Query 024660
Match_columns 264
No_of_seqs 107 out of 190
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 06:25:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024660.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024660hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3024 Uncharacterized conser 100.0 2.4E-61 5.1E-66 436.5 21.9 225 12-264 4-243 (312)
2 PF04190 DUF410: Protein of un 100.0 7.8E-57 1.7E-61 408.8 19.3 191 45-264 1-201 (260)
3 PF14938 SNAP: Soluble NSF att 97.3 0.002 4.4E-08 58.9 10.2 212 29-262 30-242 (282)
4 KOG1586 Protein required for f 95.2 0.48 1E-05 43.6 12.4 180 48-262 28-241 (288)
5 PRK15174 Vi polysaccharide exp 93.3 11 0.00024 38.7 20.6 69 158-244 316-384 (656)
6 COG2956 Predicted N-acetylgluc 93.1 2.5 5.5E-05 40.5 13.1 78 163-243 217-313 (389)
7 COG3071 HemY Uncharacterized e 92.1 1.2 2.6E-05 43.3 9.7 43 139-188 311-353 (400)
8 PF14938 SNAP: Soluble NSF att 92.0 3 6.5E-05 38.0 12.1 80 25-105 66-147 (282)
9 TIGR00540 hemY_coli hemY prote 91.6 5.3 0.00012 38.3 13.8 41 140-187 317-359 (409)
10 TIGR02917 PEP_TPR_lipo putativ 91.2 17 0.00038 36.3 21.4 38 21-58 234-285 (899)
11 KOG1463 26S proteasome regulat 90.1 2.7 5.9E-05 40.5 9.9 139 16-183 6-148 (411)
12 PRK10747 putative protoheme IX 89.9 11 0.00023 36.2 14.1 43 139-188 311-353 (398)
13 COG5159 RPN6 26S proteasome re 89.2 6.3 0.00014 37.5 11.4 136 18-182 7-144 (421)
14 KOG3616 Selective LIM binding 89.2 7.4 0.00016 41.3 12.8 44 14-57 824-873 (1636)
15 PRK10049 pgaA outer membrane p 88.6 31 0.00067 36.1 17.4 80 161-244 360-459 (765)
16 PF07719 TPR_2: Tetratricopept 88.1 0.77 1.7E-05 27.5 3.3 26 160-188 1-26 (34)
17 TIGR02917 PEP_TPR_lipo putativ 88.0 31 0.00067 34.5 17.6 65 157-239 834-898 (899)
18 PRK11788 tetratricopeptide rep 87.8 22 0.00049 32.8 18.0 81 158-243 212-313 (389)
19 PF13414 TPR_11: TPR repeat; P 87.3 5.6 0.00012 27.6 7.9 64 159-240 2-66 (69)
20 PLN03218 maturation of RBCL 1; 83.7 75 0.0016 35.0 18.3 80 158-240 682-782 (1060)
21 PF08631 SPO22: Meiosis protei 83.6 35 0.00075 31.1 18.5 100 159-262 141-249 (278)
22 PLN03081 pentatricopeptide (PP 83.3 58 0.0012 33.4 20.4 166 37-241 262-455 (697)
23 PF12895 Apc3: Anaphase-promot 82.3 0.84 1.8E-05 33.5 1.7 41 143-187 42-82 (84)
24 PRK00794 flbT flagellar biosyn 81.8 2 4.2E-05 35.8 3.8 32 12-43 91-122 (132)
25 KOG2066 Vacuolar assembly/sort 81.5 11 0.00025 39.7 9.9 171 18-203 360-545 (846)
26 PRK12791 flbT flagellar biosyn 80.9 1.9 4.2E-05 35.8 3.5 32 12-43 88-119 (131)
27 PRK11788 tetratricopeptide rep 79.5 51 0.0011 30.3 16.3 80 161-243 181-280 (389)
28 PF07721 TPR_4: Tetratricopept 79.3 2.6 5.6E-05 24.7 2.8 24 160-186 1-24 (26)
29 PF07378 FlbT: Flagellar prote 79.2 2.7 5.8E-05 34.7 3.8 33 11-43 88-120 (126)
30 PRK10803 tol-pal system protei 78.0 15 0.00031 33.8 8.7 70 160-244 180-249 (263)
31 PF13429 TPR_15: Tetratricopep 77.1 9.7 0.00021 34.0 7.2 146 18-188 81-239 (280)
32 PF04733 Coatomer_E: Coatomer 76.9 63 0.0014 29.9 12.8 64 13-88 81-145 (290)
33 PRK10747 putative protoheme IX 75.8 76 0.0016 30.3 18.2 82 157-243 260-359 (398)
34 KOG1840 Kinesin light chain [C 75.7 95 0.0021 31.4 15.7 157 29-205 320-482 (508)
35 PRK11447 cellulose synthase su 74.9 1.4E+02 0.003 32.9 17.5 42 19-60 466-521 (1157)
36 TIGR02795 tol_pal_ybgF tol-pal 73.4 35 0.00075 25.3 10.0 26 159-187 75-100 (119)
37 TIGR02552 LcrH_SycD type III s 73.2 30 0.00064 26.8 8.3 68 158-243 49-116 (135)
38 cd00189 TPR Tetratricopeptide 73.0 24 0.00053 23.4 7.7 27 159-188 67-93 (100)
39 KOG1585 Protein required for f 72.6 85 0.0018 29.4 14.4 183 14-238 9-216 (308)
40 PF13432 TPR_16: Tetratricopep 70.5 31 0.00067 23.5 7.2 61 165-243 2-62 (65)
41 PF14559 TPR_19: Tetratricopep 70.2 6.3 0.00014 27.1 3.4 50 25-80 2-51 (68)
42 PRK10866 outer membrane biogen 69.3 86 0.0019 28.1 17.5 72 13-87 31-102 (243)
43 TIGR02521 type_IV_pilW type IV 68.1 64 0.0014 26.2 14.0 77 139-240 155-231 (234)
44 TIGR03302 OM_YfiO outer membra 67.9 78 0.0017 27.1 18.7 70 13-85 32-101 (235)
45 COG1516 FliS Flagellin-specifi 67.1 11 0.00023 31.5 4.5 60 33-107 6-65 (132)
46 TIGR02552 LcrH_SycD type III s 66.8 57 0.0012 25.2 11.2 28 158-188 83-110 (135)
47 KOG1174 Anaphase-promoting com 66.2 54 0.0012 32.8 9.8 117 36-193 370-503 (564)
48 PF13181 TPR_8: Tetratricopept 66.1 9.8 0.00021 22.6 3.2 26 161-189 2-27 (34)
49 PF13512 TPR_18: Tetratricopep 66.1 46 0.001 28.0 8.2 93 14-110 10-133 (142)
50 PF13525 YfiO: Outer membrane 64.8 92 0.002 26.8 14.2 70 15-87 6-75 (203)
51 KOG1840 Kinesin light chain [C 64.4 1.7E+02 0.0036 29.7 22.8 212 11-242 195-439 (508)
52 PRK09782 bacteriophage N4 rece 64.4 2.1E+02 0.0046 31.4 14.9 29 158-189 675-703 (987)
53 PF07575 Nucleopor_Nup85: Nup8 63.0 12 0.00027 37.7 5.1 140 18-200 301-465 (566)
54 PF14561 TPR_20: Tetratricopep 62.5 19 0.0004 27.6 4.9 55 54-111 22-76 (90)
55 KOG3687 Tuberin - Rap/ran-GTPa 61.9 2.4E+02 0.0051 31.5 14.1 58 29-87 40-98 (1697)
56 smart00028 TPR Tetratricopepti 61.4 8.8 0.00019 20.6 2.3 26 160-188 1-26 (34)
57 PLN03077 Protein ECB2; Provisi 61.1 2.2E+02 0.0048 30.0 17.1 64 36-103 325-399 (857)
58 TIGR00756 PPR pentatricopeptid 60.9 13 0.00029 21.5 3.1 23 36-58 2-24 (35)
59 PRK10370 formate-dependent nit 60.6 62 0.0014 28.0 8.5 82 158-243 71-175 (198)
60 PF13428 TPR_14: Tetratricopep 60.6 11 0.00023 24.4 2.9 25 160-187 1-25 (44)
61 COG1729 Uncharacterized protei 59.4 59 0.0013 30.1 8.4 89 18-111 145-250 (262)
62 PF13371 TPR_9: Tetratricopept 59.4 21 0.00046 24.8 4.4 38 139-186 15-52 (73)
63 PF03745 DUF309: Domain of unk 57.6 9.8 0.00021 27.3 2.4 25 18-42 3-27 (62)
64 PRK11447 cellulose synthase su 57.4 3E+02 0.0065 30.3 19.4 28 158-188 179-206 (1157)
65 PLN03077 Protein ECB2; Provisi 56.8 2.6E+02 0.0056 29.4 17.6 114 36-188 224-348 (857)
66 PF14559 TPR_19: Tetratricopep 55.5 15 0.00032 25.2 3.1 28 158-188 23-50 (68)
67 cd00189 TPR Tetratricopeptide 53.3 54 0.0012 21.6 5.6 64 159-240 33-96 (100)
68 PF00515 TPR_1: Tetratricopept 52.6 23 0.00051 21.0 3.3 26 160-188 1-26 (34)
69 PF12854 PPR_1: PPR repeat 52.0 26 0.00055 21.7 3.4 23 36-58 9-31 (34)
70 KOG3060 Uncharacterized conser 50.3 2.2E+02 0.0048 26.7 12.6 31 159-189 187-217 (289)
71 PLN03088 SGT1, suppressor of 48.6 2.4E+02 0.0052 26.6 11.4 113 16-172 4-116 (356)
72 PLN03088 SGT1, suppressor of 48.1 1.3E+02 0.0029 28.4 9.2 40 139-188 56-95 (356)
73 PRK10803 tol-pal system protei 47.8 90 0.0019 28.6 7.7 65 15-82 143-208 (263)
74 TIGR00990 3a0801s09 mitochondr 46.3 3.2E+02 0.007 27.5 18.3 33 208-241 464-496 (615)
75 COG2909 MalT ATP-dependent tra 46.2 2.5E+02 0.0054 30.5 11.4 111 138-257 330-460 (894)
76 TIGR00990 3a0801s09 mitochondr 45.4 3.4E+02 0.0073 27.4 15.6 80 139-243 385-464 (615)
77 PF14223 UBN2: gag-polypeptide 45.0 1.4E+02 0.0031 23.0 8.0 74 33-108 3-79 (119)
78 PF10475 DUF2450: Protein of u 44.5 87 0.0019 28.9 7.1 62 42-107 135-196 (291)
79 PF13838 Clathrin_H_link: Clat 44.0 37 0.0008 25.0 3.6 29 32-60 4-32 (66)
80 PRK10370 formate-dependent nit 43.7 2.1E+02 0.0046 24.6 13.1 28 158-188 142-169 (198)
81 PF13432 TPR_16: Tetratricopep 43.4 59 0.0013 22.0 4.6 54 22-81 5-58 (65)
82 PF13174 TPR_6: Tetratricopept 43.0 48 0.001 19.1 3.5 24 221-244 9-32 (33)
83 PRK09782 bacteriophage N4 rece 41.6 5.2E+02 0.011 28.4 16.8 37 206-243 672-708 (987)
84 PLN03081 pentatricopeptide (PP 40.8 4.2E+02 0.009 27.2 18.3 64 36-103 160-234 (697)
85 PF14561 TPR_20: Tetratricopep 40.2 51 0.0011 25.2 4.1 64 35-103 23-89 (90)
86 PF13374 TPR_10: Tetratricopep 40.1 70 0.0015 19.2 4.2 28 37-64 5-32 (42)
87 PF13429 TPR_15: Tetratricopep 39.4 2E+02 0.0043 25.5 8.5 40 143-185 231-270 (280)
88 KOG4340 Uncharacterized conser 39.3 2.1E+02 0.0045 27.7 8.7 28 25-59 8-35 (459)
89 TIGR02795 tol_pal_ybgF tol-pal 39.2 1.5E+02 0.0033 21.7 9.4 62 18-82 6-67 (119)
90 KOG2300 Uncharacterized conser 39.1 1E+02 0.0022 31.5 6.9 48 141-191 345-395 (629)
91 PRK12370 invasion protein regu 38.9 4.1E+02 0.009 26.5 11.5 26 159-187 371-396 (553)
92 COG1729 Uncharacterized protei 38.3 1.5E+02 0.0032 27.5 7.5 76 154-244 170-247 (262)
93 COG5443 FlbT Flagellar biosynt 37.7 27 0.00058 29.3 2.3 30 14-43 94-123 (148)
94 PF10366 Vps39_1: Vacuolar sor 37.2 29 0.00063 27.5 2.4 31 32-62 37-67 (108)
95 PF13431 TPR_17: Tetratricopep 37.1 45 0.00097 20.6 2.8 23 158-183 11-33 (34)
96 PF01535 PPR: PPR repeat; Int 36.2 51 0.0011 18.6 2.9 23 36-58 2-24 (31)
97 KOG2002 TPR-containing nuclear 35.5 2.9E+02 0.0063 30.3 9.9 158 36-240 43-227 (1018)
98 PF11817 Foie-gras_1: Foie gra 34.4 1.8E+02 0.0038 26.1 7.3 47 42-88 186-232 (247)
99 KOG2796 Uncharacterized conser 34.0 4.2E+02 0.0092 25.3 9.8 138 56-244 179-318 (366)
100 TIGR00540 hemY_coli hemY prote 33.6 4.3E+02 0.0093 25.2 14.6 75 157-236 260-359 (409)
101 PF08625 Utp13: Utp13 specific 33.5 91 0.002 26.0 4.9 14 139-152 64-77 (141)
102 PF13176 TPR_7: Tetratricopept 33.4 55 0.0012 20.2 2.8 22 163-187 2-23 (36)
103 PRK11189 lipoprotein NlpI; Pro 32.7 3.8E+02 0.0083 24.3 12.6 28 158-188 96-123 (296)
104 PF10475 DUF2450: Protein of u 32.1 52 0.0011 30.3 3.6 31 14-44 127-157 (291)
105 KOG2376 Signal recognition par 31.5 6.3E+02 0.014 26.5 12.7 90 148-242 163-254 (652)
106 cd00390 Urease_gamma Urease ga 31.2 1.1E+02 0.0024 24.2 4.7 48 41-90 17-67 (96)
107 PF13041 PPR_2: PPR repeat fam 31.0 81 0.0017 20.5 3.5 42 36-101 5-46 (50)
108 PF14227 UBN2_2: gag-polypepti 31.0 2.3E+02 0.005 21.9 6.7 69 33-109 4-78 (119)
109 COG2909 MalT ATP-dependent tra 30.8 6.1E+02 0.013 27.7 11.3 95 15-109 301-409 (894)
110 TIGR01641 phageSPP1_gp7 phage 30.6 1.4E+02 0.003 23.0 5.2 42 13-55 14-55 (108)
111 PF13812 PPR_3: Pentatricopept 30.0 96 0.0021 17.9 3.4 23 36-58 3-25 (34)
112 PRK09646 RNA polymerase sigma 29.9 2.3E+02 0.0051 23.8 7.0 70 1-71 1-76 (194)
113 PF12862 Apc5: Anaphase-promot 29.8 2.4E+02 0.0052 21.1 9.7 67 21-88 5-75 (94)
114 PF10938 YfdX: YfdX protein; 29.5 1.5E+02 0.0033 25.0 5.7 47 12-58 73-141 (155)
115 PF14863 Alkyl_sulf_dimr: Alky 29.5 2.4E+02 0.0053 23.5 6.8 65 13-82 69-133 (141)
116 PF03704 BTAD: Bacterial trans 29.2 2.9E+02 0.0062 21.8 8.3 16 43-58 71-86 (146)
117 cd05804 StaR_like StaR_like; a 28.8 4.4E+02 0.0095 23.8 13.5 28 158-188 146-173 (355)
118 PF09976 TPR_21: Tetratricopep 28.6 3E+02 0.0066 21.9 13.8 28 157-187 115-142 (145)
119 PRK12370 invasion protein regu 28.1 6.2E+02 0.013 25.3 16.8 43 143-188 423-466 (553)
120 PF07575 Nucleopor_Nup85: Nup8 28.0 1E+02 0.0022 31.1 5.2 69 23-98 414-482 (566)
121 PRK04841 transcriptional regul 27.8 7.2E+02 0.016 26.0 12.5 44 139-187 593-636 (903)
122 smart00667 LisH Lissencephaly 27.2 1.1E+02 0.0023 17.8 3.3 21 215-235 6-26 (34)
123 PRK15359 type III secretion sy 26.7 3.4E+02 0.0074 21.8 8.8 91 139-243 13-123 (144)
124 PLN03218 maturation of RBCL 1; 25.8 9.5E+02 0.021 26.7 23.8 89 13-105 369-484 (1060)
125 PRK15359 type III secretion sy 25.5 3.6E+02 0.0078 21.7 9.8 40 139-188 78-117 (144)
126 PF12213 Dpoe2NT: DNA polymera 25.2 1.6E+02 0.0034 21.9 4.4 41 70-110 18-58 (73)
127 PF09577 Spore_YpjB: Sporulati 25.1 4.5E+02 0.0098 23.9 8.2 67 41-107 12-89 (232)
128 TIGR02521 type_IV_pilW type IV 24.2 3.8E+02 0.0081 21.5 17.5 80 139-241 119-198 (234)
129 PRK11189 lipoprotein NlpI; Pro 24.1 4.2E+02 0.0091 24.0 8.1 84 156-243 60-163 (296)
130 KOG0276 Vesicle coat complex C 24.1 2.7E+02 0.0058 29.4 7.1 158 21-221 593-762 (794)
131 TIGR03302 OM_YfiO outer membra 23.9 4E+02 0.0087 22.6 7.5 23 28-50 129-151 (235)
132 TIGR02878 spore_ypjB sporulati 23.6 1E+02 0.0022 28.1 3.7 28 41-68 12-39 (233)
133 PF04190 DUF410: Protein of un 22.5 5.8E+02 0.013 23.1 8.6 94 25-124 1-95 (260)
134 KOG2114 Vacuolar assembly/sort 22.4 1E+03 0.023 26.0 13.3 183 26-245 380-594 (933)
135 PRK15174 Vi polysaccharide exp 22.3 8.6E+02 0.019 25.0 21.8 22 220-241 326-347 (656)
136 PF13424 TPR_12: Tetratricopep 22.3 2.8E+02 0.006 19.2 6.7 54 35-88 6-60 (78)
137 PRK15363 pathogenicity island 22.2 5E+02 0.011 22.2 11.1 96 50-186 31-126 (157)
138 PRK13241 ureA urease subunit g 21.9 2.1E+02 0.0045 22.8 4.7 48 40-89 19-69 (100)
139 KOG2047 mRNA splicing factor [ 21.8 1E+03 0.022 25.5 11.0 158 36-204 250-433 (835)
140 TIGR00193 urease_gam urease, g 21.6 2.2E+02 0.0048 22.7 4.8 48 40-89 19-69 (102)
141 COG3118 Thioredoxin domain-con 21.3 7.2E+02 0.016 23.7 10.9 27 158-187 234-260 (304)
142 PRK13242 ureA urease subunit g 21.3 2.3E+02 0.0049 22.6 4.8 48 40-89 19-69 (100)
143 PF11864 DUF3384: Domain of un 21.2 7.9E+02 0.017 24.1 15.2 183 36-224 66-281 (464)
144 COG2256 MGS1 ATPase related to 21.1 8.4E+02 0.018 24.4 15.4 35 209-243 321-355 (436)
145 KOG2280 Vacuolar assembly/sort 21.1 1.1E+03 0.023 25.6 14.8 152 39-243 442-603 (829)
146 PF10602 RPN7: 26S proteasome 20.5 1.9E+02 0.004 24.7 4.7 70 11-80 89-161 (177)
147 PF04233 Phage_Mu_F: Phage Mu 20.2 2.8E+02 0.006 21.0 5.2 40 13-52 16-55 (112)
148 PF03540 TFIID_30kDa: Transcri 20.2 2.1E+02 0.0046 20.0 4.0 22 83-104 11-32 (51)
149 KOG4648 Uncharacterized conser 20.0 95 0.002 30.5 2.9 22 37-58 100-121 (536)
No 1
>KOG3024 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=2.4e-61 Score=436.53 Aligned_cols=225 Identities=28% Similarity=0.415 Sum_probs=212.7
Q ss_pred CchHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhhCCCCC
Q 024660 12 PPAQENIDKLEKIVNEGNFYGAQQMYKSISARYVAAQRYSEALDLLHAGACLQLKNNQLTCGAELAVSFVEALVKGKVAY 91 (264)
Q Consensus 12 ~~~~r~l~rl~~~i~~G~~YEAhQ~~RTl~~Ry~~~kk~~eAieLL~~GA~~ll~~~Q~~sa~DL~~llvevl~~~~~~~ 91 (264)
.+++|++.|++++|+-|+||||||||||++|||+++|+|++|++|+++||+.|++++|.+||+||+++++|||+++.+..
T Consensus 4 ~~~~R~e~kl~a~~~~~d~Yeahqm~RTl~fR~~~~K~~~~aieL~~~ga~~ffk~~Q~~saaDl~~~~le~~eka~~ad 83 (312)
T KOG3024|consen 4 FTLQRVEGKLRASIELGDYYEAHQMYRTLVFRYTRQKAHEDAIELLYDGALCFFKLKQRGSAADLLVLVLEVLEKAEVAD 83 (312)
T ss_pred hHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHhhH
Confidence 37999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred ChhHHHHHHHHHHhCCCCCCCCCCCCCchHHHHHHHHhhhhhhhhhhhHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHH
Q 024660 92 DNENLDRVRKIYELFPQIPVPHNLEDDDDLHELTEALGAAKLRVEGCSSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLY 171 (264)
Q Consensus 92 ~~~~~~rl~~l~~~~p~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~~~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~~~~ 171 (264)
+..++.|+.+++..+++++|+| ++||++||+||++.|++++|||+||.++|.++|
T Consensus 84 ~~~~~anl~~ll~e~~~~eper-------------------------~~~v~raikWS~~~~~~k~G~p~lH~~la~~l~ 138 (312)
T KOG3024|consen 84 SLLKVANLAELLGEADPSEPER-------------------------KTFVRRAIKWSKEFGEGKYGHPELHALLADKLW 138 (312)
T ss_pred hHHHHHHHHHHHhhcCCCccHH-------------------------HHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHH
Confidence 8889999999999999999987 999999999999998899999999999999999
Q ss_pred hcCCCcChHhhhhhhhcCCChHHHHH-HHHHHHhhcCCCchHHHHHHHHHHHHhcCChhHHHHHHHHHHH----------
Q 024660 172 SESPELDMARVSFHFVRGNNPEKFAS-TIVNFMGKCYPGEDDLAVARAILMYLSLGNMKDANYIMDEVKK---------- 240 (264)
Q Consensus 172 ~e~~~~~~~~A~~Hfl~~~d~~~~a~-~L~ew~~~~~~~e~dlfiaRaVL~~L~l~n~~~A~~~~~~f~~---------- 240 (264)
+++ ++++|++||++|+|++.||. +++.|+.+++.+|.|+|++|+||||||+.|..+|...++.|++
T Consensus 139 ~e~---~~~~a~~HFll~~d~s~~a~~ll~y~~~r~f~~e~d~f~~~aVlq~L~len~~~A~~s~t~yt~~f~~k~~p~~ 215 (312)
T KOG3024|consen 139 TED---NVEEARRHFLLSEDGSKFAYMLLEYSMSRGFKSEPDVFYVQAVLQYLCLENDSSAARSFTTYTSMFNMKDFPMD 215 (312)
T ss_pred hcc---cHHHHHhHhhhcCChHHHHHHHHHHHhhcccccCchHHHHHHHHHHHhhcchHHHHHHHHHHHHhhccccccch
Confidence 999 99999999999999999999 6677999999999999999999999999999999999999999
Q ss_pred --Hhhhh--hcCCCCCchhHHHHHHhcC
Q 024660 241 --QVENK--QLQLQPSDLIQFVFYVLQT 264 (264)
Q Consensus 241 --~~~~~--~~~~~~~PLLNFl~~Ll~t 264 (264)
.+.+. .+.|+.+|||||+||||.|
T Consensus 216 e~~~~~~~k~~~~~~~pllNFl~~Ll~t 243 (312)
T KOG3024|consen 216 EIKHKAGTKNPFPFEYPLLNFLHFLLET 243 (312)
T ss_pred hhcccccccCCCccccchHHHHHHHHHH
Confidence 44322 3356689999999999976
No 2
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=100.00 E-value=7.8e-57 Score=408.79 Aligned_cols=191 Identities=39% Similarity=0.629 Sum_probs=164.8
Q ss_pred HhhhCHHHHHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhhCCCCCChhHHHHHHHHHHhCCCCCCCCCCCCCchHHHH
Q 024660 45 VAAQRYSEALDLLHAGACLQLKNNQLTCGAELAVSFVEALVKGKVAYDNENLDRVRKIYELFPQIPVPHNLEDDDDLHEL 124 (264)
Q Consensus 45 ~~~kk~~eAieLL~~GA~~ll~~~Q~~sa~DL~~llvevl~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~l~~~~~~~~~ 124 (264)
|+++||+||+||||+||..|+++||++||+||+++|||||+++++++|+++++||++|++.+|+++|+|
T Consensus 1 v~~kky~eAidLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r----------- 69 (260)
T PF04190_consen 1 VKQKKYDEAIDLLYSGALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPER----------- 69 (260)
T ss_dssp HHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTH-----------
T ss_pred CccccHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchH-----------
Confidence 689999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred HHHHhhhhhhhhhhhHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHhcCCCcChHhhhhhhhcCCChHHHHH--HHHHH
Q 024660 125 TEALGAAKLRVEGCSSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDMARVSFHFVRGNNPEKFAS--TIVNF 202 (264)
Q Consensus 125 ~~~~~~~~~~~~~~~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~~~d~~~~a~--~L~ew 202 (264)
++|+++||+|| +.|++|+|||+||+++|++||+|+ +|++|++|||+|+|++.++. ++++|
T Consensus 70 --------------~~fi~~ai~WS-~~~~~~~Gdp~LH~~~a~~~~~e~---~~~~A~~Hfl~~~~~~~~~~~~ll~~~ 131 (260)
T PF04190_consen 70 --------------KKFIKAAIKWS-KFGSYKFGDPELHHLLAEKLWKEG---NYYEAERHFLLGTDPSAFAYVMLLEEW 131 (260)
T ss_dssp --------------HHHHHHHHHHH-HTSS-TT--HHHHHHHHHHHHHTT----HHHHHHHHHTS-HHHHHHHHHHHHHH
T ss_pred --------------HHHHHHHHHHH-ccCCCCCCCHHHHHHHHHHHHhhc---cHHHHHHHHHhcCChhHHHHHHHHHHH
Confidence 99999999999 778899999999999999999999 99999999999999998887 88899
Q ss_pred HhhcCCCchHHHHHHHHHHHHhcCChhHHHHHHHHHHHH----hhhhh----cCCCCCchhHHHHHHhcC
Q 024660 203 MGKCYPGEDDLAVARAILMYLSLGNMKDANYIMDEVKKQ----VENKQ----LQLQPSDLIQFVFYVLQT 264 (264)
Q Consensus 203 ~~~~~~~e~dlfiaRaVL~~L~l~n~~~A~~~~~~f~~~----~~~~~----~~~~~~PLLNFl~~Ll~t 264 (264)
+.+|+++|.|+||+||||||||++|+++|+++++.|+++ +|+.. ..|+++|||||+||||+|
T Consensus 132 ~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~~~~~~p~~~~~~~~~~~~~PllnF~~lLl~t 201 (260)
T PF04190_consen 132 STKGYPSEADLFIARAVLQYLCLGNLRDANELFDTFTSKLIESHPKLENSDIEYPPSYPLLNFLQLLLLT 201 (260)
T ss_dssp HHHTSS--HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHHH---EEEEEEEEESS-HHHHHHHHHHHH
T ss_pred HHhcCCcchhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccCcchhccccCCCCCCchHHHHHHHHHH
Confidence 999999999999999999999999999999999999999 44322 245789999999999975
No 3
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.29 E-value=0.002 Score=58.87 Aligned_cols=212 Identities=15% Similarity=0.120 Sum_probs=128.8
Q ss_pred ChhHHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhhCCCCCChhHHHHHHHHHHhCCC
Q 024660 29 NFYGAQQMYKSISARYVAAQRYSEALDLLHAGACLQLKNNQLTCGAELAVSFVEALVKGKVAYDNENLDRVRKIYELFPQ 108 (264)
Q Consensus 29 ~~YEAhQ~~RTl~~Ry~~~kk~~eAieLL~~GA~~ll~~~Q~~sa~DL~~llvevl~~~~~~~~~~~~~rl~~l~~~~p~ 108 (264)
+|-+|.-+|.-..+.|...|+|++|.+.....+....+.+....++........+|.+....--.+.+.+-++++.....
T Consensus 30 ~~e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~~~~~Ai~~~~~A~~~y~~~G~ 109 (282)
T PF14938_consen 30 DYEEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKGDPDEAIECYEKAIEIYREAGR 109 (282)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHCT-
T ss_pred CHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCc
Confidence 77899999999999999999999999999999888888888777777777777888777322112344555565554321
Q ss_pred CCCCCCCCCCchHHHHHHHHhhhhhhhhhhhHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHhcCCCcChHhhhhhhhc
Q 024660 109 IPVPHNLEDDDDLHELTEALGAAKLRVEGCSSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDMARVSFHFVR 188 (264)
Q Consensus 109 ~~~~r~l~~~~~~~~~~~~~~~~~~~~~~~~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~ 188 (264)
++. -..-..++-+.-.-.....+.-..+-.+|+.|=...+ .+....+....+|.++.+.+ +|.+|...|--
T Consensus 110 ---~~~--aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~---~y~~A~~~~e~ 180 (282)
T PF14938_consen 110 ---FSQ--AAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLG---RYEEAIEIYEE 180 (282)
T ss_dssp ---HHH--HHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT----HHHHHHHHHH
T ss_pred ---HHH--HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhC---CHHHHHHHHHH
Confidence 100 0000001111000000122333667777788777654 35566678888899999999 99888877632
Q ss_pred -CCChHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhhhcCCCCCchhHHHHHHh
Q 024660 189 -GNNPEKFASTIVNFMGKCYPGEDDLAVARAILMYLSLGNMKDANYIMDEVKKQVENKQLQLQPSDLIQFVFYVL 262 (264)
Q Consensus 189 -~~d~~~~a~~L~ew~~~~~~~e~dlfiaRaVL~~L~l~n~~~A~~~~~~f~~~~~~~~~~~~~~PLLNFl~~Ll 262 (264)
+...- -+-+..| ...-+..++||.+|+.++.-.|...++.|....| .|.++.=..|+.=||
T Consensus 181 ~~~~~l--~~~l~~~-------~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~----~F~~s~E~~~~~~l~ 242 (282)
T PF14938_consen 181 VAKKCL--ENNLLKY-------SAKEYFLKAILCHLAMGDYVAARKALERYCSQDP----SFASSREYKFLEDLL 242 (282)
T ss_dssp HHHTCC--CHCTTGH-------HHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTST----TSTTSHHHHHHHHHH
T ss_pred HHHHhh--cccccch-------hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC----CCCCcHHHHHHHHHH
Confidence 11000 0001111 1223678899999999999999999999997544 344455555555443
No 4
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.18 E-value=0.48 Score=43.55 Aligned_cols=180 Identities=14% Similarity=0.187 Sum_probs=109.5
Q ss_pred hCHHHHHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhhCCCCCChhHHHHHHHHHHhCCCCCCCCCCCCCchHHHHHHH
Q 024660 48 QRYSEALDLLHAGACLQLKNNQLTCGAELAVSFVEALVKGKVAYDNENLDRVRKIYELFPQIPVPHNLEDDDDLHELTEA 127 (264)
Q Consensus 48 kk~~eAieLL~~GA~~ll~~~Q~~sa~DL~~llvevl~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~l~~~~~~~~~~~~ 127 (264)
.||+||.||+.+++..+==.++|+.|+|--+-.-+..-+++-+= +.-...++-.+.|....|.+
T Consensus 28 ~k~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skh--Daat~YveA~~cykk~~~~e-------------- 91 (288)
T KOG1586|consen 28 NKYEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKH--DAATTYVEAANCYKKVDPEE-------------- 91 (288)
T ss_pred cchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCch--hHHHHHHHHHHHhhccChHH--------------
Confidence 47777777777777666556777777776666666666665222 23345555555555444322
Q ss_pred HhhhhhhhhhhhHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHhc-CCCcChHhhhhhhhcCCC-----hH--------
Q 024660 128 LGAAKLRVEGCSSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSE-SPELDMARVSFHFVRGNN-----PE-------- 193 (264)
Q Consensus 128 ~~~~~~~~~~~~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~~~~~e-~~~~~~~~A~~Hfl~~~d-----~~-------- 193 (264)
-...+.+||.-=+..|....+ ..-|.-||++|=.+ . ++++|..|+=.+.+ .+
T Consensus 92 ----------Av~cL~~aieIyt~~Grf~~a-Ak~~~~iaEiyEsdl~---d~ekaI~~YE~Aae~yk~ees~ssANKC~ 157 (288)
T KOG1586|consen 92 ----------AVNCLEKAIEIYTDMGRFTMA-AKHHIEIAEIYESDLQ---DFEKAIAHYEQAAEYYKGEESVSSANKCL 157 (288)
T ss_pred ----------HHHHHHHHHHHHHhhhHHHHH-HhhhhhHHHHHhhhHH---HHHHHHHHHHHHHHHHcchhhhhhHHHHH
Confidence 156677777776666543233 34688899988776 5 77777777754332 00
Q ss_pred ----HHHHHHHHHHh------------hcCC----CchHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhhhcCCCCCc
Q 024660 194 ----KFASTIVNFMG------------KCYP----GEDDLAVARAILMYLSLGNMKDANYIMDEVKKQVENKQLQLQPSD 253 (264)
Q Consensus 194 ----~~a~~L~ew~~------------~~~~----~e~dlfiaRaVL~~L~l~n~~~A~~~~~~f~~~~~~~~~~~~~~P 253 (264)
.++..|-+.+. -+.+ +-.| +..++-|.+||..+.-.|...++.|.+.-| .|.++.
T Consensus 158 lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~Kd-yflkAgLChl~~~D~v~a~~ALeky~~~dP----~F~dsR 232 (288)
T KOG1586|consen 158 LKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKD-YFLKAGLCHLCKADEVNAQRALEKYQELDP----AFTDSR 232 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHH-HHHHHHHHhHhcccHHHHHHHHHHHHhcCC----cccccH
Confidence 12222222211 0111 2233 678999999999999999999999987544 455677
Q ss_pred hhHHHHHHh
Q 024660 254 LIQFVFYVL 262 (264)
Q Consensus 254 LLNFl~~Ll 262 (264)
-.+|+.=|+
T Consensus 233 Eckflk~L~ 241 (288)
T KOG1586|consen 233 ECKFLKDLL 241 (288)
T ss_pred HHHHHHHHH
Confidence 777776554
No 5
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=93.30 E-value=11 Score=38.74 Aligned_cols=69 Identities=16% Similarity=0.122 Sum_probs=42.4
Q ss_pred CCHHHHHHHHHHHHhcCCCcChHhhhhhhhcCCChHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhcCChhHHHHHHHH
Q 024660 158 GSPELHVMLAEYLYSESPELDMARVSFHFVRGNNPEKFASTIVNFMGKCYPGEDDLAVARAILMYLSLGNMKDANYIMDE 237 (264)
Q Consensus 158 Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~~~d~~~~a~~L~ew~~~~~~~e~dlfiaRaVL~~L~l~n~~~A~~~~~~ 237 (264)
.+|..|..+|.+|.+.| ++.+|..+|-.. . ...|.....+...+ ..+...|+...|...++.
T Consensus 316 ~~~~a~~~La~~l~~~G---~~~eA~~~l~~a----------l----~~~P~~~~~~~~~a-~al~~~G~~deA~~~l~~ 377 (656)
T PRK15174 316 DLPYVRAMYARALRQVG---QYTAASDEFVQL----------A----REKGVTSKWNRYAA-AALLQAGKTSEAESVFEH 377 (656)
T ss_pred CCHHHHHHHHHHHHHCC---CHHHHHHHHHHH----------H----HhCccchHHHHHHH-HHHHHCCCHHHHHHHHHH
Confidence 46778888888888888 888887776211 0 01233333222223 344667888888888777
Q ss_pred HHHHhhh
Q 024660 238 VKKQVEN 244 (264)
Q Consensus 238 f~~~~~~ 244 (264)
..+..|.
T Consensus 378 al~~~P~ 384 (656)
T PRK15174 378 YIQARAS 384 (656)
T ss_pred HHHhChh
Confidence 7766553
No 6
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=93.09 E-value=2.5 Score=40.52 Aligned_cols=78 Identities=13% Similarity=0.126 Sum_probs=50.7
Q ss_pred HHHHHHHHHhcCCCcChHhhhhhhh--cCCChH---HHHHHHHHHHh-hcCCCchHHHHHHHHHHHHh------------
Q 024660 163 HVMLAEYLYSESPELDMARVSFHFV--RGNNPE---KFASTIVNFMG-KCYPGEDDLAVARAILMYLS------------ 224 (264)
Q Consensus 163 H~~la~~~~~e~~~~~~~~A~~Hfl--~~~d~~---~~a~~L~ew~~-~~~~~e~dlfiaRaVL~~L~------------ 224 (264)
--++|.++...| +|..|..++- .-.||+ +...+|.+++. -|.+.|.-.|+.|++=.+..
T Consensus 217 si~lG~v~~~~g---~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie 293 (389)
T COG2956 217 SIILGRVELAKG---DYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIE 293 (389)
T ss_pred hhhhhHHHHhcc---chHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHH
Confidence 346777888889 9999988885 466765 66777888775 46667777788777533322
Q ss_pred -cCChhHHHHHHHHHHHHhh
Q 024660 225 -LGNMKDANYIMDEVKKQVE 243 (264)
Q Consensus 225 -l~n~~~A~~~~~~f~~~~~ 243 (264)
..-...|...+..=+.++|
T Consensus 294 ~~~G~~~Aq~~l~~Ql~r~P 313 (389)
T COG2956 294 LQEGIDAAQAYLTRQLRRKP 313 (389)
T ss_pred HhhChHHHHHHHHHHHhhCC
Confidence 3344555555555444444
No 7
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=92.08 E-value=1.2 Score=43.30 Aligned_cols=43 Identities=21% Similarity=0.233 Sum_probs=37.9
Q ss_pred hHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHhcCCCcChHhhhhhhhc
Q 024660 139 SSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDMARVSFHFVR 188 (264)
Q Consensus 139 ~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~ 188 (264)
.+.++.+=+|-+.+++ +|.|+..+|..|++++ .+.+|+.||=.
T Consensus 311 ~~l~k~~e~~l~~h~~----~p~L~~tLG~L~~k~~---~w~kA~~~lea 353 (400)
T COG3071 311 EPLIKAAEKWLKQHPE----DPLLLSTLGRLALKNK---LWGKASEALEA 353 (400)
T ss_pred hHHHHHHHHHHHhCCC----ChhHHHHHHHHHHHhh---HHHHHHHHHHH
Confidence 6778888889998875 5699999999999999 99999999864
No 8
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=92.03 E-value=3 Score=37.99 Aligned_cols=80 Identities=14% Similarity=0.166 Sum_probs=55.1
Q ss_pred hccCChhHHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhhC-CCC-CChhHHHHHHHH
Q 024660 25 VNEGNFYGAQQMYKSISARYVAAQRYSEALDLLHAGACLQLKNNQLTCGAELAVSFVEALVKG-KVA-YDNENLDRVRKI 102 (264)
Q Consensus 25 i~~G~~YEAhQ~~RTl~~Ry~~~kk~~eAieLL~~GA~~ll~~~Q~~sa~DL~~llvevl~~~-~~~-~~~~~~~rl~~l 102 (264)
.+.|+.++|-+.|-....=| +..++++|++.+.+.+..+.+.|+...++.+..-+-++|++. +-+ ---+...+-.++
T Consensus 66 ~~~~~~~~Aa~~~~~Aa~~~-k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~ 144 (282)
T PF14938_consen 66 EKLGDKFEAAKAYEEAANCY-KKGDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAEL 144 (282)
T ss_dssp HHTT-HHHHHHHHHHHHHHH-HHTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHH-HhhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 44677888888887655444 444889999998888888888999999999988888888887 321 111344555666
Q ss_pred HHh
Q 024660 103 YEL 105 (264)
Q Consensus 103 ~~~ 105 (264)
+..
T Consensus 145 y~~ 147 (282)
T PF14938_consen 145 YEQ 147 (282)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 9
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=91.65 E-value=5.3 Score=38.29 Aligned_cols=41 Identities=15% Similarity=0.169 Sum_probs=33.1
Q ss_pred HHHHHHHHhhhhcCCCCCCCH--HHHHHHHHHHHhcCCCcChHhhhhhhh
Q 024660 140 SFLKAAIKWSIEFGAPKTGSP--ELHVMLAEYLYSESPELDMARVSFHFV 187 (264)
Q Consensus 140 ~fl~~ai~WS~~~g~~~~Gdp--~LH~~la~~~~~e~~~~~~~~A~~Hfl 187 (264)
..++.+=+|-+..+ ++| .++..+|.++++.+ ++.+|+.||=
T Consensus 317 ~~~~~~e~~lk~~p----~~~~~~ll~sLg~l~~~~~---~~~~A~~~le 359 (409)
T TIGR00540 317 KLEKLIEKQAKNVD----DKPKCCINRALGQLLMKHG---EFIEAADAFK 359 (409)
T ss_pred HHHHHHHHHHHhCC----CChhHHHHHHHHHHHHHcc---cHHHHHHHHH
Confidence 33444556776653 778 99999999999999 9999999997
No 10
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=91.24 E-value=17 Score=36.32 Aligned_cols=38 Identities=16% Similarity=0.327 Sum_probs=22.1
Q ss_pred HHHHhccCChhHHHHHHHHHHHH--------------HHhhhCHHHHHHHHH
Q 024660 21 LEKIVNEGNFYGAQQMYKSISAR--------------YVAAQRYSEALDLLH 58 (264)
Q Consensus 21 l~~~i~~G~~YEAhQ~~RTl~~R--------------y~~~kk~~eAieLL~ 58 (264)
....+..|+|=+|.+.+..+..+ +...++|++|++++.
T Consensus 234 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 285 (899)
T TIGR02917 234 ATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQ 285 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHH
Confidence 34456667777777776655432 234566666666654
No 11
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=90.15 E-value=2.7 Score=40.53 Aligned_cols=139 Identities=13% Similarity=0.097 Sum_probs=91.3
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHHHHHHhhhCHHHHH----HHHHHHHHHHHHcCCcccHHHHHHHHHHHHhhCCCCC
Q 024660 16 ENIDKLEKIVNEGNFYGAQQMYKSISARYVAAQRYSEAL----DLLHAGACLQLKNNQLTCGAELAVSFVEALVKGKVAY 91 (264)
Q Consensus 16 r~l~rl~~~i~~G~~YEAhQ~~RTl~~Ry~~~kk~~eAi----eLL~~GA~~ll~~~Q~~sa~DL~~llvevl~~~~~~~ 91 (264)
-+.++.+..++...+=++.+.|+.+.+.--...+-++.+ +.+.+-...|.+.|+...-.||...+=.-+..-+.
T Consensus 6 ~~~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~K-- 83 (411)
T KOG1463|consen 6 SLLERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSK-- 83 (411)
T ss_pred HHHHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhh--
Confidence 347888888999888899999999888532233333444 44455556777889988888887666555554432
Q ss_pred ChhHHHHHHHHHHhCCCCCCCCCCCCCchHHHHHHHHhhhhhhhhhhhHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHH
Q 024660 92 DNENLDRVRKIYELFPQIPVPHNLEDDDDLHELTEALGAAKLRVEGCSSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLY 171 (264)
Q Consensus 92 ~~~~~~rl~~l~~~~p~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~~~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~~~~ 171 (264)
.....-++.|+..|+..+. ++ + ....+.+.||.|..... ..|=.-.|.-.+...|+
T Consensus 84 -akaaKlvR~Lvd~~~~~~~--~~----------------~----~~i~l~~~cIeWA~~ek-RtFLRq~Learli~Ly~ 139 (411)
T KOG1463|consen 84 -AKAAKLVRSLVDMFLKIDD--GT----------------G----DQIELCTECIEWAKREK-RTFLRQSLEARLIRLYN 139 (411)
T ss_pred -HHHHHHHHHHHHHHccCCC--Cc----------------c----hHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHH
Confidence 1233456667777765543 22 1 11778889999998652 24455567777788888
Q ss_pred hcCCCcChHhhh
Q 024660 172 SESPELDMARVS 183 (264)
Q Consensus 172 ~e~~~~~~~~A~ 183 (264)
.-+ .|.+|.
T Consensus 140 d~~---~YteAl 148 (411)
T KOG1463|consen 140 DTK---RYTEAL 148 (411)
T ss_pred hhH---HHHHHH
Confidence 777 777664
No 12
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=89.91 E-value=11 Score=36.18 Aligned_cols=43 Identities=19% Similarity=0.243 Sum_probs=36.5
Q ss_pred hHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHhcCCCcChHhhhhhhhc
Q 024660 139 SSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDMARVSFHFVR 188 (264)
Q Consensus 139 ~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~ 188 (264)
.+-+..+=+|-+.++ .||++|..+|..+...+ ++.+|+.||-.
T Consensus 311 ~~al~~~e~~lk~~P----~~~~l~l~lgrl~~~~~---~~~~A~~~le~ 353 (398)
T PRK10747 311 EQLEKVLRQQIKQHG----DTPLLWSTLGQLLMKHG---EWQEASLAFRA 353 (398)
T ss_pred HHHHHHHHHHHhhCC----CCHHHHHHHHHHHHHCC---CHHHHHHHHHH
Confidence 445666777888764 79999999999999999 99999999954
No 13
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=89.24 E-value=6.3 Score=37.51 Aligned_cols=136 Identities=20% Similarity=0.157 Sum_probs=90.4
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHHHHHhh--hCHHHHHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhhCCCCCChhH
Q 024660 18 IDKLEKIVNEGNFYGAQQMYKSISARYVAA--QRYSEALDLLHAGACLQLKNNQLTCGAELAVSFVEALVKGKVAYDNEN 95 (264)
Q Consensus 18 l~rl~~~i~~G~~YEAhQ~~RTl~~Ry~~~--kk~~eAieLL~~GA~~ll~~~Q~~sa~DL~~llvevl~~~~~~~~~~~ 95 (264)
|+--...+.+.++=+|-|.|+.+...=+.. +--+|--.-+.+=...+...|.+++-.|++...-+.+..... ...
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk---~k~ 83 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTK---PKI 83 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcc---hhH
Confidence 555567788999999999999888773222 111222223344456788899999999998777676665532 234
Q ss_pred HHHHHHHHHhCCCCCCCCCCCCCchHHHHHHHHhhhhhhhhhhhHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHhcCC
Q 024660 96 LDRVRKIYELFPQIPVPHNLEDDDDLHELTEALGAAKLRVEGCSSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESP 175 (264)
Q Consensus 96 ~~rl~~l~~~~p~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~~~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~~~~~e~~ 175 (264)
..-|..||..||.... ++ +...+..+++|+|..... .++=.-+|.-.+...+++.|
T Consensus 84 ~KiirtLiekf~~~~d--sl--------------------~dqi~v~~~~iewA~rEk-r~fLr~~Le~Kli~l~y~~~- 139 (421)
T COG5159 84 TKIIRTLIEKFPYSSD--SL--------------------EDQIKVLTALIEWADREK-RKFLRLELECKLIYLLYKTG- 139 (421)
T ss_pred HHHHHHHHHhcCCCCc--cH--------------------HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcc-
Confidence 4667788899987654 44 112677888899998652 24445566666777777777
Q ss_pred CcChHhh
Q 024660 176 ELDMARV 182 (264)
Q Consensus 176 ~~~~~~A 182 (264)
.|.+|
T Consensus 140 --~Ysda 144 (421)
T COG5159 140 --KYSDA 144 (421)
T ss_pred --cHHHH
Confidence 66554
No 14
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=89.17 E-value=7.4 Score=41.32 Aligned_cols=44 Identities=25% Similarity=0.329 Sum_probs=33.4
Q ss_pred hHHHHHHHHHHhccCChhHHHHHHHHH------HHHHHhhhCHHHHHHHH
Q 024660 14 AQENIDKLEKIVNEGNFYGAQQMYKSI------SARYVAAQRYSEALDLL 57 (264)
Q Consensus 14 ~~r~l~rl~~~i~~G~~YEAhQ~~RTl------~~Ry~~~kk~~eAieLL 57 (264)
+.-.+.+-+..=+.|.|=||.|+|-|+ +.-|-+-|.+++.|.|.
T Consensus 824 ~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv 873 (1636)
T KOG3616|consen 824 ISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLV 873 (1636)
T ss_pred HHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHH
Confidence 455677888888899999999999886 44566667777777665
No 15
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=88.62 E-value=31 Score=36.10 Aligned_cols=80 Identities=19% Similarity=0.243 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHhcCCCcChHhhhhhhhc--CCCh---H---HHHHHHH---------HHHh---hcCCCchHHHHHHHHH
Q 024660 161 ELHVMLAEYLYSESPELDMARVSFHFVR--GNNP---E---KFASTIV---------NFMG---KCYPGEDDLAVARAIL 220 (264)
Q Consensus 161 ~LH~~la~~~~~e~~~~~~~~A~~Hfl~--~~d~---~---~~a~~L~---------ew~~---~~~~~e~dlfiaRaVL 220 (264)
+.+...|.++...+ ++.+|+..|-- ..+| . .+|.++. +.+. .-.|...++.+.++.
T Consensus 360 ~a~~~~a~~l~~~g---~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~- 435 (765)
T PRK10049 360 QGQSLLSQVAKYSN---DLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAW- 435 (765)
T ss_pred HHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHH-
Confidence 46677777777777 77777666542 2222 1 1222110 0011 234677778888887
Q ss_pred HHHhcCChhHHHHHHHHHHHHhhh
Q 024660 221 MYLSLGNMKDANYIMDEVKKQVEN 244 (264)
Q Consensus 221 ~~L~l~n~~~A~~~~~~f~~~~~~ 244 (264)
.++.+++...|..+++..++..|.
T Consensus 436 ~al~~~~~~~A~~~~~~ll~~~Pd 459 (765)
T PRK10049 436 TALDLQEWRQMDVLTDDVVAREPQ 459 (765)
T ss_pred HHHHhCCHHHHHHHHHHHHHhCCC
Confidence 789999999999999999987663
No 16
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=88.06 E-value=0.77 Score=27.52 Aligned_cols=26 Identities=15% Similarity=0.163 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHhcCCCcChHhhhhhhhc
Q 024660 160 PELHVMLAEYLYSESPELDMARVSFHFVR 188 (264)
Q Consensus 160 p~LH~~la~~~~~e~~~~~~~~A~~Hfl~ 188 (264)
|+.+..+|.++++.+ ++.+|..||-.
T Consensus 1 a~~~~~lg~~~~~~~---~~~~A~~~~~~ 26 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLG---NYEEAIEYFEK 26 (34)
T ss_dssp HHHHHHHHHHHHHTT----HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhC---CHHHHHHHHHH
Confidence 678999999999999 99999999854
No 17
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=87.97 E-value=31 Score=34.54 Aligned_cols=65 Identities=15% Similarity=0.175 Sum_probs=42.4
Q ss_pred CCCHHHHHHHHHHHHhcCCCcChHhhhhhhhcCCChHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhcCChhHHHHHHH
Q 024660 157 TGSPELHVMLAEYLYSESPELDMARVSFHFVRGNNPEKFASTIVNFMGKCYPGEDDLAVARAILMYLSLGNMKDANYIMD 236 (264)
Q Consensus 157 ~Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~~~d~~~~a~~L~ew~~~~~~~e~dlfiaRaVL~~L~l~n~~~A~~~~~ 236 (264)
-.+|.+...+|.+++..| ++.+|..+|-. ....+ |+..+++.. .+..|...|+...|..++.
T Consensus 834 ~~~~~~~~~~~~~~~~~g---~~~~A~~~~~~-------------a~~~~-~~~~~~~~~-l~~~~~~~g~~~~A~~~~~ 895 (899)
T TIGR02917 834 PNIPAILDTLGWLLVEKG---EADRALPLLRK-------------AVNIA-PEAAAIRYH-LALALLATGRKAEARKELD 895 (899)
T ss_pred CCCcHHHHHHHHHHHHcC---CHHHHHHHHHH-------------HHhhC-CCChHHHHH-HHHHHHHcCCHHHHHHHHH
Confidence 357788888888888888 88887776531 11112 333343333 3445677899999998887
Q ss_pred HHH
Q 024660 237 EVK 239 (264)
Q Consensus 237 ~f~ 239 (264)
..+
T Consensus 896 ~~~ 898 (899)
T TIGR02917 896 KLL 898 (899)
T ss_pred HHh
Confidence 654
No 18
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=87.83 E-value=22 Score=32.75 Aligned_cols=81 Identities=16% Similarity=0.239 Sum_probs=47.7
Q ss_pred CCHHHHHHHHHHHHhcCCCcChHhhhhhhhcCC--ChHHH---HHHHHHHH-hh---------------cCCCchHHHHH
Q 024660 158 GSPELHVMLAEYLYSESPELDMARVSFHFVRGN--NPEKF---ASTIVNFM-GK---------------CYPGEDDLAVA 216 (264)
Q Consensus 158 Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~~~--d~~~~---a~~L~ew~-~~---------------~~~~e~dlfia 216 (264)
.++..+..+|..|.+.| ++.+|..+|-..- +|... ...+...+ .. ..|.. +.+.
T Consensus 212 ~~~~~~~~la~~~~~~g---~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~-~~~~- 286 (389)
T PRK11788 212 QCVRASILLGDLALAQG---DYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGA-DLLL- 286 (389)
T ss_pred CCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-hHHH-
Confidence 35678899999999999 9999988876532 33211 11111111 11 12221 2332
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHHhh
Q 024660 217 RAILMYLSLGNMKDANYIMDEVKKQVE 243 (264)
Q Consensus 217 RaVL~~L~l~n~~~A~~~~~~f~~~~~ 243 (264)
..+-.+.-.++...|..++...++..|
T Consensus 287 ~la~~~~~~g~~~~A~~~l~~~l~~~P 313 (389)
T PRK11788 287 ALAQLLEEQEGPEAAQALLREQLRRHP 313 (389)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCc
Confidence 223335557889999998888777543
No 19
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=87.34 E-value=5.6 Score=27.57 Aligned_cols=64 Identities=16% Similarity=0.224 Sum_probs=49.2
Q ss_pred CHHHHHHHHHHHHhcCCCcChHhhhhhhhcCCChHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhcC-ChhHHHHHHHH
Q 024660 159 SPELHVMLAEYLYSESPELDMARVSFHFVRGNNPEKFASTIVNFMGKCYPGEDDLAVARAILMYLSLG-NMKDANYIMDE 237 (264)
Q Consensus 159 dp~LH~~la~~~~~e~~~~~~~~A~~Hfl~~~d~~~~a~~L~ew~~~~~~~e~dlfiaRaVL~~L~l~-n~~~A~~~~~~ 237 (264)
+|+.+...|..++..+ +|.+|..+|-.+- .. .|+..+.+..+++. |...+ +...|...++.
T Consensus 2 ~a~~~~~~g~~~~~~~---~~~~A~~~~~~ai-------------~~-~p~~~~~~~~~g~~-~~~~~~~~~~A~~~~~~ 63 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQG---DYEEAIEYFEKAI-------------EL-DPNNAEAYYNLGLA-YMKLGKDYEEAIEDFEK 63 (69)
T ss_dssp SHHHHHHHHHHHHHTT---HHHHHHHHHHHHH-------------HH-STTHHHHHHHHHHH-HHHTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcC---CHHHHHHHHHHHH-------------Hc-CCCCHHHHHHHHHH-HHHhCccHHHHHHHHHH
Confidence 4788999999999999 9999988874321 11 36777788888877 66777 78888888887
Q ss_pred HHH
Q 024660 238 VKK 240 (264)
Q Consensus 238 f~~ 240 (264)
.++
T Consensus 64 al~ 66 (69)
T PF13414_consen 64 ALK 66 (69)
T ss_dssp HHH
T ss_pred HHH
Confidence 665
No 20
>PLN03218 maturation of RBCL 1; Provisional
Probab=83.67 E-value=75 Score=35.01 Aligned_cols=80 Identities=6% Similarity=-0.066 Sum_probs=44.8
Q ss_pred CCHHHHHHHHHHHHhcCCCcChHhhhhhhhc----CCCh--HHHHHHHHHHHhhcCC--------------CchHHHHHH
Q 024660 158 GSPELHVMLAEYLYSESPELDMARVSFHFVR----GNNP--EKFASTIVNFMGKCYP--------------GEDDLAVAR 217 (264)
Q Consensus 158 Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~----~~d~--~~~a~~L~ew~~~~~~--------------~e~dlfiaR 217 (264)
-+......+...|.+.| ++.+|..-|-. +-.| ..+..++.-+...|.. -.+|.+.-.
T Consensus 682 pd~~tynsLI~ay~k~G---~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~ 758 (1060)
T PLN03218 682 LGTVSYSSLMGACSNAK---NWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYS 758 (1060)
T ss_pred CCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 35667788888888888 88888766531 1222 2433333322222211 223434444
Q ss_pred HHHHHHh-cCChhHHHHHHHHHHH
Q 024660 218 AILMYLS-LGNMKDANYIMDEVKK 240 (264)
Q Consensus 218 aVL~~L~-l~n~~~A~~~~~~f~~ 240 (264)
.++.-++ .++++.|..++....+
T Consensus 759 sLL~a~~k~G~le~A~~l~~~M~k 782 (1060)
T PLN03218 759 ILLVASERKDDADVGLDLLSQAKE 782 (1060)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4444333 6788888888877665
No 21
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=83.61 E-value=35 Score=31.08 Aligned_cols=100 Identities=17% Similarity=0.193 Sum_probs=51.5
Q ss_pred CHHHHHHHHHHHHhcCCCcChHhhhhhh--hcCCChHHHHHHHHHHH-hhcCCCchHHHHHHHHHHHHhcC-C---hhHH
Q 024660 159 SPELHVMLAEYLYSESPELDMARVSFHF--VRGNNPEKFASTIVNFM-GKCYPGEDDLAVARAILMYLSLG-N---MKDA 231 (264)
Q Consensus 159 dp~LH~~la~~~~~e~~~~~~~~A~~Hf--l~~~d~~~~a~~L~ew~-~~~~~~e~dlfiaRaVL~~L~l~-n---~~~A 231 (264)
+-.|.+++.++-+.+. ++..+..|+ +...++..-+..+..+. ....+++.+ ++..+|+-.+-+. + ....
T Consensus 141 ~~~L~~mi~~~~~~e~---~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~-~~e~~vl~~~~~~~~~~~~~~~ 216 (278)
T PF08631_consen 141 EEILMRMIRSVDHSES---NFDSILHHIKQLAEKSPELAAFCLDYLLLNRFKSSEDQ-WLEKLVLTRVLLTTQSKDLSSS 216 (278)
T ss_pred HHHHHHHHHhcccccc---hHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCChhH-HHHHHHHHHHHHHcCCccccch
Confidence 3466677766666666 777666665 33444544444444443 456666665 6666666554422 2 1222
Q ss_pred --HHHHHHHHHHhhhhhcCCCCCchhHHHHHHh
Q 024660 232 --NYIMDEVKKQVENKQLQLQPSDLIQFVFYVL 262 (264)
Q Consensus 232 --~~~~~~f~~~~~~~~~~~~~~PLLNFl~~Ll 262 (264)
.+-++.|+..+......+.+.+..+-++-||
T Consensus 217 ~~i~~l~~~~~~v~~~~~~~ls~~~~~a~~~LL 249 (278)
T PF08631_consen 217 EKIESLEELLSIVEHSLGKQLSAEAASAIHTLL 249 (278)
T ss_pred hHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 2333555554443333444455555555443
No 22
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=83.33 E-value=58 Score=33.42 Aligned_cols=166 Identities=10% Similarity=0.009 Sum_probs=95.1
Q ss_pred HHHHHHHHHhhhCHHHHHHHHHH-----------HHHHHHHcCCcccHHHHHHHHHHHHhhCCCCCChhHHHHHHHHHHh
Q 024660 37 YKSISARYVAAQRYSEALDLLHA-----------GACLQLKNNQLTCGAELAVSFVEALVKGKVAYDNENLDRVRKIYEL 105 (264)
Q Consensus 37 ~RTl~~Ry~~~kk~~eAieLL~~-----------GA~~ll~~~Q~~sa~DL~~llvevl~~~~~~~~~~~~~rl~~l~~~ 105 (264)
|-++..-|.+.|++++|.+++-. =...+.++|++..|-++-.. +.+.++++|.....-++..+..
T Consensus 262 ~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~----M~~~g~~pd~~t~~~ll~a~~~ 337 (697)
T PLN03081 262 SCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYE----MRDSGVSIDQFTFSIMIRIFSR 337 (697)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHH----HHHcCCCCCHHHHHHHHHHHHh
Confidence 46778889999999999988752 22345566777666555433 3567788887777766666654
Q ss_pred CCCCCCCCCCCCCchHHHHHHHHhhhhhhhhhhhHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHhcCCCcChHhhhhh
Q 024660 106 FPQIPVPHNLEDDDDLHELTEALGAAKLRVEGCSSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDMARVSFH 185 (264)
Q Consensus 106 ~p~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~~~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~~~~~e~~~~~~~~A~~H 185 (264)
...-+ .-..+...+++ .| ...|......+...|.+.| ++.+|+.-
T Consensus 338 ~g~~~--------------------------~a~~i~~~m~~----~g--~~~d~~~~~~Li~~y~k~G---~~~~A~~v 382 (697)
T PLN03081 338 LALLE--------------------------HAKQAHAGLIR----TG--FPLDIVANTALVDLYSKWG---RMEDARNV 382 (697)
T ss_pred ccchH--------------------------HHHHHHHHHHH----hC--CCCCeeehHHHHHHHHHCC---CHHHHHHH
Confidence 32111 01223333332 22 1235567778888888888 88888877
Q ss_pred hhcCCCh--HHHHHHHHHHHhhcCC--------------CchHHHHHHHHHHHHh-cCChhHHHHHHHHHHHH
Q 024660 186 FVRGNNP--EKFASTIVNFMGKCYP--------------GEDDLAVARAILMYLS-LGNMKDANYIMDEVKKQ 241 (264)
Q Consensus 186 fl~~~d~--~~~a~~L~ew~~~~~~--------------~e~dlfiaRaVL~~L~-l~n~~~A~~~~~~f~~~ 241 (264)
|---..+ ..+-.|+.-+...|.. -.+|...--+||.-++ .|.++.|..+|+...+.
T Consensus 383 f~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~ 455 (697)
T PLN03081 383 FDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSEN 455 (697)
T ss_pred HHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHh
Confidence 6433222 2333333322222211 2333333444554333 66788888888877654
No 23
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=82.33 E-value=0.84 Score=33.54 Aligned_cols=41 Identities=17% Similarity=0.248 Sum_probs=29.6
Q ss_pred HHHHHhhhhcCCCCCCCHHHHHHHHHHHHhcCCCcChHhhhhhhh
Q 024660 143 KAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDMARVSFHFV 187 (264)
Q Consensus 143 ~~ai~WS~~~g~~~~Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl 187 (264)
.+|+.|..+. ....++++.|.++|+++++-+ +|.+|..||-
T Consensus 42 ~~A~~~~~~~-~~~~~~~~~~~l~a~~~~~l~---~y~eAi~~l~ 82 (84)
T PF12895_consen 42 EEAIELLQKL-KLDPSNPDIHYLLARCLLKLG---KYEEAIKALE 82 (84)
T ss_dssp HHHHHHHHCH-THHHCHHHHHHHHHHHHHHTT----HHHHHHHHH
T ss_pred HHHHHHHHHh-CCCCCCHHHHHHHHHHHHHhC---CHHHHHHHHh
Confidence 4456666541 112356899999999999999 9999999873
No 24
>PRK00794 flbT flagellar biosynthesis repressor FlbT; Reviewed
Probab=81.84 E-value=2 Score=35.80 Aligned_cols=32 Identities=16% Similarity=0.460 Sum_probs=28.0
Q ss_pred CchHHHHHHHHHHhccCChhHHHHHHHHHHHH
Q 024660 12 PPAQENIDKLEKIVNEGNFYGAQQMYKSISAR 43 (264)
Q Consensus 12 ~~~~r~l~rl~~~i~~G~~YEAhQ~~RTl~~R 43 (264)
|.+-..+..+...|.+|+||+|...+|.++.+
T Consensus 91 p~~~~~l~~i~~~V~~g~~y~ALk~lR~L~~~ 122 (132)
T PRK00794 91 PDILAGLKAIDELVEAGRYYEALKALRGLYPI 122 (132)
T ss_pred HHHHHHHHHHHHHHHCCcHHHHHHHHHHhhHH
Confidence 45557888999999999999999999999865
No 25
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.51 E-value=11 Score=39.71 Aligned_cols=171 Identities=12% Similarity=0.088 Sum_probs=84.7
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHcCCcccHHHHHHHHH-HHHhhCCCCCCh-hH
Q 024660 18 IDKLEKIVNEGNFYGAQQMYKSISARYVAAQRYSEALDLLHAGACLQLKNNQLTCGAELAVSFV-EALVKGKVAYDN-EN 95 (264)
Q Consensus 18 l~rl~~~i~~G~~YEAhQ~~RTl~~Ry~~~kk~~eAieLL~~GA~~ll~~~Q~~sa~DL~~llv-evl~~~~~~~~~-~~ 95 (264)
...++=.++-+.||||.-+.+...-+--+-. -.++----.--|+..|++.+|+=++-.|. +...+=...|-. ..
T Consensus 360 ~Dhi~Wll~~k~yeeAl~~~k~~~~~~~~~~----i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e 435 (846)
T KOG2066|consen 360 EDHIDWLLEKKKYEEALDAAKASIGNEERFV----IKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAE 435 (846)
T ss_pred chhHHHHHHhhHHHHHHHHHHhccCCccccc----hHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhcc
Confidence 4556667777888888877654322211100 01111111123455566666665554443 211111111110 12
Q ss_pred HHHHHHHHHhCCCCCCCCCCCCCchHHHHHHHHhhhhhhhhhhhHHHHHHHHhhhhcCCC------------C-CCCHHH
Q 024660 96 LDRVRKIYELFPQIPVPHNLEDDDDLHELTEALGAAKLRVEGCSSFLKAAIKWSIEFGAP------------K-TGSPEL 162 (264)
Q Consensus 96 ~~rl~~l~~~~p~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~~~~fl~~ai~WS~~~g~~------------~-~Gdp~L 162 (264)
++.+..|... +|..|+| |.+. . .|-+.++=-- .-.+.|.+..=.|+...=.. + .-...|
T Consensus 436 ~~~l~~Ia~~-lPt~~~r-L~p~--v---YemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L 507 (846)
T KOG2066|consen 436 LDQLTDIAPY-LPTGPPR-LKPL--V---YEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTAL 507 (846)
T ss_pred ccccchhhcc-CCCCCcc-cCch--H---HHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhH
Confidence 2344455544 4444554 2110 0 1111111000 11267777777787643110 1 223368
Q ss_pred HHHHHHHHHhcCCCcChHhhhhhhhcCCChHHHHHHHHHHH
Q 024660 163 HVMLAEYLYSESPELDMARVSFHFVRGNNPEKFASTIVNFM 203 (264)
Q Consensus 163 H~~la~~~~~e~~~~~~~~A~~Hfl~~~d~~~~a~~L~ew~ 203 (264)
-..||..|..++ +|..|.+|++.+.+.+.|--....|.
T Consensus 508 ~e~La~LYl~d~---~Y~~Al~~ylklk~~~vf~lI~k~nL 545 (846)
T KOG2066|consen 508 LEVLAHLYLYDN---KYEKALPIYLKLQDKDVFDLIKKHNL 545 (846)
T ss_pred HHHHHHHHHHcc---ChHHHHHHHHhccChHHHHHHHHHhh
Confidence 888999999999 99999999999999765433333353
No 26
>PRK12791 flbT flagellar biosynthesis repressor FlbT; Reviewed
Probab=80.86 E-value=1.9 Score=35.83 Aligned_cols=32 Identities=25% Similarity=0.446 Sum_probs=27.8
Q ss_pred CchHHHHHHHHHHhccCChhHHHHHHHHHHHH
Q 024660 12 PPAQENIDKLEKIVNEGNFYGAQQMYKSISAR 43 (264)
Q Consensus 12 ~~~~r~l~rl~~~i~~G~~YEAhQ~~RTl~~R 43 (264)
|.+...+..+...|.+|+||+|...+|.++-+
T Consensus 88 p~~~~~l~~~~~~v~~g~~Y~ALK~~R~Li~~ 119 (131)
T PRK12791 88 PSAWPIIEAINNHILNGDLYKALKELRKLIAR 119 (131)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHhHHH
Confidence 34567788899999999999999999999865
No 27
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=79.48 E-value=51 Score=30.34 Aligned_cols=80 Identities=10% Similarity=0.151 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHhcCCCcChHhhhhhhhcCC--ChH------HHHHHHHH---------HHhh---cCCCchHHHHHHHHH
Q 024660 161 ELHVMLAEYLYSESPELDMARVSFHFVRGN--NPE------KFASTIVN---------FMGK---CYPGEDDLAVARAIL 220 (264)
Q Consensus 161 ~LH~~la~~~~~e~~~~~~~~A~~Hfl~~~--d~~------~~a~~L~e---------w~~~---~~~~e~dlfiaRaVL 220 (264)
.++..+|..+.+.+ ++.+|..+|-..- +|. .++..... ++.+ ..|......+.+.+-
T Consensus 181 ~~~~~la~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~ 257 (389)
T PRK11788 181 HFYCELAQQALARG---DLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLME 257 (389)
T ss_pred HHHHHHHHHHHhCC---CHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHH
Confidence 45667888999989 8888888876421 222 12222111 0000 112221222344445
Q ss_pred HHHhcCChhHHHHHHHHHHHHhh
Q 024660 221 MYLSLGNMKDANYIMDEVKKQVE 243 (264)
Q Consensus 221 ~~L~l~n~~~A~~~~~~f~~~~~ 243 (264)
-|...++.+.|...+....+..|
T Consensus 258 ~~~~~g~~~~A~~~l~~~~~~~p 280 (389)
T PRK11788 258 CYQALGDEAEGLEFLRRALEEYP 280 (389)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC
Confidence 56678999999998888776543
No 28
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=79.31 E-value=2.6 Score=24.65 Aligned_cols=24 Identities=21% Similarity=0.278 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHhcCCCcChHhhhhhh
Q 024660 160 PELHVMLAEYLYSESPELDMARVSFHF 186 (264)
Q Consensus 160 p~LH~~la~~~~~e~~~~~~~~A~~Hf 186 (264)
|..|..+|..++..| ++.+|+.++
T Consensus 1 ~~a~~~la~~~~~~G---~~~eA~~~l 24 (26)
T PF07721_consen 1 PRARLALARALLAQG---DPDEAERLL 24 (26)
T ss_pred CHHHHHHHHHHHHcC---CHHHHHHHH
Confidence 567899999999999 999999875
No 29
>PF07378 FlbT: Flagellar protein FlbT; InterPro: IPR009967 This family consists of several FlbT proteins. FlbT is a post-transcriptional repressor function in flagellum biogenesis. FlbT is associated with the 5' untranslated region (UTR) of fljK (25 kDa flagellin) mRNA and that this association requires a predicted loop structure in the transcript. Mutations within this loop abolish FlbT association and result in increased mRNA stability. It is therefore thought that FlbT promotes the degradation of flagellin mRNA by associating with the 5' UTR [].; GO: 0048027 mRNA 5'-UTR binding, 0006402 mRNA catabolic process, 0045718 negative regulation of flagellum assembly
Probab=79.15 E-value=2.7 Score=34.72 Aligned_cols=33 Identities=24% Similarity=0.507 Sum_probs=28.7
Q ss_pred CCchHHHHHHHHHHhccCChhHHHHHHHHHHHH
Q 024660 11 LPPAQENIDKLEKIVNEGNFYGAQQMYKSISAR 43 (264)
Q Consensus 11 ~~~~~r~l~rl~~~i~~G~~YEAhQ~~RTl~~R 43 (264)
.|..-..+..+...|.+|+||+|...+|.++-+
T Consensus 88 ~p~~~~~l~~~~~~v~~g~~y~ALk~~R~L~~~ 120 (126)
T PF07378_consen 88 DPDAREGLDEANELVEAGRYYKALKALRKLIPY 120 (126)
T ss_pred CHHHHHHHHHHHHHHHCCcHHHHHHHHHHhHHH
Confidence 345677889999999999999999999999864
No 30
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=78.01 E-value=15 Score=33.76 Aligned_cols=70 Identities=21% Similarity=0.361 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHhcCCCcChHhhhhhhhcCCChHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 024660 160 PELHVMLAEYLYSESPELDMARVSFHFVRGNNPEKFASTIVNFMGKCYPGEDDLAVARAILMYLSLGNMKDANYIMDEVK 239 (264)
Q Consensus 160 p~LH~~la~~~~~e~~~~~~~~A~~Hfl~~~d~~~~a~~L~ew~~~~~~~e~dlfiaRaVL~~L~l~n~~~A~~~~~~f~ 239 (264)
|..|.++|..|+..+ ++.+|..+| ..++-.| .. .+.-.| .+.+....|..+++...|...++..+
T Consensus 180 ~~A~y~LG~~y~~~g---~~~~A~~~f---------~~vv~~y-P~-s~~~~d-Al~klg~~~~~~g~~~~A~~~~~~vi 244 (263)
T PRK10803 180 PNANYWLGQLNYNKG---KKDDAAYYF---------ASVVKNY-PK-SPKAAD-AMFKVGVIMQDKGDTAKAKAVYQQVI 244 (263)
T ss_pred HHHHHHHHHHHHHcC---CHHHHHHHH---------HHHHHHC-CC-CcchhH-HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 789999999999999 999998774 3333333 11 112223 33333444567899999999999999
Q ss_pred HHhhh
Q 024660 240 KQVEN 244 (264)
Q Consensus 240 ~~~~~ 244 (264)
+..|+
T Consensus 245 ~~yP~ 249 (263)
T PRK10803 245 KKYPG 249 (263)
T ss_pred HHCcC
Confidence 88764
No 31
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=77.06 E-value=9.7 Score=34.05 Aligned_cols=146 Identities=17% Similarity=0.108 Sum_probs=55.0
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHHHH-------------HhhhCHHHHHHHHHHHHHHHHHcCCcccHHHHHHHHHHHH
Q 024660 18 IDKLEKIVNEGNFYGAQQMYKSISARY-------------VAAQRYSEALDLLHAGACLQLKNNQLTCGAELAVSFVEAL 84 (264)
Q Consensus 18 l~rl~~~i~~G~~YEAhQ~~RTl~~Ry-------------~~~kk~~eAieLL~~GA~~ll~~~Q~~sa~DL~~llvevl 84 (264)
..++-.-+..|+|-+|.++++..+.|. ...++++++.+++.+.. +.........+-..+-.++
T Consensus 81 ~~~l~~l~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~----~~~~~~~~~~~~~~~a~~~ 156 (280)
T PF13429_consen 81 YERLIQLLQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLE----ELPAAPDSARFWLALAEIY 156 (280)
T ss_dssp -------------------------------------H-HHHTT-HHHHHHHHHHHH----H-T---T-HHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHH----hccCCCCCHHHHHHHHHHH
Confidence 334444467778888877776655443 34455666665555422 2222223344444444666
Q ss_pred hhCCCCCChhHHHHHHHHHHhCCCCCCCCCCCCCchHHHHHHHHhhhhhhhhhhhHHHHHHHHhhhhcCCCCCCCHHHHH
Q 024660 85 VKGKVAYDNENLDRVRKIYELFPQIPVPHNLEDDDDLHELTEALGAAKLRVEGCSSFLKAAIKWSIEFGAPKTGSPELHV 164 (264)
Q Consensus 85 ~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~~~~fl~~ai~WS~~~g~~~~Gdp~LH~ 164 (264)
.+.|-+ ++.+.-+.+.++..|.+...+ ..+- -..++.... .+.....-.|.... ..+|.++.
T Consensus 157 ~~~G~~--~~A~~~~~~al~~~P~~~~~~--------~~l~-~~li~~~~~---~~~~~~l~~~~~~~----~~~~~~~~ 218 (280)
T PF13429_consen 157 EQLGDP--DKALRDYRKALELDPDDPDAR--------NALA-WLLIDMGDY---DEAREALKRLLKAA----PDDPDLWD 218 (280)
T ss_dssp HHCCHH--HHHHHHHHHHHHH-TT-HHHH--------HHHH-HHHCTTCHH---HHHHHHHHHHHHH-----HTSCCHCH
T ss_pred HHcCCH--HHHHHHHHHHHHcCCCCHHHH--------HHHH-HHHHHCCCh---HHHHHHHHHHHHHC----cCHHHHHH
Confidence 655522 345555666666655432111 0000 001111111 11122223455443 36778999
Q ss_pred HHHHHHHhcCCCcChHhhhhhhhc
Q 024660 165 MLAEYLYSESPELDMARVSFHFVR 188 (264)
Q Consensus 165 ~la~~~~~e~~~~~~~~A~~Hfl~ 188 (264)
.+|..|..-| ++.+|..+|-.
T Consensus 219 ~la~~~~~lg---~~~~Al~~~~~ 239 (280)
T PF13429_consen 219 ALAAAYLQLG---RYEEALEYLEK 239 (280)
T ss_dssp HHHHHHHHHT----HHHHHHHHHH
T ss_pred HHHHHhcccc---ccccccccccc
Confidence 9999999999 88888888764
No 32
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=76.94 E-value=63 Score=29.93 Aligned_cols=64 Identities=23% Similarity=0.364 Sum_probs=41.0
Q ss_pred chHHHHHHHHHHhccCChhHHHHHHHHHHHHH-HhhhCHHHHHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhhCC
Q 024660 13 PAQENIDKLEKIVNEGNFYGAQQMYKSISARY-VAAQRYSEALDLLHAGACLQLKNNQLTCGAELAVSFVEALVKGK 88 (264)
Q Consensus 13 ~~~r~l~rl~~~i~~G~~YEAhQ~~RTl~~Ry-~~~kk~~eAieLL~~GA~~ll~~~Q~~sa~DL~~llvevl~~~~ 88 (264)
.-++++..+++.+.++.- +-...++.+.... ...+++++|+++|..| ..-|+..+.|++|-.-+
T Consensus 81 ~~e~~l~~l~~~~~~~~~-~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----------~~lE~~al~Vqi~L~~~ 145 (290)
T PF04733_consen 81 DKESALEELKELLADQAG-ESNEIVQLLAATILFHEGDYEEALKLLHKG-----------GSLELLALAVQILLKMN 145 (290)
T ss_dssp THHCHHHHHHHCCCTS----CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----------TCHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHhccc-cccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----------CcccHHHHHHHHHHHcC
Confidence 356788888888876532 1123444544443 5579999999999754 12477777888887653
No 33
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=75.83 E-value=76 Score=30.33 Aligned_cols=82 Identities=20% Similarity=0.209 Sum_probs=55.5
Q ss_pred CCCHHHHHHHHHHHHhcCCCcChHhhhhhhh------------------cCCChHHHHHHHHHHHhhcCCCchHHHHHHH
Q 024660 157 TGSPELHVMLAEYLYSESPELDMARVSFHFV------------------RGNNPEKFASTIVNFMGKCYPGEDDLAVARA 218 (264)
Q Consensus 157 ~Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl------------------~~~d~~~~a~~L~ew~~~~~~~e~dlfiaRa 218 (264)
..+|++|..+|..+...| +..+|...+. ..+++..--..+-.|.++ .|...++.++.+
T Consensus 260 ~~~~~~~~~~A~~l~~~g---~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~-~P~~~~l~l~lg 335 (398)
T PRK10747 260 RHQVALQVAMAEHLIECD---DHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLRQQIKQ-HGDTPLLWSTLG 335 (398)
T ss_pred hCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHHHHHhh-CCCCHHHHHHHH
Confidence 478999999999999988 6655544432 223444444555556544 467777777777
Q ss_pred HHHHHhcCChhHHHHHHHHHHHHhh
Q 024660 219 ILMYLSLGNMKDANYIMDEVKKQVE 243 (264)
Q Consensus 219 VL~~L~l~n~~~A~~~~~~f~~~~~ 243 (264)
-+. +..++...|...|+.-++..|
T Consensus 336 rl~-~~~~~~~~A~~~le~al~~~P 359 (398)
T PRK10747 336 QLL-MKHGEWQEASLAFRAALKQRP 359 (398)
T ss_pred HHH-HHCCCHHHHHHHHHHHHhcCC
Confidence 654 567788999988888776544
No 34
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=75.70 E-value=95 Score=31.43 Aligned_cols=157 Identities=16% Similarity=0.129 Sum_probs=91.6
Q ss_pred ChhHHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHc-CCcc-cH----HHHHHHHHHHHhhCCCCCChhHHHHHHHH
Q 024660 29 NFYGAQQMYKSISARYVAAQRYSEALDLLHAGACLQLKN-NQLT-CG----AELAVSFVEALVKGKVAYDNENLDRVRKI 102 (264)
Q Consensus 29 ~~YEAhQ~~RTl~~Ry~~~kk~~eAieLL~~GA~~ll~~-~Q~~-sa----~DL~~llvevl~~~~~~~~~~~~~rl~~l 102 (264)
+.=|.+-.+--++..+...++|++|+.++..+-.++++. ||.. +- ++|+.++ +......=.++.....+++
T Consensus 320 ~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~---~~~gk~~ea~~~~k~ai~~ 396 (508)
T KOG1840|consen 320 SHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELY---LKMGKYKEAEELYKKAIQI 396 (508)
T ss_pred ChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHH---HHhcchhHHHHHHHHHHHH
Confidence 344455566678888899999999999998777666643 5554 22 3444333 2233233334455666666
Q ss_pred HHhCCCCCCCCCCCCCchHHHHHHHHhhhhhhhhhhhHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHhcCCCcChHhh
Q 024660 103 YELFPQIPVPHNLEDDDDLHELTEALGAAKLRVEGCSSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDMARV 182 (264)
Q Consensus 103 ~~~~p~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~~~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~~~~~e~~~~~~~~A 182 (264)
.+....... -+.-..+.++-++.. ...+.++-..+...|+.|.+..|.+.-|--..-.-||..|-.-| +|++|
T Consensus 397 ~~~~~~~~~---~~~~~~l~~la~~~~-~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g---~~e~a 469 (508)
T KOG1840|consen 397 LRELLGKKD---YGVGKPLNQLAEAYE-ELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQG---NYEAA 469 (508)
T ss_pred HHhcccCcC---hhhhHHHHHHHHHHH-HhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcc---cHHHH
Confidence 654432111 011234445544432 22222223677889999996666533344455667888888888 88776
Q ss_pred hhhhhcCCChHHHHHHHHHHHhh
Q 024660 183 SFHFVRGNNPEKFASTIVNFMGK 205 (264)
Q Consensus 183 ~~Hfl~~~d~~~~a~~L~ew~~~ 205 (264)
. ++.+.+..|-.+
T Consensus 470 ~----------~~~~~~~~~~~~ 482 (508)
T KOG1840|consen 470 E----------ELEEKVLNAREQ 482 (508)
T ss_pred H----------HHHHHHHHHHHH
Confidence 4 566777777553
No 35
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=74.92 E-value=1.4e+02 Score=32.90 Aligned_cols=42 Identities=21% Similarity=0.204 Sum_probs=28.7
Q ss_pred HHHHHHhccCChhHHHHHHHHHHHH--------------HHhhhCHHHHHHHHHHH
Q 024660 19 DKLEKIVNEGNFYGAQQMYKSISAR--------------YVAAQRYSEALDLLHAG 60 (264)
Q Consensus 19 ~rl~~~i~~G~~YEAhQ~~RTl~~R--------------y~~~kk~~eAieLL~~G 60 (264)
..-+...+.|+|=||.+.|+..... |...|++++|+..+...
T Consensus 466 ~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~a 521 (1157)
T PRK11447 466 QQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRL 521 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444556778888888777765432 67778888888776653
No 36
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=73.37 E-value=35 Score=25.30 Aligned_cols=26 Identities=15% Similarity=0.175 Sum_probs=21.3
Q ss_pred CHHHHHHHHHHHHhcCCCcChHhhhhhhh
Q 024660 159 SPELHVMLAEYLYSESPELDMARVSFHFV 187 (264)
Q Consensus 159 dp~LH~~la~~~~~e~~~~~~~~A~~Hfl 187 (264)
.|..+..+|.++.+.+ ++.+|..++-
T Consensus 75 ~~~~~~~~~~~~~~~~---~~~~A~~~~~ 100 (119)
T TIGR02795 75 APDALLKLGMSLQELG---DKEKAKATLQ 100 (119)
T ss_pred ccHHHHHHHHHHHHhC---ChHHHHHHHH
Confidence 4778899999999988 8888887764
No 37
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=73.23 E-value=30 Score=26.84 Aligned_cols=68 Identities=13% Similarity=0.021 Sum_probs=49.8
Q ss_pred CCHHHHHHHHHHHHhcCCCcChHhhhhhhhcCCChHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhcCChhHHHHHHHH
Q 024660 158 GSPELHVMLAEYLYSESPELDMARVSFHFVRGNNPEKFASTIVNFMGKCYPGEDDLAVARAILMYLSLGNMKDANYIMDE 237 (264)
Q Consensus 158 Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~~~d~~~~a~~L~ew~~~~~~~e~dlfiaRaVL~~L~l~n~~~A~~~~~~ 237 (264)
.+|..+..+|..+.+.+ ++.+|...|-. ..+..|...+.+..+++ .|.-.++...|...++.
T Consensus 49 ~~~~~~~~la~~~~~~~---~~~~A~~~~~~--------------~~~~~p~~~~~~~~la~-~~~~~g~~~~A~~~~~~ 110 (135)
T TIGR02552 49 YNSRYWLGLAACCQMLK---EYEEAIDAYAL--------------AAALDPDDPRPYFHAAE-CLLALGEPESALKALDL 110 (135)
T ss_pred CcHHHHHHHHHHHHHHH---HHHHHHHHHHH--------------HHhcCCCChHHHHHHHH-HHHHcCCHHHHHHHHHH
Confidence 57899999999999888 88777765422 11223566777777777 55678999999999888
Q ss_pred HHHHhh
Q 024660 238 VKKQVE 243 (264)
Q Consensus 238 f~~~~~ 243 (264)
..+..|
T Consensus 111 al~~~p 116 (135)
T TIGR02552 111 AIEICG 116 (135)
T ss_pred HHHhcc
Confidence 777544
No 38
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=73.04 E-value=24 Score=23.39 Aligned_cols=27 Identities=7% Similarity=0.010 Sum_probs=21.9
Q ss_pred CHHHHHHHHHHHHhcCCCcChHhhhhhhhc
Q 024660 159 SPELHVMLAEYLYSESPELDMARVSFHFVR 188 (264)
Q Consensus 159 dp~LH~~la~~~~~e~~~~~~~~A~~Hfl~ 188 (264)
++..+..+|.++...+ ++..|..+|..
T Consensus 67 ~~~~~~~~~~~~~~~~---~~~~a~~~~~~ 93 (100)
T cd00189 67 NAKAYYNLGLAYYKLG---KYEEALEAYEK 93 (100)
T ss_pred chhHHHHHHHHHHHHH---hHHHHHHHHHH
Confidence 4478888999999888 88888887754
No 39
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.59 E-value=85 Score=29.41 Aligned_cols=183 Identities=19% Similarity=0.179 Sum_probs=106.8
Q ss_pred hHHHHHHHHHHhc--cCChhHHHHHHHHHHHHHHhhhCHHHHHHHHHHH-------------------HHHHHHc-CCcc
Q 024660 14 AQENIDKLEKIVN--EGNFYGAQQMYKSISARYVAAQRYSEALDLLHAG-------------------ACLQLKN-NQLT 71 (264)
Q Consensus 14 ~~r~l~rl~~~i~--~G~~YEAhQ~~RTl~~Ry~~~kk~~eAieLL~~G-------------------A~~ll~~-~Q~~ 71 (264)
++.-.+++..-.. .-|||-|--+|=--..=|..+++|+.|.+-|... |-.|++. ..+.
T Consensus 9 i~ea~e~~a~t~~~wkad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~kls 88 (308)
T KOG1585|consen 9 ISEADEMTALTLTRWKADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLS 88 (308)
T ss_pred HHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhH
Confidence 3344444444444 6799999999999999999999999888766443 4445554 6677
Q ss_pred cHHHHHHHHHHHHhhCCCCCCh-hHHHHHHHHHHhCCCCCCCCCCCCCchHHHHHHHHhhhhhhhhhhhHHHHHHHHhhh
Q 024660 72 CGAELAVSFVEALVKGKVAYDN-ENLDRVRKIYELFPQIPVPHNLEDDDDLHELTEALGAAKLRVEGCSSFLKAAIKWSI 150 (264)
Q Consensus 72 sa~DL~~llvevl~~~~~~~~~-~~~~rl~~l~~~~p~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~~~~fl~~ai~WS~ 150 (264)
.+.||..--.+.|.+.|.|-+. ..+++-.++++-..|.. - ..|-.++..--.
T Consensus 89 Evvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~---------A------------------lqlYqralavve 141 (308)
T KOG1585|consen 89 EVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDD---------A------------------LQLYQRALAVVE 141 (308)
T ss_pred HHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHH---------H------------------HHHHHHHHHHHh
Confidence 8888888888888888877664 36677777766443221 0 333344433322
Q ss_pred hcCCCCCCCHHHHHHHHHHHHhcCCCcChHhhhhhhhcCCChHHHHHHHHHHHhhc--CCCchHHHHHHHHHHHHhcCCh
Q 024660 151 EFGAPKTGSPELHVMLAEYLYSESPELDMARVSFHFVRGNNPEKFASTIVNFMGKC--YPGEDDLAVARAILMYLSLGNM 228 (264)
Q Consensus 151 ~~g~~~~Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~~~d~~~~a~~L~ew~~~~--~~~e~dlfiaRaVL~~L~l~n~ 228 (264)
.. +.-.=.-+|-...+++|.+-. .|.+|-.-|+. ...|..++ +++---.||+ +||-||...+.
T Consensus 142 ~~-dr~~ma~el~gk~sr~lVrl~---kf~Eaa~a~lK----------e~~~~~~~~~y~~~~k~~va-~ilv~L~~~Dy 206 (308)
T KOG1585|consen 142 ED-DRDQMAFELYGKCSRVLVRLE---KFTEAATAFLK----------EGVAADKCDAYNSQCKAYVA-AILVYLYAHDY 206 (308)
T ss_pred cc-chHHHHHHHHHHhhhHhhhhH---HhhHHHHHHHH----------hhhHHHHHhhcccHHHHHHH-HHHHHhhHHHH
Confidence 21 111122234444555555544 44444333322 23344332 3333344554 56777877777
Q ss_pred hHHHHHHHHH
Q 024660 229 KDANYIMDEV 238 (264)
Q Consensus 229 ~~A~~~~~~f 238 (264)
..|..++...
T Consensus 207 v~aekc~r~~ 216 (308)
T KOG1585|consen 207 VQAEKCYRDC 216 (308)
T ss_pred HHHHHHhcch
Confidence 7777776653
No 40
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=70.49 E-value=31 Score=23.48 Aligned_cols=61 Identities=18% Similarity=0.156 Sum_probs=42.2
Q ss_pred HHHHHHHhcCCCcChHhhhhhhhcCCChHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhh
Q 024660 165 MLAEYLYSESPELDMARVSFHFVRGNNPEKFASTIVNFMGKCYPGEDDLAVARAILMYLSLGNMKDANYIMDEVKKQVE 243 (264)
Q Consensus 165 ~la~~~~~e~~~~~~~~A~~Hfl~~~d~~~~a~~L~ew~~~~~~~e~dlfiaRaVL~~L~l~n~~~A~~~~~~f~~~~~ 243 (264)
..|..+++.| ++.+|+.+|- ...+.+|...+.....+.+.+ ..|+...|...++..++.-|
T Consensus 2 ~~a~~~~~~g---~~~~A~~~~~--------------~~l~~~P~~~~a~~~lg~~~~-~~g~~~~A~~~~~~a~~~~P 62 (65)
T PF13432_consen 2 ALARALYQQG---DYDEAIAAFE--------------QALKQDPDNPEAWYLLGRILY-QQGRYDEALAYYERALELDP 62 (65)
T ss_dssp HHHHHHHHCT---HHHHHHHHHH--------------HHHCCSTTHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHST
T ss_pred hHHHHHHHcC---CHHHHHHHHH--------------HHHHHCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCc
Confidence 3577788888 7877776653 222334666677777776654 88999999999999887544
No 41
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=70.18 E-value=6.3 Score=27.14 Aligned_cols=50 Identities=18% Similarity=0.134 Sum_probs=36.1
Q ss_pred hccCChhHHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHcCCcccHHHHHHHH
Q 024660 25 VNEGNFYGAQQMYKSISARYVAAQRYSEALDLLHAGACLQLKNNQLTCGAELAVSF 80 (264)
Q Consensus 25 i~~G~~YEAhQ~~RTl~~Ry~~~kk~~eAieLL~~GA~~ll~~~Q~~sa~DL~~ll 80 (264)
++.|+|=+|.+.|+.+..+.-. -.++.+.=|..+++.|++..|.++..-+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~------~~~~~~~la~~~~~~g~~~~A~~~l~~~ 51 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPD------NPEARLLLAQCYLKQGQYDEAEELLERL 51 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTT------SHHHHHHHHHHHHHTT-HHHHHHHHHCC
T ss_pred hhccCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5788999999999998877532 4455566677888888888887775433
No 42
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=69.29 E-value=86 Score=28.13 Aligned_cols=72 Identities=15% Similarity=0.158 Sum_probs=53.5
Q ss_pred chHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhhC
Q 024660 13 PAQENIDKLEKIVNEGNFYGAQQMYKSISARYVAAQRYSEALDLLHAGACLQLKNNQLTCGAELAVSFVEALVKG 87 (264)
Q Consensus 13 ~~~r~l~rl~~~i~~G~~YEAhQ~~RTl~~Ry~~~kk~~eAieLL~~GA~~ll~~~Q~~sa~DL~~llvevl~~~ 87 (264)
..+..-.+-...+++|+|-+|-..|+.+..+|-.. ..+....+.=+....+.+++..|....--+++.+-.+
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s---~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~ 102 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFG---PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTH 102 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCC
Confidence 35556677888899999999999999999998655 2343445555667778888888877777776666555
No 43
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=68.12 E-value=64 Score=26.18 Aligned_cols=77 Identities=18% Similarity=0.216 Sum_probs=46.9
Q ss_pred hHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHhcCCCcChHhhhhhhhcCCChHHHHHHHHHHHhhcCCCchHHHHHHH
Q 024660 139 SSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDMARVSFHFVRGNNPEKFASTIVNFMGKCYPGEDDLAVARA 218 (264)
Q Consensus 139 ~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~~~d~~~~a~~L~ew~~~~~~~e~dlfiaRa 218 (264)
..+++++++.. .+++..+..+|.++...+ ++.+|..++-..-+ . .|...+.+...+
T Consensus 155 ~~~~~~~~~~~-------~~~~~~~~~la~~~~~~~---~~~~A~~~~~~~~~-------------~-~~~~~~~~~~~~ 210 (234)
T TIGR02521 155 EKYLTRALQID-------PQRPESLLELAELYYLRG---QYKDARAYLERYQQ-------------T-YNQTAESLWLGI 210 (234)
T ss_pred HHHHHHHHHhC-------cCChHHHHHHHHHHHHcC---CHHHHHHHHHHHHH-------------h-CCCCHHHHHHHH
Confidence 45555555542 246778889999999999 88888776532111 1 233444444333
Q ss_pred HHHHHhcCChhHHHHHHHHHHH
Q 024660 219 ILMYLSLGNMKDANYIMDEVKK 240 (264)
Q Consensus 219 VL~~L~l~n~~~A~~~~~~f~~ 240 (264)
..+...++...|....+....
T Consensus 211 -~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 211 -RIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred -HHHHHHhhHHHHHHHHHHHHh
Confidence 334567888888877665543
No 44
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=67.93 E-value=78 Score=27.12 Aligned_cols=70 Identities=17% Similarity=0.229 Sum_probs=48.5
Q ss_pred chHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHh
Q 024660 13 PAQENIDKLEKIVNEGNFYGAQQMYKSISARYVAAQRYSEALDLLHAGACLQLKNNQLTCGAELAVSFVEALV 85 (264)
Q Consensus 13 ~~~r~l~rl~~~i~~G~~YEAhQ~~RTl~~Ry~~~kk~~eAieLL~~GA~~ll~~~Q~~sa~DL~~llvevl~ 85 (264)
..+....+-...+..|+|=+|.+.++.+...+-... ...+..+.-+..+.+.|++..|.+...-+++...
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p 101 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSP---YAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHP 101 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCch---hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc
Confidence 466677777788899999999999888876553222 2233445556777788888888877766665443
No 45
>COG1516 FliS Flagellin-specific chaperone FliS [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones]
Probab=67.10 E-value=11 Score=31.53 Aligned_cols=60 Identities=25% Similarity=0.278 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhhCCCCCChhHHHHHHHHHHhCC
Q 024660 33 AQQMYKSISARYVAAQRYSEALDLLHAGACLQLKNNQLTCGAELAVSFVEALVKGKVAYDNENLDRVRKIYELFP 107 (264)
Q Consensus 33 AhQ~~RTl~~Ry~~~kk~~eAieLL~~GA~~ll~~~Q~~sa~DL~~llvevl~~~~~~~~~~~~~rl~~l~~~~p 107 (264)
|.|.|+.. -+......+-+.+||+|+..+++... ..++..+++...+.++|...||..+.
T Consensus 6 ~~~aY~qn---~V~taSP~~Li~MLyeg~l~~l~~A~------------~aie~~~i~~k~~~i~ka~~Ii~eL~ 65 (132)
T COG1516 6 AYQAYQQN---QVNTASPHKLILMLYEGALKFLKRAK------------EAIEQEDIEEKNESIDKAIDIITELR 65 (132)
T ss_pred HHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHHHHH------------HHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 55667766 78888999999999999999887432 23566666666677777777777553
No 46
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=66.84 E-value=57 Score=25.17 Aligned_cols=28 Identities=14% Similarity=0.012 Sum_probs=24.4
Q ss_pred CCHHHHHHHHHHHHhcCCCcChHhhhhhhhc
Q 024660 158 GSPELHVMLAEYLYSESPELDMARVSFHFVR 188 (264)
Q Consensus 158 Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~ 188 (264)
-+|..|..+|.+|+..| ++.+|..+|-.
T Consensus 83 ~~~~~~~~la~~~~~~g---~~~~A~~~~~~ 110 (135)
T TIGR02552 83 DDPRPYFHAAECLLALG---EPESALKALDL 110 (135)
T ss_pred CChHHHHHHHHHHHHcC---CHHHHHHHHHH
Confidence 47889999999999999 99999887753
No 47
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=66.17 E-value=54 Score=32.83 Aligned_cols=117 Identities=14% Similarity=0.209 Sum_probs=70.4
Q ss_pred HHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHcCCc------------ccHHHHHHHHHHHHhhCCCCCChh---HHHHHH
Q 024660 36 MYKSISARYVAAQRYSEALDLLHAGACLQLKNNQL------------TCGAELAVSFVEALVKGKVAYDNE---NLDRVR 100 (264)
Q Consensus 36 ~~RTl~~Ry~~~kk~~eAieLL~~GA~~ll~~~Q~------------~sa~DL~~llvevl~~~~~~~~~~---~~~rl~ 100 (264)
.||.++.-|.++|++.||.-+.-.....|=..-|. .++-+=+ ..+-+.+....+. .+..+.
T Consensus 370 ~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKA----Kkf~ek~L~~~P~Y~~AV~~~A 445 (564)
T KOG1174|consen 370 IYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKA----KKFAEKSLKINPIYTPAVNLIA 445 (564)
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHH----HHHHHhhhccCCccHHHHHHHH
Confidence 47899999999999999988776665554332221 1111111 1222333444433 333444
Q ss_pred HHHHhCCCCCCCCCCCCCchHHHHHHHHhhhhhhhhhhhHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHhcCCCcChH
Q 024660 101 KIYELFPQIPVPHNLEDDDDLHELTEALGAAKLRVEGCSSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDMA 180 (264)
Q Consensus 101 ~l~~~~p~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~~~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~~~~~e~~~~~~~ 180 (264)
+|... +.+.. |+ .+++.++++ -+-|.-||..+|.++..-. ++.
T Consensus 446 EL~~~---Eg~~~------D~-----------------i~LLe~~L~--------~~~D~~LH~~Lgd~~~A~N---e~Q 488 (564)
T KOG1174|consen 446 ELCQV---EGPTK------DI-----------------IKLLEKHLI--------IFPDVNLHNHLGDIMRAQN---EPQ 488 (564)
T ss_pred HHHHh---hCccc------hH-----------------HHHHHHHHh--------hccccHHHHHHHHHHHHhh---hHH
Confidence 44432 22111 11 566666654 2567789999999999888 899
Q ss_pred hhhhhhh--cCCChH
Q 024660 181 RVSFHFV--RGNNPE 193 (264)
Q Consensus 181 ~A~~Hfl--~~~d~~ 193 (264)
+|..||- +.-||+
T Consensus 489 ~am~~y~~ALr~dP~ 503 (564)
T KOG1174|consen 489 KAMEYYYKALRQDPK 503 (564)
T ss_pred HHHHHHHHHHhcCcc
Confidence 9999986 466765
No 48
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=66.10 E-value=9.8 Score=22.63 Aligned_cols=26 Identities=15% Similarity=0.029 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHhcCCCcChHhhhhhhhcC
Q 024660 161 ELHVMLAEYLYSESPELDMARVSFHFVRG 189 (264)
Q Consensus 161 ~LH~~la~~~~~e~~~~~~~~A~~Hfl~~ 189 (264)
+.+..+|.+|...+ ++.+|..+|-.+
T Consensus 2 ~~~~~lg~~y~~~~---~~~~A~~~~~~a 27 (34)
T PF13181_consen 2 EAYYNLGKIYEQLG---DYEEALEYFEKA 27 (34)
T ss_dssp HHHHHHHHHHHHTT---SHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC---CHHHHHHHHHHH
Confidence 57889999999999 999999998543
No 49
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=66.09 E-value=46 Score=28.01 Aligned_cols=93 Identities=14% Similarity=0.239 Sum_probs=60.4
Q ss_pred hHHHHHHHHHHhccCChhHHHHHHHHHHHHH-----------------HhhhCHHHHHHHHHHHHHHHHHcCCcccHHHH
Q 024660 14 AQENIDKLEKIVNEGNFYGAQQMYKSISARY-----------------VAAQRYSEALDLLHAGACLQLKNNQLTCGAEL 76 (264)
Q Consensus 14 ~~r~l~rl~~~i~~G~~YEAhQ~~RTl~~Ry-----------------~~~kk~~eAieLL~~GA~~ll~~~Q~~sa~DL 76 (264)
.+..-+.=+..+++|+|=+|-..+..|-+|| .++++|.+|+.-+. .|++..=..--+|-
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~----rFirLhP~hp~vdY 85 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYD----RFIRLHPTHPNVDY 85 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHH----HHHHhCCCCCCccH
Confidence 4555666778888888888888888888887 56677777777665 45554333334566
Q ss_pred HHHHHH--HHhhC--------CCCCCh----hHHHHHHHHHHhCCCCC
Q 024660 77 AVSFVE--ALVKG--------KVAYDN----ENLDRVRKIYELFPQIP 110 (264)
Q Consensus 77 ~~llve--vl~~~--------~~~~~~----~~~~rl~~l~~~~p~~~ 110 (264)
+.|+.- -+... .+.-|. ..+.-+.+++..+|.+.
T Consensus 86 a~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 86 AYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCCh
Confidence 666653 22222 233332 46677888888888654
No 50
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=64.79 E-value=92 Score=26.80 Aligned_cols=70 Identities=13% Similarity=0.159 Sum_probs=42.8
Q ss_pred HHHHHHHHHHhccCChhHHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhhC
Q 024660 15 QENIDKLEKIVNEGNFYGAQQMYKSISARYVAAQRYSEALDLLHAGACLQLKNNQLTCGAELAVSFVEALVKG 87 (264)
Q Consensus 15 ~r~l~rl~~~i~~G~~YEAhQ~~RTl~~Ry~~~kk~~eAieLL~~GA~~ll~~~Q~~sa~DL~~llvevl~~~ 87 (264)
+..-+.-...++.|+|-+|-+.+..+..||-...--.+|. +.=+....+.|++..|.....-+++-+-.+
T Consensus 6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~---l~la~a~y~~~~y~~A~~~~~~fi~~yP~~ 75 (203)
T PF13525_consen 6 EALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQ---LMLAYAYYKQGDYEEAIAAYERFIKLYPNS 75 (203)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHH---HHHHHHHHHTT-HHHHHHHHHHHHHH-TT-
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHH---HHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Confidence 3445566788999999999999999999986655444332 333445556666666666555555544443
No 51
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=64.45 E-value=1.7e+02 Score=29.71 Aligned_cols=212 Identities=18% Similarity=0.218 Sum_probs=127.1
Q ss_pred CCchHHHHHHHHHH-hccCChhHHHHHHHHHHHH----------------------HHhhhCHHHHHHHHHHHHHHHHHc
Q 024660 11 LPPAQENIDKLEKI-VNEGNFYGAQQMYKSISAR----------------------YVAAQRYSEALDLLHAGACLQLKN 67 (264)
Q Consensus 11 ~~~~~r~l~rl~~~-i~~G~~YEAhQ~~RTl~~R----------------------y~~~kk~~eAieLL~~GA~~ll~~ 67 (264)
.|.+.+|+..|-.. ...|+|=+|+|.++.-..+ |+.++||.+|+.+....-.++-+.
T Consensus 195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~ 274 (508)
T KOG1840|consen 195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV 274 (508)
T ss_pred CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 34455555555443 5678888888887766655 577899999999766555444432
Q ss_pred -CCc--ccHH---HHHHHHHHHHhhCCCCCChhHHHHHHHHHHhCCCCCCCCCCCCCchHHH-HHHH--Hhhhhhhhhhh
Q 024660 68 -NQL--TCGA---ELAVSFVEALVKGKVAYDNENLDRVRKIYELFPQIPVPHNLEDDDDLHE-LTEA--LGAAKLRVEGC 138 (264)
Q Consensus 68 -~Q~--~sa~---DL~~llvevl~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~l~~~~~~~~-~~~~--~~~~~~~~~~~ 138 (264)
|.. ..|+ +|+.++ +...+++-.++..++.++|....+-..++ ++.. +++- +..-++..+.-
T Consensus 275 ~G~~h~~va~~l~nLa~ly---~~~GKf~EA~~~~e~Al~I~~~~~~~~~~-------~v~~~l~~~~~~~~~~~~~Eea 344 (508)
T KOG1840|consen 275 FGEDHPAVAATLNNLAVLY---YKQGKFAEAEEYCERALEIYEKLLGASHP-------EVAAQLSELAAILQSMNEYEEA 344 (508)
T ss_pred cCCCCHHHHHHHHHHHHHH---hccCChHHHHHHHHHHHHHHHHhhccChH-------HHHHHHHHHHHHHHHhcchhHH
Confidence 332 2222 333333 55555666667888888888874433322 2222 2222 22234555556
Q ss_pred hHHHHHHHHhhhhcCCCCC-CCHHHHHHHHHHHHhcCCCcChHhhhhhhhcCCChHHHHHHHHHHHhhcCCCchHHHHHH
Q 024660 139 SSFLKAAIKWSIEFGAPKT-GSPELHVMLAEYLYSESPELDMARVSFHFVRGNNPEKFASTIVNFMGKCYPGEDDLAVAR 217 (264)
Q Consensus 139 ~~fl~~ai~WS~~~g~~~~-Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~~~d~~~~a~~L~ew~~~~~~~e~dlfiaR 217 (264)
.++..++++==.+..+... =-+..---+|..|.+-| .|.+|+.-|- ....+.-+. ......+.+.+|-+
T Consensus 345 ~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~g---k~~ea~~~~k------~ai~~~~~~-~~~~~~~~~~~l~~ 414 (508)
T KOG1840|consen 345 KKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMG---KYKEAEELYK------KAIQILREL-LGKKDYGVGKPLNQ 414 (508)
T ss_pred HHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhc---chhHHHHHHH------HHHHHHHhc-ccCcChhhhHHHHH
Confidence 7777777776664321111 23455567888888888 8888775542 222222211 11123466778888
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHHh
Q 024660 218 AILMYLSLGNMKDANYIMDEVKKQV 242 (264)
Q Consensus 218 aVL~~L~l~n~~~A~~~~~~f~~~~ 242 (264)
.-.-|.-.++...|..+|.......
T Consensus 415 la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 415 LAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred HHHHHHHhcccchHHHHHHHHHHHH
Confidence 8888888889999999999888655
No 52
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=64.41 E-value=2.1e+02 Score=31.37 Aligned_cols=29 Identities=24% Similarity=0.017 Sum_probs=25.6
Q ss_pred CCHHHHHHHHHHHHhcCCCcChHhhhhhhhcC
Q 024660 158 GSPELHVMLAEYLYSESPELDMARVSFHFVRG 189 (264)
Q Consensus 158 Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~~ 189 (264)
++|++|..+|.++...| ++.+|+.+|-..
T Consensus 675 ~~~~a~~nLA~al~~lG---d~~eA~~~l~~A 703 (987)
T PRK09782 675 DDPALIRQLAYVNQRLD---DMAATQHYARLV 703 (987)
T ss_pred CCHHHHHHHHHHHHHCC---CHHHHHHHHHHH
Confidence 78999999999999999 999999888653
No 53
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=62.95 E-value=12 Score=37.72 Aligned_cols=140 Identities=15% Similarity=0.205 Sum_probs=65.8
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHHH-HHhh---------hCH-----------HHHHHHHHHHHHHHHHcCC-cccHHH
Q 024660 18 IDKLEKIVNEGNFYGAQQMYKSISAR-YVAA---------QRY-----------SEALDLLHAGACLQLKNNQ-LTCGAE 75 (264)
Q Consensus 18 l~rl~~~i~~G~~YEAhQ~~RTl~~R-y~~~---------kk~-----------~eAieLL~~GA~~ll~~~Q-~~sa~D 75 (264)
++.+-..|=+||.+.+.+..+++..= .+++ |.. .-.-.+|.+.|..|+.+.. +..|.+
T Consensus 301 ~e~~~~~i~~~d~~~vL~~~~~~~~~~w~aahladLl~~~g~L~~~~~~~~~~~~lre~~ll~YA~~L~s~~~lW~vai~ 380 (566)
T PF07575_consen 301 LEQILLAIFEGDIESVLKEISSLFDDWWFAAHLADLLEHKGLLEDSEQEDFGGSSLREYLLLEYASSLMSHHSLWQVAIG 380 (566)
T ss_dssp THHHHHHHHTS--GGGHHHHHHH--HHHHHHHHHHHHHHTTSS--SS-----TS-HHHHHHHHHHHHHHT-TTTHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHccchhHHHHHHHHHHhcCccccccccccccccHHHHHHHHHHHHHhcCcchHHHHHH
Confidence 34444567789999999998877211 1110 100 0112234444444444322 222222
Q ss_pred HHHHHHHHHhhCCCCCChhHHHHHHHHHHhCCCCCCCCCCCCCchHHHHHHHHhhhhhhhhhhhHHHHHHHHhhhhcCCC
Q 024660 76 LAVSFVEALVKGKVAYDNENLDRVRKIYELFPQIPVPHNLEDDDDLHELTEALGAAKLRVEGCSSFLKAAIKWSIEFGAP 155 (264)
Q Consensus 76 L~~llvevl~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~~~~fl~~ai~WS~~~g~~ 155 (264)
. +. -|.++...+|..++..+|-.... . ..+.+.-|-+|.-.
T Consensus 381 y----L~-------~c~~~g~~~i~~lL~~~p~~t~~---------------------~---~~k~l~iC~~~~L~---- 421 (566)
T PF07575_consen 381 Y----LS-------SCPDEGRERIEELLPRVPLDTND---------------------D---AEKLLEICAELGLE---- 421 (566)
T ss_dssp H----HH-------S-SSS-HHHHHHHGGG----SHH---------------------H---HHHHHHHHHHHT-H----
T ss_pred H----HH-------HCChhhHHHHHHHHhhCCCCchH---------------------H---HHHHHHHHHHCCCH----
Confidence 2 21 23444578888888888754310 0 13444444444332
Q ss_pred CCCCHHHHHHHHHHHHhcCCCcChHhhhhhhhcCCChH---HHHHHHH
Q 024660 156 KTGSPELHVMLAEYLYSESPELDMARVSFHFVRGNNPE---KFASTIV 200 (264)
Q Consensus 156 ~~Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~~~d~~---~~a~~L~ 200 (264)
.=..++.+.+|..++++| +|..|..+|+.+.|.. ..++.++
T Consensus 422 -~~a~~I~~~~~~~~~~~~---~~g~AL~~~~ra~d~~~v~~i~~~ll 465 (566)
T PF07575_consen 422 -DVAREICKILGQRLLKEG---RYGEALSWFIRAGDYSLVTRIADRLL 465 (566)
T ss_dssp -HHHHHHHHHHHHHHHHHH---HHHHHHHHHH----------------
T ss_pred -HHHHHHHHHHHHHHHHCC---CHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 124579999999999999 9999999999999976 5555555
No 54
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=62.46 E-value=19 Score=27.62 Aligned_cols=55 Identities=18% Similarity=0.119 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhhCCCCCChhHHHHHHHHHHhCCCCCC
Q 024660 54 LDLLHAGACLQLKNNQLTCGAELAVSFVEALVKGKVAYDNENLDRVRKIYELFPQIPV 111 (264)
Q Consensus 54 ieLL~~GA~~ll~~~Q~~sa~DL~~llvevl~~~~~~~~~~~~~rl~~l~~~~p~~~~ 111 (264)
.+..|.-|..++..|++..|.|..+.+ +....-.=++.....+++||..+++.+|
T Consensus 22 ~~ar~~lA~~~~~~g~~e~Al~~Ll~~---v~~dr~~~~~~ar~~ll~~f~~lg~~~p 76 (90)
T PF14561_consen 22 LDARYALADALLAAGDYEEALDQLLEL---VRRDRDYEDDAARKRLLDIFELLGPGDP 76 (90)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHH---HCC-TTCCCCHHHHHHHHHHHHH-TT-H
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHH---HHhCccccccHHHHHHHHHHHHcCCCCh
Confidence 366777777888888888887776444 3333333356788999999999987653
No 55
>KOG3687 consensus Tuberin - Rap/ran-GTPase-activating protein [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=61.95 E-value=2.4e+02 Score=31.53 Aligned_cols=58 Identities=10% Similarity=0.195 Sum_probs=44.5
Q ss_pred ChhHHHHHHHHHHHHHHhhhCHH-HHHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhhC
Q 024660 29 NFYGAQQMYKSISARYVAAQRYS-EALDLLHAGACLQLKNNQLTCGAELAVSFVEALVKG 87 (264)
Q Consensus 29 ~~YEAhQ~~RTl~~Ry~~~kk~~-eAieLL~~GA~~ll~~~Q~~sa~DL~~llvevl~~~ 87 (264)
-+=.-|||+|.|+--... ++|+ .||+.|++-..-|..-+..+.+-+++.-+..-|...
T Consensus 40 P~~~R~rmi~~i~~~~k~-~~~~e~aI~~lw~~~~DlI~pN~~Ae~R~~vl~l~kR~v~T 98 (1697)
T KOG3687|consen 40 PLNNRIRMIGQICEVAKT-KKFEEHAIEALWKAVADLIQPNRTAEARHAVLALLKRIVQT 98 (1697)
T ss_pred cHHHHHHHHHHHHhhHhh-hcccHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHhh
Confidence 345568999999877666 6665 799999999999998888888888877666555443
No 56
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=61.37 E-value=8.8 Score=20.60 Aligned_cols=26 Identities=12% Similarity=0.013 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHhcCCCcChHhhhhhhhc
Q 024660 160 PELHVMLAEYLYSESPELDMARVSFHFVR 188 (264)
Q Consensus 160 p~LH~~la~~~~~e~~~~~~~~A~~Hfl~ 188 (264)
|..+..+|.+++..+ ++..|..+|-.
T Consensus 1 ~~~~~~~a~~~~~~~---~~~~a~~~~~~ 26 (34)
T smart00028 1 AEALYNLGNAYLKLG---DYDEALEYYEK 26 (34)
T ss_pred ChHHHHHHHHHHHHh---hHHHHHHHHHH
Confidence 356788999999999 99999888743
No 57
>PLN03077 Protein ECB2; Provisional
Probab=61.14 E-value=2.2e+02 Score=29.97 Aligned_cols=64 Identities=16% Similarity=0.096 Sum_probs=36.7
Q ss_pred HHHHHHHHHHhhhCHHHHHHHHHHH-----------HHHHHHcCCcccHHHHHHHHHHHHhhCCCCCChhHHHHHHHHH
Q 024660 36 MYKSISARYVAAQRYSEALDLLHAG-----------ACLQLKNNQLTCGAELAVSFVEALVKGKVAYDNENLDRVRKIY 103 (264)
Q Consensus 36 ~~RTl~~Ry~~~kk~~eAieLL~~G-----------A~~ll~~~Q~~sa~DL~~llvevl~~~~~~~~~~~~~rl~~l~ 103 (264)
+|-++..=|.+.|++++|..++..= ...+.++|++..|-++... +.+.++.+|...+..++..+
T Consensus 325 ~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~----M~~~g~~Pd~~t~~~ll~a~ 399 (857)
T PLN03077 325 VCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYAL----MEQDNVSPDEITIASVLSAC 399 (857)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHH----HHHhCCCCCceeHHHHHHHH
Confidence 4566777788888999888876531 2234445555444444332 24456666665555554433
No 58
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=60.91 E-value=13 Score=21.54 Aligned_cols=23 Identities=30% Similarity=0.483 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhhhCHHHHHHHHH
Q 024660 36 MYKSISARYVAAQRYSEALDLLH 58 (264)
Q Consensus 36 ~~RTl~~Ry~~~kk~~eAieLL~ 58 (264)
.|.++..-|.+.+++++|.+++.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~ 24 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFK 24 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHH
Confidence 46788888899999999888876
No 59
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=60.62 E-value=62 Score=27.97 Aligned_cols=82 Identities=16% Similarity=0.129 Sum_probs=53.8
Q ss_pred CCHHHHHHHHHHHHhcCCCcChHhhhhhhhc-----CCChH---HHHHHHH-HH--------------HhhcCCCchHHH
Q 024660 158 GSPELHVMLAEYLYSESPELDMARVSFHFVR-----GNNPE---KFASTIV-NF--------------MGKCYPGEDDLA 214 (264)
Q Consensus 158 Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~-----~~d~~---~~a~~L~-ew--------------~~~~~~~e~dlf 214 (264)
.+++.+..+|.+|...+ ++..|..+|-. .++++ .+|.+++ .- ..+..|.+.+.+
T Consensus 71 ~~~~~w~~Lg~~~~~~g---~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al 147 (198)
T PRK10370 71 QNSEQWALLGEYYLWRN---DYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTAL 147 (198)
T ss_pred CCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHH
Confidence 78899999999999999 99888777743 23344 3333321 10 002245666655
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHHhh
Q 024660 215 VARAILMYLSLGNMKDANYIMDEVKKQVE 243 (264)
Q Consensus 215 iaRaVL~~L~l~n~~~A~~~~~~f~~~~~ 243 (264)
...|+ .+.-.|+.+.|...++..++..+
T Consensus 148 ~~LA~-~~~~~g~~~~Ai~~~~~aL~l~~ 175 (198)
T PRK10370 148 MLLAS-DAFMQADYAQAIELWQKVLDLNS 175 (198)
T ss_pred HHHHH-HHHHcCCHHHHHHHHHHHHhhCC
Confidence 55554 34568899999988888776554
No 60
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=60.58 E-value=11 Score=24.40 Aligned_cols=25 Identities=12% Similarity=0.012 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHhcCCCcChHhhhhhhh
Q 024660 160 PELHVMLAEYLYSESPELDMARVSFHFV 187 (264)
Q Consensus 160 p~LH~~la~~~~~e~~~~~~~~A~~Hfl 187 (264)
|+.+..+|..|+..| ++.+|+..|=
T Consensus 1 p~~~~~la~~~~~~G---~~~~A~~~~~ 25 (44)
T PF13428_consen 1 PAAWLALARAYRRLG---QPDEAERLLR 25 (44)
T ss_pred CHHHHHHHHHHHHcC---CHHHHHHHHH
Confidence 678999999999999 9999988774
No 61
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=59.44 E-value=59 Score=30.15 Aligned_cols=89 Identities=11% Similarity=0.201 Sum_probs=69.1
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHHHH-----------------HhhhCHHHHHHHHHHHHHHHHHcCCcccHHHHHHHH
Q 024660 18 IDKLEKIVNEGNFYGAQQMYKSISARY-----------------VAAQRYSEALDLLHAGACLQLKNNQLTCGAELAVSF 80 (264)
Q Consensus 18 l~rl~~~i~~G~~YEAhQ~~RTl~~Ry-----------------~~~kk~~eAieLL~~GA~~ll~~~Q~~sa~DL~~ll 80 (264)
=+---..+.+|+|=+|-|-++..+.+| .++|+|++|..+.-.+++ .+.+..-+.|-.+-+
T Consensus 145 Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k---~~P~s~KApdallKl 221 (262)
T COG1729 145 YNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVK---DYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHH---hCCCCCCChHHHHHH
Confidence 333445688999999999999999998 567899999888877776 667777788887777
Q ss_pred HHHHhhCCCCCChhHHHHHHHHHHhCCCCCC
Q 024660 81 VEALVKGKVAYDNENLDRVRKIYELFPQIPV 111 (264)
Q Consensus 81 vevl~~~~~~~~~~~~~rl~~l~~~~p~~~~ 111 (264)
-.++...+ =+++...-+.++++.||.++.
T Consensus 222 g~~~~~l~--~~d~A~atl~qv~k~YP~t~a 250 (262)
T COG1729 222 GVSLGRLG--NTDEACATLQQVIKRYPGTDA 250 (262)
T ss_pred HHHHHHhc--CHHHHHHHHHHHHHHCCCCHH
Confidence 77666553 245677889999999997653
No 62
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=59.40 E-value=21 Score=24.77 Aligned_cols=38 Identities=18% Similarity=0.226 Sum_probs=31.5
Q ss_pred hHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHhcCCCcChHhhhhhh
Q 024660 139 SSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDMARVSFHF 186 (264)
Q Consensus 139 ~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~~~~~e~~~~~~~~A~~Hf 186 (264)
.+.+++++.+.- .+|.++...|.++++.| ++.+|...|
T Consensus 15 ~~~~~~~l~~~p-------~~~~~~~~~a~~~~~~g---~~~~A~~~l 52 (73)
T PF13371_consen 15 LEVLERALELDP-------DDPELWLQRARCLFQLG---RYEEALEDL 52 (73)
T ss_pred HHHHHHHHHhCc-------ccchhhHHHHHHHHHhc---cHHHHHHHH
Confidence 677788888742 48999999999999999 998887665
No 63
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=57.65 E-value=9.8 Score=27.33 Aligned_cols=25 Identities=16% Similarity=0.468 Sum_probs=18.7
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHH
Q 024660 18 IDKLEKIVNEGNFYGAQQMYKSISA 42 (264)
Q Consensus 18 l~rl~~~i~~G~~YEAhQ~~RTl~~ 42 (264)
+.......++|+|||||..+=-+-.
T Consensus 3 ~~~~~~l~n~g~f~EaHEvlE~~W~ 27 (62)
T PF03745_consen 3 LEEGIELFNAGDFFEAHEVLEELWK 27 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHCC
T ss_pred HHHHHHHHcCCCHHHhHHHHHHHHH
Confidence 3455677899999999998877665
No 64
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=57.43 E-value=3e+02 Score=30.34 Aligned_cols=28 Identities=21% Similarity=0.161 Sum_probs=24.9
Q ss_pred CCHHHHHHHHHHHHhcCCCcChHhhhhhhhc
Q 024660 158 GSPELHVMLAEYLYSESPELDMARVSFHFVR 188 (264)
Q Consensus 158 Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~ 188 (264)
+++++|..+|.+++..+ ++.+|..+|-.
T Consensus 179 ~~~~~~~~LA~ll~~~g---~~~eAl~~l~~ 206 (1157)
T PRK11447 179 GNTGLRNTLALLLFSSG---RRDEGFAVLEQ 206 (1157)
T ss_pred CCHHHHHHHHHHHHccC---CHHHHHHHHHH
Confidence 68899999999999999 99989888754
No 65
>PLN03077 Protein ECB2; Provisional
Probab=56.85 E-value=2.6e+02 Score=29.44 Aligned_cols=114 Identities=15% Similarity=0.058 Sum_probs=66.8
Q ss_pred HHHHHHHHHHhhhCHHHHHHHHHHH-----------HHHHHHcCCcccHHHHHHHHHHHHhhCCCCCChhHHHHHHHHHH
Q 024660 36 MYKSISARYVAAQRYSEALDLLHAG-----------ACLQLKNNQLTCGAELAVSFVEALVKGKVAYDNENLDRVRKIYE 104 (264)
Q Consensus 36 ~~RTl~~Ry~~~kk~~eAieLL~~G-----------A~~ll~~~Q~~sa~DL~~llvevl~~~~~~~~~~~~~rl~~l~~ 104 (264)
.|-++..-|.+.+++++|..++-.- ...+.+.|+...|-++...| .+.++.+|......++..+.
T Consensus 224 ~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M----~~~g~~Pd~~ty~~ll~a~~ 299 (857)
T PLN03077 224 VVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTM----RELSVDPDLMTITSVISACE 299 (857)
T ss_pred hHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHH----HHcCCCCChhHHHHHHHHHH
Confidence 4567777888888888888876421 12345667766666554433 45677777777776666555
Q ss_pred hCCCCCCCCCCCCCchHHHHHHHHhhhhhhhhhhhHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHhcCCCcChHhhhh
Q 024660 105 LFPQIPVPHNLEDDDDLHELTEALGAAKLRVEGCSSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDMARVSF 184 (264)
Q Consensus 105 ~~p~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~~~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~~~~~e~~~~~~~~A~~ 184 (264)
.....+ .-..+...++ +.| -..|+.....+...|.+.| ++.+|+.
T Consensus 300 ~~g~~~--------------------------~a~~l~~~~~----~~g--~~~d~~~~n~Li~~y~k~g---~~~~A~~ 344 (857)
T PLN03077 300 LLGDER--------------------------LGREMHGYVV----KTG--FAVDVSVCNSLIQMYLSLG---SWGEAEK 344 (857)
T ss_pred hcCChH--------------------------HHHHHHHHHH----HhC--CccchHHHHHHHHHHHhcC---CHHHHHH
Confidence 432110 0022222222 222 1346677777777888888 7777777
Q ss_pred hhhc
Q 024660 185 HFVR 188 (264)
Q Consensus 185 Hfl~ 188 (264)
-|-.
T Consensus 345 vf~~ 348 (857)
T PLN03077 345 VFSR 348 (857)
T ss_pred HHhh
Confidence 6643
No 66
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=55.51 E-value=15 Score=25.17 Aligned_cols=28 Identities=18% Similarity=0.312 Sum_probs=25.0
Q ss_pred CCHHHHHHHHHHHHhcCCCcChHhhhhhhhc
Q 024660 158 GSPELHVMLAEYLYSESPELDMARVSFHFVR 188 (264)
Q Consensus 158 Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~ 188 (264)
++++....+|.+|.+.| ++.+|+..|-.
T Consensus 23 ~~~~~~~~la~~~~~~g---~~~~A~~~l~~ 50 (68)
T PF14559_consen 23 DNPEARLLLAQCYLKQG---QYDEAEELLER 50 (68)
T ss_dssp TSHHHHHHHHHHHHHTT----HHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHcC---CHHHHHHHHHH
Confidence 68999999999999999 99999998865
No 67
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=53.33 E-value=54 Score=21.62 Aligned_cols=64 Identities=14% Similarity=0.129 Sum_probs=40.0
Q ss_pred CHHHHHHHHHHHHhcCCCcChHhhhhhhhcCCChHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 024660 159 SPELHVMLAEYLYSESPELDMARVSFHFVRGNNPEKFASTIVNFMGKCYPGEDDLAVARAILMYLSLGNMKDANYIMDEV 238 (264)
Q Consensus 159 dp~LH~~la~~~~~e~~~~~~~~A~~Hfl~~~d~~~~a~~L~ew~~~~~~~e~dlfiaRaVL~~L~l~n~~~A~~~~~~f 238 (264)
++..+..+|.+++..+ ++.+|..+|-.+-+ . .|...+.+ ......++..++...|...+...
T Consensus 33 ~~~~~~~~~~~~~~~~---~~~~a~~~~~~~~~-------------~-~~~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~ 94 (100)
T cd00189 33 NADAYYNLAAAYYKLG---KYEEALEDYEKALE-------------L-DPDNAKAY-YNLGLAYYKLGKYEEALEAYEKA 94 (100)
T ss_pred cHHHHHHHHHHHHHHH---HHHHHHHHHHHHHh-------------C-CCcchhHH-HHHHHHHHHHHhHHHHHHHHHHH
Confidence 4588999999999998 88888877643211 1 11222222 23334456677888888776665
Q ss_pred HH
Q 024660 239 KK 240 (264)
Q Consensus 239 ~~ 240 (264)
.+
T Consensus 95 ~~ 96 (100)
T cd00189 95 LE 96 (100)
T ss_pred Hc
Confidence 44
No 68
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=52.61 E-value=23 Score=21.00 Aligned_cols=26 Identities=15% Similarity=0.110 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHhcCCCcChHhhhhhhhc
Q 024660 160 PELHVMLAEYLYSESPELDMARVSFHFVR 188 (264)
Q Consensus 160 p~LH~~la~~~~~e~~~~~~~~A~~Hfl~ 188 (264)
|+.+..+|.+|..-+ ++.+|..+|-.
T Consensus 1 a~~~~~~g~~~~~~~---~~~~A~~~~~~ 26 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLG---DYEEALEYYQR 26 (34)
T ss_dssp HHHHHHHHHHHHHTT----HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhC---CchHHHHHHHH
Confidence 467888999999999 99999988743
No 69
>PF12854 PPR_1: PPR repeat
Probab=52.05 E-value=26 Score=21.68 Aligned_cols=23 Identities=30% Similarity=0.569 Sum_probs=20.8
Q ss_pred HHHHHHHHHHhhhCHHHHHHHHH
Q 024660 36 MYKSISARYVAAQRYSEALDLLH 58 (264)
Q Consensus 36 ~~RTl~~Ry~~~kk~~eAieLL~ 58 (264)
+|-+++.=|-+.|+.++|++++-
T Consensus 9 ty~~lI~~~Ck~G~~~~A~~l~~ 31 (34)
T PF12854_consen 9 TYNTLIDGYCKAGRVDEAFELFD 31 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHH
Confidence 68899999999999999999875
No 70
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.26 E-value=2.2e+02 Score=26.70 Aligned_cols=31 Identities=23% Similarity=0.301 Sum_probs=20.0
Q ss_pred CHHHHHHHHHHHHhcCCCcChHhhhhhhhcC
Q 024660 159 SPELHVMLAEYLYSESPELDMARVSFHFVRG 189 (264)
Q Consensus 159 dp~LH~~la~~~~~e~~~~~~~~A~~Hfl~~ 189 (264)
.|..|..+|++++..|+.+|+..|+.||-.+
T Consensus 187 n~l~f~rlae~~Yt~gg~eN~~~arkyy~~a 217 (289)
T KOG3060|consen 187 NPLYFQRLAEVLYTQGGAENLELARKYYERA 217 (289)
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4566666666666666666666666666543
No 71
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=48.58 E-value=2.4e+02 Score=26.64 Aligned_cols=113 Identities=13% Similarity=0.063 Sum_probs=70.6
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhhCCCCCChhH
Q 024660 16 ENIDKLEKIVNEGNFYGAQQMYKSISARYVAAQRYSEALDLLHAGACLQLKNNQLTCGAELAVSFVEALVKGKVAYDNEN 95 (264)
Q Consensus 16 r~l~rl~~~i~~G~~YEAhQ~~RTl~~Ry~~~kk~~eAieLL~~GA~~ll~~~Q~~sa~DL~~llvevl~~~~~~~~~~~ 95 (264)
+.+.+-...+..|+|.+|.+.|+-.....-. ..++++.-|..+++.|++..|...+.-.++.- |-+...
T Consensus 4 ~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~------~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-----P~~~~a 72 (356)
T PLN03088 4 DLEDKAKEAFVDDDFALAVDLYTQAIDLDPN------NAELYADRAQANIKLGNFTEAVADANKAIELD-----PSLAKA 72 (356)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----cCCHHH
Confidence 4566677888999999999998877754321 23456666778888888888887766665532 223344
Q ss_pred HHHHHHHHHhCCCCCCCCCCCCCchHHHHHHHHhhhhhhhhhhhHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHh
Q 024660 96 LDRVRKIYELFPQIPVPHNLEDDDDLHELTEALGAAKLRVEGCSSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYS 172 (264)
Q Consensus 96 ~~rl~~l~~~~p~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~~~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~~~~~ 172 (264)
.-++..++.....- ++....+++|++-. -+++++|.+++.+.-+
T Consensus 73 ~~~lg~~~~~lg~~--------------------------~eA~~~~~~al~l~-------P~~~~~~~~l~~~~~k 116 (356)
T PLN03088 73 YLRKGTACMKLEEY--------------------------QTAKAALEKGASLA-------PGDSRFTKLIKECDEK 116 (356)
T ss_pred HHHHHHHHHHhCCH--------------------------HHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHH
Confidence 45555555543211 11244555555422 3678888888887443
No 72
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=48.12 E-value=1.3e+02 Score=28.39 Aligned_cols=40 Identities=5% Similarity=-0.058 Sum_probs=31.5
Q ss_pred hHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHhcCCCcChHhhhhhhhc
Q 024660 139 SSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDMARVSFHFVR 188 (264)
Q Consensus 139 ~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~ 188 (264)
...+++||.-. -.++..|..+|.+|...| +|.+|..+|-.
T Consensus 56 l~~~~~Al~l~-------P~~~~a~~~lg~~~~~lg---~~~eA~~~~~~ 95 (356)
T PLN03088 56 VADANKAIELD-------PSLAKAYLRKGTACMKLE---EYQTAKAALEK 95 (356)
T ss_pred HHHHHHHHHhC-------cCCHHHHHHHHHHHHHhC---CHHHHHHHHHH
Confidence 45556666643 257889999999999999 99999999864
No 73
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=47.80 E-value=90 Score=28.57 Aligned_cols=65 Identities=9% Similarity=0.022 Sum_probs=37.4
Q ss_pred HHHHHHHHHH-hccCChhHHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHcCCcccHHHHHHHHHH
Q 024660 15 QENIDKLEKI-VNEGNFYGAQQMYKSISARYVAAQRYSEALDLLHAGACLQLKNNQLTCGAELAVSFVE 82 (264)
Q Consensus 15 ~r~l~rl~~~-i~~G~~YEAhQ~~RTl~~Ry~~~kk~~eAieLL~~GA~~ll~~~Q~~sa~DL~~llve 82 (264)
.......... ++.|+|.+|...++.+..+|-....... ..|-=+..++..|++..|.....-+++
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~---A~y~LG~~y~~~g~~~~A~~~f~~vv~ 208 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPN---ANYWLGQLNYNKGKKDDAAYYFASVVK 208 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHH---HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3344444444 5679999999999999998854332222 223444444555555555544444443
No 74
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=46.35 E-value=3.2e+02 Score=27.47 Aligned_cols=33 Identities=18% Similarity=0.138 Sum_probs=18.6
Q ss_pred CCchHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 024660 208 PGEDDLAVARAILMYLSLGNMKDANYIMDEVKKQ 241 (264)
Q Consensus 208 ~~e~dlfiaRaVL~~L~l~n~~~A~~~~~~f~~~ 241 (264)
|...+.+...+.+ |+..|+...|...++..++.
T Consensus 464 P~~~~~~~~lg~~-~~~~g~~~~A~~~~~~Al~l 496 (615)
T TIGR00990 464 PEAPDVYNYYGEL-LLDQNKFDEAIEKFDTAIEL 496 (615)
T ss_pred CCChHHHHHHHHH-HHHccCHHHHHHHHHHHHhc
Confidence 4444444444332 45577777777777666553
No 75
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=46.20 E-value=2.5e+02 Score=30.47 Aligned_cols=111 Identities=18% Similarity=0.238 Sum_probs=74.3
Q ss_pred hhHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHhcCCCcChHhhhhhhhcCCChHHHHHHHHH--HHh-----------
Q 024660 138 CSSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDMARVSFHFVRGNNPEKFASTIVN--FMG----------- 204 (264)
Q Consensus 138 ~~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~~~d~~~~a~~L~e--w~~----------- 204 (264)
...|++....|+-.. --++||+..+.-|-+.| ...+|..|-+...||+..++.|-. |.-
T Consensus 330 FaeFL~~r~~~~~~~-----~~~~lH~~Aa~w~~~~g---~~~eAI~hAlaA~d~~~aa~lle~~~~~L~~~~~lsll~~ 401 (894)
T COG2909 330 FAEFLRQRLQRELAA-----RLKELHRAAAEWFAEHG---LPSEAIDHALAAGDPEMAADLLEQLEWQLFNGSELSLLLA 401 (894)
T ss_pred HHHHHHhhhccccCC-----chhHHHHHHHHHHHhCC---ChHHHHHHHHhCCCHHHHHHHHHhhhhhhhcccchHHHHH
Confidence 578888888886432 34789999999999889 899999999999999988888744 421
Q ss_pred --hcCC-----CchHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhhhcCCCCCchhHH
Q 024660 205 --KCYP-----GEDDLAVARAILMYLSLGNMKDANYIMDEVKKQVENKQLQLQPSDLIQF 257 (264)
Q Consensus 205 --~~~~-----~e~dlfiaRaVL~~L~l~n~~~A~~~~~~f~~~~~~~~~~~~~~PLLNF 257 (264)
+.-| +.+-+.|..+ ....+...+..|+.++..+...++.+..++...++.-|
T Consensus 402 ~~~~lP~~~l~~~P~Lvll~a-W~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~ 460 (894)
T COG2909 402 WLKALPAELLASTPRLVLLQA-WLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEF 460 (894)
T ss_pred HHHhCCHHHHhhCchHHHHHH-HHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHH
Confidence 1112 1222233333 23345778899999999888776654333323343333
No 76
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=45.36 E-value=3.4e+02 Score=27.37 Aligned_cols=80 Identities=11% Similarity=0.139 Sum_probs=50.7
Q ss_pred hHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHhcCCCcChHhhhhhhhcCCChHHHHHHHHHHHhhcCCCchHHHHHHH
Q 024660 139 SSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDMARVSFHFVRGNNPEKFASTIVNFMGKCYPGEDDLAVARA 218 (264)
Q Consensus 139 ~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~~~d~~~~a~~L~ew~~~~~~~e~dlfiaRa 218 (264)
...+++|+.-. -.+|+++..+|.+++..| ++.+|..+|-.+- +-.|.....++.++
T Consensus 385 ~~~~~~al~~~-------p~~~~~~~~lg~~~~~~g---~~~~A~~~~~kal--------------~l~P~~~~~~~~la 440 (615)
T TIGR00990 385 EEDFDKALKLN-------SEDPDIYYHRAQLHFIKG---EFAQAGKDYQKSI--------------DLDPDFIFSHIQLG 440 (615)
T ss_pred HHHHHHHHHhC-------CCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHH--------------HcCccCHHHHHHHH
Confidence 45555555431 257899999999999999 9999988874321 11233333444444
Q ss_pred HHHHHhcCChhHHHHHHHHHHHHhh
Q 024660 219 ILMYLSLGNMKDANYIMDEVKKQVE 243 (264)
Q Consensus 219 VL~~L~l~n~~~A~~~~~~f~~~~~ 243 (264)
++ +...|+...|...++..++..|
T Consensus 441 ~~-~~~~g~~~eA~~~~~~al~~~P 464 (615)
T TIGR00990 441 VT-QYKEGSIASSMATFRRCKKNFP 464 (615)
T ss_pred HH-HHHCCCHHHHHHHHHHHHHhCC
Confidence 43 3467777777777777665443
No 77
>PF14223 UBN2: gag-polypeptide of LTR copia-type
Probab=44.99 E-value=1.4e+02 Score=23.04 Aligned_cols=74 Identities=20% Similarity=0.205 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHcCCcccHHHHHHHH---HHHHhhCCCCCChhHHHHHHHHHHhCCC
Q 024660 33 AQQMYKSISARYVAAQRYSEALDLLHAGACLQLKNNQLTCGAELAVSF---VEALVKGKVAYDNENLDRVRKIYELFPQ 108 (264)
Q Consensus 33 AhQ~~RTl~~Ry~~~kk~~eAieLL~~GA~~ll~~~Q~~sa~DL~~ll---vevl~~~~~~~~~~~~~rl~~l~~~~p~ 108 (264)
|+++..+|-.+|....+..++.-........-++.+...+-.|-..-+ +.-+...|.++++. ..+..|+..+|+
T Consensus 3 A~e~W~~L~~~y~~~~~~~~~~~~~L~~~l~~~k~~~~~sv~~y~~~~~~i~~~L~~~g~~i~d~--~~v~~iL~~Lp~ 79 (119)
T PF14223_consen 3 AKEAWDALKKRYEGQSKVKQARVQQLKSQLENLKMKDGESVDEYISRLKEIVDELRAIGKPISDE--DLVSKILRSLPP 79 (119)
T ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHhhhhhhhcCCcccch--hHHHHHHhcCCc
Confidence 789999999999999988888888888888888877777776654443 45556677777754 455677778873
No 78
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=44.46 E-value=87 Score=28.87 Aligned_cols=62 Identities=21% Similarity=0.264 Sum_probs=42.5
Q ss_pred HHHHhhhCHHHHHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhhCCCCCChhHHHHHHHHHHhCC
Q 024660 42 ARYVAAQRYSEALDLLHAGACLQLKNNQLTCGAELAVSFVEALVKGKVAYDNENLDRVRKIYELFP 107 (264)
Q Consensus 42 ~Ry~~~kk~~eAieLL~~GA~~ll~~~Q~~sa~DL~~llvevl~~~~~~~~~~~~~rl~~l~~~~p 107 (264)
...+..++|..|++++.+--..+-+.+++.|..+|..-+-+.+..-...++ ..+.++...|.
T Consensus 135 ~~ll~~~dy~~Al~li~~~~~~l~~l~~~~c~~~L~~~L~e~~~~i~~~ld----~~l~~~~~~Fd 196 (291)
T PF10475_consen 135 QELLEEGDYPGALDLIEECQQLLEELKGYSCVRHLSSQLQETLELIEEQLD----SDLSKVCQDFD 196 (291)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHhcccchHHHHHhHHHHHHHHHHHHHHH----HHHHHHHHhCC
Confidence 344667888888888887777777789999999999888777765433222 33444555553
No 79
>PF13838 Clathrin_H_link: Clathrin-H-link; PDB: 2XZG_A 3GD1_I 1BPO_C 1C9I_B 1C9L_A.
Probab=44.04 E-value=37 Score=24.97 Aligned_cols=29 Identities=21% Similarity=0.346 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHhhhCHHHHHHHHHHH
Q 024660 32 GAQQMYKSISARYVAAQRYSEALDLLHAG 60 (264)
Q Consensus 32 EAhQ~~RTl~~Ry~~~kk~~eAieLL~~G 60 (264)
+|-.+|..-+++++.+++|.+|..+.-+.
T Consensus 4 Gad~l~~~~F~~l~~~g~y~eAA~~AA~s 32 (66)
T PF13838_consen 4 GADDLYVQQFNELFSQGQYEEAAKVAANS 32 (66)
T ss_dssp S-HHHHHHHHHHHHHTT-HHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHhC
Confidence 35667888888888888888888876543
No 80
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=43.73 E-value=2.1e+02 Score=24.61 Aligned_cols=28 Identities=14% Similarity=0.178 Sum_probs=24.2
Q ss_pred CCHHHHHHHHHHHHhcCCCcChHhhhhhhhc
Q 024660 158 GSPELHVMLAEYLYSESPELDMARVSFHFVR 188 (264)
Q Consensus 158 Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~ 188 (264)
.++..|..+|..+.+.| +|.+|..|+-.
T Consensus 142 ~~~~al~~LA~~~~~~g---~~~~Ai~~~~~ 169 (198)
T PRK10370 142 NEVTALMLLASDAFMQA---DYAQAIELWQK 169 (198)
T ss_pred CChhHHHHHHHHHHHcC---CHHHHHHHHHH
Confidence 57789999999999999 99999888743
No 81
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=43.35 E-value=59 Score=21.99 Aligned_cols=54 Identities=4% Similarity=0.030 Sum_probs=33.0
Q ss_pred HHHhccCChhHHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHcCCcccHHHHHHHHH
Q 024660 22 EKIVNEGNFYGAQQMYKSISARYVAAQRYSEALDLLHAGACLQLKNNQLTCGAELAVSFV 81 (264)
Q Consensus 22 ~~~i~~G~~YEAhQ~~RTl~~Ry~~~kk~~eAieLL~~GA~~ll~~~Q~~sa~DL~~llv 81 (264)
...++.|+|=+|...|+.+..+. .+..+.++.=+..+.+.|++..|....--.+
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQD------PDNPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCS------TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34566777777777777766554 3355556666666667777776665544443
No 82
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=43.03 E-value=48 Score=19.05 Aligned_cols=24 Identities=21% Similarity=0.375 Sum_probs=20.0
Q ss_pred HHHhcCChhHHHHHHHHHHHHhhh
Q 024660 221 MYLSLGNMKDANYIMDEVKKQVEN 244 (264)
Q Consensus 221 ~~L~l~n~~~A~~~~~~f~~~~~~ 244 (264)
.|.-.|+...|...|+.+++++|+
T Consensus 9 ~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 9 CYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHccCHHHHHHHHHHHHHHCcC
Confidence 344589999999999999998774
No 83
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=41.55 E-value=5.2e+02 Score=28.44 Aligned_cols=37 Identities=16% Similarity=0.176 Sum_probs=24.5
Q ss_pred cCCCchHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhh
Q 024660 206 CYPGEDDLAVARAILMYLSLGNMKDANYIMDEVKKQVE 243 (264)
Q Consensus 206 ~~~~e~dlfiaRaVL~~L~l~n~~~A~~~~~~f~~~~~ 243 (264)
..|...++...++. .|..+|+...|...++.-++.-|
T Consensus 672 l~P~~~~a~~nLA~-al~~lGd~~eA~~~l~~Al~l~P 708 (987)
T PRK09782 672 GLPDDPALIRQLAY-VNQRLDDMAATQHYARLVIDDID 708 (987)
T ss_pred hCCCCHHHHHHHHH-HHHHCCCHHHHHHHHHHHHhcCC
Confidence 34666666665555 44778888888887777665443
No 84
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=40.84 E-value=4.2e+02 Score=27.16 Aligned_cols=64 Identities=8% Similarity=-0.059 Sum_probs=37.4
Q ss_pred HHHHHHHHHHhhhCHHHHHHHHHH-----------HHHHHHHcCCcccHHHHHHHHHHHHhhCCCCCChhHHHHHHHHH
Q 024660 36 MYKSISARYVAAQRYSEALDLLHA-----------GACLQLKNNQLTCGAELAVSFVEALVKGKVAYDNENLDRVRKIY 103 (264)
Q Consensus 36 ~~RTl~~Ry~~~kk~~eAieLL~~-----------GA~~ll~~~Q~~sa~DL~~llvevl~~~~~~~~~~~~~rl~~l~ 103 (264)
+|-++..-|.+.+++++|.+++.+ -...+.+.|++..|-++...|+ +.++.++...+.-++...
T Consensus 160 ~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~----~~g~~p~~~t~~~ll~a~ 234 (697)
T PLN03081 160 MMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMW----EDGSDAEPRTFVVMLRAS 234 (697)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHH----HhCCCCChhhHHHHHHHH
Confidence 345566677778888888877532 2234556677766666654443 445666655554444433
No 85
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=40.23 E-value=51 Score=25.17 Aligned_cols=64 Identities=19% Similarity=0.218 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHcCC---cccHHHHHHHHHHHHhhCCCCCChhHHHHHHHHH
Q 024660 35 QMYKSISARYVAAQRYSEALDLLHAGACLQLKNNQ---LTCGAELAVSFVEALVKGKVAYDNENLDRVRKIY 103 (264)
Q Consensus 35 Q~~RTl~~Ry~~~kk~~eAieLL~~GA~~ll~~~Q---~~sa~DL~~llvevl~~~~~~~~~~~~~rl~~l~ 103 (264)
+.---+.-.++..|+|.+|++.|. .+++... -+.+=..++-+.+++... .|+..+...+|..++
T Consensus 23 ~ar~~lA~~~~~~g~~e~Al~~Ll----~~v~~dr~~~~~~ar~~ll~~f~~lg~~-~plv~~~RRkL~~lL 89 (90)
T PF14561_consen 23 DARYALADALLAAGDYEEALDQLL----ELVRRDRDYEDDAARKRLLDIFELLGPG-DPLVSEYRRKLASLL 89 (90)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHH----HHHCC-TTCCCCHHHHHHHHHHHHH-TT--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHH----HHHHhCccccccHHHHHHHHHHHHcCCC-ChHHHHHHHHHHHHh
Confidence 333456778999999999999998 5666532 234445544444444443 245556666666543
No 86
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=40.15 E-value=70 Score=19.24 Aligned_cols=28 Identities=32% Similarity=0.549 Sum_probs=18.8
Q ss_pred HHHHHHHHHhhhCHHHHHHHHHHHHHHH
Q 024660 37 YKSISARYVAAQRYSEALDLLHAGACLQ 64 (264)
Q Consensus 37 ~RTl~~Ry~~~kk~~eAieLL~~GA~~l 64 (264)
+-.+..-|..+++|++|.+++.+.....
T Consensus 5 ~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 5 LNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 4456677778888888888877665443
No 87
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=39.40 E-value=2e+02 Score=25.51 Aligned_cols=40 Identities=10% Similarity=-0.001 Sum_probs=20.8
Q ss_pred HHHHHhhhhcCCCCCCCHHHHHHHHHHHHhcCCCcChHhhhhh
Q 024660 143 KAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDMARVSFH 185 (264)
Q Consensus 143 ~~ai~WS~~~g~~~~Gdp~LH~~la~~~~~e~~~~~~~~A~~H 185 (264)
+.|+.|-.+.-...-+||..+..+|.++...| .+.+|...
T Consensus 231 ~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g---~~~~A~~~ 270 (280)
T PF13429_consen 231 EEALEYLEKALKLNPDDPLWLLAYADALEQAG---RKDEALRL 270 (280)
T ss_dssp HHHHHHHHHHHHHSTT-HHHHHHHHHHHT--------------
T ss_pred cccccccccccccccccccccccccccccccc---cccccccc
Confidence 45666666543334689999999999999999 88777653
No 88
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.28 E-value=2.1e+02 Score=27.75 Aligned_cols=28 Identities=32% Similarity=0.693 Sum_probs=22.3
Q ss_pred hccCChhHHHHHHHHHHHHHHhhhCHHHHHHHHHH
Q 024660 25 VNEGNFYGAQQMYKSISARYVAAQRYSEALDLLHA 59 (264)
Q Consensus 25 i~~G~~YEAhQ~~RTl~~Ry~~~kk~~eAieLL~~ 59 (264)
|.+|+| -++..|.++-++|.+||++|.+
T Consensus 8 i~EGef-------taviy~lI~d~ry~DaI~~l~s 35 (459)
T KOG4340|consen 8 IPEGEF-------TAVVYRLIRDARYADAIQLLGS 35 (459)
T ss_pred CCCCch-------HHHHHHHHHHhhHHHHHHHHHH
Confidence 566765 3567788999999999999974
No 89
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=39.15 E-value=1.5e+02 Score=21.66 Aligned_cols=62 Identities=13% Similarity=0.127 Sum_probs=34.0
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHcCCcccHHHHHHHHHH
Q 024660 18 IDKLEKIVNEGNFYGAQQMYKSISARYVAAQRYSEALDLLHAGACLQLKNNQLTCGAELAVSFVE 82 (264)
Q Consensus 18 l~rl~~~i~~G~~YEAhQ~~RTl~~Ry~~~kk~~eAieLL~~GA~~ll~~~Q~~sa~DL~~llve 82 (264)
...-...+..|+|-+|...++.+..++-.. ....+..+.=+..+++.|++..|.++...++.
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 67 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKS---TYAPNAHYWLGEAYYAQGKYADAAKAFLAVVK 67 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCc---cccHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 344455667778888877777776543211 11123344445556666666666555544443
No 90
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.06 E-value=1e+02 Score=31.51 Aligned_cols=48 Identities=21% Similarity=0.479 Sum_probs=39.7
Q ss_pred HHHHHHHhhhhcCCC---CCCCHHHHHHHHHHHHhcCCCcChHhhhhhhhcCCC
Q 024660 141 FLKAAIKWSIEFGAP---KTGSPELHVMLAEYLYSESPELDMARVSFHFVRGNN 191 (264)
Q Consensus 141 fl~~ai~WS~~~g~~---~~Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~~~d 191 (264)
=|..+-.|+...+.+ .+-.|.+|-++|.+...-+ -|+.|+.||+-+..
T Consensus 345 ~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~---~~enAe~hf~~a~k 395 (629)
T KOG2300|consen 345 EIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVN---CYENAEFHFIEATK 395 (629)
T ss_pred HHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcc---hHHHHHHHHHHHHH
Confidence 356678899987542 2568999999999999999 99999999997665
No 91
>PRK12370 invasion protein regulator; Provisional
Probab=38.85 E-value=4.1e+02 Score=26.55 Aligned_cols=26 Identities=8% Similarity=0.107 Sum_probs=12.1
Q ss_pred CHHHHHHHHHHHHhcCCCcChHhhhhhhh
Q 024660 159 SPELHVMLAEYLYSESPELDMARVSFHFV 187 (264)
Q Consensus 159 dp~LH~~la~~~~~e~~~~~~~~A~~Hfl 187 (264)
++..|..+|.++...| ++.+|..||-
T Consensus 371 ~~~a~~~lg~~l~~~G---~~~eAi~~~~ 396 (553)
T PRK12370 371 SADIKYYYGWNLFMAG---QLEEALQTIN 396 (553)
T ss_pred CHHHHHHHHHHHHHCC---CHHHHHHHHH
Confidence 3444444444444444 4444444443
No 92
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.26 E-value=1.5e+02 Score=27.54 Aligned_cols=76 Identities=21% Similarity=0.303 Sum_probs=52.3
Q ss_pred CCCCC--CHHHHHHHHHHHHhcCCCcChHhhhhhhhcCCChHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhcCChhHH
Q 024660 154 APKTG--SPELHVMLAEYLYSESPELDMARVSFHFVRGNNPEKFASTIVNFMGKCYPGEDDLAVARAILMYLSLGNMKDA 231 (264)
Q Consensus 154 ~~~~G--dp~LH~~la~~~~~e~~~~~~~~A~~Hfl~~~d~~~~a~~L~ew~~~~~~~e~dlfiaRaVL~~L~l~n~~~A 231 (264)
.+|.| .|.=|.|||+.++.-| +|..|...|+ .+.-+| -++. --+| -+........-++|...|
T Consensus 170 ~YP~s~~~~nA~yWLGe~~y~qg---~y~~Aa~~f~---------~~~k~~-P~s~-KApd-allKlg~~~~~l~~~d~A 234 (262)
T COG1729 170 KYPNSTYTPNAYYWLGESLYAQG---DYEDAAYIFA---------RVVKDY-PKSP-KAPD-ALLKLGVSLGRLGNTDEA 234 (262)
T ss_pred cCCCCcccchhHHHHHHHHHhcc---cchHHHHHHH---------HHHHhC-CCCC-CChH-HHHHHHHHHHHhcCHHHH
Confidence 34555 5678999999999999 9988877665 333333 1221 1222 233444555778999999
Q ss_pred HHHHHHHHHHhhh
Q 024660 232 NYIMDEVKKQVEN 244 (264)
Q Consensus 232 ~~~~~~f~~~~~~ 244 (264)
..+++...++.|.
T Consensus 235 ~atl~qv~k~YP~ 247 (262)
T COG1729 235 CATLQQVIKRYPG 247 (262)
T ss_pred HHHHHHHHHHCCC
Confidence 9999999988764
No 93
>COG5443 FlbT Flagellar biosynthesis regulator FlbT [Cell motility and secretion]
Probab=37.67 E-value=27 Score=29.28 Aligned_cols=30 Identities=10% Similarity=0.262 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHhccCChhHHHHHHHHHHHH
Q 024660 14 AQENIDKLEKIVNEGNFYGAQQMYKSISAR 43 (264)
Q Consensus 14 ~~r~l~rl~~~i~~G~~YEAhQ~~RTl~~R 43 (264)
+-.-+.++...+-+|.+|||.-.+|.+|-+
T Consensus 94 il~~lk~Id~lV~~~~~feALkaiR~lyp~ 123 (148)
T COG5443 94 ILAALKRIDGLVMAGRAFEALKAIRGLYPI 123 (148)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHhhhchh
Confidence 344577888999999999999999999865
No 94
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=37.15 E-value=29 Score=27.52 Aligned_cols=31 Identities=23% Similarity=0.223 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHhhhCHHHHHHHHHHHHH
Q 024660 32 GAQQMYKSISARYVAAQRYSEALDLLHAGAC 62 (264)
Q Consensus 32 EAhQ~~RTl~~Ry~~~kk~~eAieLL~~GA~ 62 (264)
+.|++|+.++-=|-.+|+|.+|++++.+=+.
T Consensus 37 ~~~~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 37 KEHGKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHcCCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 5677888888889999999999999986554
No 95
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=37.08 E-value=45 Score=20.60 Aligned_cols=23 Identities=17% Similarity=0.160 Sum_probs=21.0
Q ss_pred CCHHHHHHHHHHHHhcCCCcChHhhh
Q 024660 158 GSPELHVMLAEYLYSESPELDMARVS 183 (264)
Q Consensus 158 Gdp~LH~~la~~~~~e~~~~~~~~A~ 183 (264)
.+++.+..+|.+|...| ++.+|+
T Consensus 11 ~n~~a~~nla~~~~~~g---~~~~A~ 33 (34)
T PF13431_consen 11 NNAEAYNNLANLYLNQG---DYEEAI 33 (34)
T ss_pred CCHHHHHHHHHHHHHCc---CHHhhc
Confidence 68899999999999999 998886
No 96
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=36.22 E-value=51 Score=18.61 Aligned_cols=23 Identities=26% Similarity=0.590 Sum_probs=18.3
Q ss_pred HHHHHHHHHHhhhCHHHHHHHHH
Q 024660 36 MYKSISARYVAAQRYSEALDLLH 58 (264)
Q Consensus 36 ~~RTl~~Ry~~~kk~~eAieLL~ 58 (264)
+|.++.+=|.+.+++++|.+++.
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~ 24 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFD 24 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHH
Confidence 46778888888888888888765
No 97
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=35.45 E-value=2.9e+02 Score=30.34 Aligned_cols=158 Identities=18% Similarity=0.274 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhCHHHHHHHHHHHH----HHHHHc--CCcccHHHHHHHHH-HHHhhCCCCCChhHHHHHHHHHHhCCC
Q 024660 36 MYKSISARYVAAQRYSEALDLLHAGA----CLQLKN--NQLTCGAELAVSFV-EALVKGKVAYDNENLDRVRKIYELFPQ 108 (264)
Q Consensus 36 ~~RTl~~Ry~~~kk~~eAieLL~~GA----~~ll~~--~Q~~sa~DL~~llv-evl~~~~~~~~~~~~~rl~~l~~~~p~ 108 (264)
.+-+++-=|-++|+.++.+-||.+|. ...-.. .|.-..-=|+.++. +++++.+-..-++....-+-+|.
T Consensus 43 ~wi~~AleYy~~gk~eefi~iLE~g~~~~~~~y~d~~~~~~~a~~~laay~s~~a~kek~~~~k~e~~~~at~~~~---- 118 (1018)
T KOG2002|consen 43 AWIEIALEYYKQGKTEEFIKILESGLIDANEEYADVKSDQMKALDILAAYYSQLAMKEKKKDEKDELFDKATLLFD---- 118 (1018)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHhhhhcccchhcchHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhh----
Q ss_pred CCCCCCCCCCchHHHHHHHHhhhhhhhhhhhHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHhcCCC-cChHhhhhhhh
Q 024660 109 IPVPHNLEDDDDLHELTEALGAAKLRVEGCSSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPE-LDMARVSFHFV 187 (264)
Q Consensus 109 ~~~~r~l~~~~~~~~~~~~~~~~~~~~~~~~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~~~~~e~~~-~~~~~A~~Hfl 187 (264)
..|....... ++--.|..+ ||.+++. .+-..|..|||
T Consensus 119 -------------------------------------~A~ki~m~~~--~~l~~~~~~---~l~~~~~~~~~A~a~F~~V 156 (1018)
T KOG2002|consen 119 -------------------------------------LADKIDMYED--SHLLVQRGF---LLLEGDKSMDDADAQFHFV 156 (1018)
T ss_pred -------------------------------------HHHHhhccCc--chhhhhhhh---hhhcCCccHHHHHHHHHHH
Q ss_pred cCCChH----HHHHHHHHHHhhcCCC---------------chHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 024660 188 RGNNPE----KFASTIVNFMGKCYPG---------------EDDLAVARAILMYLSLGNMKDANYIMDEVKK 240 (264)
Q Consensus 188 ~~~d~~----~~a~~L~ew~~~~~~~---------------e~dlfiaRaVL~~L~l~n~~~A~~~~~~f~~ 240 (264)
+-++|. .++..-+.+-++.|.+ -.|.+|.++ ++++-+++...|...|..+.+
T Consensus 157 l~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig-~Cf~kl~~~~~a~~a~~ralq 227 (1018)
T KOG2002|consen 157 LKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIG-HCFWKLGMSEKALLAFERALQ 227 (1018)
T ss_pred HhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhh-hHHHhccchhhHHHHHHHHHh
No 98
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=34.35 E-value=1.8e+02 Score=26.07 Aligned_cols=47 Identities=19% Similarity=0.198 Sum_probs=33.4
Q ss_pred HHHHhhhCHHHHHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhhCC
Q 024660 42 ARYVAAQRYSEALDLLHAGACLQLKNNQLTCGAELAVSFVEALVKGK 88 (264)
Q Consensus 42 ~Ry~~~kk~~eAieLL~~GA~~ll~~~Q~~sa~DL~~llvevl~~~~ 88 (264)
.=|.+.|+|++|++++..-+..+-+.|=+...+++...+.+++...+
T Consensus 186 ~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~ 232 (247)
T PF11817_consen 186 EEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLG 232 (247)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC
Confidence 33566677777777777776666667777777777777777777665
No 99
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.03 E-value=4.2e+02 Score=25.26 Aligned_cols=138 Identities=15% Similarity=0.143 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHhhCCCCCChhHHHHHHHHHHhCCCCCCCCCCCCCchHHHHHHHHhhhhhhh
Q 024660 56 LLHAGACLQLKNNQLTCGAELAVSFVEALVKGKVAYDNENLDRVRKIYELFPQIPVPHNLEDDDDLHELTEALGAAKLRV 135 (264)
Q Consensus 56 LL~~GA~~ll~~~Q~~sa~DL~~llvevl~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~l~~~~~~~~~~~~~~~~~~~~ 135 (264)
..|.-+..++-+|+++...|+..-+++ ..-|.++.-+..|..+-=.+.+.
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~----~~~e~~p~L~s~Lgr~~MQ~GD~-------------------------- 228 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIK----YYPEQEPQLLSGLGRISMQIGDI-------------------------- 228 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHH----hCCcccHHHHHHHHHHHHhcccH--------------------------
Confidence 356667788899999999998777766 22344444555555554433221
Q ss_pred hhhhHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHhcCCCcChHhhhhhh--hcCCChHHHHHHHHHHHhhcCCCchHH
Q 024660 136 EGCSSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDMARVSFHF--VRGNNPEKFASTIVNFMGKCYPGEDDL 213 (264)
Q Consensus 136 ~~~~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~~~~~e~~~~~~~~A~~Hf--l~~~d~~~~a~~L~ew~~~~~~~e~dl 213 (264)
+++++.-++.-|=..+-. .-.|.--.|..-|.+|.-.+ |+..|.+-| +.-.|++. ..
T Consensus 229 k~a~~yf~~vek~~~kL~-~~q~~~~V~~n~a~i~lg~n---n~a~a~r~~~~i~~~D~~~-----------------~~ 287 (366)
T KOG2796|consen 229 KTAEKYFQDVEKVTQKLD-GLQGKIMVLMNSAFLHLGQN---NFAEAHRFFTEILRMDPRN-----------------AV 287 (366)
T ss_pred HHHHHHHHHHHHHHhhhh-ccchhHHHHhhhhhheeccc---chHHHHHHHhhccccCCCc-----------------hh
Confidence 122444444333333322 12456667777777777666 776665555 44444321 13
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHHhhh
Q 024660 214 AVARAILMYLSLGNMKDANYIMDEVKKQVEN 244 (264)
Q Consensus 214 fiaRaVL~~L~l~n~~~A~~~~~~f~~~~~~ 244 (264)
++---.|..|.+|++.||.+.++.-+++.|.
T Consensus 288 a~NnKALcllYlg~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 288 ANNNKALCLLYLGKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred hhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 4445567788899999999999888877653
No 100
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=33.57 E-value=4.3e+02 Score=25.17 Aligned_cols=75 Identities=17% Similarity=0.141 Sum_probs=47.7
Q ss_pred CCCHHHHHHHHHHHHhcCCCcChHhhhhhhhc-----------------------CCChHHHHHHHHHHHhhcCCCch--
Q 024660 157 TGSPELHVMLAEYLYSESPELDMARVSFHFVR-----------------------GNNPEKFASTIVNFMGKCYPGED-- 211 (264)
Q Consensus 157 ~Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~-----------------------~~d~~~~a~~L~ew~~~~~~~e~-- 211 (264)
..+|+++..+|..+...| ++.+|...+-- .+|++..-+.+-.|.+. .|.+.
T Consensus 260 ~~~~~l~~~~a~~l~~~g---~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~-~p~~~~~ 335 (409)
T TIGR00540 260 RHNIALKIALAEHLIDCD---DHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN-VDDKPKC 335 (409)
T ss_pred hCCHHHHHHHHHHHHHCC---ChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh-CCCChhH
Confidence 468999999999999988 55544433321 23344444555556543 35666
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHH
Q 024660 212 DLAVARAILMYLSLGNMKDANYIMD 236 (264)
Q Consensus 212 dlfiaRaVL~~L~l~n~~~A~~~~~ 236 (264)
.+..+-+-+. +-.++...|...|+
T Consensus 336 ~ll~sLg~l~-~~~~~~~~A~~~le 359 (409)
T TIGR00540 336 CINRALGQLL-MKHGEFIEAADAFK 359 (409)
T ss_pred HHHHHHHHHH-HHcccHHHHHHHHH
Confidence 5544555544 55788999998877
No 101
>PF08625 Utp13: Utp13 specific WD40 associated domain; InterPro: IPR013934 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]. This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. Utp13 is a nucleolar protein and component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA []. Upt13 is also a component of the Pwp2 complex that forms part of a stable particle subunit independent of the U3 small nucleolar ribonucleoprotein that is essential for the initial assembly steps of the 90S pre-ribosome []. Components of the Pwp2 complex are: Utp1 (Pwp2), Utp6, Utp12 (Dip2), Utp13, Utp18, and Utp21. The relationship between the Pwp2 complex and the t-Utps complex [] that also associates with the 5' end of nascent pre-18S rRNA is unclear. ; GO: 0006364 rRNA processing, 0032040 small-subunit processome
Probab=33.49 E-value=91 Score=25.99 Aligned_cols=14 Identities=14% Similarity=0.396 Sum_probs=12.3
Q ss_pred hHHHHHHHHhhhhc
Q 024660 139 SSFLKAAIKWSIEF 152 (264)
Q Consensus 139 ~~fl~~ai~WS~~~ 152 (264)
.++++.+..|.++.
T Consensus 64 ~~LL~~ir~WNTNs 77 (141)
T PF08625_consen 64 EKLLRFIRDWNTNS 77 (141)
T ss_pred HHHHHHHHHhhccc
Confidence 88999999999865
No 102
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=33.43 E-value=55 Score=20.16 Aligned_cols=22 Identities=9% Similarity=0.018 Sum_probs=17.5
Q ss_pred HHHHHHHHHhcCCCcChHhhhhhhh
Q 024660 163 HVMLAEYLYSESPELDMARVSFHFV 187 (264)
Q Consensus 163 H~~la~~~~~e~~~~~~~~A~~Hfl 187 (264)
+..||.+|.+.| ++.+|..++-
T Consensus 2 l~~Lg~~~~~~g---~~~~Ai~~y~ 23 (36)
T PF13176_consen 2 LNNLGRIYRQQG---DYEKAIEYYE 23 (36)
T ss_dssp HHHHHHHHHHCT----HHHHHHHHH
T ss_pred HHHHHHHHHHcC---CHHHHHHHHH
Confidence 356899999999 9999988774
No 103
>PRK11189 lipoprotein NlpI; Provisional
Probab=32.74 E-value=3.8e+02 Score=24.34 Aligned_cols=28 Identities=14% Similarity=0.103 Sum_probs=24.5
Q ss_pred CCHHHHHHHHHHHHhcCCCcChHhhhhhhhc
Q 024660 158 GSPELHVMLAEYLYSESPELDMARVSFHFVR 188 (264)
Q Consensus 158 Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~ 188 (264)
.+|+.|..+|.++...+ ++..|...|-.
T Consensus 96 ~~~~a~~~lg~~~~~~g---~~~~A~~~~~~ 123 (296)
T PRK11189 96 DMADAYNYLGIYLTQAG---NFDAAYEAFDS 123 (296)
T ss_pred CCHHHHHHHHHHHHHCC---CHHHHHHHHHH
Confidence 57899999999999999 99998887754
No 104
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=32.08 E-value=52 Score=30.32 Aligned_cols=31 Identities=19% Similarity=0.448 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHhccCChhHHHHHHHHHHHHH
Q 024660 14 AQENIDKLEKIVNEGNFYGAQQMYKSISARY 44 (264)
Q Consensus 14 ~~r~l~rl~~~i~~G~~YEAhQ~~RTl~~Ry 44 (264)
+..+..+++..+++|||..|.+++.+.-.-.
T Consensus 127 v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l 157 (291)
T PF10475_consen 127 VQQTQSRLQELLEEGDYPGALDLIEECQQLL 157 (291)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 4556677778888888888888887766554
No 105
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.46 E-value=6.3e+02 Score=26.45 Aligned_cols=90 Identities=11% Similarity=-0.031 Sum_probs=57.5
Q ss_pred hhhhcCCCCCCCHHHHHHHHHHHHhcCCCcChHhhhhhhhcCCChHHHHHHHHHH-H-hhcCCCchHHHHHHHHHHHHhc
Q 024660 148 WSIEFGAPKTGSPELHVMLAEYLYSESPELDMARVSFHFVRGNNPEKFASTIVNF-M-GKCYPGEDDLAVARAILMYLSL 225 (264)
Q Consensus 148 WS~~~g~~~~Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~~~d~~~~a~~L~ew-~-~~~~~~e~dlfiaRaVL~~L~l 225 (264)
|-......+-++-++-.--|-++...| +|.+|+.-+.-+.+ .|-+-|.+= . .++..+|.+..-.+.-+-+.-+
T Consensus 163 ~~q~v~~v~e~syel~yN~Ac~~i~~g---ky~qA~elL~kA~~--~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~ 237 (652)
T KOG2376|consen 163 LLQSVPEVPEDSYELLYNTACILIENG---KYNQAIELLEKALR--ICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQ 237 (652)
T ss_pred HHHhccCCCcchHHHHHHHHHHHHhcc---cHHHHHHHHHHHHH--HHHHhhcccccchhhHHHHHHHHHHHHHHHHHHh
Confidence 666666667888899999999999999 99999887665521 011111100 0 1233345555555555555668
Q ss_pred CChhHHHHHHHHHHHHh
Q 024660 226 GNMKDANYIMDEVKKQV 242 (264)
Q Consensus 226 ~n~~~A~~~~~~f~~~~ 242 (264)
|....|...+..+++..
T Consensus 238 Gqt~ea~~iy~~~i~~~ 254 (652)
T KOG2376|consen 238 GQTAEASSIYVDIIKRN 254 (652)
T ss_pred cchHHHHHHHHHHHHhc
Confidence 89999998877777644
No 106
>cd00390 Urease_gamma Urease gamma-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=31.16 E-value=1.1e+02 Score=24.15 Aligned_cols=48 Identities=21% Similarity=0.214 Sum_probs=37.4
Q ss_pred HHHHHhhh---CHHHHHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhhCCCC
Q 024660 41 SARYVAAQ---RYSEALDLLHAGACLQLKNNQLTCGAELAVSFVEALVKGKVA 90 (264)
Q Consensus 41 ~~Ry~~~k---k~~eAieLL~~GA~~ll~~~Q~~sa~DL~~llvevl~~~~~~ 90 (264)
+.|...+| +|.||+.|+..-.....+.|. +-+||+..--.+|....+-
T Consensus 17 A~~R~~rGlkLN~pEAvAlIs~~v~E~aRdG~--svaelm~~g~~~L~~d~Vm 67 (96)
T cd00390 17 ARKRLARGLKLNYPEAVALIADEILEGARDGK--SVAELMSLGKTVLTRDDVM 67 (96)
T ss_pred HHHHHHcCcccCcHHHHHHHHHHHHHHhhcCC--CHHHHHHHHhhhCCHHhcc
Confidence 34445555 899999999999999989987 8899987777777766543
No 107
>PF13041 PPR_2: PPR repeat family
Probab=31.00 E-value=81 Score=20.54 Aligned_cols=42 Identities=21% Similarity=0.396 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhhCCCCCChhHHHHHHH
Q 024660 36 MYKSISARYVAAQRYSEALDLLHAGACLQLKNNQLTCGAELAVSFVEALVKGKVAYDNENLDRVRK 101 (264)
Q Consensus 36 ~~RTl~~Ry~~~kk~~eAieLL~~GA~~ll~~~Q~~sa~DL~~llvevl~~~~~~~~~~~~~rl~~ 101 (264)
+|-|+..=|.+++++++|.+++. -..+.++++|....+-++.
T Consensus 5 ~yn~li~~~~~~~~~~~a~~l~~------------------------~M~~~g~~P~~~Ty~~li~ 46 (50)
T PF13041_consen 5 TYNTLISGYCKAGKFEEALKLFK------------------------EMKKRGIKPDSYTYNILIN 46 (50)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHH------------------------HHHHcCCCCCHHHHHHHHH
Confidence 34555555555566555555543 3356667777666655544
No 108
>PF14227 UBN2_2: gag-polypeptide of LTR copia-type
Probab=30.96 E-value=2.3e+02 Score=21.87 Aligned_cols=69 Identities=22% Similarity=0.316 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHcCCcccHHHHH------HHHHHHHhhCCCCCChhHHHHHHHHHHhC
Q 024660 33 AQQMYKSISARYVAAQRYSEALDLLHAGACLQLKNNQLTCGAELA------VSFVEALVKGKVAYDNENLDRVRKIYELF 106 (264)
Q Consensus 33 AhQ~~RTl~~Ry~~~kk~~eAieLL~~GA~~ll~~~Q~~sa~DL~------~llvevl~~~~~~~~~~~~~rl~~l~~~~ 106 (264)
|.+|..++-..|........ +-++. .|... ++..+.++. .-++.-+...|++++++ ..+.-|+..+
T Consensus 4 a~~~W~~L~~~y~~~~~~~~-~~l~~----kl~~~-k~~~~~~v~~hi~~~~~l~~~L~~~g~~i~d~--~~~~~lL~sL 75 (119)
T PF14227_consen 4 AKEMWDKLKKKYEKKSFANK-IYLLR----KLYSL-KMDEGGSVRDHINEFRSLVNQLKSLGVPIDDE--DKVIILLSSL 75 (119)
T ss_pred HHHHHHHHHHHHcCCCHHHH-HHHHH----HHHHh-HhccchhHHHHHHHHHHHHHhhccccccchHH--HHHHHHHHcC
Confidence 66777777777755543221 11111 12121 222233322 23345567778888876 5577788888
Q ss_pred CCC
Q 024660 107 PQI 109 (264)
Q Consensus 107 p~~ 109 (264)
|++
T Consensus 76 P~s 78 (119)
T PF14227_consen 76 PPS 78 (119)
T ss_pred CHh
Confidence 743
No 109
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=30.79 E-value=6.1e+02 Score=27.69 Aligned_cols=95 Identities=13% Similarity=0.164 Sum_probs=66.2
Q ss_pred HHHHHHHHHH-------hccCChhHHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHcCCcccHHHHHH------HHH
Q 024660 15 QENIDKLEKI-------VNEGNFYGAQQMYKSISARYVAAQRYSEALDLLHAGACLQLKNNQLTCGAELAV------SFV 81 (264)
Q Consensus 15 ~r~l~rl~~~-------i~~G~~YEAhQ~~RTl~~Ry~~~kk~~eAieLL~~GA~~ll~~~Q~~sa~DL~~------llv 81 (264)
+-+|++|+.+ =+++++|--|++++..-+.-....-..+.-++-...|.-+.++|-...|+|=++ +..
T Consensus 301 ~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~~~~~~~~~lH~~Aa~w~~~~g~~~eAI~hAlaA~d~~~aa 380 (894)
T COG2909 301 QAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQRELAARLKELHRAAAEWFAEHGLPSEAIDHALAAGDPEMAA 380 (894)
T ss_pred HHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhhccccCCchhHHHHHHHHHHHhCCChHHHHHHHHhCCCHHHHH
Confidence 3566666665 378999999999999988877776677888888888888888888777776553 222
Q ss_pred HHHhhCCCCC-ChhHHHHHHHHHHhCCCC
Q 024660 82 EALVKGKVAY-DNENLDRVRKIYELFPQI 109 (264)
Q Consensus 82 evl~~~~~~~-~~~~~~rl~~l~~~~p~~ 109 (264)
+.+++.+... +...+.-|..+...+|.+
T Consensus 381 ~lle~~~~~L~~~~~lsll~~~~~~lP~~ 409 (894)
T COG2909 381 DLLEQLEWQLFNGSELSLLLAWLKALPAE 409 (894)
T ss_pred HHHHhhhhhhhcccchHHHHHHHHhCCHH
Confidence 3344443332 234556666777777754
No 110
>TIGR01641 phageSPP1_gp7 phage putative head morphogenesis protein, SPP1 gp7 family. This model describes a region of about 110 amino acids found exclusively in phage-related proteins, internally or toward the C-terminus. One member, gp7 of phage SPP1, appears involved in head morphogenesis.
Probab=30.58 E-value=1.4e+02 Score=23.00 Aligned_cols=42 Identities=17% Similarity=0.097 Sum_probs=35.1
Q ss_pred chHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhhhCHHHHHH
Q 024660 13 PAQENIDKLEKIVNEGNFYGAQQMYKSISARYVAAQRYSEALD 55 (264)
Q Consensus 13 ~~~r~l~rl~~~i~~G~~YEAhQ~~RTl~~Ry~~~kk~~eAie 55 (264)
+.+.+.++|++.++ ...|.|..++||-.+|-..+++++...+
T Consensus 14 ~~~~iak~i~~~~~-~~~~~A~~iarTe~~~a~~~~~~~~~~~ 55 (108)
T TIGR01641 14 GPNELAKRLRKELG-VQKHYAQRLARTETARIYNQTKLERYKK 55 (108)
T ss_pred CHHHHHHHHHHHHC-ccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888888884 5799999999999999999988776544
No 111
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=29.98 E-value=96 Score=17.87 Aligned_cols=23 Identities=22% Similarity=0.291 Sum_probs=16.8
Q ss_pred HHHHHHHHHHhhhCHHHHHHHHH
Q 024660 36 MYKSISARYVAAQRYSEALDLLH 58 (264)
Q Consensus 36 ~~RTl~~Ry~~~kk~~eAieLL~ 58 (264)
+|.++..=+.+.++++.|.+++.
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~ 25 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFD 25 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHH
Confidence 56677777777788877777665
No 112
>PRK09646 RNA polymerase sigma factor SigK; Reviewed
Probab=29.94 E-value=2.3e+02 Score=23.82 Aligned_cols=70 Identities=14% Similarity=0.108 Sum_probs=40.7
Q ss_pred CCCCCCCCCCCCchHHHHHHHHHHhccCC---hhHHHHHHHHHHHHHHhh--hCHHHHHHHHHHHHHHHHHc-CCcc
Q 024660 1 MSRQRPKRTALPPAQENIDKLEKIVNEGN---FYGAQQMYKSISARYVAA--QRYSEALDLLHAGACLQLKN-NQLT 71 (264)
Q Consensus 1 ~~~~~~~~~~~~~~~r~l~rl~~~i~~G~---~YEAhQ~~RTl~~Ry~~~--kk~~eAieLL~~GA~~ll~~-~Q~~ 71 (264)
|..+.++.| .|.-+...+.+-..+.+|+ |=+--+.|+....|+..+ +.+++|-|+++++-..+.++ ..+.
T Consensus 1 ~~~~~~~~~-~~~~~~~~~~li~~~~~g~~~a~~~l~~~y~~~l~~~~~~~~~~~~dAeDivQe~fi~l~~~~~~~~ 76 (194)
T PRK09646 1 MKAAVPMTG-PPAESPDLDALLRRVARGDQDAFAELYDRTSSRVYGLVRRVLRDPGYSEETTQEVYLEVWRTASRFD 76 (194)
T ss_pred CcccccccC-CCCCcccHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhhhhcC
Confidence 667777777 2323333344444444454 222333344444444333 68899999999999988876 4443
No 113
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=29.81 E-value=2.4e+02 Score=21.12 Aligned_cols=67 Identities=10% Similarity=-0.016 Sum_probs=45.7
Q ss_pred HHHHhccCChhHHHHHHHHHHHHHHhhhCHH----HHHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhhCC
Q 024660 21 LEKIVNEGNFYGAQQMYKSISARYVAAQRYS----EALDLLHAGACLQLKNNQLTCGAELAVSFVEALVKGK 88 (264)
Q Consensus 21 l~~~i~~G~~YEAhQ~~RTl~~Ry~~~kk~~----eAieLL~~GA~~ll~~~Q~~sa~DL~~llvevl~~~~ 88 (264)
.-..+..|||++|.--++-.+=+...+..-. -+.. +..-|......|+...|.+...--|.+-.+.+
T Consensus 5 ~~~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~a-ll~lA~~~~~~G~~~~A~~~l~eAi~~Are~~ 75 (94)
T PF12862_consen 5 YLNALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYA-LLNLAELHRRFGHYEEALQALEEAIRLARENG 75 (94)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHH-HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHC
Confidence 4467888999999877777776665554322 2233 33355566777888888888877777777775
No 114
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=29.52 E-value=1.5e+02 Score=24.97 Aligned_cols=47 Identities=21% Similarity=0.354 Sum_probs=30.4
Q ss_pred CchHHHHHHHHHHhccCChhHHHHHHHH----------------------HHHHHHhhhCHHHHHHHHH
Q 024660 12 PPAQENIDKLEKIVNEGNFYGAQQMYKS----------------------ISARYVAAQRYSEALDLLH 58 (264)
Q Consensus 12 ~~~~r~l~rl~~~i~~G~~YEAhQ~~RT----------------------l~~Ry~~~kk~~eAieLL~ 58 (264)
+...+.+...++.++.|+.=+|.|.++. .+.+++.+|||.||-..|.
T Consensus 73 ~~~~~ai~~a~~~l~~g~~~~A~~~L~~~~~ei~~~~~~lPL~~~~~av~~A~~ll~~~k~~eA~~aL~ 141 (155)
T PF10938_consen 73 PEKKAAIKTANELLKKGDKQAAREILKLAGSEIDITTALLPLAQTPAAVKQAAALLDEGKYYEANAALK 141 (155)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHTT-EEEEEEEEEEHHHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHhcccceeeeeeCCHHhhHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 4556677777778888888888877774 3455666666666666554
No 115
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=29.48 E-value=2.4e+02 Score=23.46 Aligned_cols=65 Identities=12% Similarity=0.039 Sum_probs=39.6
Q ss_pred chHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHcCCcccHHHHHHHHHH
Q 024660 13 PAQENIDKLEKIVNEGNFYGAQQMYKSISARYVAAQRYSEALDLLHAGACLQLKNNQLTCGAELAVSFVE 82 (264)
Q Consensus 13 ~~~r~l~rl~~~i~~G~~YEAhQ~~RTl~~Ry~~~kk~~eAieLL~~GA~~ll~~~Q~~sa~DL~~llve 82 (264)
|.++++++.++.+++|+|=.|-++.--++. ..-+..+|.+|.-+....|-. |..++.-=..|+-.
T Consensus 69 G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~---adp~n~~ar~l~A~al~~lg~--~~~~~~~Rn~yL~~ 133 (141)
T PF14863_consen 69 GADKVLERAQAALAAGDYQWAAELLDHLVF---ADPDNEEARQLKADALEQLGY--QSENANWRNYYLTG 133 (141)
T ss_dssp CHHHHHHHHHHHHHCT-HHHHHHHHHHHHH---H-TT-HHHHHHHHHHHHHHHH--H-SSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHHHH--hccCHHHHHHHHHH
Confidence 799999999999999998777776655554 334555777777664444332 22344444444433
No 116
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=29.19 E-value=2.9e+02 Score=21.81 Aligned_cols=16 Identities=44% Similarity=0.609 Sum_probs=8.7
Q ss_pred HHHhhhCHHHHHHHHH
Q 024660 43 RYVAAQRYSEALDLLH 58 (264)
Q Consensus 43 Ry~~~kk~~eAieLL~ 58 (264)
.+...+++++|+.++.
T Consensus 71 ~~~~~~~~~~a~~~~~ 86 (146)
T PF03704_consen 71 ALLEAGDYEEALRLLQ 86 (146)
T ss_dssp HHHHTT-HHHHHHHHH
T ss_pred HHHhccCHHHHHHHHH
Confidence 3344666666666655
No 117
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=28.84 E-value=4.4e+02 Score=23.79 Aligned_cols=28 Identities=7% Similarity=-0.122 Sum_probs=23.5
Q ss_pred CCHHHHHHHHHHHHhcCCCcChHhhhhhhhc
Q 024660 158 GSPELHVMLAEYLYSESPELDMARVSFHFVR 188 (264)
Q Consensus 158 Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~ 188 (264)
.++..|..+|.+|+..+ ++.+|..++-.
T Consensus 146 ~~~~~~~~la~i~~~~g---~~~eA~~~l~~ 173 (355)
T cd05804 146 DDAWAVHAVAHVLEMQG---RFKEGIAFMES 173 (355)
T ss_pred CCcHHHHHHHHHHHHcC---CHHHHHHHHHh
Confidence 45788999999999999 89998888754
No 118
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=28.61 E-value=3e+02 Score=21.89 Aligned_cols=28 Identities=7% Similarity=0.081 Sum_probs=24.3
Q ss_pred CCCHHHHHHHHHHHHhcCCCcChHhhhhhhh
Q 024660 157 TGSPELHVMLAEYLYSESPELDMARVSFHFV 187 (264)
Q Consensus 157 ~Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl 187 (264)
.-.|..+.+.|.+|...| ++.+|+..|-
T Consensus 115 ~~~~~~~~~~Gdi~~~~g---~~~~A~~~y~ 142 (145)
T PF09976_consen 115 AFKALAAELLGDIYLAQG---DYDEARAAYQ 142 (145)
T ss_pred chHHHHHHHHHHHHHHCC---CHHHHHHHHH
Confidence 346789999999999999 9999998874
No 119
>PRK12370 invasion protein regulator; Provisional
Probab=28.05 E-value=6.2e+02 Score=25.29 Aligned_cols=43 Identities=16% Similarity=0.073 Sum_probs=31.9
Q ss_pred HHHHHhhhhcC-CCCCCCHHHHHHHHHHHHhcCCCcChHhhhhhhhc
Q 024660 143 KAAIKWSIEFG-APKTGSPELHVMLAEYLYSESPELDMARVSFHFVR 188 (264)
Q Consensus 143 ~~ai~WS~~~g-~~~~Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~ 188 (264)
+.|+.|-.+.- ..+-++|..|..+|.+|...| ++.+|+.++-.
T Consensus 423 eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G---~~~eA~~~~~~ 466 (553)
T PRK12370 423 DDAIRLGDELRSQHLQDNPILLSMQVMFLSLKG---KHELARKLTKE 466 (553)
T ss_pred HHHHHHHHHHHHhccccCHHHHHHHHHHHHhCC---CHHHHHHHHHH
Confidence 56677755431 123578999999999999899 99999988754
No 120
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=28.01 E-value=1e+02 Score=31.12 Aligned_cols=69 Identities=20% Similarity=0.259 Sum_probs=26.9
Q ss_pred HHhccCChhHHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhhCCCCCChhHHHH
Q 024660 23 KIVNEGNFYGAQQMYKSISARYVAAQRYSEALDLLHAGACLQLKNNQLTCGAELAVSFVEALVKGKVAYDNENLDR 98 (264)
Q Consensus 23 ~~i~~G~~YEAhQ~~RTl~~Ry~~~kk~~eAieLL~~GA~~ll~~~Q~~sa~DL~~llvevl~~~~~~~~~~~~~r 98 (264)
-.-+-|=--+|..++|+...|..++|+|-+|+.-.- +.|.......++..+++.+...+.+.+++.++.
T Consensus 414 iC~~~~L~~~a~~I~~~~~~~~~~~~~~g~AL~~~~-------ra~d~~~v~~i~~~ll~~~~~~~~~~~~~ll~~ 482 (566)
T PF07575_consen 414 ICAELGLEDVAREICKILGQRLLKEGRYGEALSWFI-------RAGDYSLVTRIADRLLEEYCNNGEPLDDDLLDN 482 (566)
T ss_dssp HHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------------------
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH-------HCCCHHHHHHHHHHHHHHHhcCCCcccHHHHHH
Confidence 333445556788999999999999999988887554 677777888888888877777776666544443
No 121
>PRK04841 transcriptional regulator MalT; Provisional
Probab=27.76 E-value=7.2e+02 Score=25.96 Aligned_cols=44 Identities=9% Similarity=0.087 Sum_probs=25.8
Q ss_pred hHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHhcCCCcChHhhhhhhh
Q 024660 139 SSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDMARVSFHFV 187 (264)
Q Consensus 139 ~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl 187 (264)
...+.+++......+ +...+..+..+|.++...| ++..|..++-
T Consensus 593 ~~~~~~al~~~~~~~--~~~~~~~~~~la~~~~~~G---~~~~A~~~l~ 636 (903)
T PRK04841 593 EQCARKGLEVLSNYQ--PQQQLQCLAMLAKISLARG---DLDNARRYLN 636 (903)
T ss_pred HHHHHHhHHhhhccC--chHHHHHHHHHHHHHHHcC---CHHHHHHHHH
Confidence 444555555443222 2234555666788888888 8777766653
No 122
>smart00667 LisH Lissencephaly type-1-like homology motif. Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.
Probab=27.18 E-value=1.1e+02 Score=17.79 Aligned_cols=21 Identities=24% Similarity=0.363 Sum_probs=15.7
Q ss_pred HHHHHHHHHhcCChhHHHHHH
Q 024660 215 VARAILMYLSLGNMKDANYIM 235 (264)
Q Consensus 215 iaRaVL~~L~l~n~~~A~~~~ 235 (264)
+-|.|++||.-.....+...|
T Consensus 6 l~~lI~~yL~~~g~~~ta~~l 26 (34)
T smart00667 6 LNRLILEYLLRNGYEETAETL 26 (34)
T ss_pred HHHHHHHHHHHcCHHHHHHHH
Confidence 678999999977766665444
No 123
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=26.72 E-value=3.4e+02 Score=21.85 Aligned_cols=91 Identities=16% Similarity=0.133 Sum_probs=55.0
Q ss_pred hHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHhcCCCcChHhhhhhhhc--CCCh---H---HHHHHHHH---------
Q 024660 139 SSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDMARVSFHFVR--GNNP---E---KFASTIVN--------- 201 (264)
Q Consensus 139 ~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~--~~d~---~---~~a~~L~e--------- 201 (264)
+..+++||.+.-+ -+...|..++..| ++.+|..+|-. .-+| . .+|.++..
T Consensus 13 ~~~~~~al~~~p~----------~~~~~g~~~~~~g---~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~ 79 (144)
T PRK15359 13 EDILKQLLSVDPE----------TVYASGYASWQEG---DYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAIN 79 (144)
T ss_pred HHHHHHHHHcCHH----------HHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHH
Confidence 4566666666432 2445688888888 88888777764 2222 2 22222221
Q ss_pred HHh---hcCCCchHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhh
Q 024660 202 FMG---KCYPGEDDLAVARAILMYLSLGNMKDANYIMDEVKKQVE 243 (264)
Q Consensus 202 w~~---~~~~~e~dlfiaRaVL~~L~l~n~~~A~~~~~~f~~~~~ 243 (264)
++. ...|...+.+.-+++ .+..+|+...|...++.-++.-|
T Consensus 80 ~y~~Al~l~p~~~~a~~~lg~-~l~~~g~~~eAi~~~~~Al~~~p 123 (144)
T PRK15359 80 FYGHALMLDASHPEPVYQTGV-CLKMMGEPGLAREAFQTAIKMSY 123 (144)
T ss_pred HHHHHHhcCCCCcHHHHHHHH-HHHHcCCHHHHHHHHHHHHHhCC
Confidence 111 234666665555554 56788999999999988876443
No 124
>PLN03218 maturation of RBCL 1; Provisional
Probab=25.83 E-value=9.5e+02 Score=26.70 Aligned_cols=89 Identities=9% Similarity=0.153 Sum_probs=49.8
Q ss_pred chHHHHHHHHHHhccCChhHHHHHHHHHHHH----------------HHhhhCHHHHHHHHHHH-----------HHHHH
Q 024660 13 PAQENIDKLEKIVNEGNFYGAQQMYKSISAR----------------YVAAQRYSEALDLLHAG-----------ACLQL 65 (264)
Q Consensus 13 ~~~r~l~rl~~~i~~G~~YEAhQ~~RTl~~R----------------y~~~kk~~eAieLL~~G-----------A~~ll 65 (264)
.+...+..+...+..|++-+|.+++...-.| +.+.+...+|.++...- ...+.
T Consensus 369 ~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~ 448 (1060)
T PLN03218 369 KSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCA 448 (1060)
T ss_pred CchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 3445666666667788888888877654332 34556677776654221 11223
Q ss_pred HcCCcccHHHHHHHHHHHHhhCCCCCChhHHHHHHHHHHh
Q 024660 66 KNNQLTCGAELAVSFVEALVKGKVAYDNENLDRVRKIYEL 105 (264)
Q Consensus 66 ~~~Q~~sa~DL~~llvevl~~~~~~~~~~~~~rl~~l~~~ 105 (264)
+.|+...|-++ .+-+.+.++++|....+.|+..+..
T Consensus 449 k~g~~e~A~~l----f~~M~~~Gl~pD~~tynsLI~~y~k 484 (1060)
T PLN03218 449 SSQDIDGALRV----LRLVQEAGLKADCKLYTTLISTCAK 484 (1060)
T ss_pred hCcCHHHHHHH----HHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 44555444433 3344556677776666666665554
No 125
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=25.54 E-value=3.6e+02 Score=21.71 Aligned_cols=40 Identities=15% Similarity=0.071 Sum_probs=31.4
Q ss_pred hHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHhcCCCcChHhhhhhhhc
Q 024660 139 SSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDMARVSFHFVR 188 (264)
Q Consensus 139 ~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~ 188 (264)
..+.++|+.= --++|+.|..+|.++...| ++.+|..+|-.
T Consensus 78 ~~~y~~Al~l-------~p~~~~a~~~lg~~l~~~g---~~~eAi~~~~~ 117 (144)
T PRK15359 78 INFYGHALML-------DASHPEPVYQTGVCLKMMG---EPGLAREAFQT 117 (144)
T ss_pred HHHHHHHHhc-------CCCCcHHHHHHHHHHHHcC---CHHHHHHHHHH
Confidence 5555555541 2388999999999999999 99999988864
No 126
>PF12213 Dpoe2NT: DNA polymerases epsilon N terminal; InterPro: IPR024639 This domain is found in the N-terminal of DNA polymerase epsilon subunit B proteins. It contains a single completely conserved phenylalanine residue that may be functionally important. It forms a primarily alpha helical structure in which four helices are arranged in two hairpins with connecting loops containing beta strands which form a short parallel sheet. DNA polymerase epsilon is required in DNA replication for synthesis of the leading strand. The N-terminal domain has close structural relation to AAA+ protein C-terminal domains [].; PDB: 2V6Z_M.
Probab=25.22 E-value=1.6e+02 Score=21.91 Aligned_cols=41 Identities=17% Similarity=0.126 Sum_probs=26.7
Q ss_pred cccHHHHHHHHHHHHhhCCCCCChhHHHHHHHHHHhCCCCC
Q 024660 70 LTCGAELAVSFVEALVKGKVAYDNENLDRVRKIYELFPQIP 110 (264)
Q Consensus 70 ~~sa~DL~~llvevl~~~~~~~~~~~~~rl~~l~~~~p~~~ 110 (264)
+..-.|-..|+++.+...+-.--++|+++|++.+..-|-++
T Consensus 18 l~Lr~eA~~~l~~~l~~~~~~e~e~~l~~Ii~~v~kq~Lss 58 (73)
T PF12213_consen 18 LSLRSEASKYLAEQLQSLSEEEREDWLDKIIDAVQKQPLSS 58 (73)
T ss_dssp -EE-HHHHHHHHHHTTTS-TTTHHHHHHHHHHHHTTS--SS
T ss_pred ceecHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhcCCCCC
Confidence 45667888899998866643322568899999888776554
No 127
>PF09577 Spore_YpjB: Sporulation protein YpjB (SpoYpjB); InterPro: IPR014231 Proteins in thie entry, typified by YpjB, are restricted to a subset of the endospore-forming bacteria which includes Bacillus species, but not species. In Bacillus subtilis, ypjB was found to be part of the sigma-E regulon []. Sigma-E is a sporulation sigma factor that regulates expression in the mother cell compartment. Null mutants of ypjB show a sporulation defect, but this gene is not, however, a part of the endospore formation minimal gene set.
Probab=25.14 E-value=4.5e+02 Score=23.89 Aligned_cols=67 Identities=15% Similarity=0.092 Sum_probs=39.3
Q ss_pred HHHHHhhhCHHHHHHHHHHHHHHHHHcCC---cccHHHHHH------HHHHHHhhCCCCCChh--HHHHHHHHHHhCC
Q 024660 41 SARYVAAQRYSEALDLLHAGACLQLKNNQ---LTCGAELAV------SFVEALVKGKVAYDNE--NLDRVRKIYELFP 107 (264)
Q Consensus 41 ~~Ry~~~kk~~eAieLL~~GA~~ll~~~Q---~~sa~DL~~------llvevl~~~~~~~~~~--~~~rl~~l~~~~p 107 (264)
+.+++++++|++|..+|..-+..|....- .-+..+|=. -..++++..+++.++. ...++.=.+.++.
T Consensus 12 ~lqlvk~~~yeeA~q~l~~fs~~f~~~~~~~~~~t~e~iralT~t~~~a~~al~~~~~~~~e~~~~at~~RLavDAl~ 89 (232)
T PF09577_consen 12 ALQLVKQGKYEEAKQLLEYFSEQFTSVDFKGRPLTMEEIRALTETIEEAKKALTSVSMSEEEKIRAATQFRLAVDALT 89 (232)
T ss_pred HHHHHHcccHHHHHHHHHHHHHHHhhccccccccCHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhc
Confidence 45788999999999999999988887532 233333322 2234444444444431 2345555555553
No 128
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=24.24 E-value=3.8e+02 Score=21.49 Aligned_cols=80 Identities=14% Similarity=0.099 Sum_probs=48.4
Q ss_pred hHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHhcCCCcChHhhhhhhhcCCChHHHHHHHHHHHhhcCCCchHHHHHHH
Q 024660 139 SSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDMARVSFHFVRGNNPEKFASTIVNFMGKCYPGEDDLAVARA 218 (264)
Q Consensus 139 ~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~~~d~~~~a~~L~ew~~~~~~~e~dlfiaRa 218 (264)
.++..+++... ...+.+.....+|.+++..+ ++.+|..+|-..-. -.|...+.+...+
T Consensus 119 ~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~--------------~~~~~~~~~~~la 176 (234)
T TIGR02521 119 MQQFEQAIEDP-----LYPQPARSLENAGLCALKAG---DFDKAEKYLTRALQ--------------IDPQRPESLLELA 176 (234)
T ss_pred HHHHHHHHhcc-----ccccchHHHHHHHHHHHHcC---CHHHHHHHHHHHHH--------------hCcCChHHHHHHH
Confidence 45555555421 12356778888999999999 99988888743211 0122233333333
Q ss_pred HHHHHhcCChhHHHHHHHHHHHH
Q 024660 219 ILMYLSLGNMKDANYIMDEVKKQ 241 (264)
Q Consensus 219 VL~~L~l~n~~~A~~~~~~f~~~ 241 (264)
.-+...++...|...++.+.+.
T Consensus 177 -~~~~~~~~~~~A~~~~~~~~~~ 198 (234)
T TIGR02521 177 -ELYYLRGQYKDARAYLERYQQT 198 (234)
T ss_pred -HHHHHcCCHHHHHHHHHHHHHh
Confidence 3345577888888877777654
No 129
>PRK11189 lipoprotein NlpI; Provisional
Probab=24.11 E-value=4.2e+02 Score=24.05 Aligned_cols=84 Identities=12% Similarity=0.005 Sum_probs=54.1
Q ss_pred CCCCHHHHHHHHHHHHhcCCCcChHhhhhhhhcC--CC---hHHH---HHHHH---------HHH---hhcCCCchHHHH
Q 024660 156 KTGSPELHVMLAEYLYSESPELDMARVSFHFVRG--NN---PEKF---ASTIV---------NFM---GKCYPGEDDLAV 215 (264)
Q Consensus 156 ~~Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~~--~d---~~~~---a~~L~---------ew~---~~~~~~e~dlfi 215 (264)
+.+.+..|...|.+|...| ++.+|...|-.. -+ +..+ +..+. +++ -+-.|.-...+.
T Consensus 60 ~~~~a~~~~~~g~~~~~~g---~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~ 136 (296)
T PRK11189 60 DEERAQLHYERGVLYDSLG---LRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYL 136 (296)
T ss_pred cHhhHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 4577888999999999999 888777666532 12 2211 11110 111 123456666677
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHHhh
Q 024660 216 ARAILMYLSLGNMKDANYIMDEVKKQVE 243 (264)
Q Consensus 216 aRaVL~~L~l~n~~~A~~~~~~f~~~~~ 243 (264)
-|++.. ...|+...|...++.+.+..|
T Consensus 137 ~lg~~l-~~~g~~~eA~~~~~~al~~~P 163 (296)
T PRK11189 137 NRGIAL-YYGGRYELAQDDLLAFYQDDP 163 (296)
T ss_pred HHHHHH-HHCCCHHHHHHHHHHHHHhCC
Confidence 777654 567999999999999987654
No 130
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.08 E-value=2.7e+02 Score=29.35 Aligned_cols=158 Identities=15% Similarity=0.094 Sum_probs=96.8
Q ss_pred HHHHhccCChhHHHH-------HHHHHHHHHHhh-hCHHHHHHHHHHHHHH---HHHcCCcccHHHHHHHHHHHHhhCCC
Q 024660 21 LEKIVNEGNFYGAQQ-------MYKSISARYVAA-QRYSEALDLLHAGACL---QLKNNQLTCGAELAVSFVEALVKGKV 89 (264)
Q Consensus 21 l~~~i~~G~~YEAhQ-------~~RTl~~Ry~~~-kk~~eAieLL~~GA~~---ll~~~Q~~sa~DL~~llvevl~~~~~ 89 (264)
.+..+=.|+|=.|.- --||-+.++..+ +=+++|+++.-+--.. .++.|+...|-||+. +++
T Consensus 593 yqt~vmrrd~~~a~~vLp~I~k~~rt~va~Fle~~g~~e~AL~~s~D~d~rFelal~lgrl~iA~~la~-------e~~- 664 (794)
T KOG0276|consen 593 YQTLVLRRDLEVADGVLPTIPKEIRTKVAHFLESQGMKEQALELSTDPDQRFELALKLGRLDIAFDLAV-------EAN- 664 (794)
T ss_pred HHHHhhhccccccccccccCchhhhhhHHhHhhhccchHhhhhcCCChhhhhhhhhhcCcHHHHHHHHH-------hhc-
Confidence 345555566555543 257777777654 5567899988765544 477889988888862 222
Q ss_pred CCChhHHHHHHHHHHhCCCCCCCCCCCCCchHHHHHHHHhhhhhhhhhhhHHHHHHHHhhhhc-CCCCCCCHHHHHHHHH
Q 024660 90 AYDNENLDRVRKIYELFPQIPVPHNLEDDDDLHELTEALGAAKLRVEGCSSFLKAAIKWSIEF-GAPKTGSPELHVMLAE 168 (264)
Q Consensus 90 ~~~~~~~~rl~~l~~~~p~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~~~~fl~~ai~WS~~~-g~~~~Gdp~LH~~la~ 168 (264)
++.--.+|.+..- ... .+ +.+ ..++.+|-.|+.-. -....|+.+.-..+|.
T Consensus 665 --s~~Kw~~Lg~~al---~~~---~l-----------------~lA---~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~ 716 (794)
T KOG0276|consen 665 --SEVKWRQLGDAAL---SAG---EL-----------------PLA---SECFLRARDLGSLLLLYTSSGNAEGLAVLAS 716 (794)
T ss_pred --chHHHHHHHHHHh---hcc---cc-----------------hhH---HHHHHhhcchhhhhhhhhhcCChhHHHHHHH
Confidence 1111133333322 111 11 112 34466666676532 1124799998889999
Q ss_pred HHHhcCCCcChHhhhhhhhcCCChHHHHHHHHHHHhhcCCCchHHHHHHHHHH
Q 024660 169 YLYSESPELDMARVSFHFVRGNNPEKFASTIVNFMGKCYPGEDDLAVARAILM 221 (264)
Q Consensus 169 ~~~~e~~~~~~~~A~~Hfl~~~d~~~~a~~L~ew~~~~~~~e~dlfiaRaVL~ 221 (264)
.--++| ....|-.-+.+.++.+.|.++|++= +--.|.. |.+|.-++
T Consensus 717 ~~~~~g---~~N~AF~~~~l~g~~~~C~~lLi~t---~r~peAa-l~ArtYlp 762 (794)
T KOG0276|consen 717 LAKKQG---KNNLAFLAYFLSGDYEECLELLIST---QRLPEAA-LFARTYLP 762 (794)
T ss_pred HHHhhc---ccchHHHHHHHcCCHHHHHHHHHhc---CcCcHHH-HHHhhhCh
Confidence 888888 7778888888999999999999853 2113444 55666555
No 131
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=23.85 E-value=4e+02 Score=22.60 Aligned_cols=23 Identities=13% Similarity=0.160 Sum_probs=12.5
Q ss_pred CChhHHHHHHHHHHHHHHhhhCH
Q 024660 28 GNFYGAQQMYKSISARYVAAQRY 50 (264)
Q Consensus 28 G~~YEAhQ~~RTl~~Ry~~~kk~ 50 (264)
|++-+|.+.+..+..++......
T Consensus 129 ~~~~~A~~~~~~~~~~~p~~~~~ 151 (235)
T TIGR03302 129 TAAREAFEAFQELIRRYPNSEYA 151 (235)
T ss_pred HHHHHHHHHHHHHHHHCCCChhH
Confidence 45555666666665555444333
No 132
>TIGR02878 spore_ypjB sporulation protein YpjB. Members of this protein, YpjB, family are restricted to a subset of endospore-forming bacteria, including Bacillus species but not CLostridium or some others. In Bacillus subtilis, ypjB was found to be part of the sigma-E regulon, where sigma-E is a sporulation sigma factor that regulates expression in the mother cell compartment. Null mutants of ypjB show a sporulation defect. This protein family is not, however, a part of the endospore formation minimal gene set.
Probab=23.61 E-value=1e+02 Score=28.11 Aligned_cols=28 Identities=18% Similarity=0.132 Sum_probs=23.8
Q ss_pred HHHHHhhhCHHHHHHHHHHHHHHHHHcC
Q 024660 41 SARYVAAQRYSEALDLLHAGACLQLKNN 68 (264)
Q Consensus 41 ~~Ry~~~kk~~eAieLL~~GA~~ll~~~ 68 (264)
+..++++++|+||.++|..-+..|+..+
T Consensus 12 ~LQl~K~~~yeeAkqvL~yFs~~F~~~~ 39 (233)
T TIGR02878 12 VLQLTKQARYEEAKQVLEYFSKQFVSAG 39 (233)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHhcc
Confidence 3467889999999999999999998864
No 133
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=22.50 E-value=5.8e+02 Score=23.08 Aligned_cols=94 Identities=14% Similarity=0.067 Sum_probs=56.0
Q ss_pred hccCChhHHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhhCCCCCChhHH-HHHHHHH
Q 024660 25 VNEGNFYGAQQMYKSISARYVAAQRYSEALDLLHAGACLQLKNNQLTCGAELAVSFVEALVKGKVAYDNENL-DRVRKIY 103 (264)
Q Consensus 25 i~~G~~YEAhQ~~RTl~~Ry~~~kk~~eAieLL~~GA~~ll~~~Q~~sa~DL~~llvevl~~~~~~~~~~~~-~rl~~l~ 103 (264)
+..++|=||..++-.-+..+.+.+++..|.||..-=...+-+.+-. ...+-..-+++++.... .++.++ .-+...+
T Consensus 1 v~~kky~eAidLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~-~~~~~~~rl~~l~~~~~--~~~p~r~~fi~~ai 77 (260)
T PF04190_consen 1 VKQKKYDEAIDLLYSGALILLKHGQYGSGADLALLLIEVYEKSEDP-VDEESIARLIELISLFP--PEEPERKKFIKAAI 77 (260)
T ss_dssp HHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT----SHHHHHHHHHHHHHS---TT-TTHHHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhCC--CCcchHHHHHHHHH
Confidence 3567899999999999999999999999999997666555554433 34445567778887764 332223 3334444
Q ss_pred HhCCCCCCCCCCCCCchHHHH
Q 024660 104 ELFPQIPVPHNLEDDDDLHEL 124 (264)
Q Consensus 104 ~~~p~~~~~r~l~~~~~~~~~ 124 (264)
+.-...+.+ ..++++|.+
T Consensus 78 ~WS~~~~~~---~Gdp~LH~~ 95 (260)
T PF04190_consen 78 KWSKFGSYK---FGDPELHHL 95 (260)
T ss_dssp HHHHTSS-T---T--HHHHHH
T ss_pred HHHccCCCC---CCCHHHHHH
Confidence 443222222 245666655
No 134
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.41 E-value=1e+03 Score=25.98 Aligned_cols=183 Identities=13% Similarity=0.183 Sum_probs=0.0
Q ss_pred ccCChhHHHHHHH---------HHHHHHHhhhCHHHHHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhhCCCCCChhHH
Q 024660 26 NEGNFYGAQQMYK---------SISARYVAAQRYSEALDLLHAGACLQLKNNQLTCGAELAVSFVEALVKGKVAYDNENL 96 (264)
Q Consensus 26 ~~G~~YEAhQ~~R---------Tl~~Ry~~~kk~~eAieLL~~GA~~ll~~~Q~~sa~DL~~llvevl~~~~~~~~~~~~ 96 (264)
..|||=||.|.|. -+..+|..+++..+....|. .|.+.|--.+ |=..+|+.+|.+-+ .+
T Consensus 380 ~Kgdf~~A~~qYI~tI~~le~s~Vi~kfLdaq~IknLt~YLe----~L~~~gla~~--dhttlLLncYiKlk------d~ 447 (933)
T KOG2114|consen 380 GKGDFDEATDQYIETIGFLEPSEVIKKFLDAQRIKNLTSYLE----ALHKKGLANS--DHTTLLLNCYIKLK------DV 447 (933)
T ss_pred hcCCHHHHHHHHHHHcccCChHHHHHHhcCHHHHHHHHHHHH----HHHHcccccc--hhHHHHHHHHHHhc------ch
Q ss_pred HHHHHHHHhCCCCCCCCCCCCCchHHHHHHHHhhhhhhhhhhhHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHhc-CC
Q 024660 97 DRVRKIYELFPQIPVPHNLEDDDDLHELTEALGAAKLRVEGCSSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSE-SP 175 (264)
Q Consensus 97 ~rl~~l~~~~p~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~~~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~~~~~e-~~ 175 (264)
++|.+.++.++ .+.| ...=+.-.--+-+ ..|++.|-.-.++.+ .|.++=.++.++ +
T Consensus 448 ~kL~efI~~~~-~g~~-~fd~e~al~Ilr~------------snyl~~a~~LA~k~~--------~he~vl~ille~~~- 504 (933)
T KOG2114|consen 448 EKLTEFISKCD-KGEW-FFDVETALEILRK------------SNYLDEAELLATKFK--------KHEWVLDILLEDLH- 504 (933)
T ss_pred HHHHHHHhcCC-Ccce-eeeHHHHHHHHHH------------hChHHHHHHHHHHhc--------cCHHHHHHHHHHhc-
Q ss_pred CcChHhhhhhh------------------hcCCChHHHHHHHHHHHh---hcCCCchHHHHH-HHHHHHHhcCChhHHHH
Q 024660 176 ELDMARVSFHF------------------VRGNNPEKFASTIVNFMG---KCYPGEDDLAVA-RAILMYLSLGNMKDANY 233 (264)
Q Consensus 176 ~~~~~~A~~Hf------------------l~~~d~~~~a~~L~ew~~---~~~~~e~dlfia-RaVL~~L~l~n~~~A~~ 233 (264)
+|.+|.+|+ ++-.+|+..-+++++..+ .+..++.+.-+- --+.-++..+|...-..
T Consensus 505 --ny~eAl~yi~slp~~e~l~~l~kyGk~Ll~h~P~~t~~ili~~~t~~~~~~~~~~~s~~~~~~~~i~if~~~~~~~~~ 582 (933)
T KOG2114|consen 505 --NYEEALRYISSLPISELLRTLNKYGKILLEHDPEETMKILIELITELNSQGKGKSLSNIPDSIEFIGIFSQNYQILLN 582 (933)
T ss_pred --CHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHhhcCCCCCCchhhcCccchhheeeeccCHHHHHH
Q ss_pred HHHHHHHHhhhh
Q 024660 234 IMDEVKKQVENK 245 (264)
Q Consensus 234 ~~~~f~~~~~~~ 245 (264)
+++.+.+..++.
T Consensus 583 Fl~~~~E~s~~s 594 (933)
T KOG2114|consen 583 FLESMSEISPDS 594 (933)
T ss_pred HHHHHHhcCCCc
No 135
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=22.34 E-value=8.6e+02 Score=25.00 Aligned_cols=22 Identities=9% Similarity=0.120 Sum_probs=15.9
Q ss_pred HHHHhcCChhHHHHHHHHHHHH
Q 024660 220 LMYLSLGNMKDANYIMDEVKKQ 241 (264)
Q Consensus 220 L~~L~l~n~~~A~~~~~~f~~~ 241 (264)
..|...|+...|...++...+.
T Consensus 326 ~~l~~~G~~~eA~~~l~~al~~ 347 (656)
T PRK15174 326 RALRQVGQYTAASDEFVQLARE 347 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHHh
Confidence 3456688888888887766654
No 136
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=22.30 E-value=2.8e+02 Score=19.24 Aligned_cols=54 Identities=19% Similarity=0.185 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHcCCccc-HHHHHHHHHHHHhhCC
Q 024660 35 QMYKSISARYVAAQRYSEALDLLHAGACLQLKNNQLTC-GAELAVSFVEALVKGK 88 (264)
Q Consensus 35 Q~~RTl~~Ry~~~kk~~eAieLL~~GA~~ll~~~Q~~s-a~DL~~llvevl~~~~ 88 (264)
..|..+..-|...|+|++|++.+.+.....-..|...- -+.....+-.++...|
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g 60 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLG 60 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcC
Confidence 45667777788888999999888887777444554321 2333344446666655
No 137
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=22.22 E-value=5e+02 Score=22.18 Aligned_cols=96 Identities=13% Similarity=0.046 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhhCCCCCChhHHHHHHHHHHhCCCCCCCCCCCCCchHHHHHHHHh
Q 024660 50 YSEALDLLHAGACLQLKNNQLTCGAELAVSFVEALVKGKVAYDNENLDRVRKIYELFPQIPVPHNLEDDDDLHELTEALG 129 (264)
Q Consensus 50 ~~eAieLL~~GA~~ll~~~Q~~sa~DL~~llvevl~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~l~~~~~~~~~~~~~~ 129 (264)
.++-++.+|.-|-.|.+.|++.-|..+--.++.. -|-+....-.|.-+...
T Consensus 31 ~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~-----Dp~~~~y~~gLG~~~Q~------------------------ 81 (157)
T PRK15363 31 VTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIY-----DAWSFDYWFRLGECCQA------------------------ 81 (157)
T ss_pred hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CcccHHHHHHHHHHHHH------------------------
Confidence 4788999999999999999998888876555321 11111222223333322
Q ss_pred hhhhhhhhhhHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHhcCCCcChHhhhhhh
Q 024660 130 AAKLRVEGCSSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDMARVSFHF 186 (264)
Q Consensus 130 ~~~~~~~~~~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~~~~~e~~~~~~~~A~~Hf 186 (264)
++.+-.+.-.++.... -.--||+-|.-+|.+++.-| +...|+.-|
T Consensus 82 --------~g~~~~AI~aY~~A~~-L~~ddp~~~~~ag~c~L~lG---~~~~A~~aF 126 (157)
T PRK15363 82 --------QKHWGEAIYAYGRAAQ-IKIDAPQAPWAAAECYLACD---NVCYAIKAL 126 (157)
T ss_pred --------HhhHHHHHHHHHHHHh-cCCCCchHHHHHHHHHHHcC---CHHHHHHHH
Confidence 1444444444555432 23489999999999999999 888887665
No 138
>PRK13241 ureA urease subunit gamma; Provisional
Probab=21.87 E-value=2.1e+02 Score=22.82 Aligned_cols=48 Identities=23% Similarity=0.227 Sum_probs=37.0
Q ss_pred HHHHHHhhh---CHHHHHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhhCCC
Q 024660 40 ISARYVAAQ---RYSEALDLLHAGACLQLKNNQLTCGAELAVSFVEALVKGKV 89 (264)
Q Consensus 40 l~~Ry~~~k---k~~eAieLL~~GA~~ll~~~Q~~sa~DL~~llvevl~~~~~ 89 (264)
++.|-..+| +|.||+.|+.+-.....+.| -+-+||+..--.+|....+
T Consensus 19 lA~~R~~rGlkLN~pEAvAlI~~~v~E~aRdG--~svaelm~~g~~~L~~ddV 69 (100)
T PRK13241 19 LAERRKARGLKLNYPEAVALISDALLEGARDG--KTVAELMSYGRTVLTRDDV 69 (100)
T ss_pred HHHHHHHcCcccCcHHHHHHHHHHHHHHhhCC--CCHHHHHHHhhhhCCHHhc
Confidence 344555555 89999999999999988888 4888888777777776654
No 139
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=21.83 E-value=1e+03 Score=25.54 Aligned_cols=158 Identities=18% Similarity=0.241 Sum_probs=91.3
Q ss_pred HHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHh---------hCCCCCCh----hHHHHHHHH
Q 024660 36 MYKSISARYVAAQRYSEALDLLHAGACLQLKNNQLTCGAELAVSFVEALV---------KGKVAYDN----ENLDRVRKI 102 (264)
Q Consensus 36 ~~RTl~~Ry~~~kk~~eAieLL~~GA~~ll~~~Q~~sa~DL~~llvevl~---------~~~~~~~~----~~~~rl~~l 102 (264)
+.-+++-=|+++|.++.|-|+.++|...-+..-.++---|--..+=|-.. +++-+-++ -.+.++-+|
T Consensus 250 Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~l 329 (835)
T KOG2047|consen 250 LWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESL 329 (835)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHH
Confidence 34466777899999999999999999877766554443332222211111 12211121 234677777
Q ss_pred HHhCCCCCC-------CCCCCCCchHHHHHHHHhhhhhhhhhhhHHHHHHHHhhhhcCCCCCCCH-HHHHHHHHHHHhcC
Q 024660 103 YELFPQIPV-------PHNLEDDDDLHELTEALGAAKLRVEGCSSFLKAAIKWSIEFGAPKTGSP-ELHVMLAEYLYSES 174 (264)
Q Consensus 103 ~~~~p~~~~-------~r~l~~~~~~~~~~~~~~~~~~~~~~~~~fl~~ai~WS~~~g~~~~Gdp-~LH~~la~~~~~e~ 174 (264)
++.-|--.. +.+.++=-..-.+.| ++..+.|..+-.++-+|.-+.. .|.| .|--.+|..||..+
T Consensus 330 m~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e-----~~~~~~i~tyteAv~~vdP~ka---~Gs~~~Lw~~faklYe~~~ 401 (835)
T KOG2047|consen 330 MNRRPLLLNSVLLRQNPHNVEEWHKRVKLYE-----GNAAEQINTYTEAVKTVDPKKA---VGSPGTLWVEFAKLYENNG 401 (835)
T ss_pred HhccchHHHHHHHhcCCccHHHHHhhhhhhc-----CChHHHHHHHHHHHHccCcccC---CCChhhHHHHHHHHHHhcC
Confidence 776542110 001100000001111 1112335666666666765432 4665 47788999999999
Q ss_pred CCcChHhhhhhhhcCCC-----hHHHHHHHHHHHh
Q 024660 175 PELDMARVSFHFVRGNN-----PEKFASTIVNFMG 204 (264)
Q Consensus 175 ~~~~~~~A~~Hfl~~~d-----~~~~a~~L~ew~~ 204 (264)
+...|+-=|=-++. .+.++++-++|..
T Consensus 402 ---~l~~aRvifeka~~V~y~~v~dLa~vw~~wae 433 (835)
T KOG2047|consen 402 ---DLDDARVIFEKATKVPYKTVEDLAEVWCAWAE 433 (835)
T ss_pred ---cHHHHHHHHHHhhcCCccchHHHHHHHHHHHH
Confidence 99999998888776 3578888888853
No 140
>TIGR00193 urease_gam urease, gamma subunit. Nomenclature for the various subunits of urease in Helicobacter differs from nomenclature in most other species.
Probab=21.56 E-value=2.2e+02 Score=22.73 Aligned_cols=48 Identities=21% Similarity=0.144 Sum_probs=37.3
Q ss_pred HHHHHHhhh---CHHHHHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhhCCC
Q 024660 40 ISARYVAAQ---RYSEALDLLHAGACLQLKNNQLTCGAELAVSFVEALVKGKV 89 (264)
Q Consensus 40 l~~Ry~~~k---k~~eAieLL~~GA~~ll~~~Q~~sa~DL~~llvevl~~~~~ 89 (264)
++.|..++| +|.||+.|+..-.....+.| -+-+||+..=-.+|....+
T Consensus 19 lA~rR~~rGlkLN~pEAvAlIs~~v~E~aRdG--~svaelm~~g~~~L~~~dV 69 (102)
T TIGR00193 19 LAKKRKARGVKLNYPEAVAYISAHIMEGARDG--KKVAELMQYGRTLLTPDDV 69 (102)
T ss_pred HHHHHHHcCcccCcHHHHHHHHHHHHHHhhcC--CcHHHHHHHHHhhCCHHhc
Confidence 455556665 89999999999999988888 4888888776677766644
No 141
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=21.33 E-value=7.2e+02 Score=23.66 Aligned_cols=27 Identities=19% Similarity=0.100 Sum_probs=22.8
Q ss_pred CCHHHHHHHHHHHHhcCCCcChHhhhhhhh
Q 024660 158 GSPELHVMLAEYLYSESPELDMARVSFHFV 187 (264)
Q Consensus 158 Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl 187 (264)
+|++.-..+|..+...| +++.|-.||+
T Consensus 234 dd~~aa~~lA~~~~~~g---~~e~Ale~Ll 260 (304)
T COG3118 234 DDVEAALALADQLHLVG---RNEAALEHLL 260 (304)
T ss_pred CCHHHHHHHHHHHHHcC---CHHHHHHHHH
Confidence 78888888888888888 8888888876
No 142
>PRK13242 ureA urease subunit gamma; Provisional
Probab=21.28 E-value=2.3e+02 Score=22.62 Aligned_cols=48 Identities=15% Similarity=0.053 Sum_probs=36.9
Q ss_pred HHHHHHhhh---CHHHHHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhhCCC
Q 024660 40 ISARYVAAQ---RYSEALDLLHAGACLQLKNNQLTCGAELAVSFVEALVKGKV 89 (264)
Q Consensus 40 l~~Ry~~~k---k~~eAieLL~~GA~~ll~~~Q~~sa~DL~~llvevl~~~~~ 89 (264)
++.|..++| +|.||+.|+.+-.....+.| -+-+||+..=-.+|....+
T Consensus 19 lA~~R~~rGlkLN~pEAvAlIs~~i~E~aRdG--~svaelm~~g~~vL~~~dV 69 (100)
T PRK13242 19 VALKRKNKGLKLNHPEAVAVLSAYVLDGAREG--KTVEEVMDGARSVLKADDV 69 (100)
T ss_pred HHHHHHHcCcccCcHHHHHHHHHHHHHHhhcC--CcHHHHHHHHHhhCCHHhc
Confidence 445555555 89999999999999988888 4888888776677766644
No 143
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=21.17 E-value=7.9e+02 Score=24.13 Aligned_cols=183 Identities=15% Similarity=0.152 Sum_probs=91.7
Q ss_pred HHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHcCCcccH--HHHH----HHHHHHHh----------------hCCC---C
Q 024660 36 MYKSISARYVAAQRYSEALDLLHAGACLQLKNNQLTCG--AELA----VSFVEALV----------------KGKV---A 90 (264)
Q Consensus 36 ~~RTl~~Ry~~~kk~~eAieLL~~GA~~ll~~~Q~~sa--~DL~----~llvevl~----------------~~~~---~ 90 (264)
+.|..|+|-+.....++-+++..+.-..|-++|.--.+ -|+. .-|.++|. ..+. .
T Consensus 66 ~~R~~fF~~I~~~~~~~d~~~~l~aL~~LT~~Grdi~~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~ 145 (464)
T PF11864_consen 66 LMRAEFFRDISDPSNDDDFDLRLEALIALTDNGRDIDFFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLD 145 (464)
T ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCcCchhcccchHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccc
Confidence 78999999998888888888888888888888874444 2222 22224440 0000 1
Q ss_pred CChhHHHHHHHHHHhCCCCCCCCCCCCCchHHHH-HHH-----HhhhhhhhhhhhHHHHHHHHhhhhcCCCCC-CCHHHH
Q 024660 91 YDNENLDRVRKIYELFPQIPVPHNLEDDDDLHEL-TEA-----LGAAKLRVEGCSSFLKAAIKWSIEFGAPKT-GSPELH 163 (264)
Q Consensus 91 ~~~~~~~rl~~l~~~~p~~~~~r~l~~~~~~~~~-~~~-----~~~~~~~~~~~~~fl~~ai~WS~~~g~~~~-Gdp~LH 163 (264)
.++..+..+.+++.-+=.-.. ...+++....+ +.. .+...+-.+.|-++++..|.++.= |. .=+.+=
T Consensus 146 ~~~~~l~~ll~~l~nviKfn~--~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~i----P~~sl~~~i 219 (464)
T PF11864_consen 146 NEESNLSDLLQFLVNVIKFNF--NYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDI----PSESLSPCI 219 (464)
T ss_pred chhhhHHHHHHHHHHHHhcCC--CCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcC----ChHHHHHHH
Confidence 122233333333221100000 11122333222 111 111223346788999999986642 22 222333
Q ss_pred HHHHHHHHhcCCCcChHhhhhhhhcCCChHHHHHHHHHHHhhcCC-CchHHHHHHHHHHHHh
Q 024660 164 VMLAEYLYSESPELDMARVSFHFVRGNNPEKFASTIVNFMGKCYP-GEDDLAVARAILMYLS 224 (264)
Q Consensus 164 ~~la~~~~~e~~~~~~~~A~~Hfl~~~d~~~~a~~L~ew~~~~~~-~e~dlfiaRaVL~~L~ 224 (264)
..|...+--..-....-++.++++.+..+......|.+.+....+ .-.+.-+.|+.+.+|-
T Consensus 220 ~vLCsi~~~~~l~~~~w~~m~nL~~S~~g~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~ 281 (464)
T PF11864_consen 220 EVLCSIVNSVSLCKPSWRTMRNLLKSHLGHSAIRTLCDILRSPDPQNKRDINVLRGAVFFLR 281 (464)
T ss_pred HHHhhHhcccccchhHHHHHHHHHcCccHHHHHHHHHHHHcccCccccccHHHHhhHHHHHH
Confidence 333333221110011224566777776677777777887743222 3446667776665554
No 144
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=21.08 E-value=8.4e+02 Score=24.37 Aligned_cols=35 Identities=11% Similarity=0.133 Sum_probs=25.5
Q ss_pred CchHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhh
Q 024660 209 GEDDLAVARAILMYLSLGNMKDANYIMDEVKKQVE 243 (264)
Q Consensus 209 ~e~dlfiaRaVL~~L~l~n~~~A~~~~~~f~~~~~ 243 (264)
-|.++.++++|+.+.|.-+-..+...++.-.+...
T Consensus 321 PE~~i~LAqavvyLA~aPKSNavY~A~~~A~~d~~ 355 (436)
T COG2256 321 PEARIALAQAVVYLALAPKSNAVYTAINAALADAK 355 (436)
T ss_pred chHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHH
Confidence 48899999999987777666666666666555443
No 145
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.05 E-value=1.1e+03 Score=25.56 Aligned_cols=152 Identities=19% Similarity=0.229 Sum_probs=91.2
Q ss_pred HHHHHHHhhhCHHHHHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhhCCCCCChhHHHHHHHHHHhCCCCCCCCCCCCC
Q 024660 39 SISARYVAAQRYSEALDLLHAGACLQLKNNQLTCGAELAVSFVEALVKGKVAYDNENLDRVRKIYELFPQIPVPHNLEDD 118 (264)
Q Consensus 39 Tl~~Ry~~~kk~~eAieLL~~GA~~ll~~~Q~~sa~DL~~llvevl~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~l~~~ 118 (264)
.+..|++..+.|..||.+.. +-+.....|+=.-.-....+.+...+.|++.++.|.+=++.- ..+.
T Consensus 442 ~vi~Rl~~r~~Y~vaIQva~------~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~---~~~~----- 507 (829)
T KOG2280|consen 442 VVIDRLVDRHLYSVAIQVAK------LLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK---LTPG----- 507 (829)
T ss_pred hhhHHHHhcchhHHHHHHHH------HhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhccc---CCCc-----
Confidence 46799999999999998754 334444444333344445566666777888888888766651 1111
Q ss_pred chHHHHHHHHhhhhhhhhhhhHHHHHHHHhhhhcCCCCCCCHHHHHHHHH----------HHHhcCCCcChHhhhhhhhc
Q 024660 119 DDLHELTEALGAAKLRVEGCSSFLKAAIKWSIEFGAPKTGSPELHVMLAE----------YLYSESPELDMARVSFHFVR 188 (264)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~----------~~~~e~~~~~~~~A~~Hfl~ 188 (264)
.++.+-| +.. +..|-++|-..|.+ .+++-+ ++..|..--+-
T Consensus 508 --------------------iSy~~iA---~~A---y~~GR~~LA~kLle~E~~~~~qV~lLL~m~---~~~~AL~kaie 558 (829)
T KOG2280|consen 508 --------------------ISYAAIA---RRA---YQEGRFELARKLLELEPRSGEQVPLLLKMK---DSSLALKKAIE 558 (829)
T ss_pred --------------------eeHHHHH---HHH---HhcCcHHHHHHHHhcCCCccchhHHHhccc---hHHHHHHHHHh
Confidence 2222111 111 23477777766654 344445 66677777777
Q ss_pred CCChHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhh
Q 024660 189 GNNPEKFASTIVNFMGKCYPGEDDLAVARAILMYLSLGNMKDANYIMDEVKKQVE 243 (264)
Q Consensus 189 ~~d~~~~a~~L~ew~~~~~~~e~dlfiaRaVL~~L~l~n~~~A~~~~~~f~~~~~ 243 (264)
+.|++..-.+|..-..+- +|+-| +..+.+..+|..++..|+++-.
T Consensus 559 s~d~~Li~~Vllhlk~~~---------~~s~l-~~~l~~~p~a~~lY~~~~r~~~ 603 (829)
T KOG2280|consen 559 SGDTDLIIQVLLHLKNKL---------NRSSL-FMTLRNQPLALSLYRQFMRHQD 603 (829)
T ss_pred cCCchhHHHHHHHHHHHH---------HHHHH-HHHHHhchhhhHHHHHHHHhhc
Confidence 777776666666643321 11111 2456778899999999987433
No 146
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=20.53 E-value=1.9e+02 Score=24.72 Aligned_cols=70 Identities=17% Similarity=0.250 Sum_probs=33.6
Q ss_pred CCchHHHHHHHHHHhccCChhHHHHHHHHHHH-HHHhhhCHHHHHHHHHHHHHHH--HHcCCcccHHHHHHHH
Q 024660 11 LPPAQENIDKLEKIVNEGNFYGAQQMYKSISA-RYVAAQRYSEALDLLHAGACLQ--LKNNQLTCGAELAVSF 80 (264)
Q Consensus 11 ~~~~~r~l~rl~~~i~~G~~YEAhQ~~RTl~~-Ry~~~kk~~eAieLL~~GA~~l--l~~~Q~~sa~DL~~ll 80 (264)
-..+.+.++|.+..++.|.=-|..=.++..-. .++.+++|.+|.+++.+....+ ....+.-+..|++.|-
T Consensus 89 ~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~~~~~~~el~s~~d~a~Y~ 161 (177)
T PF10602_consen 89 WSHVEKYIEKAESLIEKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTFTSLQYTELISYNDFAIYG 161 (177)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCCCCCchhhhcCHHHHHHHH
Confidence 34566667777777776543222211111111 1244566666666665554444 2334444555555443
No 147
>PF04233 Phage_Mu_F: Phage Mu protein F like protein; InterPro: IPR006528 This domain is found exclusively in phage-related proteins, internally or toward the C terminus. Some of these proteins have been identified as being involved in phage head morphogenesis [, ].
Probab=20.20 E-value=2.8e+02 Score=20.99 Aligned_cols=40 Identities=23% Similarity=0.277 Sum_probs=32.1
Q ss_pred chHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhhhCHHH
Q 024660 13 PAQENIDKLEKIVNEGNFYGAQQMYKSISARYVAAQRYSE 52 (264)
Q Consensus 13 ~~~r~l~rl~~~i~~G~~YEAhQ~~RTl~~Ry~~~kk~~e 52 (264)
+.+.+..+|+...+....|.|+.++||-..|-..+..++.
T Consensus 16 ~~~~~~~~l~~~~~~~~~~ra~~iarTe~~~a~~~a~~~~ 55 (112)
T PF04233_consen 16 SPQEIAKRLRDRGGVTSRYRAERIARTETARAYNAARWQQ 55 (112)
T ss_pred CHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677778888887776789999999999999777766655
No 148
>PF03540 TFIID_30kDa: Transcription initiation factor TFIID 23-30kDa subunit; InterPro: IPR003923 Transcription initiation factor TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors. The complex includes TATA binding protein (TBP) and various TBP-associated factors (TAFS). TFIID a bona fide RNA polymerase II-specific TATA-binding protein-associated factor (TAF) and is essential for viability []. TFIID acts to nucleate the transcription complex, recruiting the rest of the factors through a direct interaction with TFIIB. The TBP subunit of TFIID is sufficient for TATA-element binding and TFIIB interaction, and can support basal transcription. The protein belongs to the TAF2H family.; GO: 0006352 transcription initiation, DNA-dependent, 0005634 nucleus
Probab=20.20 E-value=2.1e+02 Score=19.95 Aligned_cols=22 Identities=9% Similarity=0.152 Sum_probs=18.3
Q ss_pred HHhhCCCCCChhHHHHHHHHHH
Q 024660 83 ALVKGKVAYDNENLDRVRKIYE 104 (264)
Q Consensus 83 vl~~~~~~~~~~~~~rl~~l~~ 104 (264)
.|+++|+.+++..+-||+.|..
T Consensus 11 yL~~~G~~~~D~rv~RLvSLaa 32 (51)
T PF03540_consen 11 YLERSGFQTSDPRVKRLVSLAA 32 (51)
T ss_pred HHHHCCCCCCCHhHHHHHHHHH
Confidence 4789999999988888888765
No 149
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=20.02 E-value=95 Score=30.55 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=17.6
Q ss_pred HHHHHHHHHhhhCHHHHHHHHH
Q 024660 37 YKSISARYVAAQRYSEALDLLH 58 (264)
Q Consensus 37 ~RTl~~Ry~~~kk~~eAieLL~ 58 (264)
++--=|.|.+||||+||||--.
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs 121 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYS 121 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhh
Confidence 4556688999999999999543
Done!