122 ~~f~~-~-~w~~ag~~~~~~g~l~~~~~p~~~~aq~i~~~~~~~~~l~g~vE~~r~~g----g~~g------------~~ 183 (264)
+.+.+ + .|++++. |+..|.++|++++. .++++|+++||++|.+|+++ |+.+ +.
T Consensus 128 ~~~~~~p~~w~~~g~-ip~aG~~~~~~~~~--------~l~~~qi~liG~~E~~r~~~~~~pG~~g~~p~~g~~~~~~~~ 198 (276)
T 2wsc_3 128 LIPQETALPWFRTGF-IPPAGTYNYWADSY--------TLFVFEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGS 198 (276)
T ss_dssp CCCCSSCCSSSSCCC-C-----CCCSCCCC--------STTHHHHHHTHHHHTTTTTGGGSCCCCCCCCSSCSCCCCCCC
T ss_pred cccccCcchhhhhhc-ccchhHHHHhccch--------HHHHHHHHHHHHHHHhhhcccccCCccccccccccccccccc
Confidence 76532 2 4988664 56667778887763 24567888999999998653 2221 23
Q ss_pred CCCCCCCCC-CCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhcCCCchhhhhhhhCCCCCcchhcccc
Q 024654 184 TDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYAT 258 (264)
Q Consensus 184 ~d~~yPGg~-FDPLgl~~dpe~~~~lk~kELkNGRLAMlA~~G~~~Q~~vtGkgPl~nl~~hla~P~~~n~~~~~~ 258 (264)
.|..||||. ||||||.+|+++++++|++|||||||||+||+|+++|+++||++|++||.+||+||++||++++.+
T Consensus 199 ~d~~yPG~~~fDPlgl~~~~~~~~~~r~~Ei~nGRlAMla~~g~~~~~~~tg~g~~~~l~~HladP~~~n~~~~~~ 274 (276)
T 2wsc_3 199 GEPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQALVTGVGPYQNLLDHLTDPVHNNILTSLK 274 (276)
T ss_dssp SSCTTTSSSSCCCCCCSSSCC-----CCSHHHHHHHHHHHHHHHHSSCCCCSSCCSCC------------------
T ss_pred ccccCCCcccccchhcccccHHHHHHHHhhhcccchHHHHHHHHHHHHHhcCCChHHHHHHhccCcccchhhhhcc
Confidence 466899995 999999988888999999999999999999999999999999999999999999999999987643
No 6
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*
Probab=100.00 E-value=1.4e-59 Score=422.87 Aligned_cols=190 Identities=44% Similarity=0.771 Sum_probs=141.4
Q ss_pred CccccCCCCCCCCCCCCCCCCCCCCCCCCccCCCHHHHHHHHHHHHhhhhhhHhhhchhhhhhhhhhcCcccCchhhhhc
Q 024654 53 RVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKA 132 (264)
Q Consensus 53 r~~~lgpf~~~~P~~L~G~~pGd~gfDPlGLs~d~e~~~~~ReaELkHGR~AMLA~lG~l~pE~l~~~G~~f~~~~w~~a 132 (264)
|++|+ |+. ++|+||+|++||||||||+||++|+|+++||||+|||||||||||++|+++||+++. ..|+++
T Consensus 45 ~~~w~-P~~-~~P~~L~G~~pgd~gfDPlgl~~~~~~~~~~r~~El~hgR~AMla~~G~~~~e~~~~-------~~~~~a 115 (241)
T 2wsc_1 45 AAHWM-PGE-PRPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGY-------GNWVKA 115 (241)
T ss_dssp ------------------CTTSSCCCSSTTTTTTTTHHHHSHHHHHHHHHHHTTTSTTSSSTTCCCC-------C-----
T ss_pred ccccC-CCC-CCcccccCCCCCcCCcCccccCCCHHHHHHHHHHHHhhchhHHhhhhcccchhhccC-------Cccccc
Confidence 44566 776 899999999999999999999999999999999999999999999999999998753 236665
Q ss_pred ccc-cccCCCcccCCCCchhhHHHHHHHHHHHHHHHHhhhceeccCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q 024654 133 GAQ-IFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVK 211 (264)
Q Consensus 133 g~~-~~~~g~l~~~~~p~~~~aq~i~~~~~~~~~l~g~vE~~r~~gg~~g~~~d~~yPGg~FDPLgl~~dpe~~~~lk~k 211 (264)
+.. .+.++..+|+++|. +++.++.++++|+++|+++|.+|..+. +..+..||||.||||||.+|+|+++++|++
T Consensus 116 ~~~~~~~~g~a~~~~~~~--~~~~~~~i~~iq~l~ig~~E~~r~~~~---~~~~~~yPgg~fDPlgl~~~~~~~~~~r~~ 190 (241)
T 2wsc_1 116 QEWAALPGGQATYLGNPV--PWGTLPTILAIEFLAIAFVEHQRSMEK---DPEKKKYPGGAFDPLGYSKDPKKLEELKVK 190 (241)
T ss_dssp CCCCSCSSCSSCCSSSCS--SSSSHHHHHHHHHHHTHHHHHHHTSCC---SSCCSSSCSCCSCSSSCSCSSSSCCCSCTT
T ss_pred cchhccCCcchhhhcCcc--hHHHHHHHHHHHHHHHHHHHHHHHhcc---CCCCCCCCCCcccccccccchhHHHHHHHh
Confidence 431 34455567777663 234556778899999999999987542 233568999999999999999999999999
Q ss_pred HHhhhhHHHHHHHHHHHHH-hhcCCCchhhhhhhhCCCCCcchhcc
Q 024654 212 EIKNGRLAMFSMFGFFVQA-IVTGKGPLENLADHLADPVNNNAWAY 256 (264)
Q Consensus 212 ELkNGRLAMlA~~G~~~Q~-~vtGkgPl~nl~~hla~P~~~n~~~~ 256 (264)
|||||||||+|++|+++|+ ++||+||++||.+|++||++||++++
T Consensus 191 E~~nGRlAM~a~~g~~~~~~~~tG~gpl~~l~~h~adP~~~n~~~~ 236 (241)
T 2wsc_1 191 EIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDI 236 (241)
T ss_dssp HHHHHHHHHHHHHSGGGGGSSSCCSCCCCCSSCSCCCSCC------
T ss_pred hcccccHHHHHHHHHHHhhhhcCCCchHHHHHHHhcCccccceeee
Confidence 9999999999999999999 68999999999999999999999654
No 7
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}
Probab=99.42 E-value=6.4e-14 Score=125.94 Aligned_cols=50 Identities=34% Similarity=0.570 Sum_probs=47.1
Q ss_pred CCCCCCCCCCCccCCCHHHHHHHHHHHHhhhhhhHhhhchhhhhhhhhhcC
Q 024654 71 EFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNG 121 (264)
Q Consensus 71 ~~pGd~gfDPlGLs~d~e~~~~~ReaELkHGR~AMLA~lG~l~pE~l~~~G 121 (264)
.+|||+ |||+||++|+++++++|++||||||+||+|++|++++|+++..|
T Consensus 172 ~~PG~~-FDPLGl~~d~e~~~~~r~~ElknGRlAMla~~g~~~q~~vtG~G 221 (243)
T 3pl9_A 172 LYPGGT-FDPLGLASDPEKKPILQLAEIKHARLAMVGFLGFAVQAAVTGKG 221 (243)
T ss_dssp TCCCGG-GCTTCTTCSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred cCCCcc-hhhccccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhcCCC
Confidence 589999 99999999999999999999999999999999999999987554
No 8
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*
Probab=99.42 E-value=2e-13 Score=122.23 Aligned_cols=51 Identities=27% Similarity=0.548 Sum_probs=47.0
Q ss_pred CCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhcC
Q 024654 184 TDPLYPGG-SFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTG 234 (264)
Q Consensus 184 ~d~~yPGg-~FDPLgl~~dpe~~~~lk~kELkNGRLAMlA~~G~~~Q~~vtG 234 (264)
.|..+||| +||||||++|+|+++++|..||||||+||+|++|+++|++++.
T Consensus 36 LdG~~pGD~GFDPLGLs~d~e~~~r~ReaELkHGR~AMLA~~G~lv~E~l~~ 87 (232)
T 2bhw_A 36 LTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGSVFPELLSR 87 (232)
T ss_dssp CCSCSTTCCSCCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCcCCCCCCCCCCcCCCCHHHHHHHHHHHHhccchHHHhhhhhhhHHHhcc
Confidence 35578999 5999999999999999999999999999999999999999864
No 9
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*
Probab=99.38 E-value=2e-14 Score=129.95 Aligned_cols=54 Identities=39% Similarity=0.687 Sum_probs=39.4
Q ss_pred CCCCCCC-CCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhcCCCch
Q 024654 185 DPLYPGG-SFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 238 (264)
Q Consensus 185 d~~yPGg-~FDPLgl~~dpe~~~~lk~kELkNGRLAMlA~~G~~~Q~~vtGkgPl 238 (264)
|..+||| .||||||.+|+|+++++|.+||||||+||+|++|+++||++++.+++
T Consensus 67 ~g~~pGd~gfDPlGl~~d~e~~~~~r~aEl~hGR~AMla~~G~~~~e~~~~~g~~ 121 (251)
T 2wsc_4 67 TGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGII 121 (251)
T ss_dssp --------------CCCSCCCTTTTHHHHHHHTHHHHHHHTTSSTTSSSCCSCSS
T ss_pred CCCcCCCCCCCccccCCChHHHHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcc
Confidence 3468999 49999999999999999999999999999999999999999998876
No 10
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*
Probab=99.35 E-value=7.1e-14 Score=127.46 Aligned_cols=53 Identities=38% Similarity=0.613 Sum_probs=36.5
Q ss_pred CCCCCC-CCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhcCCCch
Q 024654 186 PLYPGG-SFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 238 (264)
Q Consensus 186 ~~yPGg-~FDPLgl~~dpe~~~~lk~kELkNGRLAMlA~~G~~~Q~~vtGkgPl 238 (264)
..+||| +||||||.+|+|+++++|.+||||||+||+|++|+++|+++++.+.+
T Consensus 79 G~~pGD~GfDPlGL~~d~e~~~~~r~aElkHGR~AMLA~~G~l~~E~l~~~G~~ 132 (269)
T 2wsc_2 79 GSLPGDFGFDPLGLGSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGIL 132 (269)
T ss_dssp ---------------CCCSCCTTTHHHHHHTHHHHTTTTHHHHHHHHHCCTTSS
T ss_pred CcCCCCCCCCccccCCCHHHHHHHHHHHHhcchHHHHHHHHhHhHHhhccCCcc
Confidence 457999 49999999999999999999999999999999999999999976654
No 11
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*
Probab=99.34 E-value=1.3e-13 Score=126.15 Aligned_cols=53 Identities=26% Similarity=0.409 Sum_probs=43.4
Q ss_pred CCCCCCCCCCCCCccCCCHHHHHHHHHHHHhhhhhhHhhhchhhhhhhhhhcC
Q 024654 69 TGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNG 121 (264)
Q Consensus 69 ~G~~pGd~gfDPlGLs~d~e~~~~~ReaELkHGR~AMLA~lG~l~pE~l~~~G 121 (264)
+..+|||++|||+||++|+++++++|++||||||+||+|++|++++|+++..|
T Consensus 200 d~~yPG~~~fDPlgl~~~~~~~~~~r~~Ei~nGRlAMla~~g~~~~~~~tg~g 252 (276)
T 2wsc_3 200 EPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQALVTGVG 252 (276)
T ss_dssp SCTTTSSSSCCCCCCSSSCC-----CCSHHHHHHHHHHHHHHHHSSCCCCSSC
T ss_pred cccCCCcccccchhcccccHHHHHHHHhhhcccchHHHHHHHHHHHHHhcCCC
Confidence 44689999999999998888899999999999999999999999999886544
No 12
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*
Probab=99.23 E-value=8.6e-13 Score=118.66 Aligned_cols=50 Identities=34% Similarity=0.530 Sum_probs=44.7
Q ss_pred CCCCCCCC-CCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhcC
Q 024654 185 DPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTG 234 (264)
Q Consensus 185 d~~yPGg~-FDPLgl~~dpe~~~~lk~kELkNGRLAMlA~~G~~~Q~~vtG 234 (264)
|...|||. ||||||.+|+|+++++|..||||||+||+|++|+++|++++.
T Consensus 59 ~G~~pgd~gfDPlgl~~~~~~~~~~r~~El~hgR~AMla~~G~~~~e~~~~ 109 (241)
T 2wsc_1 59 DGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGY 109 (241)
T ss_dssp --CTTSSCCCSSTTTTTTTTHHHHSHHHHHHHHHHHTTTSTTSSSTTCCCC
T ss_pred cCCCCCcCCcCccccCCCHHHHHHHHHHHHhhchhHHhhhhcccchhhccC
Confidence 34679995 999999999999999999999999999999999999998753
No 13
>2dpr_A CON-T(K7GLA); conantoxin, nmdar antagonist, GLA-containing, metal B protein; HET: CGU; 1.70A {Synthetic} PDB: 1ont_A*
Probab=42.58 E-value=16 Score=21.27 Aligned_cols=15 Identities=33% Similarity=0.299 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHhhh
Q 024654 87 PETFAKNRELEVIHC 101 (264)
Q Consensus 87 ~e~~~~~ReaELkHG 101 (264)
+|.+..+||+|+|.-
T Consensus 6 qemlenlreaevkkn 20 (26)
T 2dpr_A 6 QEMLENLREAEVKKN 20 (26)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc
Confidence 467889999999864
No 14
>3nrt_A Putative ryanodine receptor; PSI-2, protein structure initiative, structural genomics, MI center for structural genomics (MCSG); 2.54A {Bacteroides thetaiotaomicron}
Probab=26.82 E-value=35 Score=26.23 Aligned_cols=21 Identities=33% Similarity=0.526 Sum_probs=14.8
Q ss_pred HHHHHHHHH--HHHhhhhhhHhh
Q 024654 87 PETFAKNRE--LEVIHCRWAMLG 107 (264)
Q Consensus 87 ~e~~~~~Re--aELkHGR~AMLA 107 (264)
|..+...+| ||..|.||||==
T Consensus 24 ~~~le~lvE~LAen~H~~Wa~~r 46 (103)
T 3nrt_A 24 PESLIQLSERIAENVHEVWAKAR 46 (103)
T ss_dssp CHHHHTTHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555444 799999999754
Done!