BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024658
(264 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O82256|COL13_ARATH Zinc finger protein CONSTANS-LIKE 13 OS=Arabidopsis thaliana
GN=COL13 PE=2 SV=1
Length = 332
Score = 51.6 bits (122), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 2 RKCELCECP-ARMYCESDQASLCWDCDEKVHCANFLVAKHLRCLLCHVCQ 50
R C+ C+ A +YC++D A LC CD++VH AN L AKH R LLC C
Sbjct: 11 RLCDYCDSSVALVYCKADSAKLCLACDKQVHVANQLFAKHFRSLLCDSCN 60
>sp|Q9C9F4|COLX_ARATH Putative zinc finger protein At1g68190 OS=Arabidopsis thaliana
GN=At1g68190 PE=2 SV=1
Length = 356
Score = 51.6 bits (122), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 2 RKCELCECP-ARMYCESDQASLCWDCDEKVHCANFLVAKHLRCLLCHVCQS 51
R CE C+ A +YC +D A+LC CD KVH AN L +HLR +LC C++
Sbjct: 12 RVCEFCKAYRAVVYCIADTANLCLTCDAKVHSANSLSGRHLRTVLCDSCKN 62
>sp|Q9SK53|COL3_ARATH Zinc finger protein CONSTANS-LIKE 3 OS=Arabidopsis thaliana
GN=COL3 PE=1 SV=1
Length = 294
Score = 51.2 bits (121), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 2 RKCELCE-CPARMYCESDQASLCWDCDEKVHCANFLVAKHLRCLLCHVCQ 50
R C+ C+ A ++C +D A LC DCD K+H AN L ++H R LC VC+
Sbjct: 6 RLCDSCKSTAATLFCRADAAFLCGDCDGKIHTANKLASRHERVWLCEVCE 55
Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 4 CELCE-CPARMYCESDQASLCWDCDEKVHCANFLVAKHLRCLLCHVCQSLTPWKAS 58
CE+CE PA + C++D A+LC CD +H AN L +H R + ++ P K++
Sbjct: 51 CEVCEQAPAHVTCKADAAALCVTCDRDIHSANPLSRRHERVPITPFYDAVGPAKSA 106
>sp|O23379|COL11_ARATH Putative zinc finger protein CONSTANS-LIKE 11 OS=Arabidopsis
thaliana GN=COL11 PE=3 SV=2
Length = 330
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Query: 3 KCELCEC-PARMYCESDQASLCWDCDEKVHCANFLVAKHLRCLLCHVCQSLTPWKASGPK 61
+C+ C A +YC+SD A LC +CD VH AN L +H R LLC C SL P
Sbjct: 4 RCDFCGTEKALIYCKSDSAKLCLNCDVNVHSANPLSQRHTRSLLCEKC-SLQPTAVHC-- 60
Query: 62 LGPTVSVCDACVAAA 76
+ VS+C C A
Sbjct: 61 MNENVSLCQGCQWTA 75
>sp|Q940T9|COL4_ARATH Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis thaliana
GN=COL4 PE=2 SV=2
Length = 362
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 2 RKCELCE-CPARMYCESDQASLCWDCDEKVHCANFLVAKHLRCLLCHVCQ 50
+ C+ C+ A +YC D A LC CD KVH AN L ++H R +C VC+
Sbjct: 4 KLCDSCKSATAALYCRPDAAFLCLSCDSKVHAANKLASRHARVWMCEVCE 53
>sp|Q9SYM2|STHY_ARATH Probable salt tolerance-like protein At1g78600 OS=Arabidopsis
thaliana GN=At1g78600 PE=1 SV=2
Length = 299
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 33/58 (56%), Gaps = 10/58 (17%)
Query: 3 KCELCECP-ARMYCESDQASLCWDCDEKVHCANFLVAKHLRCLL---------CHVCQ 50
+C +CE A + C +D+A+LCW CDEK+H AN L KH R L C +CQ
Sbjct: 4 QCNVCEAAEATVLCCADEAALCWACDEKIHAANKLAGKHQRVPLSASASSIPKCDICQ 61
>sp|Q96502|COL2_ARATH Zinc finger protein CONSTANS-LIKE 2 OS=Arabidopsis thaliana
GN=COL2 PE=1 SV=1
Length = 347
Score = 48.1 bits (113), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 2 RKCELCECPA-RMYCESDQASLCWDCDEKVHCANFLVAKHLRCLLCHVCQS 51
R C+ C A +YCE+D A LC CD +VH AN + ++H R +C C+S
Sbjct: 14 RACDTCRSAACTVYCEADSAYLCTTCDARVHAANRVASRHERVRVCQSCES 64
>sp|O22800|COL14_ARATH Zinc finger protein CONSTANS-LIKE 14 OS=Arabidopsis thaliana
GN=COL14 PE=2 SV=2
Length = 402
Score = 47.8 bits (112), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 4 CELC-ECPARMYCESDQASLCWDCDEKVHCANFLVAKHLRCLLCHVC 49
CE C E A ++C +D A LC CD+ VH AN L KH+R +C C
Sbjct: 12 CEFCGERTAVLFCRADTAKLCLPCDQHVHSANLLSRKHVRSQICDNC 58
>sp|Q9LJ44|COL12_ARATH Zinc finger protein CONSTANS-LIKE 12 OS=Arabidopsis thaliana
GN=COL12 PE=2 SV=2
Length = 364
Score = 47.8 bits (112), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 3 KCELCECP-ARMYCESDQASLCWDCDEKVHCANFLVAKHLRCLLCHVCQS 51
KC+ C A +YC+SD A LC +CD VH AN L +H+R L+C C S
Sbjct: 4 KCDHCATSQALIYCKSDLAKLCLNCDVHVHSANPLSHRHIRSLICEKCFS 53
>sp|Q9C7E8|COL15_ARATH Zinc finger protein CONSTANS-LIKE 15 OS=Arabidopsis thaliana
GN=COL15 PE=2 SV=1
Length = 433
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 4 CELC-ECPARMYCESDQASLCWDCDEKVHCANFLVAKHLRCLLCHVC 49
C+ C E A ++C +D A LC CD++VH AN L KH+R +C C
Sbjct: 9 CDFCGERTAVLFCRADTAKLCLPCDQQVHTANLLSRKHVRSQICDNC 55
>sp|Q9LQZ7|STHX_ARATH Probable salt tolerance-like protein At1g75540 OS=Arabidopsis
thaliana GN=At1g75540 PE=1 SV=1
Length = 331
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 3 KCELCECP-ARMYCESDQASLCWDCDEKVHCANFLVAKHLRCLLCHVCQSLT 53
+C++C+ A ++C +D+ASLC CD +VH AN L +KHLR L + S T
Sbjct: 4 RCDVCDKEEASVFCTADEASLCGGCDHQVHHANKLASKHLRFSLLYPSSSNT 55
>sp|Q9FDX8|HD1_ORYSJ Zinc finger protein HD1 OS=Oryza sativa subsp. japonica GN=HD1
PE=2 SV=1
Length = 395
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 2 RKCELCEC-PARMYCESDQASLCWDCDEKVHCANFLVAKHLRCLLCHVCQ 50
R C+ C P+ +YC +D A LC CD +VH AN + ++H R +C C+
Sbjct: 33 RPCDGCRAAPSVVYCRADAAYLCASCDARVHAANRVASRHERVRVCEACE 82
>sp|Q9LUA9|COL10_ARATH Zinc finger protein CONSTANS-LIKE 10 OS=Arabidopsis thaliana
GN=COL10 PE=1 SV=1
Length = 373
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 4 CELC-ECPARMYCESDQASLCWDCDEKVHCANFLVAKHLRCLLCHVCQS 51
C+ C E + +YC SD A LC CD VH AN L +H R L+C C +
Sbjct: 5 CDFCGEQRSMVYCRSDAACLCLSCDRNVHSANALSKRHSRTLVCERCNA 53
>sp|Q9SSE5|COL9_ARATH Zinc finger protein CONSTANS-LIKE 9 OS=Arabidopsis thaliana
GN=COL9 PE=2 SV=1
Length = 372
Score = 44.7 bits (104), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 4 CELC-ECPARMYCESDQASLCWDCDEKVHCANFLVAKHLRCLLCHVCQS 51
C+ C E + +YC SD A LC CD VH AN L +H R L+C C +
Sbjct: 5 CDFCGEQRSMVYCRSDAACLCLSCDRSVHSANALSKRHSRTLVCERCNA 53
>sp|Q39057|CONS_ARATH Zinc finger protein CONSTANS OS=Arabidopsis thaliana GN=CO PE=1
SV=1
Length = 373
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 2 RKCELCECPA-RMYCESDQASLCWDCDEKVHCANFLVAKHLRCLLCHVCQ 50
R C+ C A +YC +D A LC CD +VH AN + ++H R +C C+
Sbjct: 18 RPCDTCRSNACTVYCHADSAYLCMSCDAQVHSANRVASRHKRVRVCESCE 67
>sp|O50055|COL1_ARATH Zinc finger protein CONSTANS-LIKE 1 OS=Arabidopsis thaliana
GN=COL1 PE=1 SV=1
Length = 355
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 4 CELCECPA-RMYCESDQASLCWDCDEKVHCANFLVAKHLRCLLCHVCQ 50
C+ C A +YC +D A LC CD +VH AN L ++H R +C C+
Sbjct: 12 CDTCRSAACTVYCRADSAYLCSSCDAQVHAANRLASRHERVRVCQSCE 59
>sp|Q9SID1|STH_ARATH Salt tolerance-like protein OS=Arabidopsis thaliana GN=STH PE=1
SV=2
Length = 238
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 15/87 (17%)
Query: 3 KCELCE-CPARMYCESDQASLCWDCDEKVHCANFLVAKHLRCLLCHVCQSLTPWKASGPK 61
+C++CE PA + C +D+A+LC CD +VH AN L +KH R L + P
Sbjct: 4 QCDVCEKAPATLICCADEAALCAKCDVEVHAANKLASKHQRLFLDSLSTKFPP------- 56
Query: 62 LGPTVSVCDACVAAARCGVNDDDKAVV 88
CD C+ A +D+A++
Sbjct: 57 -------CDICLEKAAFIFCVEDRALL 76
Score = 34.7 bits (78), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 4 CELC-ECPARMYCESDQASLCWDCDEKVHCANFLVAKHLRCL 44
C++C E A ++C D+A LC DCDE H N A H R L
Sbjct: 57 CDICLEKAAFIFCVEDRALLCRDCDEATHAPNTRSANHQRFL 98
>sp|Q96288|STO_ARATH Salt tolerance protein OS=Arabidopsis thaliana GN=STO PE=1 SV=1
Length = 248
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 13/68 (19%)
Query: 3 KCELC-ECPARMYCESDQASLCWDCDEKVHCANFLVAKHLRCLLCHVCQSLTPWKASGPK 61
+C++C E A ++C D+A LC DCDE +H AN A H R L A+G K
Sbjct: 56 RCDICQEKAAFIFCVEDRALLCRDCDESIHVANSRSANHQRFL------------ATGIK 103
Query: 62 LGPTVSVC 69
+ T ++C
Sbjct: 104 VALTSTIC 111
Score = 40.0 bits (92), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 10/58 (17%)
Query: 3 KCELCE-CPARMYCESDQASLCWDCDEKVHCANFLVAKHLRCLL---------CHVCQ 50
+C++CE PA + C +D+A+LC CD ++H AN L +KH R L C +CQ
Sbjct: 4 QCDVCEKAPATVICCADEAALCPQCDIEIHAANKLASKHQRLHLNSLSTKFPRCDICQ 61
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.130 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 110,026,714
Number of Sequences: 539616
Number of extensions: 5352418
Number of successful extensions: 166131
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 2380
Number of HSP's successfully gapped in prelim test: 908
Number of HSP's that attempted gapping in prelim test: 73069
Number of HSP's gapped (non-prelim): 36820
length of query: 264
length of database: 191,569,459
effective HSP length: 115
effective length of query: 149
effective length of database: 129,513,619
effective search space: 19297529231
effective search space used: 19297529231
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (27.7 bits)