Query 024660
Match_columns 264
No_of_seqs 107 out of 190
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 12:12:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024660.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024660hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lpz_A GET4 (YOR164C homolog); 100.0 6.8E-74 2.3E-78 535.1 24.8 226 11-264 9-254 (336)
2 2wpv_A GET4, UPF0363 protein Y 100.0 4.3E-73 1.5E-77 526.0 23.9 224 13-264 12-254 (312)
3 4b4t_Q 26S proteasome regulato 97.7 0.0012 4E-08 59.5 15.7 189 17-243 7-206 (434)
4 2ifu_A Gamma-SNAP; membrane fu 97.5 0.0089 3E-07 52.4 17.9 193 27-239 29-222 (307)
5 2ifu_A Gamma-SNAP; membrane fu 96.8 0.041 1.4E-06 48.1 15.0 176 26-243 3-186 (307)
6 3gw4_A Uncharacterized protein 96.6 0.046 1.6E-06 43.1 12.6 175 25-243 3-178 (203)
7 3ro3_A PINS homolog, G-protein 96.5 0.026 9.1E-07 42.0 10.1 134 24-187 19-153 (164)
8 1qqe_A Vesicular transport pro 96.4 0.049 1.7E-06 47.2 12.9 194 29-242 32-229 (292)
9 3edt_B KLC 2, kinesin light ch 96.2 0.18 6.2E-06 41.1 14.7 185 24-244 11-201 (283)
10 3ro2_A PINS homolog, G-protein 95.8 0.68 2.3E-05 38.4 17.0 49 136-188 160-208 (338)
11 3edt_B KLC 2, kinesin light ch 95.7 0.34 1.1E-05 39.5 13.9 151 31-188 40-194 (283)
12 3nf1_A KLC 1, kinesin light ch 95.7 0.77 2.6E-05 38.1 17.7 195 10-244 22-227 (311)
13 3gw4_A Uncharacterized protein 95.4 0.097 3.3E-06 41.2 9.5 148 32-188 24-172 (203)
14 3nf1_A KLC 1, kinesin light ch 95.3 0.99 3.4E-05 37.4 16.0 49 138-189 172-221 (311)
15 3ulq_A Response regulator aspa 95.2 1.2 4.2E-05 39.2 16.9 90 139-243 204-295 (383)
16 4a1s_A PINS, partner of inscut 95.1 0.41 1.4E-05 42.1 13.5 91 139-243 283-374 (411)
17 3sf4_A G-protein-signaling mod 95.0 0.59 2E-05 40.5 14.0 91 138-243 246-338 (406)
18 3sf4_A G-protein-signaling mod 94.9 1.1 3.6E-05 38.8 15.4 131 15-174 10-141 (406)
19 3ro2_A PINS homolog, G-protein 94.8 0.15 5.1E-06 42.5 9.3 46 139-188 283-328 (338)
20 2qfc_A PLCR protein; TPR, HTH, 94.7 1.4 4.9E-05 37.5 15.5 47 139-188 175-221 (293)
21 1qqe_A Vesicular transport pro 94.6 0.3 1E-05 42.1 11.1 148 34-189 77-225 (292)
22 3ro3_A PINS homolog, G-protein 94.5 0.97 3.3E-05 33.1 15.1 156 28-242 3-159 (164)
23 4a1s_A PINS, partner of inscut 94.4 0.23 7.8E-06 43.8 9.9 146 35-190 224-370 (411)
24 2q7f_A YRRB protein; TPR, prot 94.4 1.3 4.4E-05 35.4 13.7 67 159-243 158-224 (243)
25 2ho1_A Type 4 fimbrial biogene 94.3 1.7 6E-05 35.1 17.1 83 157-243 138-240 (252)
26 3vtx_A MAMA; tetratricopeptide 94.3 1.5 5E-05 34.1 17.7 69 158-244 105-173 (184)
27 3ulq_A Response regulator aspa 94.0 3 0.0001 36.7 16.6 195 39-244 148-371 (383)
28 3q15_A PSP28, response regulat 94.0 1.1 3.6E-05 39.7 13.5 90 139-242 202-291 (378)
29 3as5_A MAMA; tetratricopeptide 93.9 1.5 5.2E-05 32.9 14.4 80 139-243 96-175 (186)
30 2xpi_A Anaphase-promoting comp 93.9 2 6.8E-05 39.7 15.7 87 139-243 495-581 (597)
31 3u3w_A Transcriptional activat 93.6 3.1 0.00011 35.4 15.3 91 139-243 175-268 (293)
32 2pl2_A Hypothetical conserved 93.1 3 0.0001 34.0 14.4 62 158-237 149-210 (217)
33 3uq3_A Heat shock protein STI1 93.0 2.8 9.7E-05 33.5 22.1 200 20-249 11-244 (258)
34 2xpi_A Anaphase-promoting comp 92.9 5.7 0.0002 36.6 20.6 80 158-241 439-545 (597)
35 2vq2_A PILW, putative fimbrial 92.8 2.8 9.4E-05 32.8 16.8 41 139-187 97-137 (225)
36 3hym_B Cell division cycle pro 92.5 2.2 7.7E-05 35.5 12.6 41 139-189 256-296 (330)
37 1w3b_A UDP-N-acetylglucosamine 92.4 5.1 0.00017 34.9 20.9 25 159-186 236-260 (388)
38 2qfc_A PLCR protein; TPR, HTH, 92.4 0.63 2.2E-05 39.8 9.1 160 15-187 76-261 (293)
39 3u4t_A TPR repeat-containing p 92.3 3.9 0.00013 33.3 16.1 179 20-243 9-210 (272)
40 3q15_A PSP28, response regulat 92.0 1.2 4.2E-05 39.3 10.8 135 40-189 228-362 (378)
41 4eqf_A PEX5-related protein; a 91.9 4.6 0.00016 34.8 14.2 197 16-244 67-313 (365)
42 3cv0_A Peroxisome targeting si 91.8 2 6.8E-05 35.8 11.4 182 24-243 99-317 (327)
43 1elr_A TPR2A-domain of HOP; HO 91.7 1 3.5E-05 32.0 8.3 47 139-188 58-104 (131)
44 3vtx_A MAMA; tetratricopeptide 91.5 3.9 0.00013 31.6 13.7 28 158-188 139-166 (184)
45 3qky_A Outer membrane assembly 91.4 5.3 0.00018 32.9 14.9 68 13-83 14-81 (261)
46 2fo7_A Synthetic consensus TPR 91.3 2.8 9.4E-05 29.4 11.3 27 158-187 101-127 (136)
47 3u3w_A Transcriptional activat 90.3 1.1 3.9E-05 38.2 8.6 162 15-188 76-262 (293)
48 3uq3_A Heat shock protein STI1 90.2 5.2 0.00018 31.9 12.1 47 139-188 58-104 (258)
49 1xi4_A Clathrin heavy chain; a 89.5 4.2 0.00014 44.6 13.7 156 37-206 988-1148(1630)
50 1hz4_A MALT regulatory protein 89.2 4.6 0.00016 35.0 11.8 45 138-187 154-198 (373)
51 1fch_A Peroxisomal targeting s 89.1 5 0.00017 34.2 11.8 81 139-239 271-357 (368)
52 2y4t_A DNAJ homolog subfamily 89.0 11 0.00039 33.0 17.0 28 158-188 175-202 (450)
53 2y4t_A DNAJ homolog subfamily 88.9 11 0.00039 33.0 22.0 40 139-188 197-236 (450)
54 4gco_A Protein STI-1; structur 88.8 4.7 0.00016 30.2 10.2 92 36-188 15-106 (126)
55 4eqf_A PEX5-related protein; a 88.5 11 0.00038 32.3 18.2 68 158-243 211-278 (365)
56 1w3b_A UDP-N-acetylglucosamine 88.5 12 0.0004 32.5 18.7 82 158-243 133-234 (388)
57 3mv2_B Coatomer subunit epsilo 88.5 14 0.00047 33.4 15.8 63 19-88 87-150 (310)
58 4b4t_Q 26S proteasome regulato 88.2 4.4 0.00015 35.7 11.2 46 138-187 154-199 (434)
59 3mkr_A Coatomer subunit epsilo 88.1 12 0.00041 32.2 16.7 38 143-188 118-155 (291)
60 2r5s_A Uncharacterized protein 88.1 5.1 0.00018 31.2 10.4 128 13-187 5-132 (176)
61 3txn_A 26S proteasome regulato 87.9 2.9 9.8E-05 39.3 10.0 42 139-184 79-120 (394)
62 3as5_A MAMA; tetratricopeptide 87.4 5.8 0.0002 29.6 10.0 40 139-188 130-169 (186)
63 1xi4_A Clathrin heavy chain; a 87.4 23 0.00078 39.0 17.6 54 23-76 1058-1127(1630)
64 3mkr_A Coatomer subunit epsilo 87.3 13 0.00046 31.9 17.5 139 14-188 81-225 (291)
65 1xnf_A Lipoprotein NLPI; TPR, 87.1 11 0.00036 30.5 12.9 40 139-188 97-136 (275)
66 3fp2_A TPR repeat-containing p 86.8 17 0.00059 32.6 18.3 94 139-243 364-493 (537)
67 3q49_B STIP1 homology and U bo 85.8 8.1 0.00028 27.9 10.2 40 139-188 63-102 (137)
68 3upv_A Heat shock protein STI1 85.2 8.6 0.0003 27.7 10.2 40 139-188 58-97 (126)
69 3cv0_A Peroxisome targeting si 85.2 15 0.0005 30.3 23.9 212 14-244 21-272 (327)
70 4ga2_A E3 SUMO-protein ligase 84.9 2 6.8E-05 33.2 6.2 94 143-240 14-128 (150)
71 2q7f_A YRRB protein; TPR, prot 84.9 12 0.00042 29.5 11.2 40 139-188 179-218 (243)
72 4gcn_A Protein STI-1; structur 84.5 6.9 0.00023 29.1 9.0 100 34-187 8-107 (127)
73 3ieg_A DNAJ homolog subfamily 84.3 17 0.00057 30.3 19.2 83 158-243 152-265 (359)
74 2xcb_A PCRH, regulatory protei 83.8 11 0.00036 28.2 9.9 40 139-188 72-111 (142)
75 3upv_A Heat shock protein STI1 83.7 5.6 0.00019 28.7 8.0 86 139-249 24-109 (126)
76 3n71_A Histone lysine methyltr 83.7 17 0.00057 34.7 13.3 140 18-189 313-461 (490)
77 2c2l_A CHIP, carboxy terminus 83.3 15 0.0005 31.3 11.7 29 157-188 69-97 (281)
78 1hh8_A P67PHOX, NCF-2, neutrop 83.2 13 0.00045 29.0 10.6 28 158-188 119-146 (213)
79 4abn_A Tetratricopeptide repea 82.8 17 0.00056 33.7 12.7 78 139-241 199-287 (474)
80 3e4b_A ALGK; tetratricopeptide 82.6 29 0.00099 31.8 15.9 45 142-189 303-348 (452)
81 1hz4_A MALT regulatory protein 82.4 23 0.00079 30.4 14.5 47 139-188 113-160 (373)
82 3ma5_A Tetratricopeptide repea 81.7 11 0.00039 26.5 9.4 68 158-243 5-72 (100)
83 3gyz_A Chaperone protein IPGC; 80.9 12 0.00043 29.2 9.6 121 14-187 8-128 (151)
84 2vgx_A Chaperone SYCD; alterna 80.1 17 0.00057 27.7 9.9 95 53-188 20-114 (148)
85 2xcb_A PCRH, regulatory protei 80.0 11 0.00037 28.2 8.6 68 158-243 50-117 (142)
86 2kck_A TPR repeat; tetratricop 79.5 6.3 0.00022 26.8 6.6 42 139-188 60-102 (112)
87 3hym_B Cell division cycle pro 78.9 26 0.00088 28.8 18.9 36 208-244 190-225 (330)
88 2xm6_A Protein corresponding t 78.9 38 0.0013 30.8 15.5 44 141-189 346-393 (490)
89 1na3_A Designed protein CTPR2; 78.7 11 0.00037 24.9 7.6 68 157-242 6-73 (91)
90 1fch_A Peroxisomal targeting s 78.6 29 0.00099 29.3 22.8 210 17-245 67-318 (368)
91 2gw1_A Mitochondrial precursor 78.5 35 0.0012 30.2 18.5 174 27-243 202-403 (514)
92 4abn_A Tetratricopeptide repea 78.4 22 0.00075 32.8 11.9 44 138-188 240-283 (474)
93 4gcn_A Protein STI-1; structur 77.9 15 0.00051 27.2 8.8 70 158-241 40-112 (127)
94 3rjv_A Putative SEL1 repeat pr 77.7 26 0.00089 28.2 13.5 145 17-189 5-155 (212)
95 2ho1_A Type 4 fimbrial biogene 77.6 25 0.00086 28.0 15.8 92 139-241 91-204 (252)
96 3fp2_A TPR repeat-containing p 77.5 39 0.0013 30.2 16.0 37 207-244 374-410 (537)
97 3k9i_A BH0479 protein; putativ 77.5 12 0.00041 26.9 7.9 83 139-243 10-92 (117)
98 2kat_A Uncharacterized protein 77.1 14 0.00049 26.1 8.2 68 158-243 17-84 (115)
99 2vq2_A PILW, putative fimbrial 76.9 23 0.00079 27.2 17.7 79 139-242 133-212 (225)
100 2lni_A Stress-induced-phosphop 76.8 15 0.00053 25.7 8.3 40 139-188 70-109 (133)
101 2yhc_A BAMD, UPF0169 lipoprote 76.8 28 0.00095 28.0 17.2 62 163-241 150-213 (225)
102 3sz7_A HSC70 cochaperone (SGT) 76.6 22 0.00075 26.9 9.6 39 139-187 65-103 (164)
103 2pl2_A Hypothetical conserved 75.8 29 0.001 27.9 18.6 67 158-243 116-182 (217)
104 2vgx_A Chaperone SYCD; alterna 75.5 18 0.0006 27.6 8.8 68 158-243 53-120 (148)
105 2fbn_A 70 kDa peptidylprolyl i 75.1 15 0.00053 28.7 8.6 27 35-61 39-65 (198)
106 4ga2_A E3 SUMO-protein ligase 75.1 25 0.00085 26.7 11.8 47 13-61 12-58 (150)
107 1ihg_A Cyclophilin 40; ppiase 75.1 30 0.001 31.0 11.6 29 34-62 223-251 (370)
108 3u4t_A TPR repeat-containing p 74.3 26 0.0009 28.1 10.0 97 139-243 57-173 (272)
109 2v5f_A Prolyl 4-hydroxylase su 73.9 6.1 0.00021 28.7 5.4 46 139-187 25-70 (104)
110 3sz7_A HSC70 cochaperone (SGT) 73.5 19 0.00066 27.2 8.6 80 139-243 31-110 (164)
111 2gw1_A Mitochondrial precursor 72.9 50 0.0017 29.1 18.5 27 35-61 238-264 (514)
112 3gyz_A Chaperone protein IPGC; 72.9 16 0.00054 28.6 8.1 68 158-243 68-135 (151)
113 2e2e_A Formate-dependent nitri 72.7 17 0.00057 27.7 8.1 94 139-243 30-146 (177)
114 1ouv_A Conserved hypothetical 71.2 41 0.0014 27.4 17.3 29 157-188 143-175 (273)
115 2fbn_A 70 kDa peptidylprolyl i 70.9 35 0.0012 26.6 9.8 100 53-188 37-147 (198)
116 2e2e_A Formate-dependent nitri 70.5 32 0.0011 26.0 12.7 27 158-187 113-139 (177)
117 2vsy_A XCC0866; transferase, g 70.5 56 0.0019 30.3 12.6 39 139-187 111-152 (568)
118 3ieg_A DNAJ homolog subfamily 70.2 45 0.0015 27.5 21.6 27 158-187 186-212 (359)
119 3rkv_A Putative peptidylprolyl 70.1 15 0.00052 27.7 7.2 40 139-188 83-122 (162)
120 4gco_A Protein STI-1; structur 70.0 30 0.001 25.5 10.8 68 158-243 45-112 (126)
121 4gyw_A UDP-N-acetylglucosamine 68.3 99 0.0034 30.7 17.2 27 158-187 109-135 (723)
122 2vsy_A XCC0866; transferase, g 67.7 39 0.0013 31.5 10.8 40 139-188 77-116 (568)
123 2kck_A TPR repeat; tetratricop 67.5 21 0.00073 24.0 7.0 68 158-243 38-108 (112)
124 2fo7_A Synthetic consensus TPR 66.6 28 0.00097 23.8 13.6 78 139-241 55-132 (136)
125 1na0_A Designed protein CTPR3; 65.2 30 0.001 23.6 9.2 27 158-187 75-101 (125)
126 2xev_A YBGF; tetratricopeptide 64.8 34 0.0011 24.1 8.0 25 160-187 76-100 (129)
127 2xev_A YBGF; tetratricopeptide 64.6 34 0.0012 24.0 8.1 65 161-243 40-107 (129)
128 1elw_A TPR1-domain of HOP; HOP 64.2 30 0.001 23.3 9.1 28 158-188 70-97 (118)
129 3urz_A Uncharacterized protein 64.2 33 0.0011 27.3 8.5 26 159-187 53-78 (208)
130 1na0_A Designed protein CTPR3; 63.3 32 0.0011 23.4 9.1 67 158-242 41-107 (125)
131 1a17_A Serine/threonine protei 63.1 41 0.0014 24.5 14.5 70 158-244 79-149 (166)
132 3mv2_B Coatomer subunit epsilo 62.2 62 0.0021 29.1 10.6 96 142-244 116-243 (310)
133 2pzi_A Probable serine/threoni 61.7 1.2E+02 0.0041 29.4 14.3 41 139-189 520-560 (681)
134 1na3_A Designed protein CTPR2; 60.6 7.9 0.00027 25.7 3.4 28 158-188 41-68 (91)
135 4g1t_A Interferon-induced prot 59.8 18 0.00061 32.1 6.5 28 158-188 428-455 (472)
136 1klx_A Cysteine rich protein B 59.7 52 0.0018 24.6 8.5 40 145-189 44-87 (138)
137 1klx_A Cysteine rich protein B 59.1 54 0.0018 24.6 10.7 41 144-189 79-123 (138)
138 1p5q_A FKBP52, FK506-binding p 58.0 50 0.0017 28.8 9.1 24 158-184 262-285 (336)
139 2l6j_A TPR repeat-containing p 57.8 35 0.0012 23.1 6.7 66 159-242 3-68 (111)
140 1xnf_A Lipoprotein NLPI; TPR, 57.6 70 0.0024 25.4 18.1 50 13-62 20-71 (275)
141 1ouv_A Conserved hypothetical 57.4 76 0.0026 25.7 16.0 29 157-188 179-211 (273)
142 4i17_A Hypothetical protein; T 55.8 42 0.0014 26.5 7.6 81 139-243 27-107 (228)
143 1hxi_A PEX5, peroxisome target 55.5 55 0.0019 23.7 7.8 28 158-188 83-110 (121)
144 4gyw_A UDP-N-acetylglucosamine 54.2 1.7E+02 0.006 28.9 14.5 96 139-245 63-178 (723)
145 2ond_A Cleavage stimulation fa 54.2 53 0.0018 27.7 8.4 92 139-241 119-232 (308)
146 1elr_A TPR2A-domain of HOP; HO 54.1 50 0.0017 22.6 7.5 66 160-243 4-69 (131)
147 2vyi_A SGTA protein; chaperone 52.3 53 0.0018 22.4 10.7 27 158-187 78-104 (131)
148 1hxi_A PEX5, peroxisome target 51.9 41 0.0014 24.5 6.5 68 158-243 49-116 (121)
149 2l6j_A TPR repeat-containing p 51.1 12 0.00043 25.6 3.3 40 139-188 24-63 (111)
150 2lni_A Stress-induced-phosphop 50.7 59 0.002 22.5 10.6 118 13-174 15-132 (133)
151 1hh8_A P67PHOX, NCF-2, neutrop 50.1 85 0.0029 24.1 10.3 67 159-243 36-102 (213)
152 1ihg_A Cyclophilin 40; ppiase 49.6 54 0.0019 29.3 8.1 98 55-188 224-332 (370)
153 3qou_A Protein YBBN; thioredox 48.9 1.2E+02 0.0041 25.5 10.0 83 158-244 149-251 (287)
154 2kc7_A BFR218_protein; tetratr 48.1 14 0.00048 25.2 3.1 28 158-188 32-60 (99)
155 2crb_A Nuclear receptor bindin 47.9 31 0.001 26.2 5.0 35 32-67 14-48 (97)
156 4b4t_P 26S proteasome regulato 47.1 1.8E+02 0.0061 26.9 11.6 68 159-238 136-203 (445)
157 3mkq_A Coatomer beta'-subunit; 46.9 1.5E+02 0.0053 28.1 11.2 43 157-202 720-762 (814)
158 2yhc_A BAMD, UPF0169 lipoprote 46.4 1.1E+02 0.0037 24.3 13.9 23 221-243 156-178 (225)
159 2cwy_A Hypothetical protein TT 45.7 88 0.003 23.1 8.1 25 20-44 7-31 (94)
160 3qou_A Protein YBBN; thioredox 45.4 1.4E+02 0.0046 25.1 16.3 28 158-188 217-244 (287)
161 4i17_A Hypothetical protein; T 45.3 1.1E+02 0.0037 23.9 11.9 25 161-188 118-142 (228)
162 2c2l_A CHIP, carboxy terminus 45.3 1E+02 0.0035 25.8 8.8 69 158-244 36-104 (281)
163 3ffl_A Anaphase-promoting comp 44.9 1.3E+02 0.0045 24.8 9.8 104 57-187 23-146 (167)
164 3qky_A Outer membrane assembly 44.4 63 0.0021 26.2 7.1 19 27-45 110-128 (261)
165 3k9i_A BH0479 protein; putativ 44.0 16 0.00055 26.1 3.0 40 139-188 47-86 (117)
166 3ma5_A Tetratricopeptide repea 43.7 71 0.0024 22.1 6.5 52 25-82 18-69 (100)
167 1wao_1 Serine/threonine protei 41.8 54 0.0018 30.4 6.9 116 25-187 17-134 (477)
168 3urz_A Uncharacterized protein 41.7 1.3E+02 0.0043 23.7 15.1 30 13-42 3-32 (208)
169 2xm6_A Protein corresponding t 40.7 2E+02 0.0069 25.8 17.4 44 143-188 313-356 (490)
170 2ooe_A Cleavage stimulation fa 39.9 1.6E+02 0.0053 26.9 9.8 83 158-243 319-422 (530)
171 1a17_A Serine/threonine protei 39.9 1E+02 0.0035 22.2 12.0 27 158-187 113-141 (166)
172 2if4_A ATFKBP42; FKBP-like, al 39.4 96 0.0033 27.0 7.9 41 139-189 250-290 (338)
173 2wm9_A Dedicator of cytokinesi 39.4 1.2E+02 0.004 28.4 8.8 64 24-87 21-121 (428)
174 2ijq_A Hypothetical protein; s 38.5 1.1E+02 0.0039 24.9 7.6 74 14-87 32-108 (161)
175 3q49_B STIP1 homology and U bo 37.7 1E+02 0.0036 21.6 11.5 68 159-244 42-109 (137)
176 2vyi_A SGTA protein; chaperone 35.8 1E+02 0.0034 20.9 12.0 29 139-174 100-128 (131)
177 2kat_A Uncharacterized protein 35.7 28 0.00097 24.4 3.1 40 139-188 39-78 (115)
178 4g1t_A Interferon-induced prot 34.7 2.3E+02 0.0079 24.7 19.5 217 13-243 30-278 (472)
179 2r5s_A Uncharacterized protein 34.0 1.5E+02 0.0052 22.3 9.5 82 158-243 38-139 (176)
180 3qwp_A SET and MYND domain-con 34.0 1.8E+02 0.0062 26.7 9.2 91 15-105 288-383 (429)
181 2if4_A ATFKBP42; FKBP-like, al 33.1 2.4E+02 0.0081 24.4 11.1 79 22-105 187-276 (338)
182 3mkq_A Coatomer beta'-subunit; 31.5 68 0.0023 30.6 5.9 75 157-237 678-761 (814)
183 4e2i_2 DNA polymerase alpha su 30.8 1E+02 0.0036 22.3 5.4 46 80-153 8-53 (78)
184 1wao_1 Serine/threonine protei 30.6 1.4E+02 0.0048 27.5 7.9 78 139-241 26-103 (477)
185 2p9x_A Hypothetical protein PH 28.7 65 0.0022 24.3 4.0 49 48-106 47-96 (99)
186 3a1y_A 50S ribosomal protein P 28.1 1.3E+02 0.0043 20.3 5.2 40 61-104 7-46 (58)
187 2fvh_A Urease gamma subunit; p 27.9 1.1E+02 0.0037 24.0 5.3 45 40-86 39-86 (120)
188 3h3m_A Flagellar protein FLIT; 27.3 2.2E+02 0.0075 22.2 7.6 55 52-106 25-84 (126)
189 1vh6_A Flagellar protein FLIS; 27.2 96 0.0033 24.7 5.2 79 13-106 32-113 (145)
190 1b79_A DNAB helicase; hexamer, 26.9 1.7E+02 0.0059 22.0 6.5 34 19-52 39-73 (119)
191 3spa_A Mtrpol, DNA-directed RN 26.8 1.7E+02 0.0057 31.2 8.1 65 33-101 126-208 (1134)
192 3e4b_A ALGK; tetratricopeptide 26.4 3.6E+02 0.012 24.2 16.5 191 14-244 233-424 (452)
193 2v5f_A Prolyl 4-hydroxylase su 25.8 1.6E+02 0.0055 20.7 5.9 54 23-76 14-68 (104)
194 2d2s_A Exocyst complex compone 25.3 3.1E+02 0.011 23.3 12.3 47 9-68 6-52 (235)
195 3rjv_A Putative SEL1 repeat pr 25.1 53 0.0018 26.3 3.4 30 157-189 15-44 (212)
196 4fur_A Urease subunit gamma 2; 23.8 1.7E+02 0.0059 22.3 5.7 46 40-87 23-71 (104)
197 2pzi_A Probable serine/threoni 23.6 2.3E+02 0.008 27.2 8.3 83 139-240 411-495 (681)
198 4ep8_A Urease subunit gamma; a 22.3 1.7E+02 0.0058 22.2 5.3 46 40-87 19-67 (100)
199 3pvs_A Replication-associated 22.0 1.6E+02 0.0056 27.3 6.6 83 139-224 212-300 (447)
200 3u64_A Protein TP_0956; tetrat 21.8 1.3E+02 0.0045 27.1 5.5 29 157-188 196-229 (301)
201 1p5q_A FKBP52, FK506-binding p 21.0 3.9E+02 0.013 22.8 9.7 39 139-187 216-254 (336)
202 2oxl_A Hypothetical protein YM 20.9 2.1E+02 0.0073 19.7 5.3 50 54-103 7-56 (64)
203 2keb_A DNA polymerase subunit 20.8 1.5E+02 0.0052 22.5 4.8 66 50-152 10-75 (101)
204 3qww_A SET and MYND domain-con 20.4 5E+02 0.017 23.8 10.7 88 19-106 303-395 (433)
205 1z6t_A APAF-1, apoptotic prote 20.3 3.3E+02 0.011 25.4 8.4 99 160-262 454-568 (591)
No 1
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=100.00 E-value=6.8e-74 Score=535.10 Aligned_cols=226 Identities=24% Similarity=0.352 Sum_probs=215.1
Q ss_pred CCchHHHHHHHHHHhccCCh---hHHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhhC
Q 024660 11 LPPAQENIDKLEKIVNEGNF---YGAQQMYKSISARYVAAQRYSEALDLLHAGACLQLKNNQLTCGAELAVSFVEALVKG 87 (264)
Q Consensus 11 ~~~~~r~l~rl~~~i~~G~~---YEAhQ~~RTl~~Ry~~~kk~~eAieLL~~GA~~ll~~~Q~~sa~DL~~llvevl~~~ 87 (264)
+.+++||++||+++|++|+| |||||||||+++||++++||++|+||||+||+.||++||++||+||+++|||||+++
T Consensus 9 ~~~~~~~i~rl~~~I~~G~y~~~YEAHQ~~RTi~~Ry~~~k~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~llvevy~~~ 88 (336)
T 3lpz_A 9 SNKIERIIARLQRRIAEGQPEEQYEAAQETRLVAARYSKQGNWAAAVDILASVSQTLLRSGQGGSGGDLAVLLVDTFRQA 88 (336)
T ss_dssp -CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhCCCCccccHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHc
Confidence 34899999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhHHHHHHHHHHhCCCCCCCCCCCCCchHHHHHHHHhhhhhhhhhhhHHHHHHHHhhhhcCCCCCCCHHHHHHHH
Q 024660 88 KVAYDNENLDRVRKIYELFPQIPVPHNLEDDDDLHELTEALGAAKLRVEGCSSFLKAAIKWSIEFGAPKTGSPELHVMLA 167 (264)
Q Consensus 88 ~~~~~~~~~~rl~~l~~~~p~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~~~~fl~~ai~WS~~~g~~~~Gdp~LH~~la 167 (264)
+++||+++++||++|++.||+++|+| ++||++||+||+++|++++|||+||+++|
T Consensus 89 ~~~~~~~~~~rL~~L~~~~~~~~p~r-------------------------~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig 143 (336)
T 3lpz_A 89 GQRVDGASRGKLLGCLRLFQPGEPVR-------------------------KRFVKEMIDWSKKFGDYPAGDPELHHVVG 143 (336)
T ss_dssp TCCCCHHHHHHHHHHHTTSCTTCHHH-------------------------HHHHHHHHHHHHHHSSCTTCCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhCCCCCcHH-------------------------HHHHHHHHHHHhhcCCCCCCCHHHHHHHH
Confidence 99999999999999999999999887 99999999999999999999999999999
Q ss_pred HHHHhcCCCcChHhhhhhhhcCCCh--HHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhh
Q 024660 168 EYLYSESPELDMARVSFHFVRGNNP--EKFASTIVNFMGKCYPGEDDLAVARAILMYLSLGNMKDANYIMDEVKKQVENK 245 (264)
Q Consensus 168 ~~~~~e~~~~~~~~A~~Hfl~~~d~--~~~a~~L~ew~~~~~~~e~dlfiaRaVL~~L~l~n~~~A~~~~~~f~~~~~~~ 245 (264)
++||+|+ +|++|++|||+|+|+ +.||+||++|+++++|+|.|+|++||||||||++|+++|+++++.|++++++.
T Consensus 144 ~~~~~e~---~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~~l~~~ 220 (336)
T 3lpz_A 144 TLYVEEG---EFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHTAPLYCARAVLPYLLVANVRAANTAYRIFTSALVED 220 (336)
T ss_dssp HHHHHTT---CHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHccC---CHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhc
Confidence 9999999 999999999999986 59999999999999999999999999999999999999999999999988543
Q ss_pred hcC---------------CCCCchhHHHHHHhcC
Q 024660 246 QLQ---------------LQPSDLIQFVFYVLQT 264 (264)
Q Consensus 246 ~~~---------------~~~~PLLNFl~~Ll~t 264 (264)
.+. +|++|||||+||||+|
T Consensus 221 ~p~L~~q~~~~~~~~~~~~p~~PLLNFl~lLllt 254 (336)
T 3lpz_A 221 NKGLTVQNIGSQSAELRIFPSLPLLNFISMLLLS 254 (336)
T ss_dssp CTTSCCEESCC--CCCEECTTCHHHHHHHHHHHH
T ss_pred CCCccccccccCCcccccCCCCchHHHHHHHHHH
Confidence 221 5679999999999975
No 2
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=100.00 E-value=4.3e-73 Score=526.02 Aligned_cols=224 Identities=21% Similarity=0.319 Sum_probs=214.2
Q ss_pred chHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhhCCCCCC
Q 024660 13 PAQENIDKLEKIVNEGNFYGAQQMYKSISARYVAAQRYSEALDLLHAGACLQLKNNQLTCGAELAVSFVEALVKGKVAYD 92 (264)
Q Consensus 13 ~~~r~l~rl~~~i~~G~~YEAhQ~~RTl~~Ry~~~kk~~eAieLL~~GA~~ll~~~Q~~sa~DL~~llvevl~~~~~~~~ 92 (264)
|++||++||+++|++|+||||||||||+++||++++||++|+||||+||+.|+++||++||+||+++|||||++++++++
T Consensus 12 ~~~r~l~rl~~~I~~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~ 91 (312)
T 2wpv_A 12 KLAKTLQRFENKIKAGDYYEAHQTLRTIANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVD 91 (312)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCS
T ss_pred HHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhCCCCCCCCCCCCCchHHHHHHHHhhhhhhhhhhhHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHh
Q 024660 93 NENLDRVRKIYELFPQIPVPHNLEDDDDLHELTEALGAAKLRVEGCSSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYS 172 (264)
Q Consensus 93 ~~~~~rl~~l~~~~p~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~~~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~~~~~ 172 (264)
+++++||++|++.||+++|+| .+|+++||+||++.|++++|||+||+++|++||+
T Consensus 92 ~~~~~rl~~l~~~~p~~~~~r-------------------------~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~ 146 (312)
T 2wpv_A 92 DISVARLVRLIAELDPSEPNL-------------------------KDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLE 146 (312)
T ss_dssp HHHHHHHHHHHTTCCTTCTTH-------------------------HHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCchH-------------------------HHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhh
Confidence 999999999999999999888 9999999999999998999999999999999999
Q ss_pred cCCCcChHhhhhhhhcCC--ChHHHHHHHHHHHhh---cCCCchHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhh--
Q 024660 173 ESPELDMARVSFHFVRGN--NPEKFASTIVNFMGK---CYPGEDDLAVARAILMYLSLGNMKDANYIMDEVKKQVENK-- 245 (264)
Q Consensus 173 e~~~~~~~~A~~Hfl~~~--d~~~~a~~L~ew~~~---~~~~e~dlfiaRaVL~~L~l~n~~~A~~~~~~f~~~~~~~-- 245 (264)
|+ ++.+|++|||+|+ |++.|++||++|+++ |+|+|.|+|++|+||+|||++|+++|+++++.|++++++.
T Consensus 147 e~---~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~RaVL~yL~l~n~~~A~~~~~~f~~~~~~~~~ 223 (312)
T 2wpv_A 147 GD---FVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFFSRLVFNYLFISNISFAHESKDIFLERFIEKFH 223 (312)
T ss_dssp TT---CHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHHHHC
T ss_pred cC---CHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcc
Confidence 99 9999999999999 589999999999988 9999999999999999999999999999999999999541
Q ss_pred ---------hc--C-CCCCchhHHHHHHhcC
Q 024660 246 ---------QL--Q-LQPSDLIQFVFYVLQT 264 (264)
Q Consensus 246 ---------~~--~-~~~~PLLNFl~~Ll~t 264 (264)
.. + +|++|||||+||||+|
T Consensus 224 ~~~~~~~~~~~~~~~~p~~pllnF~~lLl~t 254 (312)
T 2wpv_A 224 PKYEKIDKNGYEIVFFEDYSDLNFLQLLLIT 254 (312)
T ss_dssp CCEEEEEETTEEEEEESSCHHHHHHHHHHHH
T ss_pred cccccccccccCCCCCCCCccHHHHHHHHHH
Confidence 11 1 3578999999999975
No 3
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.70 E-value=0.0012 Score=59.46 Aligned_cols=189 Identities=13% Similarity=0.091 Sum_probs=121.1
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHHHHHhhhC-----------HHHHHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHh
Q 024660 17 NIDKLEKIVNEGNFYGAQQMYKSISARYVAAQR-----------YSEALDLLHAGACLQLKNNQLTCGAELAVSFVEALV 85 (264)
Q Consensus 17 ~l~rl~~~i~~G~~YEAhQ~~RTl~~Ry~~~kk-----------~~eAieLL~~GA~~ll~~~Q~~sa~DL~~llvevl~ 85 (264)
-|+.-+..+++|+|-||.+.|+.+......... ..+--+.|..=+..+.+.|++..+.++...+++...
T Consensus 7 ~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~ 86 (434)
T 4b4t_Q 7 KLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMM 86 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 456677889999999999999998875433211 111222344446677788999888888777777666
Q ss_pred hCCCCCChhHHHHHHHHHHhCCCCCCCCCCCCCchHHHHHHHHhhhhhhhhhhhHHHHHHHHhhhhcCCCCCCCHHHHHH
Q 024660 86 KGKVAYDNENLDRVRKIYELFPQIPVPHNLEDDDDLHELTEALGAAKLRVEGCSSFLKAAIKWSIEFGAPKTGSPELHVM 165 (264)
Q Consensus 86 ~~~~~~~~~~~~rl~~l~~~~p~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~~~~fl~~ai~WS~~~g~~~~Gdp~LH~~ 165 (264)
+.+-.. ....+..++..+..... . .+....+...++.|..+.+. .++...++..
T Consensus 87 ~~~~~~---~~~~~~~~l~~~~~~~~-~---------------------~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~ 140 (434)
T 4b4t_Q 87 QFAKSK---TVKVLKTLIEKFEQVPD-S---------------------LDDQIFVCEKSIEFAKREKR-VFLKHSLSIK 140 (434)
T ss_dssp TSCHHH---HHHHHHHHHHHHCSCCS-C---------------------HHHHHHHHHHHHHHHHHSSC-CSSHHHHHHH
T ss_pred HccchH---HHHHHHHHHHHHHhCCC-C---------------------HHHHHHHHHHHHHHHHHhCc-cHHHHHHHHH
Confidence 543211 22233333443332211 0 11227888999999998753 5788899999
Q ss_pred HHHHHHhcCCCcChHhhhhhhhcCCChHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhh
Q 024660 166 LAEYLYSESPELDMARVSFHFVRGNNPEKFASTIVNFMGKCYPGEDDLAVARAILMYLSLGNMKDANYIMDEVKKQVE 243 (264)
Q Consensus 166 la~~~~~e~~~~~~~~A~~Hfl~~~d~~~~a~~L~ew~~~~~~~e~dlfiaRaVL~~L~l~n~~~A~~~~~~f~~~~~ 243 (264)
+|.+|...| +|.+|...+- +.+......+...+.--++..-.-.|+.++|...|...++.-....+
T Consensus 141 la~~~~~~g---~~~~A~~~l~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~ 206 (434)
T 4b4t_Q 141 LATLHYQKK---QYKDSLALIN---------DLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAAN 206 (434)
T ss_dssp HHHHHHHHT---CHHHHHHHHH---------HHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcc---ChHHHHHHHH---------HHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhh
Confidence 999999999 9999987652 23333333332222223444555567889999999988877654433
No 4
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=97.48 E-value=0.0089 Score=52.42 Aligned_cols=193 Identities=11% Similarity=0.042 Sum_probs=115.3
Q ss_pred cCChhHHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhhCCC-CCChhHHHHHHHHHHh
Q 024660 27 EGNFYGAQQMYKSISARYVAAQRYSEALDLLHAGACLQLKNNQLTCGAELAVSFVEALVKGKV-AYDNENLDRVRKIYEL 105 (264)
Q Consensus 27 ~G~~YEAhQ~~RTl~~Ry~~~kk~~eAieLL~~GA~~ll~~~Q~~sa~DL~~llvevl~~~~~-~~~~~~~~rl~~l~~~ 105 (264)
.|+|=+|...|.-..+-|..+++|++|++.+...+...-+.+....++.....+-.+|...+- +--.+.+.+.++++..
T Consensus 29 ~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~ 108 (307)
T 2ifu_A 29 KPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVE 108 (307)
T ss_dssp SCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 578889999999999999999999999999888887777776665555555555566665432 1112334444444432
Q ss_pred CCCCCCCCCCCCCchHHHHHHHHhhhhhhhhhhhHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHhcCCCcChHhhhhh
Q 024660 106 FPQIPVPHNLEDDDDLHELTEALGAAKLRVEGCSSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDMARVSFH 185 (264)
Q Consensus 106 ~p~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~~~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~~~~~e~~~~~~~~A~~H 185 (264)
.. .+. ....-...+-..-.. ...++-..+.++|+.+....+. +.+....+..+|.+|.+.+ +|.+|..+
T Consensus 109 ~g---~~~--~~a~~~~~lg~~~~~--g~~~~A~~~~~~Al~~~~~~~~-~~~~~~~~~~lg~~~~~~g---~~~~A~~~ 177 (307)
T 2ifu_A 109 NG---TPD--TAAMALDRAGKLMEP--LDLSKAVHLYQQAAAVFENEER-LRQAAELIGKASRLLVRQQ---KFDEAAAS 177 (307)
T ss_dssp TT---CHH--HHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred cC---CHH--HHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHhCCC-hhHHHHHHHHHHHHHHHcC---CHHHHHHH
Confidence 11 000 000001111111111 1222336788889988876432 2344678889999999999 99999988
Q ss_pred hhcCCChHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 024660 186 FVRGNNPEKFASTIVNFMGKCYPGEDDLAVARAILMYLSLGNMKDANYIMDEVK 239 (264)
Q Consensus 186 fl~~~d~~~~a~~L~ew~~~~~~~e~dlfiaRaVL~~L~l~n~~~A~~~~~~f~ 239 (264)
|-.+-. -....+.+..........++.+++.++...|...++..+
T Consensus 178 ~~~al~---------~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 178 LQKEKS---------MYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHH---------HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHH---------HHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 753211 000111101111234445566778888888888888776
No 5
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=96.78 E-value=0.041 Score=48.10 Aligned_cols=176 Identities=10% Similarity=0.107 Sum_probs=111.1
Q ss_pred ccCChhHHHHHHHHHHHHHH----h-hhCHHHHHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhhCCCCCCh-hHHHHH
Q 024660 26 NEGNFYGAQQMYKSISARYV----A-AQRYSEALDLLHAGACLQLKNNQLTCGAELAVSFVEALVKGKVAYDN-ENLDRV 99 (264)
Q Consensus 26 ~~G~~YEAhQ~~RTl~~Ry~----~-~kk~~eAieLL~~GA~~ll~~~Q~~sa~DL~~llvevl~~~~~~~~~-~~~~rl 99 (264)
..|+|=||.++++-.-.+.. + .++|++|+++..+.+..+...|++..|.+...-.++++.+.+-+... ..+..+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~l 82 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQA 82 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34555567666665444332 2 58999999999999999999999999999999999998887643322 345667
Q ss_pred HHHHHhCCCCCCCCCCCCCchHHHHHHHHhhhhhhhhhhhHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHhcCCCcCh
Q 024660 100 RKIYELFPQIPVPHNLEDDDDLHELTEALGAAKLRVEGCSSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDM 179 (264)
Q Consensus 100 ~~l~~~~p~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~~~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~~~~~e~~~~~~ 179 (264)
..++.....-+ +-..+.++|+.-....|. +.+....+..+|.+|.. + ++
T Consensus 83 g~~~~~~g~~~--------------------------~A~~~~~~Al~l~~~~g~-~~~~a~~~~~lg~~~~~-g---~~ 131 (307)
T 2ifu_A 83 GMMLKDLQRMP--------------------------EAVQYIEKASVMYVENGT-PDTAAMALDRAGKLMEP-L---DL 131 (307)
T ss_dssp HHHHHHTTCGG--------------------------GGHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHHHTT-T---CH
T ss_pred HHHHHhCCCHH--------------------------HHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHc-C---CH
Confidence 77776543211 116677778776654332 22334678889999988 8 99
Q ss_pred HhhhhhhhcCCChHHHHHHHHHHHh-hcCCC-chHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhh
Q 024660 180 ARVSFHFVRGNNPEKFASTIVNFMG-KCYPG-EDDLAVARAILMYLSLGNMKDANYIMDEVKKQVE 243 (264)
Q Consensus 180 ~~A~~Hfl~~~d~~~~a~~L~ew~~-~~~~~-e~dlfiaRaVL~~L~l~n~~~A~~~~~~f~~~~~ 243 (264)
.+|..||-.+- ++.. .+.+. ....+. ..-..|..+++...|...++.-++..+
T Consensus 132 ~~A~~~~~~Al----------~~~~~~~~~~~~~~~~~-~lg~~~~~~g~~~~A~~~~~~al~~~~ 186 (307)
T 2ifu_A 132 SKAVHLYQQAA----------AVFENEERLRQAAELIG-KASRLLVRQQKFDEAAASLQKEKSMYK 186 (307)
T ss_dssp HHHHHHHHHHH----------HHHHHTTCHHHHHHHHH-HHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH----------HHHHhCCChhHHHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 99999885321 1111 11111 111122 222234556777777777666665443
No 6
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=96.57 E-value=0.046 Score=43.15 Aligned_cols=175 Identities=6% Similarity=-0.083 Sum_probs=100.6
Q ss_pred hccCChhHHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhhCCCCCCh-hHHHHHHHHH
Q 024660 25 VNEGNFYGAQQMYKSISARYVAAQRYSEALDLLHAGACLQLKNNQLTCGAELAVSFVEALVKGKVAYDN-ENLDRVRKIY 103 (264)
Q Consensus 25 i~~G~~YEAhQ~~RTl~~Ry~~~kk~~eAieLL~~GA~~ll~~~Q~~sa~DL~~llvevl~~~~~~~~~-~~~~rl~~l~ 103 (264)
+..|+|=+|.+.++.+ .+........+..-+..+...|++..|.+...-.++.+.+.+.+... .....+..+.
T Consensus 3 ~~~g~~~~A~~~~~~~------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~ 76 (203)
T 3gw4_A 3 FEAHDYALAERQAQAL------LAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVE 76 (203)
T ss_dssp ----CHHHHHHHHHHH------HTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHh------cCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 5677777777744333 12222344555666667777777777777777777777766543332 2334555555
Q ss_pred HhCCCCCCCCCCCCCchHHHHHHHHhhhhhhhhhhhHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHhcCCCcChHhhh
Q 024660 104 ELFPQIPVPHNLEDDDDLHELTEALGAAKLRVEGCSSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDMARVS 183 (264)
Q Consensus 104 ~~~p~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~~~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~~~~~e~~~~~~~~A~ 183 (264)
..... .++...+..+|+......++.+.+....+..+|.+++..| ++.+|.
T Consensus 77 ~~~g~--------------------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g---~~~~A~ 127 (203)
T 3gw4_A 77 RMAGN--------------------------WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFG---DLAGAR 127 (203)
T ss_dssp HHTTC--------------------------HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHT---CHHHHH
T ss_pred HHcCC--------------------------HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhC---CHHHHH
Confidence 54321 1223778888888887665333355677899999999999 999999
Q ss_pred hhhhcCCChHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhh
Q 024660 184 FHFVRGNNPEKFASTIVNFMGKCYPGEDDLAVARAILMYLSLGNMKDANYIMDEVKKQVE 243 (264)
Q Consensus 184 ~Hfl~~~d~~~~a~~L~ew~~~~~~~e~dlfiaRaVL~~L~l~n~~~A~~~~~~f~~~~~ 243 (264)
.+|-.+-. -....+.+.............|+..|+...|...+..-.+...
T Consensus 128 ~~~~~al~---------~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 178 (203)
T 3gw4_A 128 QEYEKSLV---------YAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFA 178 (203)
T ss_dssp HHHHHHHH---------HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH---------HHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 88754311 0101111111111122233345567888888888777665544
No 7
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=96.48 E-value=0.026 Score=41.96 Aligned_cols=134 Identities=9% Similarity=-0.064 Sum_probs=95.3
Q ss_pred HhccCChhHHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhhCCCCCCh-hHHHHHHHH
Q 024660 24 IVNEGNFYGAQQMYKSISARYVAAQRYSEALDLLHAGACLQLKNNQLTCGAELAVSFVEALVKGKVAYDN-ENLDRVRKI 102 (264)
Q Consensus 24 ~i~~G~~YEAhQ~~RTl~~Ry~~~kk~~eAieLL~~GA~~ll~~~Q~~sa~DL~~llvevl~~~~~~~~~-~~~~rl~~l 102 (264)
....|+|=+|.+.++.........+........+..-+..+...|++..|.+.....++.....+.+... .....+..+
T Consensus 19 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~ 98 (164)
T 3ro3_A 19 HYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNT 98 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 3567888888888888887777777777777778888888888899988888888888877766433221 223444444
Q ss_pred HHhCCCCCCCCCCCCCchHHHHHHHHhhhhhhhhhhhHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHhcCCCcChHhh
Q 024660 103 YELFPQIPVPHNLEDDDDLHELTEALGAAKLRVEGCSSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDMARV 182 (264)
Q Consensus 103 ~~~~p~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~~~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~~~~~e~~~~~~~~A 182 (264)
+..... .++-..++++|+......+. +...+..+..+|.+++..+ ++.+|
T Consensus 99 ~~~~~~--------------------------~~~A~~~~~~a~~~~~~~~~-~~~~~~~~~~la~~~~~~g---~~~~A 148 (164)
T 3ro3_A 99 YTLLQD--------------------------YEKAIDYHLKHLAIAQELKD-RIGEGRACWSLGNAYTALG---NHDQA 148 (164)
T ss_dssp HHHTTC--------------------------HHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHT---CHHHH
T ss_pred HHHHhh--------------------------HHHHHHHHHHHHHHHHHccc-hHhHHHHHHHHHHHHHHcc---CHHHH
Confidence 443321 12226778888888776542 3455678999999999999 99999
Q ss_pred hhhhh
Q 024660 183 SFHFV 187 (264)
Q Consensus 183 ~~Hfl 187 (264)
..++-
T Consensus 149 ~~~~~ 153 (164)
T 3ro3_A 149 MHFAE 153 (164)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88874
No 8
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.43 E-value=0.049 Score=47.23 Aligned_cols=194 Identities=13% Similarity=0.024 Sum_probs=106.5
Q ss_pred ChhHHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhhCCCCCC-hhHHHHHHHHHHhCC
Q 024660 29 NFYGAQQMYKSISARYVAAQRYSEALDLLHAGACLQLKNNQLTCGAELAVSFVEALVKGKVAYD-NENLDRVRKIYELFP 107 (264)
Q Consensus 29 ~~YEAhQ~~RTl~~Ry~~~kk~~eAieLL~~GA~~ll~~~Q~~sa~DL~~llvevl~~~~~~~~-~~~~~rl~~l~~~~p 107 (264)
+|=||...|.-...-|..+|+|++|++.........-+.|.....+..-.-+-.+|...|-.-. .+.+.+.+++.....
T Consensus 32 ~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g 111 (292)
T 1qqe_A 32 KFEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRG 111 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcC
Confidence 3778888888888888889999999988877776666665544444444444455554432111 122333344333221
Q ss_pred CCCCCCCCCCCchHHHHHHHHhhhhhhhhhhhHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHhcCCCcChHhhhhhhh
Q 024660 108 QIPVPHNLEDDDDLHELTEALGAAKLRVEGCSSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDMARVSFHFV 187 (264)
Q Consensus 108 ~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~~~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl 187 (264)
.+. ....-...+-..-...-...++-..+.++|+.+....+. +.+.+..+..+|.+|.+.| +|.+|..+|-
T Consensus 112 ---~~~--~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~-~~~~~~~~~~lg~~~~~~g---~~~~A~~~~~ 182 (292)
T 1qqe_A 112 ---QFR--RGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQS-VALSNKCFIKCADLKALDG---QYIEASDIYS 182 (292)
T ss_dssp ---CHH--HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred ---CHH--HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHhC---CHHHHHHHHH
Confidence 000 000001111111110001122336788899998875432 2233567889999999999 9999987764
Q ss_pred cCCChHHHHHHHHHHHhhcCC---CchHHHHHHHHHHHHhcCChhHHHHHHHHHHHHh
Q 024660 188 RGNNPEKFASTIVNFMGKCYP---GEDDLAVARAILMYLSLGNMKDANYIMDEVKKQV 242 (264)
Q Consensus 188 ~~~d~~~~a~~L~ew~~~~~~---~e~dlfiaRaVL~~L~l~n~~~A~~~~~~f~~~~ 242 (264)
..- +....... +..+ +..+..+.|+.+|+...|...++.+++..
T Consensus 183 ~al----------~~~~~~~~~~~~~~~-~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 229 (292)
T 1qqe_A 183 KLI----------KSSMGNRLSQWSLKD-YFLKKGLCQLAATDAVAAARTLQEGQSED 229 (292)
T ss_dssp HHH----------HTTSSCTTTGGGHHH-HHHHHHHHHHHTTCHHHHHHHHHGGGCC-
T ss_pred HHH----------HHHhcCCcccHHHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 311 11000000 1112 34455567788888888888887766533
No 9
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=96.21 E-value=0.18 Score=41.15 Aligned_cols=185 Identities=13% Similarity=0.067 Sum_probs=115.3
Q ss_pred HhccCChhHHHHHHHHHHHHHHhhh--CHHHHHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhhCCC---CCChhHHHH
Q 024660 24 IVNEGNFYGAQQMYKSISARYVAAQ--RYSEALDLLHAGACLQLKNNQLTCGAELAVSFVEALVKGKV---AYDNENLDR 98 (264)
Q Consensus 24 ~i~~G~~YEAhQ~~RTl~~Ry~~~k--k~~eAieLL~~GA~~ll~~~Q~~sa~DL~~llvevl~~~~~---~~~~~~~~r 98 (264)
....|++-+|.++|+.....+.+.. ....-.++++.=+..+...|++..|.+...-.++...+..- |........
T Consensus 11 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 90 (283)
T 3edt_B 11 SSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNN 90 (283)
T ss_dssp --CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 4567888888888888777665543 44556677777778888888988888888877777655421 222234455
Q ss_pred HHHHHHhCCCCCCCCCCCCCchHHHHHHHHhhhhhhhhhhhHHHHHHHHhhhhcCCC-CCCCHHHHHHHHHHHHhcCCCc
Q 024660 99 VRKIYELFPQIPVPHNLEDDDDLHELTEALGAAKLRVEGCSSFLKAAIKWSIEFGAP-KTGSPELHVMLAEYLYSESPEL 177 (264)
Q Consensus 99 l~~l~~~~p~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~~~~fl~~ai~WS~~~g~~-~~Gdp~LH~~la~~~~~e~~~~ 177 (264)
+..++..... .++-..+..+|+....+.++. ....+..+..+|.+|+..+
T Consensus 91 l~~~~~~~g~--------------------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g--- 141 (283)
T 3edt_B 91 LAVLYGKRGK--------------------------YKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQG--- 141 (283)
T ss_dssp HHHHHHTTTC--------------------------HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTT---
T ss_pred HHHHHHHhcc--------------------------HHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcC---
Confidence 6665553321 112267777888776654321 2345678899999999999
Q ss_pred ChHhhhhhhhcCCChHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhh
Q 024660 178 DMARVSFHFVRGNNPEKFASTIVNFMGKCYPGEDDLAVARAILMYLSLGNMKDANYIMDEVKKQVEN 244 (264)
Q Consensus 178 ~~~~A~~Hfl~~~d~~~~a~~L~ew~~~~~~~e~dlfiaRaVL~~L~l~n~~~A~~~~~~f~~~~~~ 244 (264)
++.+|..+|-.+-+ +.-.......|.....+. .....|...++...|...++...+..+.
T Consensus 142 ~~~~A~~~~~~al~------~~~~~~~~~~~~~~~~~~-~la~~~~~~g~~~~A~~~~~~~l~~~~~ 201 (283)
T 3edt_B 142 KAEEVEYYYRRALE------IYATRLGPDDPNVAKTKN-NLASCYLKQGKYQDAETLYKEILTRAHE 201 (283)
T ss_dssp CHHHHHHHHHHHHH------HHHHHSCTTCHHHHHHHH-HHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH------HHHHhcCCCCHHHHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 99999988743211 111110011112222232 3334566789999999999998876554
No 10
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=95.79 E-value=0.68 Score=38.39 Aligned_cols=49 Identities=6% Similarity=0.115 Sum_probs=35.7
Q ss_pred hhhhHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHhcCCCcChHhhhhhhhc
Q 024660 136 EGCSSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDMARVSFHFVR 188 (264)
Q Consensus 136 ~~~~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~ 188 (264)
+....+.++++......+. +...+..+..+|.+++..+ ++.+|..+|-.
T Consensus 160 ~~A~~~~~~a~~~~~~~~~-~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~ 208 (338)
T 3ro2_A 160 QAAVDLYEENLSLVTALGD-RAAQGRAFGNLGNTHYLLG---NFRDAVIAHEQ 208 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHT---CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHhC---CHHHHHHHHHH
Confidence 3346677777777665532 3345668899999999999 99988888754
No 11
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=95.67 E-value=0.34 Score=39.51 Aligned_cols=151 Identities=13% Similarity=0.082 Sum_probs=74.5
Q ss_pred hHHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHc--CCcccHHHHHHHHHHHHhhCCCCCC-hhHHHHHHHHHHhCC
Q 024660 31 YGAQQMYKSISARYVAAQRYSEALDLLHAGACLQLKN--NQLTCGAELAVSFVEALVKGKVAYD-NENLDRVRKIYELFP 107 (264)
Q Consensus 31 YEAhQ~~RTl~~Ry~~~kk~~eAieLL~~GA~~ll~~--~Q~~sa~DL~~llvevl~~~~~~~~-~~~~~rl~~l~~~~p 107 (264)
-.--..+..+..=|...++|++|++.+.......-+. +....-++....+-.+|...+-.-. .+.+.+..++.....
T Consensus 40 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 119 (283)
T 3edt_B 40 PDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL 119 (283)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHc
Confidence 3444566667777777788888877776655443332 2222223333334444444432111 122333333333221
Q ss_pred CCCCCCCCCCCchHHHHHHHHhhhhhhhhhhhHHHHHHHHhhhhcC-CCCCCCHHHHHHHHHHHHhcCCCcChHhhhhhh
Q 024660 108 QIPVPHNLEDDDDLHELTEALGAAKLRVEGCSSFLKAAIKWSIEFG-APKTGSPELHVMLAEYLYSESPELDMARVSFHF 186 (264)
Q Consensus 108 ~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~~~~fl~~ai~WS~~~g-~~~~Gdp~LH~~la~~~~~e~~~~~~~~A~~Hf 186 (264)
....+. ...-...+...- ......++-..+++++++...... ......+..+..+|.+|...| ++.+|..+|
T Consensus 120 ~~~~~~---~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~ 192 (283)
T 3edt_B 120 GKFHPD---VAKQLNNLALLC-QNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQG---KYQDAETLY 192 (283)
T ss_dssp CTTCHH---HHHHHHHHHHHH-HTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHT---CHHHHHHHH
T ss_pred CCCChH---HHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcC---CHHHHHHHH
Confidence 100000 000000111100 011112233677888888765542 212234578889999999999 999999888
Q ss_pred hc
Q 024660 187 VR 188 (264)
Q Consensus 187 l~ 188 (264)
-.
T Consensus 193 ~~ 194 (283)
T 3edt_B 193 KE 194 (283)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 12
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=95.66 E-value=0.77 Score=38.08 Aligned_cols=195 Identities=14% Similarity=0.158 Sum_probs=123.3
Q ss_pred CCCchHHHHHH-HHHHhccCChhHHHHHHHHHHHHHHhhh--CHHHHHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhh
Q 024660 10 ALPPAQENIDK-LEKIVNEGNFYGAQQMYKSISARYVAAQ--RYSEALDLLHAGACLQLKNNQLTCGAELAVSFVEALVK 86 (264)
Q Consensus 10 ~~~~~~r~l~r-l~~~i~~G~~YEAhQ~~RTl~~Ry~~~k--k~~eAieLL~~GA~~ll~~~Q~~sa~DL~~llvevl~~ 86 (264)
+.|...+++.. -......|+|=+|.+.++.........+ ........++.=+..+...|++..|.+.....++.+.+
T Consensus 22 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 101 (311)
T 3nf1_A 22 EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREK 101 (311)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 34444444333 3455778899999999988887776665 55566677777778888899999998888887777665
Q ss_pred C--CC-CCChhHHHHHHHHHHhCCCCCCCCCCCCCchHHHHHHHHhhhhhhhhhhhHHHHHHHHhhhhc-CCCCCCCHHH
Q 024660 87 G--KV-AYDNENLDRVRKIYELFPQIPVPHNLEDDDDLHELTEALGAAKLRVEGCSSFLKAAIKWSIEF-GAPKTGSPEL 162 (264)
Q Consensus 87 ~--~~-~~~~~~~~rl~~l~~~~p~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~~~~fl~~ai~WS~~~-g~~~~Gdp~L 162 (264)
. +. +........+..++..... .++-..++.++++..... +......+..
T Consensus 102 ~~~~~~~~~~~~~~~l~~~~~~~g~--------------------------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 155 (311)
T 3nf1_A 102 TLGKDHPAVAATLNNLAVLYGKRGK--------------------------YKEAEPLCKRALEIREKVLGKDHPDVAKQ 155 (311)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHTTTC--------------------------HHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HhCCCChHHHHHHHHHHHHHHHcCc--------------------------HHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 4 11 1122344555555553321 112266777777776554 2223345677
Q ss_pred HHHHHHHHHhcCCCcChHhhhhhhhcCCChHHHHHHHHHHHhhc----CCCchHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 024660 163 HVMLAEYLYSESPELDMARVSFHFVRGNNPEKFASTIVNFMGKC----YPGEDDLAVARAILMYLSLGNMKDANYIMDEV 238 (264)
Q Consensus 163 H~~la~~~~~e~~~~~~~~A~~Hfl~~~d~~~~a~~L~ew~~~~----~~~e~dlfiaRaVL~~L~l~n~~~A~~~~~~f 238 (264)
+..+|.+++..+ ++.+|..+|-.+ ++...+. .+..... .......|+..++...|...+...
T Consensus 156 ~~~la~~~~~~~---~~~~A~~~~~~a----------~~~~~~~~~~~~~~~~~~-~~~la~~~~~~g~~~~A~~~~~~a 221 (311)
T 3nf1_A 156 LNNLALLCQNQG---KYEEVEYYYQRA----------LEIYQTKLGPDDPNVAKT-KNNLASCYLKQGKFKQAETLYKEI 221 (311)
T ss_dssp HHHHHHHHHTTT---CHHHHHHHHHHH----------HHHHHHTSCTTCHHHHHH-HHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHH----------HHHHHHHhCCCCHHHHHH-HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 889999999999 999998887432 1111111 1122222 223334567789999999999988
Q ss_pred HHHhhh
Q 024660 239 KKQVEN 244 (264)
Q Consensus 239 ~~~~~~ 244 (264)
.+..+.
T Consensus 222 l~~~~~ 227 (311)
T 3nf1_A 222 LTRAHE 227 (311)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 876554
No 13
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=95.44 E-value=0.097 Score=41.22 Aligned_cols=148 Identities=11% Similarity=0.051 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhhCCCCCC-hhHHHHHHHHHHhCCCCC
Q 024660 32 GAQQMYKSISARYVAAQRYSEALDLLHAGACLQLKNNQLTCGAELAVSFVEALVKGKVAYD-NENLDRVRKIYELFPQIP 110 (264)
Q Consensus 32 EAhQ~~RTl~~Ry~~~kk~~eAieLL~~GA~~ll~~~Q~~sa~DL~~llvevl~~~~~~~~-~~~~~rl~~l~~~~p~~~ 110 (264)
.--..+..+..=|..+++|++|++.+.+.....-+.+....-+.....+-.+|...+-.-. .+.+.+..++....+...
T Consensus 24 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 103 (203)
T 3gw4_A 24 TASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDP 103 (203)
T ss_dssp THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccH
Confidence 3345556666667777778777777776665555555544444444444455555442111 233445555554443110
Q ss_pred CCCCCCCCchHHHHHHHHhhhhhhhhhhhHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHhcCCCcChHhhhhhhhc
Q 024660 111 VPHNLEDDDDLHELTEALGAAKLRVEGCSSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDMARVSFHFVR 188 (264)
Q Consensus 111 ~~r~l~~~~~~~~~~~~~~~~~~~~~~~~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~ 188 (264)
... ..-...+...... ....++-...+.+|+......+. +......+..+|.+++..| ++.+|..+|-.
T Consensus 104 ~~~----~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~ 172 (203)
T 3gw4_A 104 LAA----SANAYEVATVALH-FGDLAGARQEYEKSLVYAQQADD-QVAIACAFRGLGDLAQQEK---NLLEAQQHWLR 172 (203)
T ss_dssp HHH----HHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHH----HHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHCc---CHHHHHHHHHH
Confidence 000 0000111111111 11223336778888888765432 2333445788999999999 99988877743
No 14
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=95.35 E-value=0.99 Score=37.39 Aligned_cols=49 Identities=8% Similarity=0.079 Sum_probs=36.3
Q ss_pred hhHHHHHHHHhhhhc-CCCCCCCHHHHHHHHHHHHhcCCCcChHhhhhhhhcC
Q 024660 138 CSSFLKAAIKWSIEF-GAPKTGSPELHVMLAEYLYSESPELDMARVSFHFVRG 189 (264)
Q Consensus 138 ~~~fl~~ai~WS~~~-g~~~~Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~~ 189 (264)
-..++++++....+. +......+..+..+|.+|...| ++.+|..+|-.+
T Consensus 172 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~a 221 (311)
T 3nf1_A 172 VEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQG---KFKQAETLYKEI 221 (311)
T ss_dssp HHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHT---CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHH
Confidence 367778888876654 2223345678999999999999 999999988643
No 15
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=95.17 E-value=1.2 Score=39.22 Aligned_cols=90 Identities=11% Similarity=-0.032 Sum_probs=54.2
Q ss_pred hHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHhcCCCcChHhhhhhhhcCCChHHHHHHHHHHHh-hcC-CCchHHHHH
Q 024660 139 SSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDMARVSFHFVRGNNPEKFASTIVNFMG-KCY-PGEDDLAVA 216 (264)
Q Consensus 139 ~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~~~d~~~~a~~L~ew~~-~~~-~~e~dlfia 216 (264)
....++|+.-..+.++ +.+....+..+|.+|...| ++.+|..||-.+-. ... .+. |.....+..
T Consensus 204 ~~~~~~al~~~~~~~~-~~~~~~~~~~lg~~y~~~g---~~~~A~~~~~~al~----------~~~~~~~~~~~~~~~~~ 269 (383)
T 3ulq_A 204 ISHFQKAYSMAEAEKQ-PQLMGRTLYNIGLCKNSQS---QYEDAIPYFKRAIA----------VFEESNILPSLPQAYFL 269 (383)
T ss_dssp HHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH----------HHHHTTCGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC-hHHHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHH----------HHHhhccchhHHHHHHH
Confidence 6777888888776532 3344467888999999999 99999998854211 111 122 222222222
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHHhh
Q 024660 217 RAILMYLSLGNMKDANYIMDEVKKQVE 243 (264)
Q Consensus 217 RaVL~~L~l~n~~~A~~~~~~f~~~~~ 243 (264)
. -..|...|+...|...++.-.+..+
T Consensus 270 l-~~~~~~~g~~~~A~~~~~~al~~~~ 295 (383)
T 3ulq_A 270 I-TQIHYKLGKIDKAHEYHSKGMAYSQ 295 (383)
T ss_dssp H-HHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred H-HHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 2 2234556777777777766665443
No 16
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=95.12 E-value=0.41 Score=42.11 Aligned_cols=91 Identities=10% Similarity=-0.009 Sum_probs=59.6
Q ss_pred hHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHhcCCCcChHhhhhhhhcCCChHHHHHHHHHHHhhcCC-CchHHHHHH
Q 024660 139 SSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDMARVSFHFVRGNNPEKFASTIVNFMGKCYP-GEDDLAVAR 217 (264)
Q Consensus 139 ~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~~~d~~~~a~~L~ew~~~~~~-~e~dlfiaR 217 (264)
...+++|+.-....+. ..+.+..+..+|.+|+..| ++.+|..+|-.+-. + .-..+.+ .....+..
T Consensus 283 ~~~~~~al~~~~~~~~-~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~------~---~~~~~~~~~~~~~~~~- 348 (411)
T 4a1s_A 283 AEHYKRTLALAVELGE-REVEAQSCYSLGNTYTLLH---EFNTAIEYHNRHLA------I---AQELGDRIGEARACWS- 348 (411)
T ss_dssp HHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH------H---HHHHTCHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHH------H---HHHCCChHHHHHHHHH-
Confidence 6777788877776532 3455788999999999999 99999988743211 1 1111111 22223333
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHHhh
Q 024660 218 AILMYLSLGNMKDANYIMDEVKKQVE 243 (264)
Q Consensus 218 aVL~~L~l~n~~~A~~~~~~f~~~~~ 243 (264)
....|...|+...|...+....+...
T Consensus 349 la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 349 LGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 33456778999999999988887554
No 17
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=95.01 E-value=0.59 Score=40.45 Aligned_cols=91 Identities=12% Similarity=0.047 Sum_probs=56.5
Q ss_pred hhHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHhcCCCcChHhhhhhhhcCCChHHHHHHHHHHHh-hcCC-CchHHHH
Q 024660 138 CSSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDMARVSFHFVRGNNPEKFASTIVNFMG-KCYP-GEDDLAV 215 (264)
Q Consensus 138 ~~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~~~d~~~~a~~L~ew~~-~~~~-~e~dlfi 215 (264)
-..++++|+......+. +...+..+..+|.+|...| ++.+|..+|-.+-. ... .+.+ .....+.
T Consensus 246 A~~~~~~al~~~~~~~~-~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~a~~----------~~~~~~~~~~~~~~~~ 311 (406)
T 3sf4_A 246 ASEYYKKTLLLARQLKD-RAVEAQSCYSLGNTYTLLQ---DYEKAIDYHLKHLA----------IAQELNDRIGEGRACW 311 (406)
T ss_dssp HHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH----------HHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcC-chHHHHHHHHHHHHHHHhC---cHHHHHHHHHHHHH----------HHHhcCCcHHHHHHHH
Confidence 36777888887766532 3444678889999999999 99999988754211 111 1111 1122222
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHHhh
Q 024660 216 ARAILMYLSLGNMKDANYIMDEVKKQVE 243 (264)
Q Consensus 216 aRaVL~~L~l~n~~~A~~~~~~f~~~~~ 243 (264)
.. ...|...|+...|...+....+..+
T Consensus 312 ~l-a~~~~~~g~~~~A~~~~~~al~~~~ 338 (406)
T 3sf4_A 312 SL-GNAYTALGNHDQAMHFAEKHLEISR 338 (406)
T ss_dssp HH-HHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 22 2345667888888888777776544
No 18
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=94.92 E-value=1.1 Score=38.81 Aligned_cols=131 Identities=7% Similarity=0.014 Sum_probs=88.0
Q ss_pred HHHHHHHHHHhccCChhHHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhhCCCCCCh-
Q 024660 15 QENIDKLEKIVNEGNFYGAQQMYKSISARYVAAQRYSEALDLLHAGACLQLKNNQLTCGAELAVSFVEALVKGKVAYDN- 93 (264)
Q Consensus 15 ~r~l~rl~~~i~~G~~YEAhQ~~RTl~~Ry~~~kk~~eAieLL~~GA~~ll~~~Q~~sa~DL~~llvevl~~~~~~~~~- 93 (264)
.....+=......|+|=+|.+.|+..... ..+......++++.=+..+...|++..|.+.....++.....+.+...
T Consensus 10 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 10 LELALEGERLCKSGDCRAGVSFFEAAVQV--GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 33445556678889999999998887765 334455556677777788888899999988888888777766543322
Q ss_pred hHHHHHHHHHHhCCCCCCCCCCCCCchHHHHHHHHhhhhhhhhhhhHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHhc
Q 024660 94 ENLDRVRKIYELFPQIPVPHNLEDDDDLHELTEALGAAKLRVEGCSSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSE 173 (264)
Q Consensus 94 ~~~~rl~~l~~~~p~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~~~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~~~~~e 173 (264)
.....+..++..... .++-..+..+|+....+.+. +.+.+..+..+|.+|+..
T Consensus 88 ~~~~~la~~~~~~g~--------------------------~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~l~~~~~~~ 140 (406)
T 3sf4_A 88 KASGNLGNTLKVLGN--------------------------FDEAIVCCQRHLDISRELND-KVGEARALYNLGNVYHAK 140 (406)
T ss_dssp HHHHHHHHHHHHTTC--------------------------HHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCC--------------------------HHHHHHHHHHHHHHHHhccc-ccchHHHHHHHHHHHHHc
Confidence 233455555544321 11226677777877766532 344567899999999999
Q ss_pred C
Q 024660 174 S 174 (264)
Q Consensus 174 ~ 174 (264)
+
T Consensus 141 g 141 (406)
T 3sf4_A 141 G 141 (406)
T ss_dssp H
T ss_pred C
Confidence 9
No 19
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=94.82 E-value=0.15 Score=42.49 Aligned_cols=46 Identities=7% Similarity=0.024 Sum_probs=34.8
Q ss_pred hHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHhcCCCcChHhhhhhhhc
Q 024660 139 SSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDMARVSFHFVR 188 (264)
Q Consensus 139 ~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~ 188 (264)
..++++|+.-....+. +...+..+..+|.+|.+.| ++.+|..+|-.
T Consensus 283 ~~~~~~a~~~~~~~~~-~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~ 328 (338)
T 3ro2_A 283 IDYHLKHLAIAQELKD-RIGEGRACWSLGNAYTALG---NHDQAMHFAEK 328 (338)
T ss_dssp HHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHT---CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHcC---ChHHHHHHHHH
Confidence 6677777777765542 3445678889999999999 99999888753
No 20
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=94.68 E-value=1.4 Score=37.52 Aligned_cols=47 Identities=11% Similarity=0.098 Sum_probs=34.2
Q ss_pred hHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHhcCCCcChHhhhhhhhc
Q 024660 139 SSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDMARVSFHFVR 188 (264)
Q Consensus 139 ~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~ 188 (264)
..+.++|++-....+..+.-.+..+..+|.+|.+.+ +|.+|..+|-.
T Consensus 175 ~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~---~y~~Al~~~~k 221 (293)
T 2qfc_A 175 IDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDS---RYEESLYQVNK 221 (293)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHh---hHHHHHHHHHH
Confidence 677888887766543211112367889999999999 99999998854
No 21
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=94.62 E-value=0.3 Score=42.13 Aligned_cols=148 Identities=13% Similarity=0.064 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhhC-CCCCChhHHHHHHHHHHhCCCCCCC
Q 024660 34 QQMYKSISARYVAAQRYSEALDLLHAGACLQLKNNQLTCGAELAVSFVEALVKG-KVAYDNENLDRVRKIYELFPQIPVP 112 (264)
Q Consensus 34 hQ~~RTl~~Ry~~~kk~~eAieLL~~GA~~ll~~~Q~~sa~DL~~llvevl~~~-~~~~~~~~~~rl~~l~~~~p~~~~~ 112 (264)
-..|.-+..=|...|+|++|++.+.......-+.|....+++....+-.+|... +-. ++.+.-+.+-+..+|....+
T Consensus 77 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~--~~A~~~~~~Al~~~~~~~~~ 154 (292)
T 1qqe_A 77 GNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDY--AKAIDCYELAGEWYAQDQSV 154 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCH--HHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCH--HHHHHHHHHHHHHHHhCCCh
Confidence 333444444456678888888888777777777777666666655666667663 321 22333333333333321110
Q ss_pred CCCCCCchHHHHHHHHhhhhhhhhhhhHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHhcCCCcChHhhhhhhhcC
Q 024660 113 HNLEDDDDLHELTEALGAAKLRVEGCSSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDMARVSFHFVRG 189 (264)
Q Consensus 113 r~l~~~~~~~~~~~~~~~~~~~~~~~~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~~ 189 (264)
.. ..+-...+-.. .....+.++-....++++......+..+++....+..+|.++...| ++.+|..+|-..
T Consensus 155 ~~--~~~~~~~lg~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g---~~~~A~~~~~~a 225 (292)
T 1qqe_A 155 AL--SNKCFIKCADL-KALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAAT---DAVAAARTLQEG 225 (292)
T ss_dssp HH--HHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTT---CHHHHHHHHHGG
T ss_pred HH--HHHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHH
Confidence 00 00000111111 1111122333556667776654433222344567888999999999 999999998764
No 22
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=94.52 E-value=0.97 Score=33.09 Aligned_cols=156 Identities=9% Similarity=0.025 Sum_probs=87.7
Q ss_pred CChhHHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhhCCCCCChhHHHHHHHHHHhCC
Q 024660 28 GNFYGAQQMYKSISARYVAAQRYSEALDLLHAGACLQLKNNQLTCGAELAVSFVEALVKGKVAYDNENLDRVRKIYELFP 107 (264)
Q Consensus 28 G~~YEAhQ~~RTl~~Ry~~~kk~~eAieLL~~GA~~ll~~~Q~~sa~DL~~llvevl~~~~~~~~~~~~~rl~~l~~~~p 107 (264)
|+...--..+..+..=|...++|++|++.+.+.....-+.+....-+. ....+..++....
T Consensus 3 ~d~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~-------------------~~~~l~~~~~~~g 63 (164)
T 3ro3_A 3 GSRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERI-------------------AYSNLGNAYIFLG 63 (164)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH-------------------HHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHH-------------------HHHHHHHHHHHcC
Confidence 444445556667777777788888888877766554443332211111 2223333333221
Q ss_pred CCCCCCCCCCCchHHHHHHHHhhhhhhhhhhhHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHhcCCCcChHhhhhhhh
Q 024660 108 QIPVPHNLEDDDDLHELTEALGAAKLRVEGCSSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDMARVSFHFV 187 (264)
Q Consensus 108 ~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~~~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl 187 (264)
. .++...+.++|+......+. +...+..+..+|.+++..+ ++.+|..+|-
T Consensus 64 ~--------------------------~~~A~~~~~~a~~~~~~~~~-~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~ 113 (164)
T 3ro3_A 64 E--------------------------FETASEYYKKTLLLARQLKD-RAVEAQSCYSLGNTYTLLQ---DYEKAIDYHL 113 (164)
T ss_dssp C--------------------------HHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred C--------------------------HHHHHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHHHHh---hHHHHHHHHH
Confidence 1 11226677777777765432 2334567888999999999 9999988874
Q ss_pred cCCChHHHHHHHHHHHh-hcCCCchHHHHHHHHHHHHhcCChhHHHHHHHHHHHHh
Q 024660 188 RGNNPEKFASTIVNFMG-KCYPGEDDLAVARAILMYLSLGNMKDANYIMDEVKKQV 242 (264)
Q Consensus 188 ~~~d~~~~a~~L~ew~~-~~~~~e~dlfiaRaVL~~L~l~n~~~A~~~~~~f~~~~ 242 (264)
.+- +... .+.+.............|+..++...|...++...+..
T Consensus 114 ~a~----------~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 114 KHL----------AIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHH----------HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHH----------HHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 321 1111 11111111122223345667899999999888877544
No 23
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=94.42 E-value=0.23 Score=43.79 Aligned_cols=146 Identities=8% Similarity=0.003 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhhCCCCCC-hhHHHHHHHHHHhCCCCCCCC
Q 024660 35 QMYKSISARYVAAQRYSEALDLLHAGACLQLKNNQLTCGAELAVSFVEALVKGKVAYD-NENLDRVRKIYELFPQIPVPH 113 (264)
Q Consensus 35 Q~~RTl~~Ry~~~kk~~eAieLL~~GA~~ll~~~Q~~sa~DL~~llvevl~~~~~~~~-~~~~~rl~~l~~~~p~~~~~r 113 (264)
..+..+..=|...++|++|++.+.......-+.+....-+.....+..+|...+-.-. .+.+.+..++....+ ...
T Consensus 224 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~ 300 (411)
T 4a1s_A 224 RACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELG---ERE 300 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTT---CHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcC---CHH
Confidence 3445555556777888888877776665555544443334444444455554442110 122233333332221 000
Q ss_pred CCCCCchHHHHHHHHhhhhhhhhhhhHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHhcCCCcChHhhhhhhhcCC
Q 024660 114 NLEDDDDLHELTEALGAAKLRVEGCSSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDMARVSFHFVRGN 190 (264)
Q Consensus 114 ~l~~~~~~~~~~~~~~~~~~~~~~~~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~~~ 190 (264)
. ...-...+-..-. .....++-..++++|+......+. ..+.+..+..+|.+|...| ++.+|..+|-..-
T Consensus 301 ~--~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al 370 (411)
T 4a1s_A 301 V--EAQSCYSLGNTYT-LLHEFNTAIEYHNRHLAIAQELGD-RIGEARACWSLGNAHSAIG---GHERALKYAEQHL 370 (411)
T ss_dssp H--HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred H--HHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHCCC-hHHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHH
Confidence 0 0000000011000 111122336778888888776643 3456788999999999999 9999998886543
No 24
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=94.37 E-value=1.3 Score=35.41 Aligned_cols=67 Identities=16% Similarity=0.139 Sum_probs=37.6
Q ss_pred CHHHHHHHHHHHHhcCCCcChHhhhhhhhcCCChHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 024660 159 SPELHVMLAEYLYSESPELDMARVSFHFVRGNNPEKFASTIVNFMGKCYPGEDDLAVARAILMYLSLGNMKDANYIMDEV 238 (264)
Q Consensus 159 dp~LH~~la~~~~~e~~~~~~~~A~~Hfl~~~d~~~~a~~L~ew~~~~~~~e~dlfiaRaVL~~L~l~n~~~A~~~~~~f 238 (264)
++..+..+|.++.+.+ ++.+|..+|-.. . +-.|...+.+...+ ..|...++...|...++..
T Consensus 158 ~~~~~~~l~~~~~~~~---~~~~A~~~~~~~-------------~-~~~~~~~~~~~~la-~~~~~~~~~~~A~~~~~~~ 219 (243)
T 2q7f_A 158 DTEARFQFGMCLANEG---MLDEALSQFAAV-------------T-EQDPGHADAFYNAG-VTYAYKENREKALEMLDKA 219 (243)
T ss_dssp CHHHHHHHHHHHHHHT---CCHHHHHHHHHH-------------H-HHCTTCHHHHHHHH-HHHHHTTCTTHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcC---CHHHHHHHHHHH-------------H-HhCcccHHHHHHHH-HHHHHccCHHHHHHHHHHH
Confidence 4455555555555555 555554433211 0 11234444444433 4467789999999999888
Q ss_pred HHHhh
Q 024660 239 KKQVE 243 (264)
Q Consensus 239 ~~~~~ 243 (264)
.+..|
T Consensus 220 ~~~~p 224 (243)
T 2q7f_A 220 IDIQP 224 (243)
T ss_dssp HHHCT
T ss_pred HccCc
Confidence 87543
No 25
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=94.30 E-value=1.7 Score=35.12 Aligned_cols=83 Identities=11% Similarity=0.053 Sum_probs=45.2
Q ss_pred CCCHHHHHHHHHHHHhcCCCcChHhhhhhhhcC-----CChH---HHHHHHHH---------HHh---hcCCCchHHHHH
Q 024660 157 TGSPELHVMLAEYLYSESPELDMARVSFHFVRG-----NNPE---KFASTIVN---------FMG---KCYPGEDDLAVA 216 (264)
Q Consensus 157 ~Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~~-----~d~~---~~a~~L~e---------w~~---~~~~~e~dlfia 216 (264)
.+++..+..+|.++...+ ++.+|..+|-.. +++. .++.++.. ++. +..|...+.+.
T Consensus 138 ~~~~~~~~~la~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~- 213 (252)
T 2ho1_A 138 PERSRVFENLGLVSLQMK---KPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLL- 213 (252)
T ss_dssp TTHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHH-
T ss_pred cccHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHH-
Confidence 355667777777777777 777766666432 1222 11111111 000 12233444333
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHHhh
Q 024660 217 RAILMYLSLGNMKDANYIMDEVKKQVE 243 (264)
Q Consensus 217 RaVL~~L~l~n~~~A~~~~~~f~~~~~ 243 (264)
.....|...++...|...+....+..|
T Consensus 214 ~~~~~~~~~g~~~~A~~~~~~~~~~~p 240 (252)
T 2ho1_A 214 LGIRLAKVFEDRDTAASYGLQLKRLYP 240 (252)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCC
Confidence 333445678999999998888876543
No 26
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=94.25 E-value=1.5 Score=34.07 Aligned_cols=69 Identities=12% Similarity=-0.001 Sum_probs=52.7
Q ss_pred CCHHHHHHHHHHHHhcCCCcChHhhhhhhhcCCChHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhcCChhHHHHHHHH
Q 024660 158 GSPELHVMLAEYLYSESPELDMARVSFHFVRGNNPEKFASTIVNFMGKCYPGEDDLAVARAILMYLSLGNMKDANYIMDE 237 (264)
Q Consensus 158 Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~~~d~~~~a~~L~ew~~~~~~~e~dlfiaRaVL~~L~l~n~~~A~~~~~~ 237 (264)
.++..+..+|.+|.+.| ++.+|..+|-.+ -+-.|...+.+..+|.+ |...|+...|...|+.
T Consensus 105 ~~~~~~~~lg~~~~~~g---~~~~A~~~~~~~--------------l~~~p~~~~~~~~lg~~-~~~~g~~~~A~~~~~~ 166 (184)
T 3vtx_A 105 VYADAYYKLGLVYDSMG---EHDKAIEAYEKT--------------ISIKPGFIRAYQSIGLA-YEGKGLRDEAVKYFKK 166 (184)
T ss_dssp TCHHHHHHHHHHHHHTT---CHHHHHHHHHHH--------------HHHCTTCHHHHHHHHHH-HHHTTCHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhC---CchhHHHHHHHH--------------HHhcchhhhHHHHHHHH-HHHCCCHHHHHHHHHH
Confidence 57899999999999999 999998776321 11245666777777654 6789999999999988
Q ss_pred HHHHhhh
Q 024660 238 VKKQVEN 244 (264)
Q Consensus 238 f~~~~~~ 244 (264)
-++.-|+
T Consensus 167 al~~~p~ 173 (184)
T 3vtx_A 167 ALEKEEK 173 (184)
T ss_dssp HHHTTHH
T ss_pred HHhCCcc
Confidence 8775553
No 27
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=94.00 E-value=3 Score=36.67 Aligned_cols=195 Identities=11% Similarity=0.074 Sum_probs=97.7
Q ss_pred HHHHHHHhhhCHHHHHHHHHHHHHHHHHcCCccc-HHHHHHHHHHHHhhCCCCC-ChhHHHHHHHHHHhCCCCCCCCCCC
Q 024660 39 SISARYVAAQRYSEALDLLHAGACLQLKNNQLTC-GAELAVSFVEALVKGKVAY-DNENLDRVRKIYELFPQIPVPHNLE 116 (264)
Q Consensus 39 Tl~~Ry~~~kk~~eAieLL~~GA~~ll~~~Q~~s-a~DL~~llvevl~~~~~~~-~~~~~~rl~~l~~~~p~~~~~r~l~ 116 (264)
.+..=|...+++++|++.+.++...+-+.+.+.. -+..-..+-.+|...+-.- ..+.+.+..++....+. +...
T Consensus 148 ~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~- 223 (383)
T 3ulq_A 148 KMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQ---PQLM- 223 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---HHHH-
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCC---hHHH-
Confidence 3344456678999999988877766655544211 1222222224444433110 01222333333332210 0000
Q ss_pred CCchHHHHHHHHhhhhhhhhhhhHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHhcCCCcChHhhhhhhhcCC------
Q 024660 117 DDDDLHELTEALGAAKLRVEGCSSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDMARVSFHFVRGN------ 190 (264)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~~~------ 190 (264)
..-...+-..- ......++-..+.++|+......+. +.+.+..+..+|.+|.+.| ++.+|..+|-.+-
T Consensus 224 -~~~~~~lg~~y-~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~~~~ 297 (383)
T 3ulq_A 224 -GRTLYNIGLCK-NSQSQYEDAIPYFKRAIAVFEESNI-LPSLPQAYFLITQIHYKLG---KIDKAHEYHSKGMAYSQKA 297 (383)
T ss_dssp -HHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHH-HHCCCHHHHHHHHHHHHHHHHhhcc-chhHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHHHc
Confidence 00000000000 0011122237788889998876643 2456888999999999999 9999998886432
Q ss_pred -ChHHHHH--HHHHHHh-hcC-----------------CCchHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhh
Q 024660 191 -NPEKFAS--TIVNFMG-KCY-----------------PGEDDLAVARAILMYLSLGNMKDANYIMDEVKKQVEN 244 (264)
Q Consensus 191 -d~~~~a~--~L~ew~~-~~~-----------------~~e~dlfiaRaVL~~L~l~n~~~A~~~~~~f~~~~~~ 244 (264)
++...+. .|...+. .+. +...+ .....---|...|+.+.|...+....+...+
T Consensus 298 ~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~-~~~~la~~y~~~g~~~~A~~~~~~al~~~~~ 371 (383)
T 3ulq_A 298 GDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLED-FAIDVAKYYHERKNFQKASAYFLKVEQVRQL 371 (383)
T ss_dssp TCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHH-HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 3322111 1111111 110 01111 2222334466689999999998888765443
No 28
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=93.97 E-value=1.1 Score=39.73 Aligned_cols=90 Identities=12% Similarity=0.039 Sum_probs=54.6
Q ss_pred hHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHhcCCCcChHhhhhhhhcCCChHHHHHHHHHHHhhcCCCchHHHHHHH
Q 024660 139 SSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDMARVSFHFVRGNNPEKFASTIVNFMGKCYPGEDDLAVARA 218 (264)
Q Consensus 139 ~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~~~d~~~~a~~L~ew~~~~~~~e~dlfiaRa 218 (264)
.....+|+.-..+.+. +.+....+..+|.+|...+ ++.+|..||-.+-+ + .-..+.|.... .....
T Consensus 202 ~~~~~~al~~~~~~~~-~~~~~~~~~~lg~~y~~~~---~~~~A~~~~~~al~------~---~~~~~~~~~~~-~~~~l 267 (378)
T 3q15_A 202 LPHLEAALELAMDIQN-DRFIAISLLNIANSYDRSG---DDQMAVEHFQKAAK------V---SREKVPDLLPK-VLFGL 267 (378)
T ss_dssp HHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHT---CHHHHHHHHHHHHH------H---HHHHCGGGHHH-HHHHH
T ss_pred HHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHH------H---HHhhCChhHHH-HHHHH
Confidence 6777888888776533 2344567888999999999 99999998864321 0 00112222222 22222
Q ss_pred HHHHHhcCChhHHHHHHHHHHHHh
Q 024660 219 ILMYLSLGNMKDANYIMDEVKKQV 242 (264)
Q Consensus 219 VL~~L~l~n~~~A~~~~~~f~~~~ 242 (264)
...|...|+...|...++.-.+..
T Consensus 268 a~~~~~~g~~~~A~~~~~~al~~~ 291 (378)
T 3q15_A 268 SWTLCKAGQTQKAFQFIEEGLDHI 291 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHH
Confidence 233556777777777777666543
No 29
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=93.89 E-value=1.5 Score=32.94 Aligned_cols=80 Identities=15% Similarity=0.087 Sum_probs=53.0
Q ss_pred hHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHhcCCCcChHhhhhhhhcCCChHHHHHHHHHHHhhcCCCchHHHHHHH
Q 024660 139 SSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDMARVSFHFVRGNNPEKFASTIVNFMGKCYPGEDDLAVARA 218 (264)
Q Consensus 139 ~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~~~d~~~~a~~L~ew~~~~~~~e~dlfiaRa 218 (264)
...++++++-. ..++..+..+|.++...+ ++.+|..+|-..- .. .|.....+...
T Consensus 96 ~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~---~~~~A~~~~~~~~-------------~~-~~~~~~~~~~l- 150 (186)
T 3as5_A 96 VPLLIKVAEAN-------PINFNVRFRLGVALDNLG---RFDEAIDSFKIAL-------------GL-RPNEGKVHRAI- 150 (186)
T ss_dssp HHHHHHHHHHC-------TTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-------------HH-CTTCHHHHHHH-
T ss_pred HHHHHHHHhcC-------cHhHHHHHHHHHHHHHcC---cHHHHHHHHHHHH-------------hc-CccchHHHHHH-
Confidence 44555555432 257889999999999999 9988887764221 11 13334444333
Q ss_pred HHHHHhcCChhHHHHHHHHHHHHhh
Q 024660 219 ILMYLSLGNMKDANYIMDEVKKQVE 243 (264)
Q Consensus 219 VL~~L~l~n~~~A~~~~~~f~~~~~ 243 (264)
...|...++.+.|...++...+..|
T Consensus 151 a~~~~~~~~~~~A~~~~~~~~~~~~ 175 (186)
T 3as5_A 151 AFSYEQMGRHEEALPHFKKANELDE 175 (186)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 3345678999999999998887655
No 30
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=93.88 E-value=2 Score=39.72 Aligned_cols=87 Identities=10% Similarity=-0.043 Sum_probs=58.2
Q ss_pred hHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHhcCCCcChHhhhhhhhcCCChHHHHHHHHHHHhhcCCCchHHHHHHH
Q 024660 139 SSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDMARVSFHFVRGNNPEKFASTIVNFMGKCYPGEDDLAVARA 218 (264)
Q Consensus 139 ~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~~~d~~~~a~~L~ew~~~~~~~e~dlfiaRa 218 (264)
..++++++.-..+.+..|...+..+..+|.+|++.| ++.+|...|-.. + .. .|...+.+...+
T Consensus 495 ~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~---------~----~~-~p~~~~~~~~l~ 557 (597)
T 2xpi_A 495 INHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLK---MYDAAIDALNQG---------L----LL-STNDANVHTAIA 557 (597)
T ss_dssp HHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTT---CHHHHHHHHHHH---------H----HH-SSCCHHHHHHHH
T ss_pred HHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhc---CHHHHHHHHHHH---------H----Hh-CCCChHHHHHHH
Confidence 666777777655444333333789999999999999 999988766321 1 11 244445544444
Q ss_pred HHHHHhcCChhHHHHHHHHHHHHhh
Q 024660 219 ILMYLSLGNMKDANYIMDEVKKQVE 243 (264)
Q Consensus 219 VL~~L~l~n~~~A~~~~~~f~~~~~ 243 (264)
. .|...|+.+.|...++...+..|
T Consensus 558 ~-~~~~~g~~~~A~~~~~~~l~~~p 581 (597)
T 2xpi_A 558 L-VYLHKKIPGLAITHLHESLAISP 581 (597)
T ss_dssp H-HHHHTTCHHHHHHHHHHHHHHCT
T ss_pred H-HHHHhCCHHHHHHHHHHHHhcCC
Confidence 3 46778999999999988887543
No 31
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=93.56 E-value=3.1 Score=35.40 Aligned_cols=91 Identities=9% Similarity=0.013 Sum_probs=58.3
Q ss_pred hHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHhcCCCcChHhhhhhhhcCCChHHHHHHHHHHHh-hc-CCCchHHHHH
Q 024660 139 SSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDMARVSFHFVRGNNPEKFASTIVNFMG-KC-YPGEDDLAVA 216 (264)
Q Consensus 139 ~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~~~d~~~~a~~L~ew~~-~~-~~~e~dlfia 216 (264)
..+.++|++-..+.+..+.+.+.++.-+|.+|.+.+ +|.+|..++-.+ ++... .+ .....+++.-
T Consensus 175 ~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~---~y~~A~~~~~~a----------l~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 175 IDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDS---RYEESLYQVNKA----------IEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHH----------HHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHh---HHHHHHHHHHHH----------HHHHHHcCcHHHHHHHHHH
Confidence 667777887666543334455678889999999999 999999887532 22221 12 2234555555
Q ss_pred HHHHHHHhcCC-hhHHHHHHHHHHHHhh
Q 024660 217 RAILMYLSLGN-MKDANYIMDEVKKQVE 243 (264)
Q Consensus 217 RaVL~~L~l~n-~~~A~~~~~~f~~~~~ 243 (264)
.+. .|..+|+ .+.|...+..-.....
T Consensus 242 lg~-~~~~~g~~~~~A~~~~~~Al~i~~ 268 (293)
T 3u3w_A 242 RGE-CLRKLEYEEAEIEDAYKKASFFFD 268 (293)
T ss_dssp HHH-HHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHH-HHHHhCCcHHHHHHHHHHHHHHHH
Confidence 554 4456774 5888888777665443
No 32
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=93.12 E-value=3 Score=34.00 Aligned_cols=62 Identities=23% Similarity=0.246 Sum_probs=26.6
Q ss_pred CCHHHHHHHHHHHHhcCCCcChHhhhhhhhcCCChHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhcCChhHHHHHHHH
Q 024660 158 GSPELHVMLAEYLYSESPELDMARVSFHFVRGNNPEKFASTIVNFMGKCYPGEDDLAVARAILMYLSLGNMKDANYIMDE 237 (264)
Q Consensus 158 Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~~~d~~~~a~~L~ew~~~~~~~e~dlfiaRaVL~~L~l~n~~~A~~~~~~ 237 (264)
.+|+.+..+|.+|...| ++.+|..+|-.. -+-.|...+.+...+. -++..|+...|...++.
T Consensus 149 ~~~~~~~~la~~~~~~g---~~~~A~~~~~~a--------------l~~~P~~~~~~~~la~-~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 149 DTPEIRSALAELYLSMG---RLDEALAQYAKA--------------LEQAPKDLDLRVRYAS-ALLLKGKAEEAARAAAL 210 (217)
T ss_dssp CCHHHHHHHHHHHHHHT---CHHHHHHHHHHH--------------HHHSTTCHHHHHHHHH-HHTC-------------
T ss_pred cchHHHHHHHHHHHHcC---CHHHHHHHHHHH--------------HHhCCCChHHHHHHHH-HHHHccCHHHHHHHHHH
Confidence 45677777777777777 666666554211 1123445555444444 34556666666655543
No 33
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=93.02 E-value=2.8 Score=33.45 Aligned_cols=200 Identities=11% Similarity=0.006 Sum_probs=102.7
Q ss_pred HHHHHhccCChhHHHHHHHHHHHH-------------HHhhhCHHHHHHHHHHHHHHHHHcC-CcccHHHHHHHHHHHHh
Q 024660 20 KLEKIVNEGNFYGAQQMYKSISAR-------------YVAAQRYSEALDLLHAGACLQLKNN-QLTCGAELAVSFVEALV 85 (264)
Q Consensus 20 rl~~~i~~G~~YEAhQ~~RTl~~R-------------y~~~kk~~eAieLL~~GA~~ll~~~-Q~~sa~DL~~llvevl~ 85 (264)
.-...+..|+|=+|.+.|+..... |...++|++|++.+.......-+.+ ....-++....+..+|.
T Consensus 11 ~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 90 (258)
T 3uq3_A 11 EGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYH 90 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHH
Confidence 334445666666666666655433 4556677777776665444332221 11111344444445555
Q ss_pred hCCCCCChhHHHHHHHHHHhCCCCCCCCCCCCCchHHHHHHHHhhhhhhhhhhhHHHHHHHHhhhhcCCCCCCCHHHHHH
Q 024660 86 KGKVAYDNENLDRVRKIYELFPQIPVPHNLEDDDDLHELTEALGAAKLRVEGCSSFLKAAIKWSIEFGAPKTGSPELHVM 165 (264)
Q Consensus 86 ~~~~~~~~~~~~rl~~l~~~~p~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~~~~fl~~ai~WS~~~g~~~~Gdp~LH~~ 165 (264)
..+-. ++.+.-+.+.+...|... -.. .....++....+++++.- ...++..+..
T Consensus 91 ~~~~~--~~A~~~~~~a~~~~~~~~---------~~~--------~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~ 144 (258)
T 3uq3_A 91 KLGDL--KKTIEYYQKSLTEHRTAD---------ILT--------KLRNAEKELKKAEAEAYV-------NPEKAEEARL 144 (258)
T ss_dssp HTTCH--HHHHHHHHHHHHHCCCHH---------HHH--------HHHHHHHHHHHHHHHHHC-------CHHHHHHHHH
T ss_pred HcccH--HHHHHHHHHHHhcCchhH---------HHH--------HHhHHHHHHHHHHHHHHc-------CcchHHHHHH
Confidence 44311 234444444444433210 000 001111123333333332 1246778888
Q ss_pred HHHHHHhcCCCcChHhhhhhhhcC-----CChHH---HHHHHHH---------HHh---hcCCCchHHHHHHHHHHHHhc
Q 024660 166 LAEYLYSESPELDMARVSFHFVRG-----NNPEK---FASTIVN---------FMG---KCYPGEDDLAVARAILMYLSL 225 (264)
Q Consensus 166 la~~~~~e~~~~~~~~A~~Hfl~~-----~d~~~---~a~~L~e---------w~~---~~~~~e~dlfiaRaVL~~L~l 225 (264)
+|.+++..+ ++.+|..+|-.. +++.. ++.+... ++. +-.|...+.+...+. .|...
T Consensus 145 ~~~~~~~~~---~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~-~~~~~ 220 (258)
T 3uq3_A 145 EGKEYFTKS---DWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT-AQIAV 220 (258)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH-HHHHT
T ss_pred HHHHHHHhc---CHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHH-HHHHH
Confidence 999999888 888888877542 22322 2222211 000 123455555555444 56778
Q ss_pred CChhHHHHHHHHHHHHhhhhhcCC
Q 024660 226 GNMKDANYIMDEVKKQVENKQLQL 249 (264)
Q Consensus 226 ~n~~~A~~~~~~f~~~~~~~~~~~ 249 (264)
|+...|...++...+..++....|
T Consensus 221 g~~~~A~~~~~~a~~~~~~~~~~p 244 (258)
T 3uq3_A 221 KEYASALETLDAARTKDAEVNNGS 244 (258)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHTTT
T ss_pred hhHHHHHHHHHHHHHhChhhcCCC
Confidence 999999999999888776544433
No 34
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=92.88 E-value=5.7 Score=36.57 Aligned_cols=80 Identities=10% Similarity=-0.079 Sum_probs=44.4
Q ss_pred CCHHHHHHHHHHHHhcCCCcChHhhhhhhhc-----CCChHHHHHHHHHHHhhc---------------------CCCc-
Q 024660 158 GSPELHVMLAEYLYSESPELDMARVSFHFVR-----GNNPEKFASTIVNFMGKC---------------------YPGE- 210 (264)
Q Consensus 158 Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~-----~~d~~~~a~~L~ew~~~~---------------------~~~e- 210 (264)
.++..+..+|..|.+.| ++.+|..+|-. .+++..+..+..-+...| .|..
T Consensus 439 ~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~ 515 (597)
T 2xpi_A 439 GTHLPYLFLGMQHMQLG---NILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPW 515 (597)
T ss_dssp TCSHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGG
T ss_pred cchHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhH
Confidence 46677888888888888 88888777743 233433322222111111 1111
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 024660 211 DDLAVARAILMYLSLGNMKDANYIMDEVKKQ 241 (264)
Q Consensus 211 ~dlfiaRaVL~~L~l~n~~~A~~~~~~f~~~ 241 (264)
...+... .-.|...|+.+.|...++...+.
T Consensus 516 ~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~ 545 (597)
T 2xpi_A 516 AATWANL-GHAYRKLKMYDAAIDALNQGLLL 545 (597)
T ss_dssp HHHHHHH-HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHhcCHHHHHHHHHHHHHh
Confidence 2223222 23345578888888888777654
No 35
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=92.81 E-value=2.8 Score=32.75 Aligned_cols=41 Identities=2% Similarity=-0.104 Sum_probs=25.0
Q ss_pred hHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHhcCCCcChHhhhhhhh
Q 024660 139 SSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDMARVSFHFV 187 (264)
Q Consensus 139 ~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl 187 (264)
..+++++++ .+ ...+++..+..+|.++...+ ++.+|..+|-
T Consensus 97 ~~~~~~~~~----~~-~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~ 137 (225)
T 2vq2_A 97 MAYFDKALA----DP-TYPTPYIANLNKGICSAKQG---QFGLAEAYLK 137 (225)
T ss_dssp HHHHHHHHT----ST-TCSCHHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHHHc----Cc-CCcchHHHHHHHHHHHHHcC---CHHHHHHHHH
Confidence 455555555 11 12345677777777777777 7777766664
No 36
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=92.52 E-value=2.2 Score=35.51 Aligned_cols=41 Identities=5% Similarity=-0.041 Sum_probs=31.9
Q ss_pred hHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHhcCCCcChHhhhhhhhcC
Q 024660 139 SSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDMARVSFHFVRG 189 (264)
Q Consensus 139 ~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~~ 189 (264)
..+++++++-. ..++..+..+|.++.+.| ++.+|..+|-..
T Consensus 256 ~~~~~~a~~~~-------~~~~~~~~~la~~~~~~g---~~~~A~~~~~~a 296 (330)
T 3hym_B 256 LDYHRQALVLI-------PQNASTYSAIGYIHSLMG---NFENAVDYFHTA 296 (330)
T ss_dssp HHHHHHHHHHS-------TTCSHHHHHHHHHHHHHT---CHHHHHHHHHTT
T ss_pred HHHHHHHHhhC-------ccchHHHHHHHHHHHHhc---cHHHHHHHHHHH
Confidence 45555665432 247889999999999999 999999998764
No 37
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=92.44 E-value=5.1 Score=34.88 Aligned_cols=25 Identities=16% Similarity=0.102 Sum_probs=12.3
Q ss_pred CHHHHHHHHHHHHhcCCCcChHhhhhhh
Q 024660 159 SPELHVMLAEYLYSESPELDMARVSFHF 186 (264)
Q Consensus 159 dp~LH~~la~~~~~e~~~~~~~~A~~Hf 186 (264)
++..|..+|.+|++.| ++.+|..+|
T Consensus 236 ~~~~~~~l~~~~~~~g---~~~~A~~~~ 260 (388)
T 1w3b_A 236 HAVVHGNLACVYYEQG---LIDLAIDTY 260 (388)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcC---CHHHHHHHH
Confidence 3444555555555555 444444444
No 38
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=92.39 E-value=0.63 Score=39.84 Aligned_cols=160 Identities=10% Similarity=-0.021 Sum_probs=86.0
Q ss_pred HHHHHHHHHHhccCChhHHHHHHHHHH--------------------HHHHhhhCHHHHHHHHHHHHHHHHHcCCcccHH
Q 024660 15 QENIDKLEKIVNEGNFYGAQQMYKSIS--------------------ARYVAAQRYSEALDLLHAGACLQLKNNQLTCGA 74 (264)
Q Consensus 15 ~r~l~rl~~~i~~G~~YEAhQ~~RTl~--------------------~Ry~~~kk~~eAieLL~~GA~~ll~~~Q~~sa~ 74 (264)
...+.++...+..|+|=+|.+.|.... .-|..+++|++|++.+.+......+......-+
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 345677888899999998887775322 223556799999988765532221211111112
Q ss_pred HHHHHHHHHHhhCCC-CCChhHHHHHHHHHHhCCCCCCCCCCCCCchHH-HHHHH---HhhhhhhhhhhhHHHHHHHHhh
Q 024660 75 ELAVSFVEALVKGKV-AYDNENLDRVRKIYELFPQIPVPHNLEDDDDLH-ELTEA---LGAAKLRVEGCSSFLKAAIKWS 149 (264)
Q Consensus 75 DL~~llvevl~~~~~-~~~~~~~~rl~~l~~~~p~~~~~r~l~~~~~~~-~~~~~---~~~~~~~~~~~~~fl~~ai~WS 149 (264)
+.-..+-.+|...+- +-..+.+.+..++....|... ... ..--+ ........++-..+.++|+...
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~---------~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~ 226 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNE---------EFDVKVRYNHAKALYLDSRYEESLYQVNKAIEIS 226 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH---------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccc---------cchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 222222233333221 111123334444444333110 000 00000 0111122333478889999988
Q ss_pred hhcCCCCCCCHHHHHHHHHHHHhcCCCcChHhh-hhhhh
Q 024660 150 IEFGAPKTGSPELHVMLAEYLYSESPELDMARV-SFHFV 187 (264)
Q Consensus 150 ~~~g~~~~Gdp~LH~~la~~~~~e~~~~~~~~A-~~Hfl 187 (264)
.+.+ ...+-+.++..+|.+|.+.| ++.+| ..||-
T Consensus 227 ~~~~-~~~~~~~~~~~lg~~y~~~g---~~~~Ai~~~~~ 261 (293)
T 2qfc_A 227 CRIN-SMALIGQLYYQRGECLRKLE---YEEAEIEDAYK 261 (293)
T ss_dssp HHTT-BCSSHHHHHHHHHHHHHHTT---CCHHHHHHHHH
T ss_pred HhcC-cHHHHHHHHHHHHHHHHHcC---CcHHHHHHHHH
Confidence 6543 35677899999999999999 99999 66664
No 39
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=92.28 E-value=3.9 Score=33.26 Aligned_cols=179 Identities=11% Similarity=0.051 Sum_probs=91.1
Q ss_pred HHHHHhccCChhHHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhhCCCCCChhHHHHH
Q 024660 20 KLEKIVNEGNFYGAQQMYKSISARYVAAQRYSEALDLLHAGACLQLKNNQLTCGAELAVSFVEALVKGKVAYDNENLDRV 99 (264)
Q Consensus 20 rl~~~i~~G~~YEAhQ~~RTl~~Ry~~~kk~~eAieLL~~GA~~ll~~~Q~~sa~DL~~llvevl~~~~~~~~~~~~~rl 99 (264)
+-...+..|+|=+|.+.|+......-. -.+.++.=+..+.+.|++..|.+...-.++ .. .+.++.......+
T Consensus 9 ~a~~~~~~~~~~~A~~~~~~~l~~~p~------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~-~~~~~~~~~~~~l 80 (272)
T 3u4t_A 9 YADFLFKNNNYAEAIEVFNKLEAKKYN------SPYIYNRRAVCYYELAKYDLAQKDIETYFS-KV-NATKAKSADFEYY 80 (272)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHTTCC------CSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TS-CTTTCCHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-cc-CchhHHHHHHHHH
Confidence 334455666666666666655433211 111333334455566666666555444433 11 1111212223444
Q ss_pred HHHHHhCCCCCCCCCCCCCchHHHHHHHHhhhhhhhhhhhHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHhcCCCcCh
Q 024660 100 RKIYELFPQIPVPHNLEDDDDLHELTEALGAAKLRVEGCSSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDM 179 (264)
Q Consensus 100 ~~l~~~~p~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~~~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~~~~~e~~~~~~ 179 (264)
..++..... .++-.+..+++++-. ..++..+..+|.+|...| ++
T Consensus 81 g~~~~~~~~--------------------------~~~A~~~~~~a~~~~-------~~~~~~~~~l~~~~~~~~---~~ 124 (272)
T 3u4t_A 81 GKILMKKGQ--------------------------DSLAIQQYQAAVDRD-------TTRLDMYGQIGSYFYNKG---NF 124 (272)
T ss_dssp HHHHHHTTC--------------------------HHHHHHHHHHHHHHS-------TTCTHHHHHHHHHHHHTT---CH
T ss_pred HHHHHHccc--------------------------HHHHHHHHHHHHhcC-------cccHHHHHHHHHHHHHcc---CH
Confidence 444443211 111145555666532 246678889999999999 89
Q ss_pred HhhhhhhhcCC--C---hHHHHHHH-HHH--------------HhhcCCCchHHHHHHHHHHHHhcCC---hhHHHHHHH
Q 024660 180 ARVSFHFVRGN--N---PEKFASTI-VNF--------------MGKCYPGEDDLAVARAILMYLSLGN---MKDANYIMD 236 (264)
Q Consensus 180 ~~A~~Hfl~~~--d---~~~~a~~L-~ew--------------~~~~~~~e~dlfiaRaVL~~L~l~n---~~~A~~~~~ 236 (264)
.+|..+|-.+- + +..+..+- .-+ ..+-.|...+.+..++.+.+ .+++ ...|...++
T Consensus 125 ~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~A~~~~~ 203 (272)
T 3u4t_A 125 PLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANA-AQDPDTKQGLAKPYYE 203 (272)
T ss_dssp HHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-HHSTTCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHH-HcCcchhhHHHHHHHH
Confidence 88888885432 2 22221111 000 01224555555666665543 3466 666888888
Q ss_pred HHHHHhh
Q 024660 237 EVKKQVE 243 (264)
Q Consensus 237 ~f~~~~~ 243 (264)
...+...
T Consensus 204 ~a~~~~~ 210 (272)
T 3u4t_A 204 KLIEVCA 210 (272)
T ss_dssp HHHHHHG
T ss_pred HHHHHHh
Confidence 8776654
No 40
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=91.98 E-value=1.2 Score=39.29 Aligned_cols=135 Identities=7% Similarity=-0.043 Sum_probs=74.5
Q ss_pred HHHHHHhhhCHHHHHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhhCCCCCChhHHHHHHHHHHhCCCCCCCCCCCCCc
Q 024660 40 ISARYVAAQRYSEALDLLHAGACLQLKNNQLTCGAELAVSFVEALVKGKVAYDNENLDRVRKIYELFPQIPVPHNLEDDD 119 (264)
Q Consensus 40 l~~Ry~~~kk~~eAieLL~~GA~~ll~~~Q~~sa~DL~~llvevl~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~l~~~~ 119 (264)
+..=|..+++|++|++.+.+.....-+.+.... .+....+-.+|.+.|-. ++.+.-+.+.+...+....+.
T Consensus 228 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~~~~~~~~------ 298 (378)
T 3q15_A 228 IANSYDRSGDDQMAVEHFQKAAKVSREKVPDLL-PKVLFGLSWTLCKAGQT--QKAFQFIEEGLDHITARSHKF------ 298 (378)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGH-HHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHCCTTCCSC------
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhH-HHHHHHHHHHHHHCCCH--HHHHHHHHHHHHHHHHcCCHH------
Confidence 333456678888888887777665544444444 55555666666665521 234444445555444322211
Q ss_pred hHHHHHHHHhhhhhhhhhhhHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHhcCCCcChHhhhhhhhcC
Q 024660 120 DLHELTEALGAAKLRVEGCSSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDMARVSFHFVRG 189 (264)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~~ 189 (264)
-....+- ...--...+-...+..|+.+-.+.+. ....+++...+|.+|.+.| ++.+|..+|-.+
T Consensus 299 ~~~~~~~--l~~ly~~~~~~~~~~~al~~~~~~~~-~~~~~~~~~~la~~y~~~g---~~~~A~~~~~~a 362 (378)
T 3q15_A 299 YKELFLF--LQAVYKETVDERKIHDLLSYFEKKNL-HAYIEACARSAAAVFESSC---HFEQAAAFYRKV 362 (378)
T ss_dssp HHHHHHH--HHHHHSSSCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHHHHH--HHHHHhCCCcHHHHHHHHHHHHhCCC-hhHHHHHHHHHHHHHHHCC---CHHHHHHHHHHH
Confidence 1111100 00000000012557777887776432 2234567888999999999 999999888543
No 41
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=91.89 E-value=4.6 Score=34.76 Aligned_cols=197 Identities=12% Similarity=0.018 Sum_probs=105.4
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHH--------------HHHHHhhhCHHHHHHHHHHHH--------------HHHHHc
Q 024660 16 ENIDKLEKIVNEGNFYGAQQMYKSI--------------SARYVAAQRYSEALDLLHAGA--------------CLQLKN 67 (264)
Q Consensus 16 r~l~rl~~~i~~G~~YEAhQ~~RTl--------------~~Ry~~~kk~~eAieLL~~GA--------------~~ll~~ 67 (264)
..+.+-......|+|=+|.+.|+.. ..=|...|+|++|++.+.... ..+.+.
T Consensus 67 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 146 (365)
T 4eqf_A 67 GAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNT 146 (365)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHcc
Confidence 3555556666777777777666644 334677788888888776543 346667
Q ss_pred CCcccHHHHHHHHHHHHhhCCCC------------------CC----hhHHHHHHHHHHhCCCCCCCCCCCCCchHHHHH
Q 024660 68 NQLTCGAELAVSFVEALVKGKVA------------------YD----NENLDRVRKIYELFPQIPVPHNLEDDDDLHELT 125 (264)
Q Consensus 68 ~Q~~sa~DL~~llvevl~~~~~~------------------~~----~~~~~rl~~l~~~~p~~~~~r~l~~~~~~~~~~ 125 (264)
|++..|.+...-.++........ .. ++.+.-+.+.+...|....+ +-...+-
T Consensus 147 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~------~~~~~l~ 220 (365)
T 4eqf_A 147 SHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDP------DLQTGLG 220 (365)
T ss_dssp TCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCH------HHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCH------HHHHHHH
Confidence 77777777666665543221110 00 12333344444443321100 0011111
Q ss_pred HHHhhhhhhhhhhhHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHhcCCCcChHhhhhhhhcCCChHHHHHHHHHHHhh
Q 024660 126 EALGAAKLRVEGCSSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDMARVSFHFVRGNNPEKFASTIVNFMGK 205 (264)
Q Consensus 126 ~~~~~~~~~~~~~~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~~~d~~~~a~~L~ew~~~ 205 (264)
..- ......++-..+.+++++-. -.++..+..+|.+|.+.| ++.+|..+|-.+- +
T Consensus 221 ~~~-~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al--------------~ 275 (365)
T 4eqf_A 221 VLF-HLSGEFNRAIDAFNAALTVR-------PEDYSLWNRLGATLANGD---RSEEAVEAYTRAL--------------E 275 (365)
T ss_dssp HHH-HHHTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH--------------H
T ss_pred HHH-HHCCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHH--------------h
Confidence 100 01111222244444444431 245777777888887777 7777776653210 1
Q ss_pred cCCCchHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhh
Q 024660 206 CYPGEDDLAVARAILMYLSLGNMKDANYIMDEVKKQVEN 244 (264)
Q Consensus 206 ~~~~e~dlfiaRaVL~~L~l~n~~~A~~~~~~f~~~~~~ 244 (264)
-.|.....+...+. .|...|+...|...+...++..|+
T Consensus 276 ~~p~~~~~~~~l~~-~~~~~g~~~~A~~~~~~al~~~~~ 313 (365)
T 4eqf_A 276 IQPGFIRSRYNLGI-SCINLGAYREAVSNFLTALSLQRK 313 (365)
T ss_dssp HCTTCHHHHHHHHH-HHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred cCCCchHHHHHHHH-HHHHCCCHHHHHHHHHHHHHhCcc
Confidence 13444454444443 456788999999999888877664
No 42
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=91.76 E-value=2 Score=35.77 Aligned_cols=182 Identities=16% Similarity=0.120 Sum_probs=94.4
Q ss_pred HhccCChhHHHHHHHHHHHH-----------------------------HHhhhCHHHHHHHHHHHHHHHHHcCCcccHH
Q 024660 24 IVNEGNFYGAQQMYKSISAR-----------------------------YVAAQRYSEALDLLHAGACLQLKNNQLTCGA 74 (264)
Q Consensus 24 ~i~~G~~YEAhQ~~RTl~~R-----------------------------y~~~kk~~eAieLL~~GA~~ll~~~Q~~sa~ 74 (264)
....|+|=+|.+.++..... +...+++++|++.+...... ... -.
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----~~~--~~ 172 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEM----NPN--DA 172 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHH----STT--CH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhh----CCC--CH
Confidence 45677888888888776532 67778888888877654321 111 12
Q ss_pred HHHHHHHHHHhhCCCCCChhHHHHHHHHHHhCCCCCCCCCCCCCchHHHHHHHHhhhhhhhhhhhHHHHHHHHhhhhcCC
Q 024660 75 ELAVSFVEALVKGKVAYDNENLDRVRKIYELFPQIPVPHNLEDDDDLHELTEALGAAKLRVEGCSSFLKAAIKWSIEFGA 154 (264)
Q Consensus 75 DL~~llvevl~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~~~~fl~~ai~WS~~~g~ 154 (264)
+....+..+|...+- -++.+.-+.+.+...|.... -...+-..-.. ....++-..+++++++-.
T Consensus 173 ~~~~~la~~~~~~~~--~~~A~~~~~~~~~~~~~~~~--------~~~~l~~~~~~-~~~~~~A~~~~~~a~~~~----- 236 (327)
T 3cv0_A 173 QLHASLGVLYNLSNN--YDSAAANLRRAVELRPDDAQ--------LWNKLGATLAN-GNRPQEALDAYNRALDIN----- 236 (327)
T ss_dssp HHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHH--------HHHHHHHHHHH-TTCHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHhcc--HHHHHHHHHHHHHhCCCcHH--------HHHHHHHHHHH-cCCHHHHHHHHHHHHHcC-----
Confidence 333333344444331 12333444444443332110 00111000000 111122245555555532
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCcChHhhhhhhhcCCChHHHHHHHHHHHhh-cCC-C------chHHHHHHHHHHHHhcC
Q 024660 155 PKTGSPELHVMLAEYLYSESPELDMARVSFHFVRGNNPEKFASTIVNFMGK-CYP-G------EDDLAVARAILMYLSLG 226 (264)
Q Consensus 155 ~~~Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~~~d~~~~a~~L~ew~~~-~~~-~------e~dlfiaRaVL~~L~l~ 226 (264)
..++..+..+|.+|...| ++.+|..+|-.. ++.... ..+ + ..+.+ ......|..+|
T Consensus 237 --~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~a----------~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g 300 (327)
T 3cv0_A 237 --PGYVRVMYNMAVSYSNMS---QYDLAAKQLVRA----------IYMQVGGTTPTGEASREATRSMW-DFFRMLLNVMN 300 (327)
T ss_dssp --TTCHHHHHHHHHHHHHTT---CHHHHHHHHHHH----------HHHHTTSCC-----CCTHHHHHH-HHHHHHHHHTT
T ss_pred --CCCHHHHHHHHHHHHHhc---cHHHHHHHHHHH----------HHhCCccccccccchhhcCHHHH-HHHHHHHHhcC
Confidence 257889999999999999 999998877422 111111 000 1 22333 33444567789
Q ss_pred ChhHHHHHHHHHHHHhh
Q 024660 227 NMKDANYIMDEVKKQVE 243 (264)
Q Consensus 227 n~~~A~~~~~~f~~~~~ 243 (264)
+.+.|...+..-.+..+
T Consensus 301 ~~~~A~~~~~~~l~~~~ 317 (327)
T 3cv0_A 301 RPDLVELTYAQNVEPFA 317 (327)
T ss_dssp CHHHHHHHTTCCSHHHH
T ss_pred CHHHHHHHHHHHHHhcc
Confidence 99999988776555544
No 43
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=91.69 E-value=1 Score=32.00 Aligned_cols=47 Identities=9% Similarity=0.067 Sum_probs=32.2
Q ss_pred hHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHhcCCCcChHhhhhhhhc
Q 024660 139 SSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDMARVSFHFVR 188 (264)
Q Consensus 139 ~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~ 188 (264)
..+.++++......+....+.+..+..+|.++...+ ++.+|..+|-.
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~ 104 (131)
T 1elr_A 58 RELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEE---KYKDAIHFYNK 104 (131)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhc---cHHHHHHHHHH
Confidence 556666666654432111122778999999999999 99999888753
No 44
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=91.49 E-value=3.9 Score=31.55 Aligned_cols=28 Identities=7% Similarity=-0.129 Sum_probs=25.5
Q ss_pred CCHHHHHHHHHHHHhcCCCcChHhhhhhhhc
Q 024660 158 GSPELHVMLAEYLYSESPELDMARVSFHFVR 188 (264)
Q Consensus 158 Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~ 188 (264)
.++..+..+|.+|.+.| ++.+|..+|-.
T Consensus 139 ~~~~~~~~lg~~~~~~g---~~~~A~~~~~~ 166 (184)
T 3vtx_A 139 GFIRAYQSIGLAYEGKG---LRDEAVKYFKK 166 (184)
T ss_dssp TCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHCC---CHHHHHHHHHH
Confidence 67999999999999999 99999999853
No 45
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=91.37 E-value=5.3 Score=32.91 Aligned_cols=68 Identities=18% Similarity=0.155 Sum_probs=41.5
Q ss_pred chHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHcCCcccHHHHHHHHHHH
Q 024660 13 PAQENIDKLEKIVNEGNFYGAQQMYKSISARYVAAQRYSEALDLLHAGACLQLKNNQLTCGAELAVSFVEA 83 (264)
Q Consensus 13 ~~~r~l~rl~~~i~~G~~YEAhQ~~RTl~~Ry~~~kk~~eAieLL~~GA~~ll~~~Q~~sa~DL~~llvev 83 (264)
..+....+-...+..|+|=+|.+.|+.+...+-.. ..+.+.++.-+..+.+.|++..|.+...-+++.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~ 81 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTH---EWAADAQFYLARAYYQNKEYLLAASEYERFIQI 81 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCS---TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC---cchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 45666677777788888888888888776554221 122344455555566666666665555544443
No 46
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=91.27 E-value=2.8 Score=29.42 Aligned_cols=27 Identities=19% Similarity=0.167 Sum_probs=18.6
Q ss_pred CCHHHHHHHHHHHHhcCCCcChHhhhhhhh
Q 024660 158 GSPELHVMLAEYLYSESPELDMARVSFHFV 187 (264)
Q Consensus 158 Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl 187 (264)
.++..+..+|.++++.+ ++.+|..+|-
T Consensus 101 ~~~~~~~~la~~~~~~~---~~~~A~~~~~ 127 (136)
T 2fo7_A 101 RSAEAWYNLGNAYYKQG---DYDEAIEYYQ 127 (136)
T ss_dssp TCHHHHHHHHHHHHTTT---CHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHc---cHHHHHHHHH
Confidence 34667777777777777 7777766654
No 47
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=90.35 E-value=1.1 Score=38.19 Aligned_cols=162 Identities=11% Similarity=-0.001 Sum_probs=94.6
Q ss_pred HHHHHHHHHHhccCChhHHHHHHHH--------------------HHHHHHhhhCHHHHHHHHHHHHHHHHHcCCcccHH
Q 024660 15 QENIDKLEKIVNEGNFYGAQQMYKS--------------------ISARYVAAQRYSEALDLLHAGACLQLKNNQLTCGA 74 (264)
Q Consensus 15 ~r~l~rl~~~i~~G~~YEAhQ~~RT--------------------l~~Ry~~~kk~~eAieLL~~GA~~ll~~~Q~~sa~ 74 (264)
....+.++..+..|+|=+|...|.. +..-|...++|++|++.+.+......+.+....-+
T Consensus 76 ~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~ 155 (293)
T 3u3w_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHH
Confidence 3444567788889999888877754 33334556799999998877655333333332223
Q ss_pred HHHHHHHHHHhhCCC-CCChhHHHHHHHHHHhCCCCCCCCCCCCCchHHHH--HHH-HhhhhhhhhhhhHHHHHHHHhhh
Q 024660 75 ELAVSFVEALVKGKV-AYDNENLDRVRKIYELFPQIPVPHNLEDDDDLHEL--TEA-LGAAKLRVEGCSSFLKAAIKWSI 150 (264)
Q Consensus 75 DL~~llvevl~~~~~-~~~~~~~~rl~~l~~~~p~~~~~r~l~~~~~~~~~--~~~-~~~~~~~~~~~~~fl~~ai~WS~ 150 (264)
+.-..+-.+|...+- +-..+.+.+..+++..+|...+ ..-.+ +-+ ........++...+.++|+....
T Consensus 156 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~--------~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~ 227 (293)
T 3u3w_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEE--------FDVKVRYNHAKALYLDSRYEESLYQVNKAIEISC 227 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchh--------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 333334455554441 1112344555555555432110 00000 000 11122233445888999999998
Q ss_pred hcCCCCCCCHHHHHHHHHHHHhcCCCcC-hHhhhhhhhc
Q 024660 151 EFGAPKTGSPELHVMLAEYLYSESPELD-MARVSFHFVR 188 (264)
Q Consensus 151 ~~g~~~~Gdp~LH~~la~~~~~e~~~~~-~~~A~~Hfl~ 188 (264)
+.+. ..+-+.++..+|.+|.+.| + +.+|..+|-.
T Consensus 228 ~~~~-~~~~~~~~~~lg~~~~~~g---~~~~~A~~~~~~ 262 (293)
T 3u3w_A 228 RINS-MALIGQLYYQRGECLRKLE---YEEAEIEDAYKK 262 (293)
T ss_dssp HTTB-CTTHHHHHHHHHHHHHHTT---CCHHHHHHHHHH
T ss_pred HcCc-HHHHHHHHHHHHHHHHHhC---CcHHHHHHHHHH
Confidence 7653 4667899999999999988 6 4788877643
No 48
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=90.18 E-value=5.2 Score=31.87 Aligned_cols=47 Identities=13% Similarity=0.052 Sum_probs=28.8
Q ss_pred hHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHhcCCCcChHhhhhhhhc
Q 024660 139 SSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDMARVSFHFVR 188 (264)
Q Consensus 139 ~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~ 188 (264)
...+++++.-..+.+......+..+..+|.+|.+.+ ++.+|..+|-.
T Consensus 58 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~ 104 (258)
T 3uq3_A 58 ISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLG---DLKKTIEYYQK 104 (258)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcc---cHHHHHHHHHH
Confidence 445555555544332111123677888888888888 88888777754
No 49
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=89.52 E-value=4.2 Score=44.63 Aligned_cols=156 Identities=11% Similarity=0.158 Sum_probs=82.7
Q ss_pred HHHHHHHHHhhhCHHHHHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhhCCCCCChhHHHHHHHHHHhCCCCCCCCCCC
Q 024660 37 YKSISARYVAAQRYSEALDLLHAGACLQLKNNQLTCGAELAVSFVEALVKGKVAYDNENLDRVRKIYELFPQIPVPHNLE 116 (264)
Q Consensus 37 ~RTl~~Ry~~~kk~~eAieLL~~GA~~ll~~~Q~~sa~DL~~llvevl~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~l~ 116 (264)
.=.++.-|+.++.+.+|+++|..+. ++...+..-.+|+.+++-+--+. ...|..+.+..++....+ .++
T Consensus 988 Vs~~vKaf~~aglp~EaieLLEKiv---l~~s~fs~n~~LqnlLi~tAIka-------D~~Rv~eyI~kLd~~d~~-eIA 1056 (1630)
T 1xi4_A 988 VSVTVKAFMTADLPNELIELLEKIV---LDNSVFSEHRNLQNLLILTAIKA-------DRTRVMEYINRLDNYDAP-DIA 1056 (1630)
T ss_pred hHHHHHHHHhCCCHHHHHHHHHHHH---cCCCcccccHHHHHHHHHHHHHh-------ChhhHHHHHHHhhhccHH-HHH
Confidence 3455666778888888888888665 33444445556666665443333 123333333333211100 000
Q ss_pred CC-chHHHHHHHHhhhhh---hhhhhhHHHHHHHHhhhhcCC-CCCCCHHHHHHHHHHHHhcCCCcChHhhhhhhhcCCC
Q 024660 117 DD-DDLHELTEALGAAKL---RVEGCSSFLKAAIKWSIEFGA-PKTGSPELHVMLAEYLYSESPELDMARVSFHFVRGNN 191 (264)
Q Consensus 117 ~~-~~~~~~~~~~~~~~~---~~~~~~~fl~~ai~WS~~~g~-~~~Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~~~d 191 (264)
.- .......||...=+. -.+.+..++.+.-.|.....- .+.-.|..|..+|..+.+.| ++.+|...|+.++|
T Consensus 1057 ~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G---~~kEAIdsYiKAdD 1133 (1630)
T 1xi4_A 1057 NIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKG---MVKEAIDSYIKADD 1133 (1630)
T ss_pred HHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CHHHHHHHHHhcCC
Confidence 00 000111222221100 001123344444445442100 13466999999999999999 99999999999999
Q ss_pred hHHHHHHHHHHHhhc
Q 024660 192 PEKFASTIVNFMGKC 206 (264)
Q Consensus 192 ~~~~a~~L~ew~~~~ 206 (264)
++.+.++..-....|
T Consensus 1134 ~say~eVa~~~~~lG 1148 (1630)
T 1xi4_A 1134 PSSYMEVVQAANTSG 1148 (1630)
T ss_pred hHHHHHHHHHHHHcC
Confidence 987766543333333
No 50
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=89.16 E-value=4.6 Score=35.03 Aligned_cols=45 Identities=9% Similarity=0.110 Sum_probs=33.1
Q ss_pred hhHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHhcCCCcChHhhhhhhh
Q 024660 138 CSSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDMARVSFHFV 187 (264)
Q Consensus 138 ~~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl 187 (264)
-..++.+++......+.. .....+..+|.+++..| ++.+|..++-
T Consensus 154 A~~~~~~al~~~~~~~~~--~~~~~~~~la~~~~~~g---~~~~A~~~l~ 198 (373)
T 1hz4_A 154 AEASARSGIEVLSSYQPQ--QQLQCLAMLIQCSLARG---DLDNARSQLN 198 (373)
T ss_dssp HHHHHHHHHHHTTTSCGG--GGHHHHHHHHHHHHHHT---CHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccCcH--HHHHHHHHHHHHHHHcC---CHHHHHHHHH
Confidence 367778888776654321 13467888999999999 9999988874
No 51
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=89.14 E-value=5 Score=34.19 Aligned_cols=81 Identities=12% Similarity=-0.011 Sum_probs=49.8
Q ss_pred hHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHhcCCCcChHhhhhhhhcCCChHHHHHHHHHHHhhc-C-----CCchH
Q 024660 139 SSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDMARVSFHFVRGNNPEKFASTIVNFMGKC-Y-----PGEDD 212 (264)
Q Consensus 139 ~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~~~d~~~~a~~L~ew~~~~-~-----~~e~d 212 (264)
..+.+++++-. ..++..+..+|.+|.+.| ++.+|..+|-..- +..... . +....
T Consensus 271 ~~~~~~al~~~-------~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al----------~~~~~~~~~~~~~~~~~~ 330 (368)
T 1fch_A 271 VAAYRRALELQ-------PGYIRSRYNLGISCINLG---AHREAVEHFLEAL----------NMQRKSRGPRGEGGAMSE 330 (368)
T ss_dssp HHHHHHHHHHC-------TTCHHHHHHHHHHHHHHT---CHHHHHHHHHHHH----------HHHHTC------CCCCCH
T ss_pred HHHHHHHHHhC-------CCcHHHHHHHHHHHHHCC---CHHHHHHHHHHHH----------HhCCCCCCccccccchhh
Confidence 45556666532 267899999999999999 9999998874321 111110 0 11112
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHH
Q 024660 213 LAVARAILMYLSLGNMKDANYIMDEVK 239 (264)
Q Consensus 213 lfiaRaVL~~L~l~n~~~A~~~~~~f~ 239 (264)
-........|..+|+...|..++..=.
T Consensus 331 ~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 331 NIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp HHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred HHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 233444555677889988887765433
No 52
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=88.96 E-value=11 Score=33.00 Aligned_cols=28 Identities=18% Similarity=0.152 Sum_probs=23.7
Q ss_pred CCHHHHHHHHHHHHhcCCCcChHhhhhhhhc
Q 024660 158 GSPELHVMLAEYLYSESPELDMARVSFHFVR 188 (264)
Q Consensus 158 Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~ 188 (264)
.++..+..+|.+|.+.| ++.+|..+|-.
T Consensus 175 ~~~~~~~~l~~~~~~~g---~~~~A~~~~~~ 202 (450)
T 2y4t_A 175 WDAELRELRAECFIKEG---EPRKAISDLKA 202 (450)
T ss_dssp TCHHHHHHHHHHHHHTT---CGGGGHHHHHH
T ss_pred CChHHHHHHHHHHHHCC---CHHHHHHHHHH
Confidence 57889999999999999 88888877754
No 53
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=88.92 E-value=11 Score=32.98 Aligned_cols=40 Identities=23% Similarity=0.116 Sum_probs=30.2
Q ss_pred hHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHhcCCCcChHhhhhhhhc
Q 024660 139 SSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDMARVSFHFVR 188 (264)
Q Consensus 139 ~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~ 188 (264)
....+++++-. ..++..+..+|.+|...| ++.+|..+|-.
T Consensus 197 ~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~ 236 (450)
T 2y4t_A 197 ISDLKAASKLK-------NDNTEAFYKISTLYYQLG---DHELSLSEVRE 236 (450)
T ss_dssp HHHHHHHHHHH-------CSCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHHHHHhC-------CCCHHHHHHHHHHHHHcC---CHHHHHHHHHH
Confidence 45555555542 256889999999999999 99999888854
No 54
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=88.81 E-value=4.7 Score=30.17 Aligned_cols=92 Identities=8% Similarity=-0.004 Sum_probs=58.7
Q ss_pred HHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhhCCCCCChhHHHHHHHHHHhCCCCCCCCCC
Q 024660 36 MYKSISARYVAAQRYSEALDLLHAGACLQLKNNQLTCGAELAVSFVEALVKGKVAYDNENLDRVRKIYELFPQIPVPHNL 115 (264)
Q Consensus 36 ~~RTl~~Ry~~~kk~~eAieLL~~GA~~ll~~~Q~~sa~DL~~llvevl~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~l 115 (264)
.++-.-+.|.++|+|++|++...+.... -|-+......+..++.....-
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~-------------------------~p~~~~~~~~~~~~~~~~~~~------ 63 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKR-------------------------DPENAILYSNRAACLTKLMEF------ 63 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------------CTTCHHHHHHHHHHHHHTTCH------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh-------------------------CCCCHHHHHHHhhHHHhhccH------
Confidence 3556677788888999988877654321 122333444455555443211
Q ss_pred CCCchHHHHHHHHhhhhhhhhhhhHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHhcCCCcChHhhhhhhhc
Q 024660 116 EDDDDLHELTEALGAAKLRVEGCSSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDMARVSFHFVR 188 (264)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~ 188 (264)
++.....++||+-. ..++..|..+|.+|...| ++.+|..+|-.
T Consensus 64 --------------------~~A~~~~~~al~~~-------p~~~~a~~~lg~~~~~~~---~~~~A~~~~~~ 106 (126)
T 4gco_A 64 --------------------QRALDDCDTCIRLD-------SKFIKGYIRKAACLVAMR---EWSKAQRAYED 106 (126)
T ss_dssp --------------------HHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred --------------------HHHHHHHHHHHHhh-------hhhhHHHHHHHHHHHHCC---CHHHHHHHHHH
Confidence 11145556666542 246889999999999999 99999988853
No 55
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=88.53 E-value=11 Score=32.27 Aligned_cols=68 Identities=12% Similarity=0.016 Sum_probs=43.0
Q ss_pred CCHHHHHHHHHHHHhcCCCcChHhhhhhhhcCCChHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhcCChhHHHHHHHH
Q 024660 158 GSPELHVMLAEYLYSESPELDMARVSFHFVRGNNPEKFASTIVNFMGKCYPGEDDLAVARAILMYLSLGNMKDANYIMDE 237 (264)
Q Consensus 158 Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~~~d~~~~a~~L~ew~~~~~~~e~dlfiaRaVL~~L~l~n~~~A~~~~~~ 237 (264)
++|..+..+|.+|...| ++.+|..+|-..- +-.|.....+...+. .|...++...|...++.
T Consensus 211 ~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al--------------~~~p~~~~~~~~l~~-~~~~~g~~~~A~~~~~~ 272 (365)
T 4eqf_A 211 IDPDLQTGLGVLFHLSG---EFNRAIDAFNAAL--------------TVRPEDYSLWNRLGA-TLANGDRSEEAVEAYTR 272 (365)
T ss_dssp CCHHHHHHHHHHHHHHT---CHHHHHHHHHHHH--------------HHCTTCHHHHHHHHH-HHHHTTCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH--------------HhCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHH
Confidence 46777777787777777 7777776653210 112444444444443 35668888888888888
Q ss_pred HHHHhh
Q 024660 238 VKKQVE 243 (264)
Q Consensus 238 f~~~~~ 243 (264)
.++..|
T Consensus 273 al~~~p 278 (365)
T 4eqf_A 273 ALEIQP 278 (365)
T ss_dssp HHHHCT
T ss_pred HHhcCC
Confidence 776544
No 56
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=88.52 E-value=12 Score=32.52 Aligned_cols=82 Identities=9% Similarity=-0.024 Sum_probs=44.2
Q ss_pred CCHHHHHHHHHHHHhcCCCcChHhhhhhhhcC--CCh---HHHHHHHHHH---------------HhhcCCCchHHHHHH
Q 024660 158 GSPELHVMLAEYLYSESPELDMARVSFHFVRG--NNP---EKFASTIVNF---------------MGKCYPGEDDLAVAR 217 (264)
Q Consensus 158 Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~~--~d~---~~~a~~L~ew---------------~~~~~~~e~dlfiaR 217 (264)
.++..+..+|.++...| ++.+|..+|-.. .+| ..+..+-.-. ..+-.|...+.+...
T Consensus 133 ~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 209 (388)
T 1w3b_A 133 DLYCVRSDLGNLLKALG---RLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINL 209 (388)
T ss_dssp TCTHHHHHHHHHHHTTS---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 35567777777777777 777777666421 112 1111111000 012235555555544
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHHhh
Q 024660 218 AILMYLSLGNMKDANYIMDEVKKQVE 243 (264)
Q Consensus 218 aVL~~L~l~n~~~A~~~~~~f~~~~~ 243 (264)
+. .+...++...|...+..-++..|
T Consensus 210 g~-~~~~~~~~~~A~~~~~~al~~~p 234 (388)
T 1w3b_A 210 GN-VLKEARIFDRAVAAYLRALSLSP 234 (388)
T ss_dssp HH-HHHTTTCTTHHHHHHHHHHHHCT
T ss_pred HH-HHHHcCCHHHHHHHHHHHHhhCc
Confidence 43 34667888888877776665433
No 57
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=88.50 E-value=14 Score=33.42 Aligned_cols=63 Identities=16% Similarity=0.211 Sum_probs=44.2
Q ss_pred HHHHHHhccC-ChhHHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhhCC
Q 024660 19 DKLEKIVNEG-NFYGAQQMYKSISARYVAAQRYSEALDLLHAGACLQLKNNQLTCGAELAVSFVEALVKGK 88 (264)
Q Consensus 19 ~rl~~~i~~G-~~YEAhQ~~RTl~~Ry~~~kk~~eAieLL~~GA~~ll~~~Q~~sa~DL~~llvevl~~~~ 88 (264)
..|++.++.+ .-+.++++.=|++.+ .|++++|++++.+| +..++..-..++..+++++|-+.+
T Consensus 87 ~~l~~l~~~~~~~~~~~~~la~i~~~---~g~~eeAL~~l~~~----i~~~~~~~~lea~~l~vqi~L~~~ 150 (310)
T 3mv2_B 87 EELENLLKDKQNSPYELYLLATAQAI---LGDLDKSLETCVEG----IDNDEAEGTTELLLLAIEVALLNN 150 (310)
T ss_dssp HHHHHTTTTSCCCHHHHHHHHHHHHH---HTCHHHHHHHHHHH----HTSSCSTTHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHH---cCCHHHHHHHHHHH----hccCCCcCcHHHHHHHHHHHHHCC
Confidence 4566666653 446667765555554 79999999999987 455554456777788888888765
No 58
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.25 E-value=4.4 Score=35.69 Aligned_cols=46 Identities=7% Similarity=0.143 Sum_probs=37.1
Q ss_pred hhHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHhcCCCcChHhhhhhhh
Q 024660 138 CSSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDMARVSFHFV 187 (264)
Q Consensus 138 ~~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl 187 (264)
-.+++..++.......+ +.+..+.+..+|++|..-+ ++.+|..++-
T Consensus 154 A~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~~A~~~~~ 199 (434)
T 4b4t_Q 154 SLALINDLLREFKKLDD-KPSLVDVHLLESKVYHKLR---NLAKSKASLT 199 (434)
T ss_dssp HHHHHHHHHHHHTTSSC-STHHHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccc-chhHHHHHHHHHHHHHHhC---cHHHHHHHHH
Confidence 36778888888876543 5677889999999999999 9999988763
No 59
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=88.15 E-value=12 Score=32.21 Aligned_cols=38 Identities=16% Similarity=0.093 Sum_probs=25.0
Q ss_pred HHHHHhhhhcCCCCCCCHHHHHHHHHHHHhcCCCcChHhhhhhhhc
Q 024660 143 KAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDMARVSFHFVR 188 (264)
Q Consensus 143 ~~ai~WS~~~g~~~~Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~ 188 (264)
..|+++-.. -++++.|..+|.+|.+.| ++.+|..+|-.
T Consensus 118 ~~Al~~l~~-----~~~~~~~~~l~~~~~~~g---~~~~A~~~l~~ 155 (291)
T 3mkr_A 118 DAALRTLHQ-----GDSLECMAMTVQILLKLD---RLDLARKELKK 155 (291)
T ss_dssp HHHHHHHTT-----CCSHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHHHhC-----CCCHHHHHHHHHHHHHCC---CHHHHHHHHHH
Confidence 345555543 267777777777777777 77777776643
No 60
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=88.13 E-value=5.1 Score=31.16 Aligned_cols=128 Identities=17% Similarity=0.154 Sum_probs=74.9
Q ss_pred chHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhhCCCCCC
Q 024660 13 PAQENIDKLEKIVNEGNFYGAQQMYKSISARYVAAQRYSEALDLLHAGACLQLKNNQLTCGAELAVSFVEALVKGKVAYD 92 (264)
Q Consensus 13 ~~~r~l~rl~~~i~~G~~YEAhQ~~RTl~~Ry~~~kk~~eAieLL~~GA~~ll~~~Q~~sa~DL~~llvevl~~~~~~~~ 92 (264)
.++..+.+-...+..|+|=+|.+.|+...... .+..+..+.-+..+++.|++..|.+...-.+ .. .| +
T Consensus 5 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~------P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~---~~--~p-~ 72 (176)
T 2r5s_A 5 PDEQLLKQVSELLQQGEHAQALNVIQTLSDEL------QSRGDVKLAKADCLLETKQFELAQELLATIP---LE--YQ-D 72 (176)
T ss_dssp -CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHH------HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCC---GG--GC-C
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhh---hc--cC-C
Confidence 34566777777888999999988887665432 2234555666677778888877655432111 11 12 3
Q ss_pred hhHHHHHHHHHHhCCCCCCCCCCCCCchHHHHHHHHhhhhhhhhhhhHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHh
Q 024660 93 NENLDRVRKIYELFPQIPVPHNLEDDDDLHELTEALGAAKLRVEGCSSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYS 172 (264)
Q Consensus 93 ~~~~~rl~~l~~~~p~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~~~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~~~~~ 172 (264)
......+..+ ......... + -...++++++-. -++++.|..+|.++..
T Consensus 73 ~~~~~~~~~~-~~~~~~~~~-----------------------~-a~~~~~~al~~~-------P~~~~~~~~la~~~~~ 120 (176)
T 2r5s_A 73 NSYKSLIAKL-ELHQQAAES-----------------------P-ELKRLEQELAAN-------PDNFELACELAVQYNQ 120 (176)
T ss_dssp HHHHHHHHHH-HHHHHHTSC-----------------------H-HHHHHHHHHHHS-------TTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHH-HHHhhcccc-----------------------h-HHHHHHHHHHhC-------CCCHHHHHHHHHHHHH
Confidence 3222111111 100000000 0 034556666422 2689999999999999
Q ss_pred cCCCcChHhhhhhhh
Q 024660 173 ESPELDMARVSFHFV 187 (264)
Q Consensus 173 e~~~~~~~~A~~Hfl 187 (264)
.| ++.+|..+|-
T Consensus 121 ~g---~~~~A~~~~~ 132 (176)
T 2r5s_A 121 VG---RDEEALELLW 132 (176)
T ss_dssp TT---CHHHHHHHHH
T ss_pred cc---cHHHHHHHHH
Confidence 99 9999998885
No 61
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=87.88 E-value=2.9 Score=39.29 Aligned_cols=42 Identities=12% Similarity=0.127 Sum_probs=29.1
Q ss_pred hHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHhcCCCcChHhhhh
Q 024660 139 SSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDMARVSF 184 (264)
Q Consensus 139 ~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~~~~~e~~~~~~~~A~~ 184 (264)
..+...+|.|+++.. ..+=.-.|...+|..|+..| +|.+|..
T Consensus 79 ~~~~~~~~~~a~~~~-r~flr~~l~~kL~~l~~~~~---~y~~a~~ 120 (394)
T 3txn_A 79 VQLCKDCIEWAKQEK-RTFLRQSLEARLIALYFDTA---LYTEALA 120 (394)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhh---hHHHHHH
Confidence 778889999999641 11112225557899999999 8887743
No 62
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=87.36 E-value=5.8 Score=29.57 Aligned_cols=40 Identities=15% Similarity=0.096 Sum_probs=30.4
Q ss_pred hHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHhcCCCcChHhhhhhhhc
Q 024660 139 SSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDMARVSFHFVR 188 (264)
Q Consensus 139 ~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~ 188 (264)
..+++++++.. ..++..+..+|.++...| ++.+|..+|-.
T Consensus 130 ~~~~~~~~~~~-------~~~~~~~~~la~~~~~~~---~~~~A~~~~~~ 169 (186)
T 3as5_A 130 IDSFKIALGLR-------PNEGKVHRAIAFSYEQMG---RHEEALPHFKK 169 (186)
T ss_dssp HHHHHHHHHHC-------TTCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHHHHhcC-------ccchHHHHHHHHHHHHcC---CHHHHHHHHHH
Confidence 45556666543 256899999999999999 99999887743
No 63
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=87.36 E-value=23 Score=39.04 Aligned_cols=54 Identities=11% Similarity=0.124 Sum_probs=37.9
Q ss_pred HHhccCChhHHHHHHHHHH------HHHH-hhhCHHHHHHHH---------HHHHHHHHHcCCcccHHHH
Q 024660 23 KIVNEGNFYGAQQMYKSIS------ARYV-AAQRYSEALDLL---------HAGACLQLKNNQLTCGAEL 76 (264)
Q Consensus 23 ~~i~~G~~YEAhQ~~RTl~------~Ry~-~~kk~~eAieLL---------~~GA~~ll~~~Q~~sa~DL 76 (264)
-.++-|.|-||-+.|+-.- +.+. +-++|++|+++. ++-|..+++.|++..|.|-
T Consensus 1058 Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIds 1127 (1630)
T 1xi4_A 1058 IAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDS 1127 (1630)
T ss_pred HHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 3477888999988887542 3333 457788887776 6777788888887776553
No 64
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=87.28 E-value=13 Score=31.86 Aligned_cols=139 Identities=14% Similarity=0.058 Sum_probs=75.3
Q ss_pred hHHHHHHHHHHhcc---CChhHHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhhCCCC
Q 024660 14 AQENIDKLEKIVNE---GNFYGAQQMYKSISARYVAAQRYSEALDLLHAGACLQLKNNQLTCGAELAVSFVEALVKGKVA 90 (264)
Q Consensus 14 ~~r~l~rl~~~i~~---G~~YEAhQ~~RTl~~Ry~~~kk~~eAieLL~~GA~~ll~~~Q~~sa~DL~~llvevl~~~~~~ 90 (264)
.++.++.++..+.. .+.-+++-+. ..=|...|++++|++.+.. ..-.+....+..+|...|-.
T Consensus 81 ~~~A~~~l~~ll~~~~~P~~~~~~~~l---a~~~~~~g~~~~Al~~l~~-----------~~~~~~~~~l~~~~~~~g~~ 146 (291)
T 3mkr_A 81 RDAIVAELDREMSRSVDVTNTTFLLMA---ASIYFYDQNPDAALRTLHQ-----------GDSLECMAMTVQILLKLDRL 146 (291)
T ss_dssp HHHHHHHHHHHHHSCCCCSCHHHHHHH---HHHHHHTTCHHHHHHHHTT-----------CCSHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHHH---HHHHHHCCCHHHHHHHHhC-----------CCCHHHHHHHHHHHHHCCCH
Confidence 45566666665543 3344443332 2334567888888877664 12234455555666655421
Q ss_pred CChhHHHHHHHHHHhCCCCCCCCCCCCCchHHHHHHH---HhhhhhhhhhhhHHHHHHHHhhhhcCCCCCCCHHHHHHHH
Q 024660 91 YDNENLDRVRKIYELFPQIPVPHNLEDDDDLHELTEA---LGAAKLRVEGCSSFLKAAIKWSIEFGAPKTGSPELHVMLA 167 (264)
Q Consensus 91 ~~~~~~~rl~~l~~~~p~~~~~r~l~~~~~~~~~~~~---~~~~~~~~~~~~~fl~~ai~WS~~~g~~~~Gdp~LH~~la 167 (264)
++...-+.+++..-|.. ...++-++ ......+.++-....++++.- . | .+|.++..+|
T Consensus 147 --~~A~~~l~~~~~~~p~~----------~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~---~---p-~~~~~~~~la 207 (291)
T 3mkr_A 147 --DLARKELKKMQDQDEDA----------TLTQLATAWVSLAAGGEKLQDAYYIFQEMADK---C---S-PTLLLLNGQA 207 (291)
T ss_dssp --HHHHHHHHHHHHHCTTC----------HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH---S---C-CCHHHHHHHH
T ss_pred --HHHHHHHHHHHhhCcCc----------HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh---C---C-CcHHHHHHHH
Confidence 23334444444442211 11111111 111112333335566666654 1 1 4899999999
Q ss_pred HHHHhcCCCcChHhhhhhhhc
Q 024660 168 EYLYSESPELDMARVSFHFVR 188 (264)
Q Consensus 168 ~~~~~e~~~~~~~~A~~Hfl~ 188 (264)
.++.+.| ++.+|+.+|-.
T Consensus 208 ~~~~~~g---~~~eA~~~l~~ 225 (291)
T 3mkr_A 208 ACHMAQG---RWEAAEGVLQE 225 (291)
T ss_dssp HHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHcC---CHHHHHHHHHH
Confidence 9999999 99999988854
No 65
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=87.12 E-value=11 Score=30.49 Aligned_cols=40 Identities=8% Similarity=-0.016 Sum_probs=29.7
Q ss_pred hHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHhcCCCcChHhhhhhhhc
Q 024660 139 SSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDMARVSFHFVR 188 (264)
Q Consensus 139 ~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~ 188 (264)
..+.++|++-. ..++..+..+|.+|...| ++.+|..+|-.
T Consensus 97 ~~~~~~al~~~-------~~~~~~~~~la~~~~~~g---~~~~A~~~~~~ 136 (275)
T 1xnf_A 97 YEAFDSVLELD-------PTYNYAHLNRGIALYYGG---RDKLAQDDLLA 136 (275)
T ss_dssp HHHHHHHHHHC-------TTCTHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHHHHhcC-------ccccHHHHHHHHHHHHhc---cHHHHHHHHHH
Confidence 55666666542 245788999999999999 89888887753
No 66
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=86.76 E-value=17 Score=32.59 Aligned_cols=94 Identities=13% Similarity=0.173 Sum_probs=58.4
Q ss_pred hHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHhcCCCcChHhhhhhhhcCC--ChH------H------HHHHHHHH--
Q 024660 139 SSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDMARVSFHFVRGN--NPE------K------FASTIVNF-- 202 (264)
Q Consensus 139 ~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~~~--d~~------~------~a~~L~ew-- 202 (264)
...++++++-. ..++..+..+|.++...| ++.+|..+|-..- +|. . .+.++...
T Consensus 364 ~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 433 (537)
T 3fp2_A 364 EAFFNETKLKF-------PTLPEVPTFFAEILTDRG---DFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSS 433 (537)
T ss_dssp HHHHHHHHHHC-------TTCTHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhC-------CCChHHHHHHHHHHHHhC---CHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhh
Confidence 45555555432 256889999999999999 9999988875421 111 0 11121111
Q ss_pred -----------------Hh---hcCCCchHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhh
Q 024660 203 -----------------MG---KCYPGEDDLAVARAILMYLSLGNMKDANYIMDEVKKQVE 243 (264)
Q Consensus 203 -----------------~~---~~~~~e~dlfiaRaVL~~L~l~n~~~A~~~~~~f~~~~~ 243 (264)
+. +-.|...+.+...+. .|...|+...|...++...+..|
T Consensus 434 ~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~-~~~~~g~~~~A~~~~~~al~~~~ 493 (537)
T 3fp2_A 434 QDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQ-LKLQMEKIDEAIELFEDSAILAR 493 (537)
T ss_dssp C----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH-HHHHTTCHHHHHHHHHHHHHHC-
T ss_pred ccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHHhccHHHHHHHHHHHHHhCC
Confidence 11 234555565555444 46789999999999998887544
No 67
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=85.77 E-value=8.1 Score=27.87 Aligned_cols=40 Identities=13% Similarity=0.107 Sum_probs=30.4
Q ss_pred hHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHhcCCCcChHhhhhhhhc
Q 024660 139 SSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDMARVSFHFVR 188 (264)
Q Consensus 139 ~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~ 188 (264)
...+++|++-. -+++..+..+|.++...+ ++.+|..+|-.
T Consensus 63 ~~~~~~al~~~-------p~~~~~~~~l~~~~~~~~---~~~~A~~~~~~ 102 (137)
T 3q49_B 63 LADCRRALELD-------GQSVKAHFFLGQCQLEME---SYDEAIANLQR 102 (137)
T ss_dssp HHHHHHHHHHC-------TTCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHHHHHhC-------chhHHHHHHHHHHHHHHh---hHHHHHHHHHH
Confidence 45555555532 247889999999999999 99999888854
No 68
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=85.18 E-value=8.6 Score=27.67 Aligned_cols=40 Identities=10% Similarity=-0.125 Sum_probs=30.0
Q ss_pred hHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHhcCCCcChHhhhhhhhc
Q 024660 139 SSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDMARVSFHFVR 188 (264)
Q Consensus 139 ~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~ 188 (264)
....++|++-. -.++..+..+|.++...| ++.+|..+|-.
T Consensus 58 ~~~~~~al~~~-------p~~~~~~~~lg~~~~~~~---~~~~A~~~~~~ 97 (126)
T 3upv_A 58 IADCNKAIEKD-------PNFVRAYIRKATAQIAVK---EYASALETLDA 97 (126)
T ss_dssp HHHHHHHHHHC-------TTCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHHHHHhC-------CCcHHHHHHHHHHHHHHh---CHHHHHHHHHH
Confidence 44555555542 246889999999999999 99999888753
No 69
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=85.15 E-value=15 Score=30.31 Aligned_cols=212 Identities=15% Similarity=0.175 Sum_probs=113.0
Q ss_pred hHHHHHHHHHHhccCChhHHHHHHHHHHHH--------------HHhhhCHHHHHHHHHHHHHHHHHcCCcccHHHHHHH
Q 024660 14 AQENIDKLEKIVNEGNFYGAQQMYKSISAR--------------YVAAQRYSEALDLLHAGACLQLKNNQLTCGAELAVS 79 (264)
Q Consensus 14 ~~r~l~rl~~~i~~G~~YEAhQ~~RTl~~R--------------y~~~kk~~eAieLL~~GA~~ll~~~Q~~sa~DL~~l 79 (264)
....+.+-...+..|+|=+|.+.++..... |...+++++|++.+...... ..+. .+....
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~----~~~~~~ 94 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKD----IAVHAA 94 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTC----HHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CcCC----HHHHHH
Confidence 344566667778889999998888776443 34567777777776654332 0111 223333
Q ss_pred HHHHHhhCCCCCChhHHHHHHHHHHhCCCCCCCCCCC-----CCchHHHHHHH-HhhhhhhhhhhhHHHHHHHHhhhhcC
Q 024660 80 FVEALVKGKVAYDNENLDRVRKIYELFPQIPVPHNLE-----DDDDLHELTEA-LGAAKLRVEGCSSFLKAAIKWSIEFG 153 (264)
Q Consensus 80 lvevl~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~l~-----~~~~~~~~~~~-~~~~~~~~~~~~~fl~~ai~WS~~~g 153 (264)
+..+|...+- -++.+.-+.+++...|........- +......+... ........++...+++++++...
T Consensus 95 la~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--- 169 (327)
T 3cv0_A 95 LAVSHTNEHN--ANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNP--- 169 (327)
T ss_dssp HHHHHHHTTC--HHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHST---
T ss_pred HHHHHHHcCC--HHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCC---
Confidence 3444544432 1344455555555555433211000 00000000000 11122222333556666665432
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCcChHhhhhhhhcC-----CChHH---HHHHHHH---------HHh---hcCCCchHH
Q 024660 154 APKTGSPELHVMLAEYLYSESPELDMARVSFHFVRG-----NNPEK---FASTIVN---------FMG---KCYPGEDDL 213 (264)
Q Consensus 154 ~~~~Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~~-----~d~~~---~a~~L~e---------w~~---~~~~~e~dl 213 (264)
.++..+..+|.++...+ ++.+|..+|-.. +++.. ++.++.. +.. +..|...+.
T Consensus 170 ----~~~~~~~~la~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 242 (327)
T 3cv0_A 170 ----NDAQLHASLGVLYNLSN---NYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRV 242 (327)
T ss_dssp ----TCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred ----CCHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Confidence 37889999999999999 999888887542 22322 2222211 001 123445555
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHHhhh
Q 024660 214 AVARAILMYLSLGNMKDANYIMDEVKKQVEN 244 (264)
Q Consensus 214 fiaRaVL~~L~l~n~~~A~~~~~~f~~~~~~ 244 (264)
+...+. .|+..++...|...++...+..|.
T Consensus 243 ~~~l~~-~~~~~g~~~~A~~~~~~a~~~~~~ 272 (327)
T 3cv0_A 243 MYNMAV-SYSNMSQYDLAAKQLVRAIYMQVG 272 (327)
T ss_dssp HHHHHH-HHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHH-HHHHhccHHHHHHHHHHHHHhCCc
Confidence 554443 467789999999999988876654
No 70
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=84.90 E-value=2 Score=33.16 Aligned_cols=94 Identities=13% Similarity=0.054 Sum_probs=50.9
Q ss_pred HHHHHhhhhcCCCCCCCHHHHHHHHHHHHhcCCCcChHhhhhhhhcC-----CChH---HHHHHHHHH---------Hh-
Q 024660 143 KAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDMARVSFHFVRG-----NNPE---KFASTIVNF---------MG- 204 (264)
Q Consensus 143 ~~ai~WS~~~g~~~~Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~~-----~d~~---~~a~~L~ew---------~~- 204 (264)
++||.+-.+.-....-+|..|..+|.+|++.+ +|.+|..+|-.. +++. .+|.+.... +.
T Consensus 14 e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~---~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~ 90 (150)
T 4ga2_A 14 ERYIASVQGSTPSPRQKSIKGFYFAKLYYEAK---EYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRR 90 (150)
T ss_dssp HHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCcccHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHH
Confidence 44455544432222345667788899999999 888888887642 2232 222222211 00
Q ss_pred --hcCCCchHHHHHHHHHHHHhcCChhH-HHHHHHHHHH
Q 024660 205 --KCYPGEDDLAVARAILMYLSLGNMKD-ANYIMDEVKK 240 (264)
Q Consensus 205 --~~~~~e~dlfiaRaVL~~L~l~n~~~-A~~~~~~f~~ 240 (264)
+-.|...+.+...+.+ |+..++... |..+++.-++
T Consensus 91 al~~~p~~~~~~~~la~~-~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 91 SVELNPTQKDLVLKIAEL-LCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp HHHHCTTCHHHHHHHHHH-HHHHCSSSSHHHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHH-HHHcCChHHHHHHHHHHHHH
Confidence 2246666666665543 455666654 4444455444
No 71
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=84.88 E-value=12 Score=29.46 Aligned_cols=40 Identities=8% Similarity=-0.035 Sum_probs=30.5
Q ss_pred hHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHhcCCCcChHhhhhhhhc
Q 024660 139 SSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDMARVSFHFVR 188 (264)
Q Consensus 139 ~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~ 188 (264)
..+++++++.. ..++..+..+|.+|.+.| ++.+|..+|-.
T Consensus 179 ~~~~~~~~~~~-------~~~~~~~~~la~~~~~~~---~~~~A~~~~~~ 218 (243)
T 2q7f_A 179 LSQFAAVTEQD-------PGHADAFYNAGVTYAYKE---NREKALEMLDK 218 (243)
T ss_dssp HHHHHHHHHHC-------TTCHHHHHHHHHHHHHTT---CTTHHHHHHHH
T ss_pred HHHHHHHHHhC-------cccHHHHHHHHHHHHHcc---CHHHHHHHHHH
Confidence 45556665542 257889999999999999 99999887753
No 72
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=84.55 E-value=6.9 Score=29.12 Aligned_cols=100 Identities=11% Similarity=0.036 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhhCCCCCChhHHHHHHHHHHhCCCCCCCC
Q 024660 34 QQMYKSISARYVAAQRYSEALDLLHAGACLQLKNNQLTCGAELAVSFVEALVKGKVAYDNENLDRVRKIYELFPQIPVPH 113 (264)
Q Consensus 34 hQ~~RTl~~Ry~~~kk~~eAieLL~~GA~~ll~~~Q~~sa~DL~~llvevl~~~~~~~~~~~~~rl~~l~~~~p~~~~~r 113 (264)
=..++-+=+-|.++|+|++|++........ -|-+......+..++.....
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~-------------------------~p~~~~~~~nlg~~~~~~~~----- 57 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIEL-------------------------DPSNITFYNNKAAVYFEEKK----- 57 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------------CTTCHHHHHHHHHHHHHTTC-----
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------------------------CCCCHHHHHhHHHHHHHhhh-----
Confidence 344566777788889999998877654321 12222334445555544321
Q ss_pred CCCCCchHHHHHHHHhhhhhhhhhhhHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHhcCCCcChHhhhhhhh
Q 024660 114 NLEDDDDLHELTEALGAAKLRVEGCSSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDMARVSFHFV 187 (264)
Q Consensus 114 ~l~~~~~~~~~~~~~~~~~~~~~~~~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl 187 (264)
.++.....++||.-..+.......-...|..+|.++...+ ++.+|..+|-
T Consensus 58 ---------------------~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~---~~~~A~~~~~ 107 (127)
T 4gcn_A 58 ---------------------FAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQN---DLSLAVQWFH 107 (127)
T ss_dssp ---------------------HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred ---------------------HHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHHcC---CHHHHHHHHH
Confidence 1122555666666554432111112346888999999999 9999988874
No 73
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=84.32 E-value=17 Score=30.25 Aligned_cols=83 Identities=16% Similarity=0.105 Sum_probs=49.3
Q ss_pred CCHHHHHHHHHHHHhcCCCcChHhhhhhhhcC-----CChHH---HHHHHHH---------HHh---hcCCCchHHHHH-
Q 024660 158 GSPELHVMLAEYLYSESPELDMARVSFHFVRG-----NNPEK---FASTIVN---------FMG---KCYPGEDDLAVA- 216 (264)
Q Consensus 158 Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~~-----~d~~~---~a~~L~e---------w~~---~~~~~e~dlfia- 216 (264)
.++..+..+|.++...+ ++.+|..+|-.. +++.. ++.+... ++. +-.|...+.+..
T Consensus 152 ~~~~~~~~~~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 228 (359)
T 3ieg_A 152 WDAELRELRAECFIKEG---EPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHY 228 (359)
T ss_dssp TCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CchHHHHHHHHHHHHCC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHH
Confidence 67899999999999999 999888887532 22332 2222211 000 122333332211
Q ss_pred ----------HHHHHHHhcCChhHHHHHHHHHHHHhh
Q 024660 217 ----------RAILMYLSLGNMKDANYIMDEVKKQVE 243 (264)
Q Consensus 217 ----------RaVL~~L~l~n~~~A~~~~~~f~~~~~ 243 (264)
.....+...++...|...++...+..|
T Consensus 229 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~ 265 (359)
T 3ieg_A 229 KQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEP 265 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 113346778899999888888776543
No 74
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=83.85 E-value=11 Score=28.20 Aligned_cols=40 Identities=13% Similarity=0.054 Sum_probs=30.9
Q ss_pred hHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHhcCCCcChHhhhhhhhc
Q 024660 139 SSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDMARVSFHFVR 188 (264)
Q Consensus 139 ~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~ 188 (264)
....++|+.-. -.+|..|..+|.+|...| ++.+|..+|-.
T Consensus 72 ~~~~~~al~~~-------p~~~~~~~~lg~~~~~~g---~~~~A~~~~~~ 111 (142)
T 2xcb_A 72 LQSYSYGALMD-------INEPRFPFHAAECHLQLG---DLDGAESGFYS 111 (142)
T ss_dssp HHHHHHHHHHC-------TTCTHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHHHHhcC-------CCCcHHHHHHHHHHHHcC---CHHHHHHHHHH
Confidence 45556666542 267899999999999999 99999988743
No 75
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=83.70 E-value=5.6 Score=28.75 Aligned_cols=86 Identities=9% Similarity=-0.046 Sum_probs=60.0
Q ss_pred hHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHhcCCCcChHhhhhhhhcCCChHHHHHHHHHHHhhcCCCchHHHHHHH
Q 024660 139 SSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDMARVSFHFVRGNNPEKFASTIVNFMGKCYPGEDDLAVARA 218 (264)
Q Consensus 139 ~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~~~d~~~~a~~L~ew~~~~~~~e~dlfiaRa 218 (264)
....++||+-. -.++..+..+|.+|.+.+ ++.+|..+|-..- +-.|...+.+..++
T Consensus 24 ~~~~~~al~~~-------p~~~~~~~~~a~~~~~~~---~~~~A~~~~~~al--------------~~~p~~~~~~~~lg 79 (126)
T 3upv_A 24 VKAYTEMIKRA-------PEDARGYSNRAAALAKLM---SFPEAIADCNKAI--------------EKDPNFVRAYIRKA 79 (126)
T ss_dssp HHHHHHHHHHC-------TTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH--------------HHCTTCHHHHHHHH
T ss_pred HHHHHHHHHhC-------CCChHHHHHHHHHHHHhc---CHHHHHHHHHHHH--------------HhCCCcHHHHHHHH
Confidence 45555666543 257899999999999999 9999887774311 11345556666666
Q ss_pred HHHHHhcCChhHHHHHHHHHHHHhhhhhcCC
Q 024660 219 ILMYLSLGNMKDANYIMDEVKKQVENKQLQL 249 (264)
Q Consensus 219 VL~~L~l~n~~~A~~~~~~f~~~~~~~~~~~ 249 (264)
.+ |..+++...|...+....+..|+....|
T Consensus 80 ~~-~~~~~~~~~A~~~~~~al~~~p~~~~~p 109 (126)
T 3upv_A 80 TA-QIAVKEYASALETLDAARTKDAEVNNGS 109 (126)
T ss_dssp HH-HHHTTCHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HH-HHHHhCHHHHHHHHHHHHHhCcccCCch
Confidence 54 5778999999999999988775444333
No 76
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=83.69 E-value=17 Score=34.69 Aligned_cols=140 Identities=13% Similarity=0.062 Sum_probs=93.9
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHHHHHhh--hCHHHHHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhhCCCCC---C
Q 024660 18 IDKLEKIVNEGNFYGAQQMYKSISARYVAA--QRYSEALDLLHAGACLQLKNNQLTCGAELAVSFVEALVKGKVAY---D 92 (264)
Q Consensus 18 l~rl~~~i~~G~~YEAhQ~~RTl~~Ry~~~--kk~~eAieLL~~GA~~ll~~~Q~~sa~DL~~llvevl~~~~~~~---~ 92 (264)
+++.+..-..|+|=||..+|+-......+. ..+.+-...+..=|..+...|++..|..+..-.++++++.-=+- .
T Consensus 313 le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~ 392 (490)
T 3n71_A 313 LEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQL 392 (490)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHH
Confidence 334444557889999998887666555332 46667788888888888889999999999988888887653222 2
Q ss_pred hhHHHHHHHHHHhCCCCCCCCCCCCCchHHHHHHHHhhhhhhhhhhhHHHHHHHHhhhhc-CCCCCCCHH---HHHHHHH
Q 024660 93 NENLDRVRKIYELFPQIPVPHNLEDDDDLHELTEALGAAKLRVEGCSSFLKAAIKWSIEF-GAPKTGSPE---LHVMLAE 168 (264)
Q Consensus 93 ~~~~~rl~~l~~~~p~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~~~~fl~~ai~WS~~~-g~~~~Gdp~---LH~~la~ 168 (264)
-..+.+|..++..... .++=..+..+|+.--... |. .||. +..++++
T Consensus 393 a~~l~nLa~~~~~~G~--------------------------~~eA~~~~~~Al~i~~~~lG~---~Hp~~~~~~~~l~~ 443 (490)
T 3n71_A 393 GMAVMRAGLTNWHAGH--------------------------IEVGHGMICKAYAILLVTHGP---SHPITKDLEAMRMQ 443 (490)
T ss_dssp HHHHHHHHHHHHHTTC--------------------------HHHHHHHHHHHHHHHHHHTCT---TSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCC--------------------------HHHHHHHHHHHHHHHHHHhCC---CChHHHHHHHHHHH
Confidence 3456777777775321 112267778888665554 53 6774 4567777
Q ss_pred HHHhcCCCcChHhhhhhhhcC
Q 024660 169 YLYSESPELDMARVSFHFVRG 189 (264)
Q Consensus 169 ~~~~e~~~~~~~~A~~Hfl~~ 189 (264)
.+.+-+ .|.+|+..+-..
T Consensus 444 ~~~e~~---~~~~ae~~~~~~ 461 (490)
T 3n71_A 444 TEMELR---MFRQNEFMYHKM 461 (490)
T ss_dssp HHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHH---HHHHHHHHHHHH
Confidence 777666 677777666543
No 77
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=83.26 E-value=15 Score=31.33 Aligned_cols=29 Identities=14% Similarity=0.132 Sum_probs=25.5
Q ss_pred CCCHHHHHHHHHHHHhcCCCcChHhhhhhhhc
Q 024660 157 TGSPELHVMLAEYLYSESPELDMARVSFHFVR 188 (264)
Q Consensus 157 ~Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~ 188 (264)
-+++..|..+|.+|...| ++.+|..+|-.
T Consensus 69 p~~~~~~~~lg~~~~~~g---~~~~A~~~~~~ 97 (281)
T 2c2l_A 69 GQSVKAHFFLGQCQLEME---SYDEAIANLQR 97 (281)
T ss_dssp TTCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcC---CHHHHHHHHHH
Confidence 367889999999999999 99999998854
No 78
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=83.22 E-value=13 Score=28.99 Aligned_cols=28 Identities=7% Similarity=-0.058 Sum_probs=24.5
Q ss_pred CCHHHHHHHHHHHHhcCCCcChHhhhhhhhc
Q 024660 158 GSPELHVMLAEYLYSESPELDMARVSFHFVR 188 (264)
Q Consensus 158 Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~ 188 (264)
.++..+..+|.+|++.| ++.+|..+|-.
T Consensus 119 ~~~~~~~~l~~~~~~~g---~~~~A~~~~~~ 146 (213)
T 1hh8_A 119 FACEVLYNIAFMYAKKE---EWKKAEEQLAL 146 (213)
T ss_dssp EHHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHcc---CHHHHHHHHHH
Confidence 35689999999999999 99999988764
No 79
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=82.85 E-value=17 Score=33.67 Aligned_cols=78 Identities=14% Similarity=0.021 Sum_probs=44.0
Q ss_pred hHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHhc--------CCCcChHhhhhhhhcCCChHHHHHHHHHHHhhcCC--
Q 024660 139 SSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSE--------SPELDMARVSFHFVRGNNPEKFASTIVNFMGKCYP-- 208 (264)
Q Consensus 139 ~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~~~~~e--------~~~~~~~~A~~Hfl~~~d~~~~a~~L~ew~~~~~~-- 208 (264)
....++|++-. -.++..+..+|.+|... + ++.+|..+|-..- +-.|
T Consensus 199 ~~~~~~al~~~-------p~~~~~~~~lg~~~~~~~~~~~~~~g---~~~~A~~~~~~al--------------~~~p~~ 254 (474)
T 4abn_A 199 VRQAKLAVQMD-------VLDGRSWYILGNAYLSLYFNTGQNPK---ISQQALSAYAQAE--------------KVDRKA 254 (474)
T ss_dssp HHHHHHHHHHC-------TTCHHHHHHHHHHHHHHHHHTTCCHH---HHHHHHHHHHHHH--------------HHCGGG
T ss_pred HHHHHHHHHhC-------CCCHHHHHHHHHHHHHHHHhhccccc---hHHHHHHHHHHHH--------------HhCCCc
Confidence 44555555532 35788999999999977 6 7777766664311 0122
Q ss_pred -CchHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 024660 209 -GEDDLAVARAILMYLSLGNMKDANYIMDEVKKQ 241 (264)
Q Consensus 209 -~e~dlfiaRaVL~~L~l~n~~~A~~~~~~f~~~ 241 (264)
...+.+..++.+ |...++...|...+....+.
T Consensus 255 ~~~~~~~~~lg~~-~~~~g~~~~A~~~~~~al~l 287 (474)
T 4abn_A 255 SSNPDLHLNRATL-HKYEESYGEALEGFSQAAAL 287 (474)
T ss_dssp GGCHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHh
Confidence 334444444432 34456666666555555543
No 80
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=82.62 E-value=29 Score=31.75 Aligned_cols=45 Identities=11% Similarity=-0.071 Sum_probs=34.4
Q ss_pred HHHHHHhhhhcCCCCCCCHHHHHHHHHHHHhc-CCCcChHhhhhhhhcC
Q 024660 142 LKAAIKWSIEFGAPKTGSPELHVMLAEYLYSE-SPELDMARVSFHFVRG 189 (264)
Q Consensus 142 l~~ai~WS~~~g~~~~Gdp~LH~~la~~~~~e-~~~~~~~~A~~Hfl~~ 189 (264)
...|+.|=.+.- .|+|.-+..+|.+|... +...++.+|..+|-.+
T Consensus 303 ~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A 348 (452)
T 3e4b_A 303 AKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTA 348 (452)
T ss_dssp HHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHH
Confidence 356788887654 79999999999999873 1244889999998764
No 81
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=82.35 E-value=23 Score=30.43 Aligned_cols=47 Identities=11% Similarity=-0.085 Sum_probs=35.6
Q ss_pred hHHHHHHHHhhhhcCCC-CCCCHHHHHHHHHHHHhcCCCcChHhhhhhhhc
Q 024660 139 SSFLKAAIKWSIEFGAP-KTGSPELHVMLAEYLYSESPELDMARVSFHFVR 188 (264)
Q Consensus 139 ~~fl~~ai~WS~~~g~~-~~Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~ 188 (264)
.....+++......+.. ..+....+..+|.+++..| ++.+|+.++-.
T Consensus 113 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~ 160 (373)
T 1hz4_A 113 WETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWA---RLDEAEASARS 160 (373)
T ss_dssp HHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhc---CHHHHHHHHHH
Confidence 66778888887765432 1344567888999999999 99999988753
No 82
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=81.68 E-value=11 Score=26.48 Aligned_cols=68 Identities=15% Similarity=0.027 Sum_probs=46.0
Q ss_pred CCHHHHHHHHHHHHhcCCCcChHhhhhhhhcCCChHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhcCChhHHHHHHHH
Q 024660 158 GSPELHVMLAEYLYSESPELDMARVSFHFVRGNNPEKFASTIVNFMGKCYPGEDDLAVARAILMYLSLGNMKDANYIMDE 237 (264)
Q Consensus 158 Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~~~d~~~~a~~L~ew~~~~~~~e~dlfiaRaVL~~L~l~n~~~A~~~~~~ 237 (264)
.+|..+..+|.+|++.| ++.+|..+|-..- +-.|...+.+...+. .|...++...|...+..
T Consensus 5 ~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al--------------~~~p~~~~a~~~lg~-~~~~~g~~~~A~~~~~~ 66 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHD---NASRALALFEELV--------------ETDPDYVGTYYHLGK-LYERLDRTDDAIDTYAQ 66 (100)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH--------------HHSTTCTHHHHHHHH-HHHHTTCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcC---CHHHHHHHHHHHH--------------HhCCCcHHHHHHHHH-HHHHcCCHHHHHHHHHH
Confidence 57899999999999999 9999998874321 112344444444444 34567777777777776
Q ss_pred HHHHhh
Q 024660 238 VKKQVE 243 (264)
Q Consensus 238 f~~~~~ 243 (264)
.++..+
T Consensus 67 al~l~~ 72 (100)
T 3ma5_A 67 GIEVAR 72 (100)
T ss_dssp HHHHHH
T ss_pred HHhhhh
Confidence 665443
No 83
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=80.86 E-value=12 Score=29.21 Aligned_cols=121 Identities=8% Similarity=0.014 Sum_probs=72.7
Q ss_pred hHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhhCCCCCCh
Q 024660 14 AQENIDKLEKIVNEGNFYGAQQMYKSISARYVAAQRYSEALDLLHAGACLQLKNNQLTCGAELAVSFVEALVKGKVAYDN 93 (264)
Q Consensus 14 ~~r~l~rl~~~i~~G~~YEAhQ~~RTl~~Ry~~~kk~~eAieLL~~GA~~ll~~~Q~~sa~DL~~llvevl~~~~~~~~~ 93 (264)
++.+-.++..-+.+|..|+-- - +-..+-.+.++.=+..+.+.|++..|.+...-.++. -|-+.
T Consensus 8 ~~~~~~~l~~~~~~~~~l~~a-----------l-~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~-----~P~~~ 70 (151)
T 3gyz_A 8 NESISTAVIDAINSGATLKDI-----------N-AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY-----DFYNV 70 (151)
T ss_dssp -CHHHHHHHHHHHTSCCTGGG-----------C-CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH
T ss_pred HHHHHHHHHHHHHCCCCHHHH-----------h-CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCH
Confidence 455667777777777665311 1 112234455566666666677776666665544432 23344
Q ss_pred hHHHHHHHHHHhCCCCCCCCCCCCCchHHHHHHHHhhhhhhhhhhhHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHhc
Q 024660 94 ENLDRVRKIYELFPQIPVPHNLEDDDDLHELTEALGAAKLRVEGCSSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSE 173 (264)
Q Consensus 94 ~~~~rl~~l~~~~p~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~~~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~~~~~e 173 (264)
.....+..++.....- ++-....++|++-. -.+|..|..+|.+|.+.
T Consensus 71 ~~~~~lg~~~~~~g~~--------------------------~~Ai~~~~~al~l~-------P~~~~~~~~lg~~~~~l 117 (151)
T 3gyz_A 71 DYIMGLAAIYQIKEQF--------------------------QQAADLYAVAFALG-------KNDYTPVFHTGQCQLRL 117 (151)
T ss_dssp HHHHHHHHHHHHTTCH--------------------------HHHHHHHHHHHHHS-------SSCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHccH--------------------------HHHHHHHHHHHhhC-------CCCcHHHHHHHHHHHHc
Confidence 4555666666544211 11145555555532 25789999999999999
Q ss_pred CCCcChHhhhhhhh
Q 024660 174 SPELDMARVSFHFV 187 (264)
Q Consensus 174 ~~~~~~~~A~~Hfl 187 (264)
| ++.+|..+|-
T Consensus 118 g---~~~eA~~~~~ 128 (151)
T 3gyz_A 118 K---APLKAKECFE 128 (151)
T ss_dssp T---CHHHHHHHHH
T ss_pred C---CHHHHHHHHH
Confidence 9 9999999885
No 84
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=80.08 E-value=17 Score=27.75 Aligned_cols=95 Identities=13% Similarity=0.061 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhhCCCCCChhHHHHHHHHHHhCCCCCCCCCCCCCchHHHHHHHHhhhh
Q 024660 53 ALDLLHAGACLQLKNNQLTCGAELAVSFVEALVKGKVAYDNENLDRVRKIYELFPQIPVPHNLEDDDDLHELTEALGAAK 132 (264)
Q Consensus 53 AieLL~~GA~~ll~~~Q~~sa~DL~~llvevl~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~l~~~~~~~~~~~~~~~~~ 132 (264)
..+.++.-+..+++.|++..|.+...-.++. -|-+......+..++.....-
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~lg~~~~~~g~~----------------------- 71 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVL-----DHYDSRFFLGLGACRQAMGQY----------------------- 71 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCH-----------------------
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHc-----CcccHHHHHHHHHHHHHHhhH-----------------------
Confidence 3444555555666666666655554433321 122344445555555543211
Q ss_pred hhhhhhhHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHhcCCCcChHhhhhhhhc
Q 024660 133 LRVEGCSSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDMARVSFHFVR 188 (264)
Q Consensus 133 ~~~~~~~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~ 188 (264)
++-....++|+.-. -.+|..|..+|.+|...| ++.+|..+|-.
T Consensus 72 ---~~A~~~~~~al~l~-------p~~~~~~~~lg~~~~~~g---~~~~A~~~~~~ 114 (148)
T 2vgx_A 72 ---DLAIHSYSYGAVMD-------IXEPRFPFHAAECLLQXG---ELAEAESGLFL 114 (148)
T ss_dssp ---HHHHHHHHHHHHHS-------TTCTHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHhcC-------CCCchHHHHHHHHHHHcC---CHHHHHHHHHH
Confidence 11144555555432 257889999999999999 99999988853
No 85
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=79.97 E-value=11 Score=28.15 Aligned_cols=68 Identities=13% Similarity=0.035 Sum_probs=51.2
Q ss_pred CCHHHHHHHHHHHHhcCCCcChHhhhhhhhcCCChHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhcCChhHHHHHHHH
Q 024660 158 GSPELHVMLAEYLYSESPELDMARVSFHFVRGNNPEKFASTIVNFMGKCYPGEDDLAVARAILMYLSLGNMKDANYIMDE 237 (264)
Q Consensus 158 Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~~~d~~~~a~~L~ew~~~~~~~e~dlfiaRaVL~~L~l~n~~~A~~~~~~ 237 (264)
.++..+..+|.+|...+ ++.+|..+|-.+ ..-.|...+.+...+. .|..+|+...|...++.
T Consensus 50 ~~~~~~~~lg~~~~~~g---~~~~A~~~~~~a--------------l~~~p~~~~~~~~lg~-~~~~~g~~~~A~~~~~~ 111 (142)
T 2xcb_A 50 YDARYFLGLGACRQSLG---LYEQALQSYSYG--------------ALMDINEPRFPFHAAE-CHLQLGDLDGAESGFYS 111 (142)
T ss_dssp TCHHHHHHHHHHHHHTT---CHHHHHHHHHHH--------------HHHCTTCTHHHHHHHH-HHHHTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHh---hHHHHHHHHHHH--------------HhcCCCCcHHHHHHHH-HHHHcCCHHHHHHHHHH
Confidence 57899999999999999 998888776431 1123555566665555 46789999999999999
Q ss_pred HHHHhh
Q 024660 238 VKKQVE 243 (264)
Q Consensus 238 f~~~~~ 243 (264)
.++..|
T Consensus 112 al~~~p 117 (142)
T 2xcb_A 112 ARALAA 117 (142)
T ss_dssp HHHHHH
T ss_pred HHHhCC
Confidence 887665
No 86
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=79.45 E-value=6.3 Score=26.81 Aligned_cols=42 Identities=10% Similarity=-0.044 Sum_probs=30.6
Q ss_pred hHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHhc-CCCcChHhhhhhhhc
Q 024660 139 SSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSE-SPELDMARVSFHFVR 188 (264)
Q Consensus 139 ~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~~~~~e-~~~~~~~~A~~Hfl~ 188 (264)
..+++++++-.. ...++..+..+|.++... + ++.+|..+|-.
T Consensus 60 ~~~~~~a~~~~~-----~~~~~~~~~~l~~~~~~~~~---~~~~A~~~~~~ 102 (112)
T 2kck_A 60 VDCYNYVINVIE-----DEYNKDVWAAKADALRYIEG---KEVEAEIAEAR 102 (112)
T ss_dssp HHHHHHHHHTSC-----CTTCHHHHHHHHHHHTTCSS---CSHHHHHHHHH
T ss_pred HHHHHHHHHhCc-----ccchHHHHHHHHHHHHHHhC---CHHHHHHHHHH
Confidence 445555554321 134789999999999999 9 99999888754
No 87
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=78.89 E-value=26 Score=28.81 Aligned_cols=36 Identities=11% Similarity=0.166 Sum_probs=25.3
Q ss_pred CCchHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhh
Q 024660 208 PGEDDLAVARAILMYLSLGNMKDANYIMDEVKKQVEN 244 (264)
Q Consensus 208 ~~e~dlfiaRaVL~~L~l~n~~~A~~~~~~f~~~~~~ 244 (264)
|.....+...+. .|...++...|...+....+..+.
T Consensus 190 ~~~~~~~~~l~~-~~~~~~~~~~A~~~~~~a~~~~~~ 225 (330)
T 3hym_B 190 PEDPFVMHEVGV-VAFQNGEWKTAEKWFLDALEKIKA 225 (330)
T ss_dssp TTCHHHHHHHHH-HHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred CCChHHHHHHHH-HHHHcccHHHHHHHHHHHHHHhhh
Confidence 444555554444 466789999999999988876654
No 88
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=78.89 E-value=38 Score=30.77 Aligned_cols=44 Identities=18% Similarity=0.271 Sum_probs=34.6
Q ss_pred HHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHh----cCCCcChHhhhhhhhcC
Q 024660 141 FLKAAIKWSIEFGAPKTGSPELHVMLAEYLYS----ESPELDMARVSFHFVRG 189 (264)
Q Consensus 141 fl~~ai~WS~~~g~~~~Gdp~LH~~la~~~~~----e~~~~~~~~A~~Hfl~~ 189 (264)
=.+.|+.|-.+.-+ .|+|+-+..+|.+|.. .+ ++.+|..+|-.+
T Consensus 346 ~~~~A~~~~~~a~~--~~~~~a~~~Lg~~y~~g~g~~~---~~~~A~~~~~~A 393 (490)
T 2xm6_A 346 EHKKAVEWFRKAAA--KGEKAAQFNLGNALLQGKGVKK---DEQQAAIWMRKA 393 (490)
T ss_dssp HHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCC---CHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCCC---CHHHHHHHHHHH
Confidence 45677777776532 4899999999999998 66 999999988763
No 89
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=78.71 E-value=11 Score=24.93 Aligned_cols=68 Identities=13% Similarity=0.108 Sum_probs=48.0
Q ss_pred CCCHHHHHHHHHHHHhcCCCcChHhhhhhhhcCCChHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhcCChhHHHHHHH
Q 024660 157 TGSPELHVMLAEYLYSESPELDMARVSFHFVRGNNPEKFASTIVNFMGKCYPGEDDLAVARAILMYLSLGNMKDANYIMD 236 (264)
Q Consensus 157 ~Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~~~d~~~~a~~L~ew~~~~~~~e~dlfiaRaVL~~L~l~n~~~A~~~~~ 236 (264)
.+++..+..+|..++..+ ++.+|..+|-..- +..|...+.+...+. .|...++...|...+.
T Consensus 6 ~~~~~~~~~la~~~~~~~---~~~~A~~~~~~a~--------------~~~~~~~~~~~~l~~-~~~~~~~~~~A~~~~~ 67 (91)
T 1na3_A 6 GNSAEAWYNLGNAYYKQG---DYDEAIEYYQKAL--------------ELDPNNAEAWYNLGN-AYYKQGDYDEAIEYYQ 67 (91)
T ss_dssp CHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHH--------------HHCTTCHHHHHHHHH-HHHHTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcc---CHHHHHHHHHHHH--------------hcCCCCHHHHHHHHH-HHHHHhhHHHHHHHHH
Confidence 456788999999999999 9999988874321 112344444444444 4567899999999888
Q ss_pred HHHHHh
Q 024660 237 EVKKQV 242 (264)
Q Consensus 237 ~f~~~~ 242 (264)
..++..
T Consensus 68 ~a~~~~ 73 (91)
T 1na3_A 68 KALELD 73 (91)
T ss_dssp HHHHHC
T ss_pred HHHhcC
Confidence 877653
No 90
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=78.62 E-value=29 Score=29.26 Aligned_cols=210 Identities=11% Similarity=0.101 Sum_probs=109.7
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHH--------------HHHhhhCHHHHHHHHHHHHHHHHHcCCcccHHHHHHHHHH
Q 024660 17 NIDKLEKIVNEGNFYGAQQMYKSISA--------------RYVAAQRYSEALDLLHAGACLQLKNNQLTCGAELAVSFVE 82 (264)
Q Consensus 17 ~l~rl~~~i~~G~~YEAhQ~~RTl~~--------------Ry~~~kk~~eAieLL~~GA~~ll~~~Q~~sa~DL~~llve 82 (264)
...+-...+..|+|=+|.+.|+.... =|...+++++|++.+...... .. .-.+....+..
T Consensus 67 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----~~--~~~~~~~~l~~ 140 (368)
T 1fch_A 67 PFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLEL----KP--DNQTALMALAV 140 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CT--TCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhc----CC--CCHHHHHHHHH
Confidence 34444555667777777776665432 345667777777776654322 11 11233344445
Q ss_pred HHhhCCCCCChhHHHHHHHHHHhCCCCCCCCCCC--------CCchHHHHHHHHhhhhhhhhhhhHHHHHHHHhhhhcCC
Q 024660 83 ALVKGKVAYDNENLDRVRKIYELFPQIPVPHNLE--------DDDDLHELTEALGAAKLRVEGCSSFLKAAIKWSIEFGA 154 (264)
Q Consensus 83 vl~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~l~--------~~~~~~~~~~~~~~~~~~~~~~~~fl~~ai~WS~~~g~ 154 (264)
+|...+- -++.+.-+.+.+...|........- .......+.... .....++-..+++++++...
T Consensus 141 ~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~A~~~~~~a~~~~p---- 212 (368)
T 1fch_A 141 SFTNESL--QRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL--SDSLFLEVKELFLAAVRLDP---- 212 (368)
T ss_dssp HHHHTTC--HHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH--HHHHHHHHHHHHHHHHHHST----
T ss_pred HHHHcCC--HHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh--hcccHHHHHHHHHHHHHhCc----
Confidence 5555432 1345555556666555432211000 000000011110 11222233455666665432
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCcChHhhhhhhhcC-----CChHHH---HHHHHH---------HHh---hcCCCchHHH
Q 024660 155 PKTGSPELHVMLAEYLYSESPELDMARVSFHFVRG-----NNPEKF---ASTIVN---------FMG---KCYPGEDDLA 214 (264)
Q Consensus 155 ~~~Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~~-----~d~~~~---a~~L~e---------w~~---~~~~~e~dlf 214 (264)
..+++..+..+|.+|...| ++.+|..+|-.. +++..+ +.++.. ++. +-.|.....+
T Consensus 213 -~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 288 (368)
T 1fch_A 213 -TSIDPDVQCGLGVLFNLSG---EYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSR 288 (368)
T ss_dssp -TSCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred -CcccHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Confidence 2348999999999999999 999999888542 223322 222211 111 1234444444
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHHhhhh
Q 024660 215 VARAILMYLSLGNMKDANYIMDEVKKQVENK 245 (264)
Q Consensus 215 iaRaVL~~L~l~n~~~A~~~~~~f~~~~~~~ 245 (264)
...+ ..|...|+...|...+...++..|..
T Consensus 289 ~~l~-~~~~~~g~~~~A~~~~~~al~~~~~~ 318 (368)
T 1fch_A 289 YNLG-ISCINLGAHREAVEHFLEALNMQRKS 318 (368)
T ss_dssp HHHH-HHHHHHTCHHHHHHHHHHHHHHHHTC
T ss_pred HHHH-HHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 4444 44677899999999999988876643
No 91
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=78.53 E-value=35 Score=30.15 Aligned_cols=174 Identities=8% Similarity=0.039 Sum_probs=87.4
Q ss_pred cCChhHHHHHHHHHHHHH---H--hhhC---HHHHHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhhCCCCCChhHHHH
Q 024660 27 EGNFYGAQQMYKSISARY---V--AAQR---YSEALDLLHAGACLQLKNNQLTCGAELAVSFVEALVKGKVAYDNENLDR 98 (264)
Q Consensus 27 ~G~~YEAhQ~~RTl~~Ry---~--~~kk---~~eAieLL~~GA~~ll~~~Q~~sa~DL~~llvevl~~~~~~~~~~~~~r 98 (264)
.|+|=+|...|+....++ . .... ...-.+.++.-+..+...|++..|.++..-.++. .. - ......
T Consensus 202 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~~--~-~~~~~~ 275 (514)
T 2gw1_A 202 PESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL---FP--R-VNSYIY 275 (514)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH---CC--C-HHHHHH
T ss_pred hccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---Cc--c-HHHHHH
Confidence 788888888887776644 2 0001 1334455555566666677776666655444432 11 1 333344
Q ss_pred HHHHHHhCCCCCCCCCCCCCchHHHHHHHHhhhhhhhhhhhHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHhcCCCcC
Q 024660 99 VRKIYELFPQIPVPHNLEDDDDLHELTEALGAAKLRVEGCSSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELD 178 (264)
Q Consensus 99 l~~l~~~~p~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~~~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~~~~~e~~~~~ 178 (264)
+..++.....-+. ....++++++.. ..++..+..+|.++...+ +
T Consensus 276 l~~~~~~~~~~~~--------------------------A~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~~---~ 319 (514)
T 2gw1_A 276 MALIMADRNDSTE--------------------------YYNYFDKALKLD-------SNNSSVYYHRGQMNFILQ---N 319 (514)
T ss_dssp HHHHHHTSSCCTT--------------------------GGGHHHHHHTTC-------TTCTHHHHHHHHHHHHTT---C
T ss_pred HHHHHHHCCCHHH--------------------------HHHHHHHHhhcC-------cCCHHHHHHHHHHHHHhC---C
Confidence 4444443321110 133334444321 134556666666666666 6
Q ss_pred hHhhhhhhhcC-----CChHHHHHHHH------------HHH---hhcCCCchHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 024660 179 MARVSFHFVRG-----NNPEKFASTIV------------NFM---GKCYPGEDDLAVARAILMYLSLGNMKDANYIMDEV 238 (264)
Q Consensus 179 ~~~A~~Hfl~~-----~d~~~~a~~L~------------ew~---~~~~~~e~dlfiaRaVL~~L~l~n~~~A~~~~~~f 238 (264)
+.+|..+|-.. +++..+..+-. +++ .+-.|...+.+...+ ..|...++...|...+...
T Consensus 320 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la-~~~~~~~~~~~A~~~~~~a 398 (514)
T 2gw1_A 320 YDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFA-EILTDKNDFDKALKQYDLA 398 (514)
T ss_dssp TTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHH-HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHH-HHHHHCCCHHHHHHHHHHH
Confidence 66665555321 11111111100 000 012344445444443 3467789999999999888
Q ss_pred HHHhh
Q 024660 239 KKQVE 243 (264)
Q Consensus 239 ~~~~~ 243 (264)
.+..+
T Consensus 399 ~~~~~ 403 (514)
T 2gw1_A 399 IELEN 403 (514)
T ss_dssp HHHHH
T ss_pred HHhhh
Confidence 77655
No 92
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=78.39 E-value=22 Score=32.82 Aligned_cols=44 Identities=20% Similarity=0.146 Sum_probs=32.7
Q ss_pred hhHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHhcCCCcChHhhhhhhhc
Q 024660 138 CSSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDMARVSFHFVR 188 (264)
Q Consensus 138 ~~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~ 188 (264)
-....++|++-... ...+|..+..+|.+|+..+ ++.+|..+|-.
T Consensus 240 A~~~~~~al~~~p~----~~~~~~~~~~lg~~~~~~g---~~~~A~~~~~~ 283 (474)
T 4abn_A 240 ALSAYAQAEKVDRK----ASSNPDLHLNRATLHKYEE---SYGEALEGFSQ 283 (474)
T ss_dssp HHHHHHHHHHHCGG----GGGCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC----cccCHHHHHHHHHHHHHcC---CHHHHHHHHHH
Confidence 35555666654221 1378999999999999999 99999988754
No 93
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=77.87 E-value=15 Score=27.15 Aligned_cols=70 Identities=9% Similarity=-0.024 Sum_probs=39.2
Q ss_pred CCHHHHHHHHHHHHhcCCCcChHhhhhhhhcCCChHHHHHHHHHHHhhcCCC---chHHHHHHHHHHHHhcCChhHHHHH
Q 024660 158 GSPELHVMLAEYLYSESPELDMARVSFHFVRGNNPEKFASTIVNFMGKCYPG---EDDLAVARAILMYLSLGNMKDANYI 234 (264)
Q Consensus 158 Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~~~d~~~~a~~L~ew~~~~~~~---e~dlfiaRaVL~~L~l~n~~~A~~~ 234 (264)
.++..+.-+|.+|++.+ +|.+|..+|-.+= +......+. -...+ .|.-..|..+++...|...
T Consensus 40 ~~~~~~~nlg~~~~~~~---~~~~A~~~~~~al----------~~~~~~~~~~~~~a~~~-~~lg~~~~~~~~~~~A~~~ 105 (127)
T 4gcn_A 40 SNITFYNNKAAVYFEEK---KFAECVQFCEKAV----------EVGRETRADYKLIAKAM-SRAGNAFQKQNDLSLAVQW 105 (127)
T ss_dssp TCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH----------HHHHHTTCCHHHHHHHH-HHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHhHHHHHHHhh---hHHHHHHHHHHHH----------HhCcccchhhHHHHHHH-HHHHHHHHHcCCHHHHHHH
Confidence 46777777777777777 7777776654321 000000000 01112 2222346778899999888
Q ss_pred HHHHHHH
Q 024660 235 MDEVKKQ 241 (264)
Q Consensus 235 ~~~f~~~ 241 (264)
|..-++.
T Consensus 106 ~~kal~~ 112 (127)
T 4gcn_A 106 FHRSLSE 112 (127)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 7776654
No 94
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=77.68 E-value=26 Score=28.19 Aligned_cols=145 Identities=14% Similarity=0.048 Sum_probs=78.7
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhhCCCCCChh-H
Q 024660 17 NIDKLEKIVNEGNFYGAQQMYKSISARYVAAQRYSEALDLLHAGACLQLKNNQLTCGAELAVSFVEALVKGKVAYDNE-N 95 (264)
Q Consensus 17 ~l~rl~~~i~~G~~YEAhQ~~RTl~~Ry~~~kk~~eAieLL~~GA~~ll~~~Q~~sa~DL~~llvevl~~~~~~~~~~-~ 95 (264)
.++-++...+.|+. +|+-.+ ..-|...+++++|++.+...+ +.|...+-..|+.++ ...+++.+.+ .
T Consensus 5 A~~~~~~aa~~g~~-~a~~~l---g~~~~~~~~~~~A~~~~~~a~----~~g~~~a~~~lg~~y----~~~g~~~~~~~A 72 (212)
T 3rjv_A 5 PGSQYQQQAEAGDR-RAQYYL---ADTWVSSGDYQKAEYWAQKAA----AQGDGDALALLAQLK----IRNPQQADYPQA 72 (212)
T ss_dssp TTHHHHHHHHTTCH-HHHHHH---HHHHHHHTCHHHHHHHHHHHH----HTTCHHHHHHHHHHT----TSSTTSCCHHHH
T ss_pred HHHHHHHHHHCCCH-HHHHHH---HHHHhcCCCHHHHHHHHHHHH----HcCCHHHHHHHHHHH----HcCCCCCCHHHH
Confidence 34556677777753 444333 333444899999999999876 456665555565554 3446665532 3
Q ss_pred HHHHHHHHHhCCCCCCCCCCCCCchHHHHHHHHhhhhhhhhhhhHHHHHHHHhhhhcCCCCCCC----HHHHHHHHHHHH
Q 024660 96 LDRVRKIYELFPQIPVPHNLEDDDDLHELTEALGAAKLRVEGCSSFLKAAIKWSIEFGAPKTGS----PELHVMLAEYLY 171 (264)
Q Consensus 96 ~~rl~~l~~~~p~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~~~~fl~~ai~WS~~~g~~~~Gd----p~LH~~la~~~~ 171 (264)
+.-+.+... +..+ +-...+-.. ...+. ++..=..+|+.|-.+.- ..|+ |.-+..+|.+|.
T Consensus 73 ~~~~~~A~~---~g~~-------~a~~~Lg~~-y~~g~---g~~~d~~~A~~~~~~A~--~~~~~~~~~~a~~~Lg~~y~ 136 (212)
T 3rjv_A 73 RQLAEKAVE---AGSK-------SGEIVLARV-LVNRQ---AGATDVAHAITLLQDAA--RDSESDAAVDAQMLLGLIYA 136 (212)
T ss_dssp HHHHHHHHH---TTCH-------HHHHHHHHH-HTCGG---GSSCCHHHHHHHHHHHT--SSTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH---CCCH-------HHHHHHHHH-HHcCC---CCccCHHHHHHHHHHHH--HcCCCcchHHHHHHHHHHHH
Confidence 332332222 1110 000011000 00000 00112356777877654 3577 899999999999
Q ss_pred hcCC-CcChHhhhhhhhcC
Q 024660 172 SESP-ELDMARVSFHFVRG 189 (264)
Q Consensus 172 ~e~~-~~~~~~A~~Hfl~~ 189 (264)
...+ ..++.+|..+|-.+
T Consensus 137 ~g~g~~~d~~~A~~~~~~A 155 (212)
T 3rjv_A 137 SGVHGPEDDVKASEYFKGS 155 (212)
T ss_dssp HTSSSSCCHHHHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHH
Confidence 8221 22888998888764
No 95
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=77.59 E-value=25 Score=27.97 Aligned_cols=92 Identities=9% Similarity=0.124 Sum_probs=54.8
Q ss_pred hHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHhcCCCcChHhhhhhhhcC----CChH------HHHHHHHH-------
Q 024660 139 SSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDMARVSFHFVRG----NNPE------KFASTIVN------- 201 (264)
Q Consensus 139 ~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~~----~d~~------~~a~~L~e------- 201 (264)
..+++++++.. ..++..+..+|.+|...+ ++.+|..+|-.. .+|. .++.++..
T Consensus 91 ~~~~~~a~~~~-------~~~~~~~~~la~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 160 (252)
T 2ho1_A 91 DEEYRKALASD-------SRNARVLNNYGGFLYEQK---RYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQA 160 (252)
T ss_dssp HHHHHHHHHHC-------TTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHC-------cCcHHHHHHHHHHHHHHh---HHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHH
Confidence 45556665542 246889999999999999 999999888643 2232 12222111
Q ss_pred --HHh---hcCCCchHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 024660 202 --FMG---KCYPGEDDLAVARAILMYLSLGNMKDANYIMDEVKKQ 241 (264)
Q Consensus 202 --w~~---~~~~~e~dlfiaRaVL~~L~l~n~~~A~~~~~~f~~~ 241 (264)
++. +-.|.....+.. ....|...++.+.|...+....+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~-la~~~~~~g~~~~A~~~~~~~~~~ 204 (252)
T 2ho1_A 161 KEYFEKSLRLNRNQPSVALE-MADLLYKEREYVPARQYYDLFAQG 204 (252)
T ss_dssp HHHHHHHHHHCSCCHHHHHH-HHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCcccHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHh
Confidence 000 112333443333 334466788999999888876653
No 96
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=77.51 E-value=39 Score=30.18 Aligned_cols=37 Identities=19% Similarity=0.170 Sum_probs=25.5
Q ss_pred CCCchHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhh
Q 024660 207 YPGEDDLAVARAILMYLSLGNMKDANYIMDEVKKQVEN 244 (264)
Q Consensus 207 ~~~e~dlfiaRaVL~~L~l~n~~~A~~~~~~f~~~~~~ 244 (264)
.|...+.+...+ ..|...++...|...++...+..|.
T Consensus 374 ~~~~~~~~~~l~-~~~~~~g~~~~A~~~~~~a~~~~~~ 410 (537)
T 3fp2_A 374 FPTLPEVPTFFA-EILTDRGDFDTAIKQYDIAKRLEEV 410 (537)
T ss_dssp CTTCTHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHH-HHHHHhCCHHHHHHHHHHHHHcCCc
Confidence 345555555444 3456789999999999988876654
No 97
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=77.46 E-value=12 Score=26.88 Aligned_cols=83 Identities=14% Similarity=0.250 Sum_probs=57.9
Q ss_pred hHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHhcCCCcChHhhhhhhhcCCChHHHHHHHHHHHhhcCCCchHHHHHHH
Q 024660 139 SSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDMARVSFHFVRGNNPEKFASTIVNFMGKCYPGEDDLAVARA 218 (264)
Q Consensus 139 ~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~~~d~~~~a~~L~ew~~~~~~~e~dlfiaRa 218 (264)
..+.++|++-... .-.++..+..+|.+|+..+ ++.+|..+|-.. + +-.|...+.+...+
T Consensus 10 ~~~~~~al~~~~~----~p~~~~~~~~lg~~~~~~~---~~~~A~~~~~~a---------l-----~~~p~~~~~~~~l~ 68 (117)
T 3k9i_A 10 VPYYEKAIASGLQ----GKDLAECYLGLGSTFRTLG---EYRKAEAVLANG---------V-----KQFPNHQALRVFYA 68 (117)
T ss_dssp HHHHHHHHSSCCC----HHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHH---------H-----HHCTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCC----CccHHHHHHHHHHHHHHcC---CHHHHHHHHHHH---------H-----HhCCCchHHHHHHH
Confidence 5666777764210 1145788999999999999 999999887421 1 12355566655555
Q ss_pred HHHHHhcCChhHHHHHHHHHHHHhh
Q 024660 219 ILMYLSLGNMKDANYIMDEVKKQVE 243 (264)
Q Consensus 219 VL~~L~l~n~~~A~~~~~~f~~~~~ 243 (264)
. .|...|+...|...+...++..|
T Consensus 69 ~-~~~~~g~~~~A~~~~~~al~~~p 92 (117)
T 3k9i_A 69 M-VLYNLGRYEQGVELLLKIIAETS 92 (117)
T ss_dssp H-HHHHHTCHHHHHHHHHHHHHHHC
T ss_pred H-HHHHcCCHHHHHHHHHHHHHhCC
Confidence 4 46779999999999988887654
No 98
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=77.10 E-value=14 Score=26.11 Aligned_cols=68 Identities=9% Similarity=-0.062 Sum_probs=45.0
Q ss_pred CCHHHHHHHHHHHHhcCCCcChHhhhhhhhcCCChHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhcCChhHHHHHHHH
Q 024660 158 GSPELHVMLAEYLYSESPELDMARVSFHFVRGNNPEKFASTIVNFMGKCYPGEDDLAVARAILMYLSLGNMKDANYIMDE 237 (264)
Q Consensus 158 Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~~~d~~~~a~~L~ew~~~~~~~e~dlfiaRaVL~~L~l~n~~~A~~~~~~ 237 (264)
.++..+..+|.+|+..+ ++.+|..+|-..- +-.|...+.+...+. .|...++...|...+..
T Consensus 17 ~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al--------------~~~p~~~~~~~~la~-~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 17 DNMLLRFTLGKTYAEHE---QFDAALPHLRAAL--------------DFDPTYSVAWKWLGK-TLQGQGDRAGARQAWES 78 (115)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH--------------HHCTTCHHHHHHHHH-HHHHHTCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcc---CHHHHHHHHHHHH--------------HHCCCcHHHHHHHHH-HHHHcCCHHHHHHHHHH
Confidence 67899999999999999 9999988764321 112333344433333 34556777777777777
Q ss_pred HHHHhh
Q 024660 238 VKKQVE 243 (264)
Q Consensus 238 f~~~~~ 243 (264)
.++..+
T Consensus 79 al~~~~ 84 (115)
T 2kat_A 79 GLAAAQ 84 (115)
T ss_dssp HHHHHH
T ss_pred HHHhcc
Confidence 665544
No 99
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=76.93 E-value=23 Score=27.21 Aligned_cols=79 Identities=14% Similarity=0.141 Sum_probs=52.0
Q ss_pred hHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHhcCCCcChHhhhhhhhcCCChHHHHHHHHHHHhhcCC-CchHHHHHH
Q 024660 139 SSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDMARVSFHFVRGNNPEKFASTIVNFMGKCYP-GEDDLAVAR 217 (264)
Q Consensus 139 ~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~~~d~~~~a~~L~ew~~~~~~-~e~dlfiaR 217 (264)
..+++++++.. ..++..+..+|.+++..+ ++.+|..+|-.. .... | ...+. ...
T Consensus 133 ~~~~~~~~~~~-------~~~~~~~~~la~~~~~~~---~~~~A~~~~~~~-------------~~~~-~~~~~~~-~~~ 187 (225)
T 2vq2_A 133 EAYLKRSLAAQ-------PQFPPAFKELARTKMLAG---QLGDADYYFKKY-------------QSRV-EVLQADD-LLL 187 (225)
T ss_dssp HHHHHHHHHHS-------TTCHHHHHHHHHHHHHHT---CHHHHHHHHHHH-------------HHHH-CSCCHHH-HHH
T ss_pred HHHHHHHHHhC-------CCCchHHHHHHHHHHHcC---CHHHHHHHHHHH-------------HHhC-CCCCHHH-HHH
Confidence 45555665542 246889999999999999 999888776421 1112 2 22333 345
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHHh
Q 024660 218 AILMYLSLGNMKDANYIMDEVKKQV 242 (264)
Q Consensus 218 aVL~~L~l~n~~~A~~~~~~f~~~~ 242 (264)
....+...++...|..++....+..
T Consensus 188 ~~~~~~~~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 188 GWKIAKALGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 5556677889999988887776543
No 100
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=76.79 E-value=15 Score=25.70 Aligned_cols=40 Identities=10% Similarity=-0.080 Sum_probs=31.2
Q ss_pred hHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHhcCCCcChHhhhhhhhc
Q 024660 139 SSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDMARVSFHFVR 188 (264)
Q Consensus 139 ~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~ 188 (264)
..+++++++.. ..++..+..+|.++.+.+ ++.+|..+|-.
T Consensus 70 ~~~~~~a~~~~-------~~~~~~~~~la~~~~~~~---~~~~A~~~~~~ 109 (133)
T 2lni_A 70 LKDCEECIQLE-------PTFIKGYTRKAAALEAMK---DYTKAMDVYQK 109 (133)
T ss_dssp HHHHHHHHHHC-------TTCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHHHHHhC-------CCchHHHHHHHHHHHHHh---hHHHHHHHHHH
Confidence 55666666542 247889999999999999 99999988864
No 101
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=76.76 E-value=28 Score=28.04 Aligned_cols=62 Identities=15% Similarity=0.143 Sum_probs=39.8
Q ss_pred HHHHHHHHHhcCCCcChHhhhhhhhcCCChHHHHHHHHHHHhhcCCCch--HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 024660 163 HVMLAEYLYSESPELDMARVSFHFVRGNNPEKFASTIVNFMGKCYPGED--DLAVARAILMYLSLGNMKDANYIMDEVKK 240 (264)
Q Consensus 163 H~~la~~~~~e~~~~~~~~A~~Hfl~~~d~~~~a~~L~ew~~~~~~~e~--dlfiaRaVL~~L~l~n~~~A~~~~~~f~~ 240 (264)
+..+|..|++.+ ++.+|...|- .++ +-+|... .-...+....|.-+|+...|...++....
T Consensus 150 ~~~~a~~~~~~~---~~~~A~~~~~---------~~l-----~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~ 212 (225)
T 2yhc_A 150 EYSVAEYYTERG---AWVAVVNRVE---------GML-----RDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA 212 (225)
T ss_dssp HHHHHHHHHHHT---CHHHHHHHHH---------HHH-----HHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC---cHHHHHHHHH---------HHH-----HHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Confidence 456788888888 7777766552 111 2223322 23455666778889999999988876555
Q ss_pred H
Q 024660 241 Q 241 (264)
Q Consensus 241 ~ 241 (264)
.
T Consensus 213 ~ 213 (225)
T 2yhc_A 213 N 213 (225)
T ss_dssp C
T ss_pred h
Confidence 3
No 102
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=76.55 E-value=22 Score=26.88 Aligned_cols=39 Identities=8% Similarity=-0.071 Sum_probs=30.3
Q ss_pred hHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHhcCCCcChHhhhhhhh
Q 024660 139 SSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDMARVSFHFV 187 (264)
Q Consensus 139 ~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl 187 (264)
....++||+-. -.++..|..+|.+|...+ ++.+|..+|-
T Consensus 65 ~~~~~~al~~~-------p~~~~~~~~lg~~~~~~g---~~~~A~~~~~ 103 (164)
T 3sz7_A 65 AEDAELATVVD-------PKYSKAWSRLGLARFDMA---DYKGAKEAYE 103 (164)
T ss_dssp HHHHHHHHHHC-------TTCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHHHHhC-------CCCHHHHHHHHHHHHHcc---CHHHHHHHHH
Confidence 55556666543 246899999999999999 9999988774
No 103
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=75.83 E-value=29 Score=27.85 Aligned_cols=67 Identities=16% Similarity=0.170 Sum_probs=48.3
Q ss_pred CCHHHHHHHHHHHHhcCCCcChHhhhhhhhcCCChHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhcCChhHHHHHHHH
Q 024660 158 GSPELHVMLAEYLYSESPELDMARVSFHFVRGNNPEKFASTIVNFMGKCYPGEDDLAVARAILMYLSLGNMKDANYIMDE 237 (264)
Q Consensus 158 Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~~~d~~~~a~~L~ew~~~~~~~e~dlfiaRaVL~~L~l~n~~~A~~~~~~ 237 (264)
.++..+..+|.+|...| ++.+|..+|-.. ++. . ...+.+...+.+ |...|+...|...++.
T Consensus 116 ~~~~~~~~lg~~~~~~g---~~~~A~~~~~~a----------l~~---~--~~~~~~~~la~~-~~~~g~~~~A~~~~~~ 176 (217)
T 2pl2_A 116 RYAPLHLQRGLVYALLG---ERDKAEASLKQA----------LAL---E--DTPEIRSALAEL-YLSMGRLDEALAQYAK 176 (217)
T ss_dssp TCHHHHHHHHHHHHHTT---CHHHHHHHHHHH----------HHH---C--CCHHHHHHHHHH-HHHHTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcC---ChHHHHHHHHHH----------Hhc---c--cchHHHHHHHHH-HHHcCCHHHHHHHHHH
Confidence 68999999999999999 999988777421 111 1 233444444443 6788999999999888
Q ss_pred HHHHhh
Q 024660 238 VKKQVE 243 (264)
Q Consensus 238 f~~~~~ 243 (264)
.++..|
T Consensus 177 al~~~P 182 (217)
T 2pl2_A 177 ALEQAP 182 (217)
T ss_dssp HHHHST
T ss_pred HHHhCC
Confidence 877544
No 104
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=75.46 E-value=18 Score=27.61 Aligned_cols=68 Identities=10% Similarity=0.044 Sum_probs=49.7
Q ss_pred CCHHHHHHHHHHHHhcCCCcChHhhhhhhhcCCChHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhcCChhHHHHHHHH
Q 024660 158 GSPELHVMLAEYLYSESPELDMARVSFHFVRGNNPEKFASTIVNFMGKCYPGEDDLAVARAILMYLSLGNMKDANYIMDE 237 (264)
Q Consensus 158 Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~~~d~~~~a~~L~ew~~~~~~~e~dlfiaRaVL~~L~l~n~~~A~~~~~~ 237 (264)
.+|..+..+|.+|...| ++.+|..+|-..- .-.|...+.+...++ .|+.+|+...|...|+.
T Consensus 53 ~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al--------------~l~p~~~~~~~~lg~-~~~~~g~~~~A~~~~~~ 114 (148)
T 2vgx_A 53 YDSRFFLGLGACRQAMG---QYDLAIHSYSYGA--------------VMDIXEPRFPFHAAE-CLLQXGELAEAESGLFL 114 (148)
T ss_dssp TCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH--------------HHSTTCTHHHHHHHH-HHHHTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHh---hHHHHHHHHHHHH--------------hcCCCCchHHHHHHH-HHHHcCCHHHHHHHHHH
Confidence 57888999999999999 8888887764311 123455555555554 46789999999999998
Q ss_pred HHHHhh
Q 024660 238 VKKQVE 243 (264)
Q Consensus 238 f~~~~~ 243 (264)
.++..|
T Consensus 115 al~~~p 120 (148)
T 2vgx_A 115 AQELIA 120 (148)
T ss_dssp HHHHHT
T ss_pred HHHHCc
Confidence 887654
No 105
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=75.14 E-value=15 Score=28.74 Aligned_cols=27 Identities=11% Similarity=0.055 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHhhhCHHHHHHHHHHHH
Q 024660 35 QMYKSISARYVAAQRYSEALDLLHAGA 61 (264)
Q Consensus 35 Q~~RTl~~Ry~~~kk~~eAieLL~~GA 61 (264)
+.++.+...+..+++|++|++.+.+..
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al 65 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEAL 65 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345555566666666666666555443
No 106
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=75.08 E-value=25 Score=26.66 Aligned_cols=47 Identities=11% Similarity=0.023 Sum_probs=33.2
Q ss_pred chHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhhhCHHHHHHHHHHHH
Q 024660 13 PAQENIDKLEKIVNEGNFYGAQQMYKSISARYVAAQRYSEALDLLHAGA 61 (264)
Q Consensus 13 ~~~r~l~rl~~~i~~G~~YEAhQ~~RTl~~Ry~~~kk~~eAieLL~~GA 61 (264)
.++|.++.++..+.... +-...+-.+..=|...|+|++|++.+....
T Consensus 12 ~~e~ai~~~~~a~~~~p--~~~~~~~~la~~y~~~~~~~~A~~~~~~al 58 (150)
T 4ga2_A 12 DVERYIASVQGSTPSPR--QKSIKGFYFAKLYYEAKEYDLAKKYICTYI 58 (150)
T ss_dssp HHHHHHHHHHHHSCSHH--HHHTTHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhcccCc--ccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 68888888888877632 222333456666888999999999877544
No 107
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=75.05 E-value=30 Score=31.01 Aligned_cols=29 Identities=14% Similarity=0.166 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHhhhCHHHHHHHHHHHHH
Q 024660 34 QQMYKSISARYVAAQRYSEALDLLHAGAC 62 (264)
Q Consensus 34 hQ~~RTl~~Ry~~~kk~~eAieLL~~GA~ 62 (264)
-+.++.+.+.|.++++|++|++.+.....
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~ 251 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLR 251 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 34466666667777777777766554443
No 108
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=74.27 E-value=26 Score=28.13 Aligned_cols=97 Identities=8% Similarity=0.060 Sum_probs=61.7
Q ss_pred hHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHhcCCCcChHhhhhhhhcC-----CChH---HHHHHHHH---------
Q 024660 139 SSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDMARVSFHFVRG-----NNPE---KFASTIVN--------- 201 (264)
Q Consensus 139 ~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~~-----~d~~---~~a~~L~e--------- 201 (264)
....++++. .. ..+.-.+..+..+|.+|...+ ++.+|..+|-.+ +++. .+|.+...
T Consensus 57 ~~~~~~a~~-~~---~~~~~~~~~~~~lg~~~~~~~---~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 129 (272)
T 3u4t_A 57 QKDIETYFS-KV---NATKAKSADFEYYGKILMKKG---QDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQ 129 (272)
T ss_dssp HHHHHHHHT-TS---CTTTCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHh-cc---CchhHHHHHHHHHHHHHHHcc---cHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHH
Confidence 556666666 21 123345666999999999999 999999998653 2232 23333222
Q ss_pred HHhh---cCCCchHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhh
Q 024660 202 FMGK---CYPGEDDLAVARAILMYLSLGNMKDANYIMDEVKKQVE 243 (264)
Q Consensus 202 w~~~---~~~~e~dlfiaRaVL~~L~l~n~~~A~~~~~~f~~~~~ 243 (264)
++.+ -.|.....+..++...|... +...|...+...++..|
T Consensus 130 ~~~~al~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~p 173 (272)
T 3u4t_A 130 YMEKQIRPTTTDPKVFYELGQAYYYNK-EYVKADSSFVKVLELKP 173 (272)
T ss_dssp HHGGGCCSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHST
T ss_pred HHHHHhhcCCCcHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCc
Confidence 1111 24566777777774555543 99999999888877554
No 109
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=73.89 E-value=6.1 Score=28.70 Aligned_cols=46 Identities=11% Similarity=0.097 Sum_probs=35.7
Q ss_pred hHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHhcCCCcChHhhhhhhh
Q 024660 139 SSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDMARVSFHFV 187 (264)
Q Consensus 139 ~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl 187 (264)
..++..|++............++++..+|.+|++.| ++..|..|+-
T Consensus 25 ~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g---~~~~A~~~~~ 70 (104)
T 2v5f_A 25 ELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQG---DLDKALLLTK 70 (104)
T ss_dssp HHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHcc---CHHHHHHHHH
Confidence 667777777665432223568899999999999999 9999988875
No 110
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=73.53 E-value=19 Score=27.22 Aligned_cols=80 Identities=8% Similarity=-0.005 Sum_probs=52.4
Q ss_pred hHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHhcCCCcChHhhhhhhhcCCChHHHHHHHHHHHhhcCCCchHHHHHHH
Q 024660 139 SSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDMARVSFHFVRGNNPEKFASTIVNFMGKCYPGEDDLAVARA 218 (264)
Q Consensus 139 ~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~~~d~~~~a~~L~ew~~~~~~~e~dlfiaRa 218 (264)
..+.++||+.. -.++..+..+|.+|+..+ ++.+|..+|-..- +-.|.....+..++
T Consensus 31 ~~~~~~al~~~-------p~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al--------------~~~p~~~~~~~~lg 86 (164)
T 3sz7_A 31 IDLYTQALSIA-------PANPIYLSNRAAAYSASG---QHEKAAEDAELAT--------------VVDPKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHS-------TTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH--------------HHCTTCHHHHHHHH
T ss_pred HHHHHHHHHhC-------CcCHHHHHHHHHHHHHcc---CHHHHHHHHHHHH--------------HhCCCCHHHHHHHH
Confidence 45556666543 247899999999999999 9999888764321 11234444455444
Q ss_pred HHHHHhcCChhHHHHHHHHHHHHhh
Q 024660 219 ILMYLSLGNMKDANYIMDEVKKQVE 243 (264)
Q Consensus 219 VL~~L~l~n~~~A~~~~~~f~~~~~ 243 (264)
.+ |..+++...|...+...++..|
T Consensus 87 ~~-~~~~g~~~~A~~~~~~al~~~p 110 (164)
T 3sz7_A 87 LA-RFDMADYKGAKEAYEKGIEAEG 110 (164)
T ss_dssp HH-HHHTTCHHHHHHHHHHHHHHHS
T ss_pred HH-HHHccCHHHHHHHHHHHHHhCC
Confidence 43 4567788888777777766543
No 111
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=72.89 E-value=50 Score=29.14 Aligned_cols=27 Identities=4% Similarity=-0.167 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHhhhCHHHHHHHHHHHH
Q 024660 35 QMYKSISARYVAAQRYSEALDLLHAGA 61 (264)
Q Consensus 35 Q~~RTl~~Ry~~~kk~~eAieLL~~GA 61 (264)
..+..+..-|...+++++|++++....
T Consensus 238 ~~~~~~~~~~~~~~~~~~A~~~~~~~l 264 (514)
T 2gw1_A 238 ISLEHTGIFKFLKNDPLGAHEDIKKAI 264 (514)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344555666777888999888877543
No 112
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=72.85 E-value=16 Score=28.60 Aligned_cols=68 Identities=9% Similarity=-0.055 Sum_probs=49.2
Q ss_pred CCHHHHHHHHHHHHhcCCCcChHhhhhhhhcCCChHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhcCChhHHHHHHHH
Q 024660 158 GSPELHVMLAEYLYSESPELDMARVSFHFVRGNNPEKFASTIVNFMGKCYPGEDDLAVARAILMYLSLGNMKDANYIMDE 237 (264)
Q Consensus 158 Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~~~d~~~~a~~L~ew~~~~~~~e~dlfiaRaVL~~L~l~n~~~A~~~~~~ 237 (264)
.+|..|..+|.+|...| +|.+|..+|-.. -+-.|...+.+.-.++ .|+.+|+...|...|+.
T Consensus 68 ~~~~~~~~lg~~~~~~g---~~~~Ai~~~~~a--------------l~l~P~~~~~~~~lg~-~~~~lg~~~eA~~~~~~ 129 (151)
T 3gyz_A 68 YNVDYIMGLAAIYQIKE---QFQQAADLYAVA--------------FALGKNDYTPVFHTGQ-CQLRLKAPLKAKECFEL 129 (151)
T ss_dssp TCHHHHHHHHHHHHHTT---CHHHHHHHHHHH--------------HHHSSSCCHHHHHHHH-HHHHTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHc---cHHHHHHHHHHH--------------HhhCCCCcHHHHHHHH-HHHHcCCHHHHHHHHHH
Confidence 57888888888888888 888887766322 1123555666666665 56789999999999998
Q ss_pred HHHHhh
Q 024660 238 VKKQVE 243 (264)
Q Consensus 238 f~~~~~ 243 (264)
.++..+
T Consensus 130 al~l~~ 135 (151)
T 3gyz_A 130 VIQHSN 135 (151)
T ss_dssp HHHHCC
T ss_pred HHHhCC
Confidence 887543
No 113
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=72.71 E-value=17 Score=27.71 Aligned_cols=94 Identities=16% Similarity=0.152 Sum_probs=56.8
Q ss_pred hHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHhcCCCcChHhhhhhhhcC-----CChH---HHHHHHHH---------
Q 024660 139 SSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDMARVSFHFVRG-----NNPE---KFASTIVN--------- 201 (264)
Q Consensus 139 ~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~~-----~d~~---~~a~~L~e--------- 201 (264)
..+++++++=. -.++..+..+|.+|...+ ++.+|..+|-.+ +++. .++.+++.
T Consensus 30 ~~~~~~al~~~-------p~~~~~~~~lg~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 30 LQALQDKIRAN-------PQNSEQWALLGEYYLWQN---DYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp CHHHHHHHHHC-------CSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred HHHHHHHHHhC-------CCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 55666666521 257899999999999999 999998887542 2333 22322110
Q ss_pred ---HHh---hcCCCchHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhh
Q 024660 202 ---FMG---KCYPGEDDLAVARAILMYLSLGNMKDANYIMDEVKKQVE 243 (264)
Q Consensus 202 ---w~~---~~~~~e~dlfiaRaVL~~L~l~n~~~A~~~~~~f~~~~~ 243 (264)
++. +-.|.....+...+. .|...++...|...+....+..|
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~p 146 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLAS-DAFMQANYAQAIELWQKVMDLNS 146 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHH-HHHHTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHH-HHHHcccHHHHHHHHHHHHhhCC
Confidence 000 123444444444443 35667888888888877776443
No 114
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=71.20 E-value=41 Score=27.43 Aligned_cols=29 Identities=7% Similarity=0.120 Sum_probs=20.9
Q ss_pred CCCHHHHHHHHHHHHh----cCCCcChHhhhhhhhc
Q 024660 157 TGSPELHVMLAEYLYS----ESPELDMARVSFHFVR 188 (264)
Q Consensus 157 ~Gdp~LH~~la~~~~~----e~~~~~~~~A~~Hfl~ 188 (264)
.|++..+..+|.+|.. .+ ++.+|..+|-.
T Consensus 143 ~~~~~a~~~lg~~~~~~~~~~~---~~~~A~~~~~~ 175 (273)
T 1ouv_A 143 LNDGDGCTILGSLYDAGRGTPK---DLKKALASYDK 175 (273)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCC---CHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHcCCCCCC---CHHHHHHHHHH
Confidence 3577777888888877 66 77777777654
No 115
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=70.88 E-value=35 Score=26.61 Aligned_cols=100 Identities=6% Similarity=-0.081 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhhCCCCCCh-----------hHHHHHHHHHHhCCCCCCCCCCCCCchH
Q 024660 53 ALDLLHAGACLQLKNNQLTCGAELAVSFVEALVKGKVAYDN-----------ENLDRVRKIYELFPQIPVPHNLEDDDDL 121 (264)
Q Consensus 53 AieLL~~GA~~ll~~~Q~~sa~DL~~llvevl~~~~~~~~~-----------~~~~rl~~l~~~~p~~~~~r~l~~~~~~ 121 (264)
..+.+..-+..+++.|++..|.++..-.++........... .....+..++....
T Consensus 37 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~-------------- 102 (198)
T 2fbn_A 37 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNK-------------- 102 (198)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTT--------------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhc--------------
Confidence 34455556668888899988888766665544332211111 22233333333221
Q ss_pred HHHHHHHhhhhhhhhhhhHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHhcCCCcChHhhhhhhhc
Q 024660 122 HELTEALGAAKLRVEGCSSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDMARVSFHFVR 188 (264)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~ 188 (264)
..++...+.++|++-. -.++..+..+|.+|...+ ++.+|..+|-.
T Consensus 103 ------------~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~~---~~~~A~~~~~~ 147 (198)
T 2fbn_A 103 ------------DYPKAIDHASKVLKID-------KNNVKALYKLGVANMYFG---FLEEAKENLYK 147 (198)
T ss_dssp ------------CHHHHHHHHHHHHHHS-------TTCHHHHHHHHHHHHHHT---CHHHHHHHHHH
T ss_pred ------------CHHHHHHHHHHHHHhC-------cccHHHHHHHHHHHHHcc---cHHHHHHHHHH
Confidence 0122255666666642 257889999999999999 99999888754
No 116
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=70.52 E-value=32 Score=26.02 Aligned_cols=27 Identities=11% Similarity=0.111 Sum_probs=23.6
Q ss_pred CCHHHHHHHHHHHHhcCCCcChHhhhhhhh
Q 024660 158 GSPELHVMLAEYLYSESPELDMARVSFHFV 187 (264)
Q Consensus 158 Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl 187 (264)
.++..+..+|.+|...+ ++.+|..+|-
T Consensus 113 ~~~~~~~~la~~~~~~g---~~~~A~~~~~ 139 (177)
T 2e2e_A 113 NEITALMLLASDAFMQA---NYAQAIELWQ 139 (177)
T ss_dssp TCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcc---cHHHHHHHHH
Confidence 56889999999999999 9999888764
No 117
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=70.45 E-value=56 Score=30.33 Aligned_cols=39 Identities=10% Similarity=0.054 Sum_probs=27.8
Q ss_pred hHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHhc---CCCcChHhhhhhhh
Q 024660 139 SSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSE---SPELDMARVSFHFV 187 (264)
Q Consensus 139 ~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~~~~~e---~~~~~~~~A~~Hfl 187 (264)
...+++|++-. -.++..+..+|.++... + ++.+|..+|-
T Consensus 111 ~~~~~~al~~~-------p~~~~~~~~l~~~~~~~~~~g---~~~~A~~~~~ 152 (568)
T 2vsy_A 111 AAAYTRAHQLL-------PEEPYITAQLLNWRRRLCDWR---ALDVLSAQVR 152 (568)
T ss_dssp HHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCCT---THHHHHHHHH
T ss_pred HHHHHHHHHhC-------CCCHHHHHHHHHHHHHhhccc---cHHHHHHHHH
Confidence 44555555432 25788999999999999 7 8887776654
No 118
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=70.17 E-value=45 Score=27.52 Aligned_cols=27 Identities=11% Similarity=0.053 Sum_probs=18.6
Q ss_pred CCHHHHHHHHHHHHhcCCCcChHhhhhhhh
Q 024660 158 GSPELHVMLAEYLYSESPELDMARVSFHFV 187 (264)
Q Consensus 158 Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl 187 (264)
.++..+..+|.++...+ ++.+|..+|-
T Consensus 186 ~~~~~~~~la~~~~~~~---~~~~A~~~~~ 212 (359)
T 3ieg_A 186 DNTEAFYKISTLYYQLG---DHELSLSEVR 212 (359)
T ss_dssp CCHHHHHHHHHHHHHHT---CHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcC---CHHHHHHHHH
Confidence 46677777777777777 7766666553
No 119
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=70.07 E-value=15 Score=27.75 Aligned_cols=40 Identities=5% Similarity=-0.089 Sum_probs=31.5
Q ss_pred hHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHhcCCCcChHhhhhhhhc
Q 024660 139 SSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDMARVSFHFVR 188 (264)
Q Consensus 139 ~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~ 188 (264)
....++||... -.++..|..+|.+|...| ++.+|..+|-.
T Consensus 83 ~~~~~~al~~~-------p~~~~a~~~~g~~~~~~g---~~~~A~~~~~~ 122 (162)
T 3rkv_A 83 EETSSEVLKRE-------ETNEKALFRRAKARIAAW---KLDEAEEDLKL 122 (162)
T ss_dssp HHHHHHHHHHS-------TTCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHHHHhcC-------CcchHHHHHHHHHHHHHh---cHHHHHHHHHH
Confidence 55556666652 257889999999999999 99999988854
No 120
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=70.04 E-value=30 Score=25.48 Aligned_cols=68 Identities=9% Similarity=-0.053 Sum_probs=43.6
Q ss_pred CCHHHHHHHHHHHHhcCCCcChHhhhhhhhcCCChHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhcCChhHHHHHHHH
Q 024660 158 GSPELHVMLAEYLYSESPELDMARVSFHFVRGNNPEKFASTIVNFMGKCYPGEDDLAVARAILMYLSLGNMKDANYIMDE 237 (264)
Q Consensus 158 Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~~~d~~~~a~~L~ew~~~~~~~e~dlfiaRaVL~~L~l~n~~~A~~~~~~ 237 (264)
.++..|..+|.+|++.| ++.+|..+|-.+ + +-.|...+.+..+|.. |..+++...|...|+.
T Consensus 45 ~~~~~~~~~~~~~~~~~---~~~~A~~~~~~a----------l----~~~p~~~~a~~~lg~~-~~~~~~~~~A~~~~~~ 106 (126)
T 4gco_A 45 ENAILYSNRAACLTKLM---EFQRALDDCDTC----------I----RLDSKFIKGYIRKAAC-LVAMREWSKAQRAYED 106 (126)
T ss_dssp TCHHHHHHHHHHHHHTT---CHHHHHHHHHHH----------H----HHCTTCHHHHHHHHHH-HHHTTCHHHHHHHHHH
T ss_pred CCHHHHHHHhhHHHhhc---cHHHHHHHHHHH----------H----HhhhhhhHHHHHHHHH-HHHCCCHHHHHHHHHH
Confidence 45666666666666666 666665544211 0 1235556666666664 5789999999999988
Q ss_pred HHHHhh
Q 024660 238 VKKQVE 243 (264)
Q Consensus 238 f~~~~~ 243 (264)
.++.-|
T Consensus 107 al~l~P 112 (126)
T 4gco_A 107 ALQVDP 112 (126)
T ss_dssp HHHHCT
T ss_pred HHHHCc
Confidence 887543
No 121
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=68.32 E-value=99 Score=30.74 Aligned_cols=27 Identities=11% Similarity=0.121 Sum_probs=21.0
Q ss_pred CCHHHHHHHHHHHHhcCCCcChHhhhhhhh
Q 024660 158 GSPELHVMLAEYLYSESPELDMARVSFHFV 187 (264)
Q Consensus 158 Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl 187 (264)
.+++.|..+|.+|.+.| ++.+|..+|-
T Consensus 109 ~~~~a~~~Lg~~~~~~g---~~~eAi~~~~ 135 (723)
T 4gyw_A 109 AFADAHSNLASIHKDSG---NIPEAIASYR 135 (723)
T ss_dssp TCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcC---CHHHHHHHHH
Confidence 56778888888888888 8888877764
No 122
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=67.67 E-value=39 Score=31.46 Aligned_cols=40 Identities=15% Similarity=0.228 Sum_probs=30.7
Q ss_pred hHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHhcCCCcChHhhhhhhhc
Q 024660 139 SSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDMARVSFHFVR 188 (264)
Q Consensus 139 ~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~ 188 (264)
....++|++-. -.++..+..+|.+|.+.+ ++.+|..+|-.
T Consensus 77 ~~~~~~al~~~-------p~~~~~~~~la~~~~~~g---~~~~A~~~~~~ 116 (568)
T 2vsy_A 77 AVLLQQASDAA-------PEHPGIALWLGHALEDAG---QAEAAAAAYTR 116 (568)
T ss_dssp HHHHHHHHHHC-------TTCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHHHHhcC-------CCCHHHHHHHHHHHHHcC---CHHHHHHHHHH
Confidence 45566666532 257899999999999999 99999887754
No 123
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=67.54 E-value=21 Score=23.96 Aligned_cols=68 Identities=13% Similarity=0.078 Sum_probs=47.3
Q ss_pred CCHHHHHHHHHHHHhcCCCcChHhhhhhhhcCCChHHHHHHHHHHHhhcCCC--chHHHHHHHHHHHHhc-CChhHHHHH
Q 024660 158 GSPELHVMLAEYLYSESPELDMARVSFHFVRGNNPEKFASTIVNFMGKCYPG--EDDLAVARAILMYLSL-GNMKDANYI 234 (264)
Q Consensus 158 Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~~~d~~~~a~~L~ew~~~~~~~--e~dlfiaRaVL~~L~l-~n~~~A~~~ 234 (264)
.++..+..+|.++...+ ++.+|..+|-.+- +..|. ..+.+...+. .|..+ ++.+.|...
T Consensus 38 ~~~~~~~~~a~~~~~~~---~~~~A~~~~~~a~--------------~~~~~~~~~~~~~~l~~-~~~~~~~~~~~A~~~ 99 (112)
T 2kck_A 38 EESKYWLMKGKALYNLE---RYEEAVDCYNYVI--------------NVIEDEYNKDVWAAKAD-ALRYIEGKEVEAEIA 99 (112)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH--------------HTSCCTTCHHHHHHHHH-HHTTCSSCSHHHHHH
T ss_pred CCHHHHHHHHHHHHHcc---CHHHHHHHHHHHH--------------HhCcccchHHHHHHHHH-HHHHHhCCHHHHHHH
Confidence 56888999999999999 9988877663211 11234 4555544444 35678 999999998
Q ss_pred HHHHHHHhh
Q 024660 235 MDEVKKQVE 243 (264)
Q Consensus 235 ~~~f~~~~~ 243 (264)
+...++..|
T Consensus 100 ~~~~~~~~p 108 (112)
T 2kck_A 100 EARAKLEHH 108 (112)
T ss_dssp HHHHGGGCC
T ss_pred HHHHhhccc
Confidence 888776544
No 124
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=66.56 E-value=28 Score=23.84 Aligned_cols=78 Identities=13% Similarity=0.112 Sum_probs=50.6
Q ss_pred hHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHhcCCCcChHhhhhhhhcCCChHHHHHHHHHHHhhcCCCchHHHHHHH
Q 024660 139 SSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDMARVSFHFVRGNNPEKFASTIVNFMGKCYPGEDDLAVARA 218 (264)
Q Consensus 139 ~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~~~d~~~~a~~L~ew~~~~~~~e~dlfiaRa 218 (264)
..+++++++.. .+++..+..+|.++...+ ++.+|..+|-.+- . -.|.....+...
T Consensus 55 ~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~-------------~-~~~~~~~~~~~l- 109 (136)
T 2fo7_A 55 IEYYQKALELD-------PRSAEAWYNLGNAYYKQG---DYDEAIEYYQKAL-------------E-LDPRSAEAWYNL- 109 (136)
T ss_dssp HHHHHHHHHHC-------TTCHHHHHHHHHHHHTTT---CHHHHHHHHHHHH-------------H-HCTTCHHHHHHH-
T ss_pred HHHHHHHHHHC-------CCchHHHHHHHHHHHHhc---CHHHHHHHHHHHH-------------H-hCCCChHHHHHH-
Confidence 45555555432 246888999999999999 9999887764321 1 122333333333
Q ss_pred HHHHHhcCChhHHHHHHHHHHHH
Q 024660 219 ILMYLSLGNMKDANYIMDEVKKQ 241 (264)
Q Consensus 219 VL~~L~l~n~~~A~~~~~~f~~~ 241 (264)
...|...++...|...+....+.
T Consensus 110 a~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 110 GNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHccHHHHHHHHHHHHcc
Confidence 33456789999999888887654
No 125
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=65.15 E-value=30 Score=23.56 Aligned_cols=27 Identities=15% Similarity=0.169 Sum_probs=23.2
Q ss_pred CCHHHHHHHHHHHHhcCCCcChHhhhhhhh
Q 024660 158 GSPELHVMLAEYLYSESPELDMARVSFHFV 187 (264)
Q Consensus 158 Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl 187 (264)
.++..+..+|.++...+ ++.+|..+|-
T Consensus 75 ~~~~~~~~la~~~~~~~---~~~~A~~~~~ 101 (125)
T 1na0_A 75 NNAEAWYNLGNAYYKQG---DYDEAIEYYQ 101 (125)
T ss_dssp TCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhc---CHHHHHHHHH
Confidence 56888999999999999 9998888764
No 126
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=64.82 E-value=34 Score=24.07 Aligned_cols=25 Identities=12% Similarity=0.019 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHhcCCCcChHhhhhhhh
Q 024660 160 PELHVMLAEYLYSESPELDMARVSFHFV 187 (264)
Q Consensus 160 p~LH~~la~~~~~e~~~~~~~~A~~Hfl 187 (264)
|+.+..+|.++.+.| ++.+|..+|-
T Consensus 76 ~~~~~~la~~~~~~g---~~~~A~~~~~ 100 (129)
T 2xev_A 76 AGGLLKLGLSQYGEG---KNTEAQQTLQ 100 (129)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC---CHHHHHHHHH
Confidence 778999999999999 9999888774
No 127
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=64.61 E-value=34 Score=24.05 Aligned_cols=65 Identities=17% Similarity=0.171 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHhcCCCcChHhhhhhhhcCCChHHHHHHHHHHHhhcCCCc---hHHHHHHHHHHHHhcCChhHHHHHHHH
Q 024660 161 ELHVMLAEYLYSESPELDMARVSFHFVRGNNPEKFASTIVNFMGKCYPGE---DDLAVARAILMYLSLGNMKDANYIMDE 237 (264)
Q Consensus 161 ~LH~~la~~~~~e~~~~~~~~A~~Hfl~~~d~~~~a~~L~ew~~~~~~~e---~dlfiaRaVL~~L~l~n~~~A~~~~~~ 237 (264)
..+..+|.++++.| ++.+|..+|-..- . -+|.. .+.+...+ ..|...|+...|...++.
T Consensus 40 ~~~~~lg~~~~~~~---~~~~A~~~~~~~~-------------~-~~p~~~~~~~~~~~la-~~~~~~g~~~~A~~~~~~ 101 (129)
T 2xev_A 40 NALYWLGESYYATR---NFQLAEAQFRDLV-------------S-RYPTHDKAAGGLLKLG-LSQYGEGKNTEAQQTLQQ 101 (129)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHH-------------H-HCTTSTTHHHHHHHHH-HHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc---cHHHHHHHHHHHH-------------H-HCCCCcccHHHHHHHH-HHHHHcCCHHHHHHHHHH
Confidence 78999999999999 9999887764211 1 11222 33333333 345678999999999999
Q ss_pred HHHHhh
Q 024660 238 VKKQVE 243 (264)
Q Consensus 238 f~~~~~ 243 (264)
.++..|
T Consensus 102 ~~~~~p 107 (129)
T 2xev_A 102 VATQYP 107 (129)
T ss_dssp HHHHST
T ss_pred HHHHCC
Confidence 887654
No 128
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=64.25 E-value=30 Score=23.32 Aligned_cols=28 Identities=7% Similarity=-0.190 Sum_probs=24.3
Q ss_pred CCHHHHHHHHHHHHhcCCCcChHhhhhhhhc
Q 024660 158 GSPELHVMLAEYLYSESPELDMARVSFHFVR 188 (264)
Q Consensus 158 Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~ 188 (264)
.++..+..+|.++...+ ++.+|..+|-.
T Consensus 70 ~~~~~~~~~a~~~~~~~---~~~~A~~~~~~ 97 (118)
T 1elw_A 70 DWGKGYSRKAAALEFLN---RFEEAKRTYEE 97 (118)
T ss_dssp TCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHh---hHHHHHHHHHH
Confidence 47889999999999999 99999888753
No 129
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=64.18 E-value=33 Score=27.29 Aligned_cols=26 Identities=15% Similarity=0.169 Sum_probs=22.2
Q ss_pred CHHHHHHHHHHHHhcCCCcChHhhhhhhh
Q 024660 159 SPELHVMLAEYLYSESPELDMARVSFHFV 187 (264)
Q Consensus 159 dp~LH~~la~~~~~e~~~~~~~~A~~Hfl 187 (264)
.|.++..+|.+|.+.| ++.+|..+|-
T Consensus 53 ~~~~~~~lg~~~~~~g---~~~~A~~~~~ 78 (208)
T 3urz_A 53 SSKLATELALAYKKNR---NYDKAYLFYK 78 (208)
T ss_dssp HHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCC---CHHHHHHHHH
Confidence 4677888999999999 9999988874
No 130
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=63.31 E-value=32 Score=23.36 Aligned_cols=67 Identities=12% Similarity=0.109 Sum_probs=39.0
Q ss_pred CCHHHHHHHHHHHHhcCCCcChHhhhhhhhcCCChHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhcCChhHHHHHHHH
Q 024660 158 GSPELHVMLAEYLYSESPELDMARVSFHFVRGNNPEKFASTIVNFMGKCYPGEDDLAVARAILMYLSLGNMKDANYIMDE 237 (264)
Q Consensus 158 Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~~~d~~~~a~~L~ew~~~~~~~e~dlfiaRaVL~~L~l~n~~~A~~~~~~ 237 (264)
.++..+..+|.++...+ ++.+|..+|-..- +..|.....+...+. .|...++...|...+..
T Consensus 41 ~~~~~~~~la~~~~~~~---~~~~A~~~~~~~~--------------~~~~~~~~~~~~la~-~~~~~~~~~~A~~~~~~ 102 (125)
T 1na0_A 41 NNAEAWYNLGNAYYKQG---DYDEAIEYYQKAL--------------ELDPNNAEAWYNLGN-AYYKQGDYDEAIEYYQK 102 (125)
T ss_dssp TCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH--------------HHCTTCHHHHHHHHH-HHHHTTCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhC---CHHHHHHHHHHHH--------------HhCCccHHHHHHHHH-HHHHhcCHHHHHHHHHH
Confidence 45566666666666666 6666655442210 112344444444443 35678899999998888
Q ss_pred HHHHh
Q 024660 238 VKKQV 242 (264)
Q Consensus 238 f~~~~ 242 (264)
..+..
T Consensus 103 ~~~~~ 107 (125)
T 1na0_A 103 ALELD 107 (125)
T ss_dssp HHHHC
T ss_pred HHHhC
Confidence 77653
No 131
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=63.14 E-value=41 Score=24.49 Aligned_cols=70 Identities=7% Similarity=-0.115 Sum_probs=44.8
Q ss_pred CCHHHHHHHHHHHHhcCCCcChHhhhhhhhcCCChHHHHHHHHHHHhhcCCCchHHH-HHHHHHHHHhcCChhHHHHHHH
Q 024660 158 GSPELHVMLAEYLYSESPELDMARVSFHFVRGNNPEKFASTIVNFMGKCYPGEDDLA-VARAILMYLSLGNMKDANYIMD 236 (264)
Q Consensus 158 Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~~~d~~~~a~~L~ew~~~~~~~e~dlf-iaRaVL~~L~l~n~~~A~~~~~ 236 (264)
.++..+..+|.++...+ ++.+|..+|-.+- . -.|...+.+ .......++..++...|...+.
T Consensus 79 ~~~~~~~~~a~~~~~~~---~~~~A~~~~~~a~-------------~-~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 141 (166)
T 1a17_A 79 KYIKGYYRRAASNMALG---KFRAALRDYETVV-------------K-VKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 141 (166)
T ss_dssp TCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-------------H-HSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhc---cHHHHHHHHHHHH-------------H-hCCCCHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 56889999999999999 9999987764321 1 112222222 1222333556788888888887
Q ss_pred HHHHHhhh
Q 024660 237 EVKKQVEN 244 (264)
Q Consensus 237 ~f~~~~~~ 244 (264)
......++
T Consensus 142 ~~~~~~~~ 149 (166)
T 1a17_A 142 HKRSVVDS 149 (166)
T ss_dssp HHHHHHHH
T ss_pred chHHHhcc
Confidence 76655543
No 132
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=62.19 E-value=62 Score=29.05 Aligned_cols=96 Identities=15% Similarity=0.177 Sum_probs=64.8
Q ss_pred HHHHHHhhhhc-CCCC-CCCHHHHHHHHHHHHhcCCCcChHhhhhhhh--cCCCh-------HHHHHHHHHHHh--hc--
Q 024660 142 LKAAIKWSIEF-GAPK-TGSPELHVMLAEYLYSESPELDMARVSFHFV--RGNNP-------EKFASTIVNFMG--KC-- 206 (264)
Q Consensus 142 l~~ai~WS~~~-g~~~-~Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl--~~~d~-------~~~a~~L~ew~~--~~-- 206 (264)
...|++|..+. +..+ .|+.++..+.++++.+.+ ++..|+..|- ...+| +.+..+.--|.. .|
T Consensus 116 ~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~---r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~ 192 (310)
T 3mv2_B 116 LDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNN---NVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKE 192 (310)
T ss_dssp HHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCc
Confidence 46778888765 3322 589999999999999999 9999999993 22233 455555545543 11
Q ss_pred ---------------CCC--chHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhh
Q 024660 207 ---------------YPG--EDDLAVARAILMYLSLGNMKDANYIMDEVKKQVEN 244 (264)
Q Consensus 207 ---------------~~~--e~dlfiaRaVL~~L~l~n~~~A~~~~~~f~~~~~~ 244 (264)
+|. ...+.+. .++.+|++..|...++.-.+..|+
T Consensus 193 ~~q~A~~~f~El~~~~p~~~~~~lLln----~~~~~g~~~eAe~~L~~l~~~~p~ 243 (310)
T 3mv2_B 193 TATSNFYYYEELSQTFPTWKTQLGLLN----LHLQQRNIAEAQGIVELLLSDYYS 243 (310)
T ss_dssp TTTHHHHHHHHHHTTSCSHHHHHHHHH----HHHHHTCHHHHHHHHHHHHSHHHH
T ss_pred cHHHHHHHHHHHHHhCCCcccHHHHHH----HHHHcCCHHHHHHHHHHHHHhccc
Confidence 122 1223333 578899999999999876665543
No 133
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=61.69 E-value=1.2e+02 Score=29.36 Aligned_cols=41 Identities=15% Similarity=0.020 Sum_probs=31.8
Q ss_pred hHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHhcCCCcChHhhhhhhhcC
Q 024660 139 SSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDMARVSFHFVRG 189 (264)
Q Consensus 139 ~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~~ 189 (264)
....++|++-. -.++..|..+|.+|.+.| ++.+|..+|-..
T Consensus 520 ~~~~~~al~~~-------P~~~~a~~~lg~~~~~~g---~~~~A~~~~~~a 560 (681)
T 2pzi_A 520 HKFYQTVWSTN-------DGVISAAFGLARARSAEG---DRVGAVRTLDEV 560 (681)
T ss_dssp TCHHHHHHHHC-------TTCHHHHHHHHHHHHHTT---CHHHHHHHHHTS
T ss_pred HHHHHHHHHhC-------CchHHHHHHHHHHHHHcC---CHHHHHHHHHhh
Confidence 44455665432 257889999999999999 999999999764
No 134
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=60.59 E-value=7.9 Score=25.68 Aligned_cols=28 Identities=14% Similarity=0.195 Sum_probs=24.7
Q ss_pred CCHHHHHHHHHHHHhcCCCcChHhhhhhhhc
Q 024660 158 GSPELHVMLAEYLYSESPELDMARVSFHFVR 188 (264)
Q Consensus 158 Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~ 188 (264)
.++..+..+|.++.+.+ ++.+|..+|-.
T Consensus 41 ~~~~~~~~l~~~~~~~~---~~~~A~~~~~~ 68 (91)
T 1na3_A 41 NNAEAWYNLGNAYYKQG---DYDEAIEYYQK 68 (91)
T ss_dssp TCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHh---hHHHHHHHHHH
Confidence 57899999999999999 99999888753
No 135
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=59.77 E-value=18 Score=32.09 Aligned_cols=28 Identities=18% Similarity=0.025 Sum_probs=17.4
Q ss_pred CCHHHHHHHHHHHHhcCCCcChHhhhhhhhc
Q 024660 158 GSPELHVMLAEYLYSESPELDMARVSFHFVR 188 (264)
Q Consensus 158 Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~ 188 (264)
.+++.+..+|.+|...| ++.+|..+|=.
T Consensus 428 ~~~~~~~~LG~~~~~~g---~~~~A~~~y~k 455 (472)
T 4g1t_A 428 ADSEALHVLAFLQELNE---KMQQADEDSER 455 (472)
T ss_dssp -CTTHHHHHHHHHHHHH---HCC--------
T ss_pred CCHHHHHHHHHHHHHcC---CHHHHHHHHHH
Confidence 56788999999999999 99999888854
No 136
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=59.69 E-value=52 Score=24.65 Aligned_cols=40 Identities=8% Similarity=0.162 Sum_probs=32.4
Q ss_pred HHHhhhhcCCCCCCCHHHHHHHHHHHHh----cCCCcChHhhhhhhhcC
Q 024660 145 AIKWSIEFGAPKTGSPELHVMLAEYLYS----ESPELDMARVSFHFVRG 189 (264)
Q Consensus 145 ai~WS~~~g~~~~Gdp~LH~~la~~~~~----e~~~~~~~~A~~Hfl~~ 189 (264)
|++|=.+.- ..|+|.-+..+|.+|.. ++ ++.+|..+|-.+
T Consensus 44 A~~~~~~Aa--~~g~~~a~~~Lg~~y~~G~g~~~---d~~~A~~~~~~A 87 (138)
T 1klx_A 44 LFQYLSKAC--ELNSGNGCRFLGDFYENGKYVKK---DLRKAAQYYSKA 87 (138)
T ss_dssp HHHHHHHHH--HTTCHHHHHHHHHHHHHCSSSCC---CHHHHHHHHHHH
T ss_pred HHHHHHHHH--cCCCHHHHHHHHHHHHcCCCCCc---cHHHHHHHHHHH
Confidence 777777653 35999999999999998 56 999999888764
No 137
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=59.13 E-value=54 Score=24.57 Aligned_cols=41 Identities=10% Similarity=0.083 Sum_probs=31.5
Q ss_pred HHHHhhhhcCCCCCCCHHHHHHHHHHHHh----cCCCcChHhhhhhhhcC
Q 024660 144 AAIKWSIEFGAPKTGSPELHVMLAEYLYS----ESPELDMARVSFHFVRG 189 (264)
Q Consensus 144 ~ai~WS~~~g~~~~Gdp~LH~~la~~~~~----e~~~~~~~~A~~Hfl~~ 189 (264)
+|+.|=.+.- ..|+|.-+..+|.+|.. .+ ++.+|..+|-.+
T Consensus 79 ~A~~~~~~Aa--~~g~~~a~~~Lg~~y~~G~g~~~---d~~~A~~~~~~A 123 (138)
T 1klx_A 79 KAAQYYSKAC--GLNDQDGCLILGYKQYAGKGVVK---NEKQAVKTFEKA 123 (138)
T ss_dssp HHHHHHHHHH--HTTCHHHHHHHHHHHHHTSSSCC---CHHHHHHHHHHH
T ss_pred HHHHHHHHHH--cCCCHHHHHHHHHHHHCCCCCCc---CHHHHHHHHHHH
Confidence 4455655442 25999999999999998 66 999999888764
No 138
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=57.97 E-value=50 Score=28.78 Aligned_cols=24 Identities=8% Similarity=-0.157 Sum_probs=14.9
Q ss_pred CCHHHHHHHHHHHHhcCCCcChHhhhh
Q 024660 158 GSPELHVMLAEYLYSESPELDMARVSF 184 (264)
Q Consensus 158 Gdp~LH~~la~~~~~e~~~~~~~~A~~ 184 (264)
.++..+..+|.++.+.+ ++.+|+.
T Consensus 262 ~~~~a~~~l~~~~~~~~---~~~~a~~ 285 (336)
T 1p5q_A 262 NNKAAKTQLAVCQQRIR---RQLAREK 285 (336)
T ss_dssp SCHHHHHHHHHHHHHHH---HHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH---HHHHHHH
Confidence 45666666777666666 6665543
No 139
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=57.84 E-value=35 Score=23.12 Aligned_cols=66 Identities=11% Similarity=0.048 Sum_probs=45.2
Q ss_pred CHHHHHHHHHHHHhcCCCcChHhhhhhhhcCCChHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 024660 159 SPELHVMLAEYLYSESPELDMARVSFHFVRGNNPEKFASTIVNFMGKCYPGEDDLAVARAILMYLSLGNMKDANYIMDEV 238 (264)
Q Consensus 159 dp~LH~~la~~~~~e~~~~~~~~A~~Hfl~~~d~~~~a~~L~ew~~~~~~~e~dlfiaRaVL~~L~l~n~~~A~~~~~~f 238 (264)
+++.+..+|..++..+ ++.+|..+|-..- +-.|.....+..++. .|+.+++...|...++..
T Consensus 3 ~~~~~~~~g~~~~~~~---~~~~A~~~~~~al--------------~~~p~~~~~~~~lg~-~~~~~g~~~~A~~~~~~a 64 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQG---LYREAVHCYDQLI--------------TAQPQNPVGYSNKAM-ALIKLGEYTQAIQMCQQG 64 (111)
T ss_dssp HHHHHHHHHHHHHTTT---CHHHHHHHHHHHH--------------HHCTTCHHHHHHHHH-HHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcC---CHHHHHHHHHHHH--------------hcCCCCHHHHHHHHH-HHHHhcCHHHHHHHHHHH
Confidence 3567888999999999 9999888763211 113444555555554 467788888888888777
Q ss_pred HHHh
Q 024660 239 KKQV 242 (264)
Q Consensus 239 ~~~~ 242 (264)
++..
T Consensus 65 l~~~ 68 (111)
T 2l6j_A 65 LRYT 68 (111)
T ss_dssp HTSC
T ss_pred HHhC
Confidence 6543
No 140
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=57.63 E-value=70 Score=25.39 Aligned_cols=50 Identities=10% Similarity=0.020 Sum_probs=34.0
Q ss_pred chHHHHHHHHHHhccCC--hhHHHHHHHHHHHHHHhhhCHHHHHHHHHHHHH
Q 024660 13 PAQENIDKLEKIVNEGN--FYGAQQMYKSISARYVAAQRYSEALDLLHAGAC 62 (264)
Q Consensus 13 ~~~r~l~rl~~~i~~G~--~YEAhQ~~RTl~~Ry~~~kk~~eAieLL~~GA~ 62 (264)
..++.++-++..++.+. --.--..+..+..-|...+++++|++.+.....
T Consensus 20 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 71 (275)
T 1xnf_A 20 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALA 71 (275)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 66777777777777531 122234556677778888999999988776543
No 141
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=57.35 E-value=76 Score=25.72 Aligned_cols=29 Identities=0% Similarity=-0.058 Sum_probs=25.0
Q ss_pred CCCHHHHHHHHHHHHh----cCCCcChHhhhhhhhc
Q 024660 157 TGSPELHVMLAEYLYS----ESPELDMARVSFHFVR 188 (264)
Q Consensus 157 ~Gdp~LH~~la~~~~~----e~~~~~~~~A~~Hfl~ 188 (264)
.|+|..+..+|.+|.. .+ ++.+|..+|-.
T Consensus 179 ~~~~~a~~~lg~~~~~g~~~~~---~~~~A~~~~~~ 211 (273)
T 1ouv_A 179 LKDSPGCFNAGNMYHHGEGATK---NFKEALARYSK 211 (273)
T ss_dssp TTCHHHHHHHHHHHHHTCSSCC---CHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCCc---cHHHHHHHHHH
Confidence 3789999999999999 78 99999888754
No 142
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=55.83 E-value=42 Score=26.47 Aligned_cols=81 Identities=10% Similarity=-0.062 Sum_probs=52.0
Q ss_pred hHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHhcCCCcChHhhhhhhhcCCChHHHHHHHHHHHhhcCCCchHHHHHHH
Q 024660 139 SSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDMARVSFHFVRGNNPEKFASTIVNFMGKCYPGEDDLAVARA 218 (264)
Q Consensus 139 ~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~~~d~~~~a~~L~ew~~~~~~~e~dlfiaRa 218 (264)
..+.+++++-.. ..++..+..+|.++...+ ++.+|..+|-..- +-.|...+.+..++
T Consensus 27 ~~~~~~al~~~~------~~~~~~~~~~~~~~~~~~---~~~~A~~~~~~al--------------~~~p~~~~~~~~l~ 83 (228)
T 4i17_A 27 FEKYSEYLKLTN------NQDSVTAYNCGVCADNIK---KYKEAADYFDIAI--------------KKNYNLANAYIGKS 83 (228)
T ss_dssp HHHHHHHHHHTT------TCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH--------------HTTCSHHHHHHHHH
T ss_pred HHHHHHHHhccC------CCCcHHHHHHHHHHHHhh---cHHHHHHHHHHHH--------------HhCcchHHHHHHHH
Confidence 445555554332 256678888999999999 9998888764321 22344445555555
Q ss_pred HHHHHhcCChhHHHHHHHHHHHHhh
Q 024660 219 ILMYLSLGNMKDANYIMDEVKKQVE 243 (264)
Q Consensus 219 VL~~L~l~n~~~A~~~~~~f~~~~~ 243 (264)
.+ |...++...|...++..++..|
T Consensus 84 ~~-~~~~~~~~~A~~~~~~al~~~p 107 (228)
T 4i17_A 84 AA-YRDMKNNQEYIATLTEGIKAVP 107 (228)
T ss_dssp HH-HHHTTCHHHHHHHHHHHHHHST
T ss_pred HH-HHHcccHHHHHHHHHHHHHHCC
Confidence 43 5667888888888777766443
No 143
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=55.54 E-value=55 Score=23.71 Aligned_cols=28 Identities=14% Similarity=0.033 Sum_probs=24.2
Q ss_pred CCHHHHHHHHHHHHhcCCCcChHhhhhhhhc
Q 024660 158 GSPELHVMLAEYLYSESPELDMARVSFHFVR 188 (264)
Q Consensus 158 Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~ 188 (264)
.+++.|..+|.+|...| ++.+|..+|-.
T Consensus 83 ~~~~~~~~la~~~~~~g---~~~~A~~~~~~ 110 (121)
T 1hxi_A 83 KDIAVHAALAVSHTNEH---NANAALASLRA 110 (121)
T ss_dssp TCHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcC---CHHHHHHHHHH
Confidence 57889999999999999 99999888753
No 144
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=54.22 E-value=1.7e+02 Score=28.93 Aligned_cols=96 Identities=17% Similarity=0.087 Sum_probs=61.4
Q ss_pred hHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHhcCCCcChHhhhhhhhcC-----CChH---HHHHHHHHH--------
Q 024660 139 SSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDMARVSFHFVRG-----NNPE---KFASTIVNF-------- 202 (264)
Q Consensus 139 ~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~~-----~d~~---~~a~~L~ew-------- 202 (264)
....++||+-. -.+++.|..+|.+|.+.+ ++.+|..+|-.+ ++++ .+|.++.+-
T Consensus 63 ~~~~~~Al~l~-------P~~~~a~~nLg~~l~~~g---~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~ 132 (723)
T 4gyw_A 63 LMHYKEAIRIS-------PTFADAYSNMGNTLKEMQ---DVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIA 132 (723)
T ss_dssp HHHHHHHHHHC-------TTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhC-------CCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 45556666532 257889999999999999 999999888532 2333 233333221
Q ss_pred -Hh---hcCCCchHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhhh
Q 024660 203 -MG---KCYPGEDDLAVARAILMYLSLGNMKDANYIMDEVKKQVENK 245 (264)
Q Consensus 203 -~~---~~~~~e~dlfiaRaVL~~L~l~n~~~A~~~~~~f~~~~~~~ 245 (264)
+. +-.|...+.+...+ ..|..+++...|...+....+..+..
T Consensus 133 ~~~~Al~l~P~~~~a~~~L~-~~l~~~g~~~~A~~~~~kal~l~~~~ 178 (723)
T 4gyw_A 133 SYRTALKLKPDFPDAYCNLA-HCLQIVCDWTDYDERMKKLVSIVADQ 178 (723)
T ss_dssp HHHHHHHHCSCCHHHHHHHH-HHHHHTTCCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCChHHHhhhh-hHHHhcccHHHHHHHHHHHHHhChhH
Confidence 11 12355555544444 34667889999999988888776643
No 145
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=54.16 E-value=53 Score=27.72 Aligned_cols=92 Identities=9% Similarity=0.164 Sum_probs=55.5
Q ss_pred hHHHHHHHHhhhhcCCCCCCCHH-HHHHHHHHHHhcCCCcChHhhhhhhhcCC--Ch---HHH-HHHHHHHH--------
Q 024660 139 SSFLKAAIKWSIEFGAPKTGSPE-LHVMLAEYLYSESPELDMARVSFHFVRGN--NP---EKF-ASTIVNFM-------- 203 (264)
Q Consensus 139 ~~fl~~ai~WS~~~g~~~~Gdp~-LH~~la~~~~~e~~~~~~~~A~~Hfl~~~--d~---~~~-a~~L~ew~-------- 203 (264)
....++|++- +-.+|. .+..+|..+.+.+ ++.+|+..|-.+- +| ..+ +..+.++.
T Consensus 119 ~~~~~~al~~-------~p~~~~~~~~~~~~~~~~~~---~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 119 HSIYNRLLAI-------EDIDPTLVYIQYMKFARRAE---GIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp HHHHHHHHTS-------SSSCTHHHHHHHHHHHHHHH---CHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred HHHHHHHHhc-------cccCccHHHHHHHHHHHHhc---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 5666677752 224665 8999999999888 8888888776521 11 111 11112111
Q ss_pred -------hhcCCCchHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 024660 204 -------GKCYPGEDDLAVARAILMYLSLGNMKDANYIMDEVKKQ 241 (264)
Q Consensus 204 -------~~~~~~e~dlfiaRaVL~~L~l~n~~~A~~~~~~f~~~ 241 (264)
-+-.|...+++...+.+ +...|+...|..+|+..++.
T Consensus 189 ~~~~~~al~~~p~~~~~~~~~~~~-~~~~g~~~~A~~~~~~al~~ 232 (308)
T 2ond_A 189 FKIFELGLKKYGDIPEYVLAYIDY-LSHLNEDNNTRVLFERVLTS 232 (308)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-HHTTCCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHH-HHHCCCHHHHHHHHHHHHhc
Confidence 11235566666555543 45678889998888887763
No 146
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=54.13 E-value=50 Score=22.63 Aligned_cols=66 Identities=12% Similarity=0.186 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHhcCCCcChHhhhhhhhcCCChHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 024660 160 PELHVMLAEYLYSESPELDMARVSFHFVRGNNPEKFASTIVNFMGKCYPGEDDLAVARAILMYLSLGNMKDANYIMDEVK 239 (264)
Q Consensus 160 p~LH~~la~~~~~e~~~~~~~~A~~Hfl~~~d~~~~a~~L~ew~~~~~~~e~dlfiaRaVL~~L~l~n~~~A~~~~~~f~ 239 (264)
++.+..+|..++..+ ++.+|..+|-.+-. -.|...+.+...+. .|...++...|...+....
T Consensus 4 ~~~~~~l~~~~~~~~---~~~~A~~~~~~a~~--------------~~~~~~~~~~~la~-~~~~~~~~~~A~~~~~~~~ 65 (131)
T 1elr_A 4 ALKEKELGNDAYKKK---DFDTALKHYDKAKE--------------LDPTNMTYITNQAA-VYFEKGDYNKCRELCEKAI 65 (131)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHH--------------HCTTCHHHHHHHHH-HHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc---CHHHHHHHHHHHHh--------------cCCccHHHHHHHHH-HHHHhccHHHHHHHHHHHH
Confidence 456788999999999 99998887743211 12333444444443 3566788888888887777
Q ss_pred HHhh
Q 024660 240 KQVE 243 (264)
Q Consensus 240 ~~~~ 243 (264)
+..+
T Consensus 66 ~~~~ 69 (131)
T 1elr_A 66 EVGR 69 (131)
T ss_dssp HHHH
T ss_pred hhcc
Confidence 6554
No 147
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=52.32 E-value=53 Score=22.40 Aligned_cols=27 Identities=7% Similarity=-0.118 Sum_probs=22.4
Q ss_pred CCHHHHHHHHHHHHhcCCCcChHhhhhhhh
Q 024660 158 GSPELHVMLAEYLYSESPELDMARVSFHFV 187 (264)
Q Consensus 158 Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl 187 (264)
.++..+..+|.++...+ ++.+|..+|-
T Consensus 78 ~~~~~~~~~~~~~~~~~---~~~~A~~~~~ 104 (131)
T 2vyi_A 78 AYSKAYGRMGLALSSLN---KHVEAVAYYK 104 (131)
T ss_dssp TCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhC---CHHHHHHHHH
Confidence 45788899999999999 8888887764
No 148
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=51.89 E-value=41 Score=24.46 Aligned_cols=68 Identities=10% Similarity=-0.093 Sum_probs=46.5
Q ss_pred CCHHHHHHHHHHHHhcCCCcChHhhhhhhhcCCChHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhcCChhHHHHHHHH
Q 024660 158 GSPELHVMLAEYLYSESPELDMARVSFHFVRGNNPEKFASTIVNFMGKCYPGEDDLAVARAILMYLSLGNMKDANYIMDE 237 (264)
Q Consensus 158 Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~~~d~~~~a~~L~ew~~~~~~~e~dlfiaRaVL~~L~l~n~~~A~~~~~~ 237 (264)
.+++.|..+|.++...| ++.+|..+|-..- +-.|...+.+...++ .|...|+...|...++.
T Consensus 49 ~~~~a~~~lg~~~~~~g---~~~~A~~~~~~al--------------~l~P~~~~~~~~la~-~~~~~g~~~~A~~~~~~ 110 (121)
T 1hxi_A 49 EREEAWRSLGLTQAENE---KDGLAIIALNHAR--------------MLDPKDIAVHAALAV-SHTNEHNANAALASLRA 110 (121)
T ss_dssp TCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH--------------HHCTTCHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcC---CHHHHHHHHHHHH--------------HhCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHH
Confidence 57899999999999999 9888887764210 123444555555554 35678888999988888
Q ss_pred HHHHhh
Q 024660 238 VKKQVE 243 (264)
Q Consensus 238 f~~~~~ 243 (264)
.++..|
T Consensus 111 al~~~P 116 (121)
T 1hxi_A 111 WLLSQP 116 (121)
T ss_dssp HHC---
T ss_pred HHHhCc
Confidence 776443
No 149
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=51.15 E-value=12 Score=25.60 Aligned_cols=40 Identities=10% Similarity=-0.089 Sum_probs=30.7
Q ss_pred hHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHhcCCCcChHhhhhhhhc
Q 024660 139 SSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDMARVSFHFVR 188 (264)
Q Consensus 139 ~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~ 188 (264)
....++|++-. -.+|..+..+|.++.+.| ++.+|..+|-.
T Consensus 24 ~~~~~~al~~~-------p~~~~~~~~lg~~~~~~g---~~~~A~~~~~~ 63 (111)
T 2l6j_A 24 VHCYDQLITAQ-------PQNPVGYSNKAMALIKLG---EYTQAIQMCQQ 63 (111)
T ss_dssp HHHHHHHHHHC-------TTCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHHHHhcC-------CCCHHHHHHHHHHHHHhc---CHHHHHHHHHH
Confidence 45555666542 257899999999999999 99999888753
No 150
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=50.75 E-value=59 Score=22.46 Aligned_cols=118 Identities=11% Similarity=0.030 Sum_probs=68.4
Q ss_pred chHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhhCCCCCC
Q 024660 13 PAQENIDKLEKIVNEGNFYGAQQMYKSISARYVAAQRYSEALDLLHAGACLQLKNNQLTCGAELAVSFVEALVKGKVAYD 92 (264)
Q Consensus 13 ~~~r~l~rl~~~i~~G~~YEAhQ~~RTl~~Ry~~~kk~~eAieLL~~GA~~ll~~~Q~~sa~DL~~llvevl~~~~~~~~ 92 (264)
........-...+..|+|=+|...|+......- +-.++++.-+..+.+.|++..|.+.....++. .|-+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~------~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-----~~~~ 83 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNP------KDAKLYSNRAACYTKLLEFQLALKDCEECIQL-----EPTF 83 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCT------TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH-----CTTC
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC------CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-----CCCc
Confidence 444555555566778888888887776654321 12445566666677777777776665555443 1223
Q ss_pred hhHHHHHHHHHHhCCCCCCCCCCCCCchHHHHHHHHhhhhhhhhhhhHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHh
Q 024660 93 NENLDRVRKIYELFPQIPVPHNLEDDDDLHELTEALGAAKLRVEGCSSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYS 172 (264)
Q Consensus 93 ~~~~~rl~~l~~~~p~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~~~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~~~~~ 172 (264)
......+..++..... .++-..+++++++... .++..+..+|.++..
T Consensus 84 ~~~~~~la~~~~~~~~--------------------------~~~A~~~~~~~~~~~p-------~~~~~~~~l~~~~~~ 130 (133)
T 2lni_A 84 IKGYTRKAAALEAMKD--------------------------YTKAMDVYQKALDLDS-------SCKEAADGYQRCMMA 130 (133)
T ss_dssp HHHHHHHHHHHHHTTC--------------------------HHHHHHHHHHHHHHCG-------GGTHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhh--------------------------HHHHHHHHHHHHHhCC-------CchHHHHHHHHHHHH
Confidence 3444555555554321 1122556666666532 356788888888876
Q ss_pred cC
Q 024660 173 ES 174 (264)
Q Consensus 173 e~ 174 (264)
.+
T Consensus 131 ~~ 132 (133)
T 2lni_A 131 QY 132 (133)
T ss_dssp HT
T ss_pred hc
Confidence 54
No 151
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=50.09 E-value=85 Score=24.09 Aligned_cols=67 Identities=12% Similarity=0.032 Sum_probs=49.7
Q ss_pred CHHHHHHHHHHHHhcCCCcChHhhhhhhhcCCChHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 024660 159 SPELHVMLAEYLYSESPELDMARVSFHFVRGNNPEKFASTIVNFMGKCYPGEDDLAVARAILMYLSLGNMKDANYIMDEV 238 (264)
Q Consensus 159 dp~LH~~la~~~~~e~~~~~~~~A~~Hfl~~~d~~~~a~~L~ew~~~~~~~e~dlfiaRaVL~~L~l~n~~~A~~~~~~f 238 (264)
++..+..+|.+|++.+ ++.+|..+|-.+- +..|.....+..++. .|...++...|...++..
T Consensus 36 ~~~~~~~lg~~~~~~g---~~~~A~~~~~~al--------------~~~~~~~~~~~~lg~-~~~~~~~~~~A~~~~~~a 97 (213)
T 1hh8_A 36 HSRICFNIGCMYTILK---NMTEAEKAFTRSI--------------NRDKHLAVAYFQRGM-LYYQTEKYDLAIKDLKEA 97 (213)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHH--------------HHCTTCHHHHHHHHH-HHHHTTCHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHcC---CHHHHHHHHHHHH--------------HhCccchHHHHHHHH-HHHHcccHHHHHHHHHHH
Confidence 7889999999999999 9999988774211 112445556666665 467799999999998888
Q ss_pred HHHhh
Q 024660 239 KKQVE 243 (264)
Q Consensus 239 ~~~~~ 243 (264)
++..+
T Consensus 98 l~~~~ 102 (213)
T 1hh8_A 98 LIQLR 102 (213)
T ss_dssp HHTTT
T ss_pred HHhCC
Confidence 77544
No 152
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=49.58 E-value=54 Score=29.30 Aligned_cols=98 Identities=5% Similarity=-0.057 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHcCCcccHHHHHHHHHHHHhhCC-----------CCCChhHHHHHHHHHHhCCCCCCCCCCCCCchHHH
Q 024660 55 DLLHAGACLQLKNNQLTCGAELAVSFVEALVKGK-----------VAYDNENLDRVRKIYELFPQIPVPHNLEDDDDLHE 123 (264)
Q Consensus 55 eLL~~GA~~ll~~~Q~~sa~DL~~llvevl~~~~-----------~~~~~~~~~rl~~l~~~~p~~~~~r~l~~~~~~~~ 123 (264)
+.+..-+..+++.|++..|.+.....++.+.... .|.+.....++..++.....
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~--------------- 288 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSD--------------- 288 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTC---------------
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccC---------------
Confidence 3455566677788888888777666666444321 01111222334443333210
Q ss_pred HHHHHhhhhhhhhhhhHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHhcCCCcChHhhhhhhhc
Q 024660 124 LTEALGAAKLRVEGCSSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDMARVSFHFVR 188 (264)
Q Consensus 124 ~~~~~~~~~~~~~~~~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~ 188 (264)
.++.....++|++- .-.++..+..+|.+|...+ ++.+|..+|-.
T Consensus 289 -----------~~~A~~~~~~al~~-------~p~~~~a~~~lg~~~~~~g---~~~eA~~~l~~ 332 (370)
T 1ihg_A 289 -----------WQGAVDSCLEALEI-------DPSNTKALYRRAQGWQGLK---EYDQALADLKK 332 (370)
T ss_dssp -----------HHHHHHHHHHHHTT-------CTTCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHHHh-------CchhHHHHHHHHHHHHHcc---CHHHHHHHHHH
Confidence 11224555555542 1257899999999999999 99999887753
No 153
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=48.91 E-value=1.2e+02 Score=25.45 Aligned_cols=83 Identities=13% Similarity=0.157 Sum_probs=57.4
Q ss_pred CCHHHHHHHHHHHHhcCCCcChHhhhhhhhcCC--ChH-HHH--HHHHHHHh---------------hcCCCchHHHHHH
Q 024660 158 GSPELHVMLAEYLYSESPELDMARVSFHFVRGN--NPE-KFA--STIVNFMG---------------KCYPGEDDLAVAR 217 (264)
Q Consensus 158 Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~~~--d~~-~~a--~~L~ew~~---------------~~~~~e~dlfiaR 217 (264)
++++.+..+|.++...| ++.+|..+|-..- +|. ... ........ .-.|...+.....
T Consensus 149 ~~~~a~~~la~~~~~~g---~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~l 225 (287)
T 3qou_A 149 QNGEIGLLLAETLIALN---RSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQL 225 (287)
T ss_dssp SCHHHHHHHHHHHHHTT---CHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cchhHHHHHHHHHHHCC---CHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHH
Confidence 67999999999999999 9999999887642 232 111 11111111 2246666666665
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHHhhh
Q 024660 218 AILMYLSLGNMKDANYIMDEVKKQVEN 244 (264)
Q Consensus 218 aVL~~L~l~n~~~A~~~~~~f~~~~~~ 244 (264)
|. .|+..|+...|...+...++..|.
T Consensus 226 a~-~l~~~g~~~~A~~~l~~~l~~~p~ 251 (287)
T 3qou_A 226 AL-QLHQVGRNEEALELLFGHLRXDLT 251 (287)
T ss_dssp HH-HHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HH-HHHHcccHHHHHHHHHHHHhcccc
Confidence 54 467899999999999998886653
No 154
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=48.08 E-value=14 Score=25.22 Aligned_cols=28 Identities=4% Similarity=0.016 Sum_probs=24.6
Q ss_pred CCHH-HHHHHHHHHHhcCCCcChHhhhhhhhc
Q 024660 158 GSPE-LHVMLAEYLYSESPELDMARVSFHFVR 188 (264)
Q Consensus 158 Gdp~-LH~~la~~~~~e~~~~~~~~A~~Hfl~ 188 (264)
.++. .+..+|.+|...+ ++.+|..+|-.
T Consensus 32 ~~~~~~~~~lg~~~~~~~---~~~~A~~~~~~ 60 (99)
T 2kc7_A 32 VGKDEAYYLMGNAYRKLG---DWQKALNNYQS 60 (99)
T ss_dssp STHHHHHHHHHHHHHHHT---CHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHcC---CHHHHHHHHHH
Confidence 5688 9999999999999 99999888754
No 155
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=47.87 E-value=31 Score=26.19 Aligned_cols=35 Identities=23% Similarity=0.240 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHc
Q 024660 32 GAQQMYKSISARYVAAQRYSEALDLLHAGACLQLKN 67 (264)
Q Consensus 32 EAhQ~~RTl~~Ry~~~kk~~eAieLL~~GA~~ll~~ 67 (264)
=||+.=| .+.|+++.++|+|||+-....|..|-+.
T Consensus 14 ~AH~~~R-rAe~ll~~gkydeAIech~kAa~yL~eA 48 (97)
T 2crb_A 14 LAHQQSR-RADRLLAAGKYEEAISCHRKATTYLSEA 48 (97)
T ss_dssp HHHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhh-HHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 3887776 5789999999999999888877666554
No 156
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=47.14 E-value=1.8e+02 Score=26.95 Aligned_cols=68 Identities=12% Similarity=0.095 Sum_probs=37.1
Q ss_pred CHHHHHHHHHHHHhcCCCcChHhhhhhhhcCCChHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 024660 159 SPELHVMLAEYLYSESPELDMARVSFHFVRGNNPEKFASTIVNFMGKCYPGEDDLAVARAILMYLSLGNMKDANYIMDEV 238 (264)
Q Consensus 159 dp~LH~~la~~~~~e~~~~~~~~A~~Hfl~~~d~~~~a~~L~ew~~~~~~~e~dlfiaRaVL~~L~l~n~~~A~~~~~~f 238 (264)
...|...+|.+|..+| ++.+|..- +.++.+|........+.=-|+..-+=.|+..+|..-|..++..-
T Consensus 136 rarl~~~La~i~e~~g---~~~eA~~i---------L~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki 203 (445)
T 4b4t_P 136 RARVTKDLVEIKKEEG---KIDEAADI---------LCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKI 203 (445)
T ss_dssp HHHHHHHHHHHHHHHT---CHHHHHHH---------HHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcc---CHHHHHHH---------HHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3456677777777777 77665422 22333332211111122125555566677788888887766553
No 157
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=46.87 E-value=1.5e+02 Score=28.07 Aligned_cols=43 Identities=9% Similarity=-0.029 Sum_probs=37.6
Q ss_pred CCCHHHHHHHHHHHHhcCCCcChHhhhhhhhcCCChHHHHHHHHHH
Q 024660 157 TGSPELHVMLAEYLYSESPELDMARVSFHFVRGNNPEKFASTIVNF 202 (264)
Q Consensus 157 ~Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~~~d~~~~a~~L~ew 202 (264)
.|+++.-..+|+..-.++ ++..|+..|+..+++++..+|+.+-
T Consensus 720 ~~~~~~~~~~~~~a~~~~---~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 720 FNNKEGLVTLAKDAETTG---KFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp TTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHcC---chHHHHHHHHHcCCHHHHHHHHHHc
Confidence 578888888999999999 9999999999999999888887663
No 158
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=46.40 E-value=1.1e+02 Score=24.32 Aligned_cols=23 Identities=9% Similarity=0.099 Sum_probs=19.2
Q ss_pred HHHhcCChhHHHHHHHHHHHHhh
Q 024660 221 MYLSLGNMKDANYIMDEVKKQVE 243 (264)
Q Consensus 221 ~~L~l~n~~~A~~~~~~f~~~~~ 243 (264)
.|...++...|...++..++..|
T Consensus 156 ~~~~~~~~~~A~~~~~~~l~~~p 178 (225)
T 2yhc_A 156 YYTERGAWVAVVNRVEGMLRDYP 178 (225)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHST
T ss_pred HHHHcCcHHHHHHHHHHHHHHCc
Confidence 36678999999999999988765
No 159
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=45.71 E-value=88 Score=23.05 Aligned_cols=25 Identities=8% Similarity=0.270 Sum_probs=20.4
Q ss_pred HHHHHhccCChhHHHHHHHHHHHHH
Q 024660 20 KLEKIVNEGNFYGAQQMYKSISARY 44 (264)
Q Consensus 20 rl~~~i~~G~~YEAhQ~~RTl~~Ry 44 (264)
.-...+++|+|||||-.+-.+-...
T Consensus 7 ~~~~lfn~g~~~eaHEvlE~~W~~~ 31 (94)
T 2cwy_A 7 EVLGLWRAGRYYEVHEVLEPYWLKA 31 (94)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhCCChHHHHHHHHHHHhhC
Confidence 3445678899999999999888766
No 160
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=45.37 E-value=1.4e+02 Score=25.09 Aligned_cols=28 Identities=14% Similarity=-0.047 Sum_probs=25.7
Q ss_pred CCHHHHHHHHHHHHhcCCCcChHhhhhhhhc
Q 024660 158 GSPELHVMLAEYLYSESPELDMARVSFHFVR 188 (264)
Q Consensus 158 Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~ 188 (264)
++++.|..+|..|...| ++.+|..+|..
T Consensus 217 ~~~~~~~~la~~l~~~g---~~~~A~~~l~~ 244 (287)
T 3qou_A 217 EDAALATQLALQLHQVG---RNEEALELLFG 244 (287)
T ss_dssp TCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcc---cHHHHHHHHHH
Confidence 78999999999999999 99999988864
No 161
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=45.26 E-value=1.1e+02 Score=23.95 Aligned_cols=25 Identities=0% Similarity=0.038 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHhcCCCcChHhhhhhhhc
Q 024660 161 ELHVMLAEYLYSESPELDMARVSFHFVR 188 (264)
Q Consensus 161 ~LH~~la~~~~~e~~~~~~~~A~~Hfl~ 188 (264)
..+..+|.++...+ ++.+|..+|-.
T Consensus 118 ~~~~~~g~~~~~~~---~~~~A~~~~~~ 142 (228)
T 4i17_A 118 IYYLKEGQKFQQAG---NIEKAEENYKH 142 (228)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHHhHHHHHhc---cHHHHHHHHHH
Confidence 56899999999999 99999999964
No 162
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=45.26 E-value=1e+02 Score=25.84 Aligned_cols=69 Identities=6% Similarity=-0.153 Sum_probs=49.2
Q ss_pred CCHHHHHHHHHHHHhcCCCcChHhhhhhhhcCCChHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhcCChhHHHHHHHH
Q 024660 158 GSPELHVMLAEYLYSESPELDMARVSFHFVRGNNPEKFASTIVNFMGKCYPGEDDLAVARAILMYLSLGNMKDANYIMDE 237 (264)
Q Consensus 158 Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~~~d~~~~a~~L~ew~~~~~~~e~dlfiaRaVL~~L~l~n~~~A~~~~~~ 237 (264)
.++.++..+|.+|.+.+ ++.+|..++-..-. -.|.....+..+|.. |..+|+...|...+..
T Consensus 36 ~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~--------------~~p~~~~~~~~lg~~-~~~~g~~~~A~~~~~~ 97 (281)
T 2c2l_A 36 LVAVYYTNRALCYLKMQ---QPEQALADCRRALE--------------LDGQSVKAHFFLGQC-QLEMESYDEAIANLQR 97 (281)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHTT--------------SCTTCHHHHHHHHHH-HHHTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhc---CHHHHHHHHHHHHH--------------hCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHH
Confidence 47899999999999999 99999887653221 123444455555543 5678888888888888
Q ss_pred HHHHhhh
Q 024660 238 VKKQVEN 244 (264)
Q Consensus 238 f~~~~~~ 244 (264)
..+..|.
T Consensus 98 al~l~p~ 104 (281)
T 2c2l_A 98 AYSLAKE 104 (281)
T ss_dssp HHHHHHH
T ss_pred HHHhCcc
Confidence 7776553
No 163
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=44.89 E-value=1.3e+02 Score=24.77 Aligned_cols=104 Identities=9% Similarity=-0.086 Sum_probs=57.8
Q ss_pred HHHHHHHHHHcCCcccHHHHHHHHHHHHhhCCCCCChhHHHHHHHHHH--hCCCCCCCCCCCCCchHHHHHHHHhhhhhh
Q 024660 57 LHAGACLQLKNNQLTCGAELAVSFVEALVKGKVAYDNENLDRVRKIYE--LFPQIPVPHNLEDDDDLHELTEALGAAKLR 134 (264)
Q Consensus 57 L~~GA~~ll~~~Q~~sa~DL~~llvevl~~~~~~~~~~~~~rl~~l~~--~~p~~~~~r~l~~~~~~~~~~~~~~~~~~~ 134 (264)
|++-...|+++|+++|+.=|+.+++.......-..+.+..-++.-.+. .|....=.|
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrr--------------------- 81 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRN--------------------- 81 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHH---------------------
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHH---------------------
Confidence 455566777888888888888887777665554445444433333332 111111000
Q ss_pred hhhhhHHHHHHHHhhhhcCC------------------CCCCCHHHHHHHHHHHHhcCCCcChHhhhhhhh
Q 024660 135 VEGCSSFLKAAIKWSIEFGA------------------PKTGSPELHVMLAEYLYSESPELDMARVSFHFV 187 (264)
Q Consensus 135 ~~~~~~fl~~ai~WS~~~g~------------------~~~Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl 187 (264)
. .++.++|++-.+.... .-+-+-++-..+|.+|.+-+ ++.+|..-+-
T Consensus 82 A---~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~---~~~~Ai~~Le 146 (167)
T 3ffl_A 82 A---VSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLK---QDKDAIAILD 146 (167)
T ss_dssp H---HHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred H---HHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHC---CHHHHHHHHh
Confidence 0 3333444333331100 11334589999999999999 8888876543
No 164
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=44.42 E-value=63 Score=26.18 Aligned_cols=19 Identities=16% Similarity=0.235 Sum_probs=11.0
Q ss_pred cCChhHHHHHHHHHHHHHH
Q 024660 27 EGNFYGAQQMYKSISARYV 45 (264)
Q Consensus 27 ~G~~YEAhQ~~RTl~~Ry~ 45 (264)
.|+|=+|.+.|+.+..++-
T Consensus 110 ~~~~~~A~~~~~~~l~~~p 128 (261)
T 3qky_A 110 QTDTRKAIEAFQLFIDRYP 128 (261)
T ss_dssp CHHHHHHHHHHHHHHHHCT
T ss_pred chhHHHHHHHHHHHHHHCc
Confidence 5566666666665555443
No 165
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=44.04 E-value=16 Score=26.13 Aligned_cols=40 Identities=18% Similarity=0.191 Sum_probs=30.9
Q ss_pred hHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHhcCCCcChHhhhhhhhc
Q 024660 139 SSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDMARVSFHFVR 188 (264)
Q Consensus 139 ~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~ 188 (264)
...+++|++-. -.+|..+..+|.++...| ++.+|..+|-.
T Consensus 47 ~~~~~~al~~~-------p~~~~~~~~l~~~~~~~g---~~~~A~~~~~~ 86 (117)
T 3k9i_A 47 EAVLANGVKQF-------PNHQALRVFYAMVLYNLG---RYEQGVELLLK 86 (117)
T ss_dssp HHHHHHHHHHC-------TTCHHHHHHHHHHHHHHT---CHHHHHHHHHH
T ss_pred HHHHHHHHHhC-------CCchHHHHHHHHHHHHcC---CHHHHHHHHHH
Confidence 55566666542 246999999999999999 99999987753
No 166
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=43.69 E-value=71 Score=22.07 Aligned_cols=52 Identities=8% Similarity=-0.022 Sum_probs=22.6
Q ss_pred hccCChhHHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHcCCcccHHHHHHHHHH
Q 024660 25 VNEGNFYGAQQMYKSISARYVAAQRYSEALDLLHAGACLQLKNNQLTCGAELAVSFVE 82 (264)
Q Consensus 25 i~~G~~YEAhQ~~RTl~~Ry~~~kk~~eAieLL~~GA~~ll~~~Q~~sa~DL~~llve 82 (264)
+..|+|=+|...|+......-. -.+..+.=+..+.+.|++..|.+...-.++
T Consensus 18 ~~~g~~~~A~~~~~~al~~~p~------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 18 LKHDNASRALALFEELVETDPD------YVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4455565665555554433211 011222233444455555555544444333
No 167
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=41.85 E-value=54 Score=30.41 Aligned_cols=116 Identities=8% Similarity=-0.028 Sum_probs=58.8
Q ss_pred hccCChhHHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhhCCCCCChhHHHHHHHHHH
Q 024660 25 VNEGNFYGAQQMYKSISARYVAAQRYSEALDLLHAGACLQLKNNQLTCGAELAVSFVEALVKGKVAYDNENLDRVRKIYE 104 (264)
Q Consensus 25 i~~G~~YEAhQ~~RTl~~Ry~~~kk~~eAieLL~~GA~~ll~~~Q~~sa~DL~~llvevl~~~~~~~~~~~~~rl~~l~~ 104 (264)
...|+|=+|.+.|+......- +..+.++.-+..+.+.|++..|.+.....++. -|-+.....++..++.
T Consensus 17 ~~~g~~~~A~~~~~~Al~~~p------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l-----~p~~~~~~~~lg~~~~ 85 (477)
T 1wao_1 17 FKAKDYENAIKFYSQAIELNP------SNAIYYGNRSLAYLRTECYGYALGDATRAIEL-----DKKYIKGYYRRAASNM 85 (477)
T ss_dssp TTTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS-----CTTCHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHhCC------ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHH
Confidence 455677777776665554321 11344555556666667776666554444332 1223344455555555
Q ss_pred hCCCCCCCCCCCCCchHHHHHHHHhhhhhhhhhhhHHHHHHHHhhhhcCCCCCCCHHHHHHHHHH--HHhcCCCcChHhh
Q 024660 105 LFPQIPVPHNLEDDDDLHELTEALGAAKLRVEGCSSFLKAAIKWSIEFGAPKTGSPELHVMLAEY--LYSESPELDMARV 182 (264)
Q Consensus 105 ~~p~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~~~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~~--~~~e~~~~~~~~A 182 (264)
....- ++-.+..++|++-. -.++..+..+|.+ +.+.+ ++.+|
T Consensus 86 ~~g~~--------------------------~eA~~~~~~al~~~-------p~~~~~~~~l~~~~~~~~~g---~~~~A 129 (477)
T 1wao_1 86 ALGKF--------------------------RAALRDYETVVKVK-------PHDKDAKMKYQECNKIVKQK---AFERA 129 (477)
T ss_dssp HHTCH--------------------------HHHHHHHHHHHHHS-------TTCTTHHHHHHHHHHHHHHH---HHCCC
T ss_pred HcCCH--------------------------HHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHHHHH---HHHHH
Confidence 43211 11145555665532 1345567777776 77777 77777
Q ss_pred hhhhh
Q 024660 183 SFHFV 187 (264)
Q Consensus 183 ~~Hfl 187 (264)
..++-
T Consensus 130 ~~~~~ 134 (477)
T 1wao_1 130 IAGDE 134 (477)
T ss_dssp -----
T ss_pred hcccc
Confidence 76655
No 168
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=41.66 E-value=1.3e+02 Score=23.71 Aligned_cols=30 Identities=17% Similarity=0.253 Sum_probs=21.1
Q ss_pred chHHHHHHHHHHhccCChhHHHHHHHHHHH
Q 024660 13 PAQENIDKLEKIVNEGNFYGAQQMYKSISA 42 (264)
Q Consensus 13 ~~~r~l~rl~~~i~~G~~YEAhQ~~RTl~~ 42 (264)
.++..+.+-...++.|+|=+|.+.|+....
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~ 32 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIA 32 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 355666777777778888888777776554
No 169
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=40.72 E-value=2e+02 Score=25.78 Aligned_cols=44 Identities=16% Similarity=0.288 Sum_probs=29.8
Q ss_pred HHHHHhhhhcCCCCCCCHHHHHHHHHHHHhcCCCcChHhhhhhhhc
Q 024660 143 KAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDMARVSFHFVR 188 (264)
Q Consensus 143 ~~ai~WS~~~g~~~~Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~ 188 (264)
..|+.|-.+.- ..|++.-+..+|.+|.+.+...++.+|..+|-.
T Consensus 313 ~~A~~~~~~a~--~~~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~ 356 (490)
T 2xm6_A 313 EQAISWYTKSA--EQGDATAQANLGAIYFRLGSEEEHKKAVEWFRK 356 (490)
T ss_dssp HHHHHHHHHHH--HTTCHHHHHHHHHHHHHSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--hcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHH
Confidence 45566655432 248888888999988875434477788877765
No 170
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=39.94 E-value=1.6e+02 Score=26.87 Aligned_cols=83 Identities=16% Similarity=0.118 Sum_probs=57.3
Q ss_pred CCHHHHHHHHHHHHhcCCCcChHhhhhhhhc--CCC---hH----HHHHHHHH---------HHh---hcCCCchHHHHH
Q 024660 158 GSPELHVMLAEYLYSESPELDMARVSFHFVR--GNN---PE----KFASTIVN---------FMG---KCYPGEDDLAVA 216 (264)
Q Consensus 158 Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~--~~d---~~----~~a~~L~e---------w~~---~~~~~e~dlfia 216 (264)
.++.+|..+|..+.+.| ++.+|+..|-. .-+ +. .++.++.. .+. +..|...++++.
T Consensus 319 ~~~~l~~~~~~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~ 395 (530)
T 2ooe_A 319 KNMLLYFAYADYEESRM---KYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVT 395 (530)
T ss_dssp SCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHH
T ss_pred ccHHHHHHHHHHHHhcC---CHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHH
Confidence 57899999999999999 89888877643 122 21 12222111 011 123556677888
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHHhh
Q 024660 217 RAILMYLSLGNMKDANYIMDEVKKQVE 243 (264)
Q Consensus 217 RaVL~~L~l~n~~~A~~~~~~f~~~~~ 243 (264)
.+.+.|.+.|+...|...|+.-++..|
T Consensus 396 ~a~~~~~~~~~~~~A~~~~e~al~~~p 422 (530)
T 2ooe_A 396 AALMEYYCSKDKSVAFKIFELGLKKYG 422 (530)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCChhHHHHHHHHHHHHCC
Confidence 888878889999999999998887665
No 171
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=39.92 E-value=1e+02 Score=22.17 Aligned_cols=27 Identities=7% Similarity=0.021 Sum_probs=17.3
Q ss_pred CCHHHHHHHHHH--HHhcCCCcChHhhhhhhh
Q 024660 158 GSPELHVMLAEY--LYSESPELDMARVSFHFV 187 (264)
Q Consensus 158 Gdp~LH~~la~~--~~~e~~~~~~~~A~~Hfl 187 (264)
.++..+..++.. +.+.+ ++.+|...+-
T Consensus 113 ~~~~~~~~~~~~~~~~~~~---~~~~A~~~~~ 141 (166)
T 1a17_A 113 HDKDAKMKYQECNKIVKQK---AFERAIAGDE 141 (166)
T ss_dssp TCHHHHHHHHHHHHHHHHH---HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHH---HHHHHHHccc
Confidence 466666444444 77777 7877776653
No 172
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=39.42 E-value=96 Score=26.97 Aligned_cols=41 Identities=7% Similarity=-0.004 Sum_probs=32.1
Q ss_pred hHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHhcCCCcChHhhhhhhhcC
Q 024660 139 SSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDMARVSFHFVRG 189 (264)
Q Consensus 139 ~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~~ 189 (264)
....++|+.-. -.++..+..+|.+|...+ ++.+|..+|-..
T Consensus 250 ~~~~~~al~~~-------p~~~~a~~~lg~a~~~~g---~~~~A~~~l~~a 290 (338)
T 2if4_A 250 IGHCNIVLTEE-------EKNPKALFRRGKAKAELG---QMDSARDDFRKA 290 (338)
T ss_dssp HHHHHHHHHHC-------TTCHHHHHHHHHHHHTTT---CHHHHHHHHHHT
T ss_pred HHHHHHHHHhC-------CCCHHHHHHHHHHHHHcC---CHHHHHHHHHHH
Confidence 55556666532 257889999999999999 999999998765
No 173
>2wm9_A Dedicator of cytokinesis protein 9; polymorphism, cell membrane, phosphoprotein, nucleotide-binding, alternative splicing; 2.20A {Homo sapiens} PDB: 2wmn_A* 2wmo_A*
Probab=39.40 E-value=1.2e+02 Score=28.37 Aligned_cols=64 Identities=19% Similarity=0.205 Sum_probs=49.6
Q ss_pred HhccCChhHHHHHHHHHH---HHHHhhh----------------------------------CHHHHHHHHHHHHHHHHH
Q 024660 24 IVNEGNFYGAQQMYKSIS---ARYVAAQ----------------------------------RYSEALDLLHAGACLQLK 66 (264)
Q Consensus 24 ~i~~G~~YEAhQ~~RTl~---~Ry~~~k----------------------------------k~~eAieLL~~GA~~ll~ 66 (264)
-.+.|+|=||=+.+..++ ++|++.. .-+..+++|.+.+..|-+
T Consensus 21 h~~~~n~~EAa~cl~~~aaliae~L~~~~~~~~~~~~f~~i~p~~~ee~~~~~d~g~~~~~fte~~l~~ll~~ai~~f~k 100 (428)
T 2wm9_A 21 HVKNGDLSEAAMCYVHVTALVAEYLTRKGVFRQGCTAFRVITPNIDEEASMMEDVGMQDVHFNEDVLMELLEQCADGLWK 100 (428)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHHHHHTTSSSCCGGGGTTTCGGGGGGC---------CCSSSHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHhhcCCCccchhccccccCCCccccCHHHHHHHHHHHHHHHHh
Confidence 478899999999987444 3654432 122345688888888888
Q ss_pred cCCcccHHHHHHHHHHHHhhC
Q 024660 67 NNQLTCGAELAVSFVEALVKG 87 (264)
Q Consensus 67 ~~Q~~sa~DL~~llvevl~~~ 87 (264)
.+-|..|.+++..++..|++.
T Consensus 101 g~~~E~ai~~~k~L~~~ye~~ 121 (428)
T 2wm9_A 101 AERYELIADIYKLIIPIYEKR 121 (428)
T ss_dssp TTCGGGHHHHHTTTHHHHHHT
T ss_pred cCcHHHHHHHHHHHHHHHHHh
Confidence 899999999999999999986
No 174
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=38.54 E-value=1.1e+02 Score=24.88 Aligned_cols=74 Identities=14% Similarity=0.077 Sum_probs=42.9
Q ss_pred hHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhhhCHHHHHHHHH---HHHHHHHHcCCcccHHHHHHHHHHHHhhC
Q 024660 14 AQENIDKLEKIVNEGNFYGAQQMYKSISARYVAAQRYSEALDLLH---AGACLQLKNNQLTCGAELAVSFVEALVKG 87 (264)
Q Consensus 14 ~~r~l~rl~~~i~~G~~YEAhQ~~RTl~~Ry~~~kk~~eAieLL~---~GA~~ll~~~Q~~sa~DL~~llvevl~~~ 87 (264)
..+.+......++.|+|||||-.+-.+-.+.-....-.+.+.=|- ..|..-++.|....|.=|+---+..|...
T Consensus 32 ~~~~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~L~~~ 108 (161)
T 2ijq_A 32 LRRAVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQYFRGV 108 (161)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTS
T ss_pred ccHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhC
Confidence 446777778889999999999998877665422100112222111 23333455566666666655555555444
No 175
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=37.67 E-value=1e+02 Score=21.58 Aligned_cols=68 Identities=6% Similarity=-0.137 Sum_probs=40.8
Q ss_pred CHHHHHHHHHHHHhcCCCcChHhhhhhhhcCCChHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 024660 159 SPELHVMLAEYLYSESPELDMARVSFHFVRGNNPEKFASTIVNFMGKCYPGEDDLAVARAILMYLSLGNMKDANYIMDEV 238 (264)
Q Consensus 159 dp~LH~~la~~~~~e~~~~~~~~A~~Hfl~~~d~~~~a~~L~ew~~~~~~~e~dlfiaRaVL~~L~l~n~~~A~~~~~~f 238 (264)
++..+..+|.++...+ ++.+|..+|-.+ .+-.|.....+...+. .|...++...|...+...
T Consensus 42 ~~~~~~~l~~~~~~~~---~~~~A~~~~~~a--------------l~~~p~~~~~~~~l~~-~~~~~~~~~~A~~~~~~a 103 (137)
T 3q49_B 42 VAVYYTNRALCYLKMQ---QPEQALADCRRA--------------LELDGQSVKAHFFLGQ-CQLEMESYDEAIANLQRA 103 (137)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHH--------------HHHCTTCHHHHHHHHH-HHHHTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhc---CHHHHHHHHHHH--------------HHhCchhHHHHHHHHH-HHHHHhhHHHHHHHHHHH
Confidence 4555555555555555 555554443211 0123455555555554 467789999999999998
Q ss_pred HHHhhh
Q 024660 239 KKQVEN 244 (264)
Q Consensus 239 ~~~~~~ 244 (264)
++..|.
T Consensus 104 ~~~~p~ 109 (137)
T 3q49_B 104 YSLAKE 109 (137)
T ss_dssp HHHHHH
T ss_pred HHHChh
Confidence 887665
No 176
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=35.78 E-value=1e+02 Score=20.86 Aligned_cols=29 Identities=10% Similarity=0.061 Sum_probs=20.5
Q ss_pred hHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHhcC
Q 024660 139 SSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSES 174 (264)
Q Consensus 139 ~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~~~~~e~ 174 (264)
..+++++++.. ..++..+..+|.++...+
T Consensus 100 ~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 100 VAYYKKALELD-------PDNETYKSNLKIAELKLR 128 (131)
T ss_dssp HHHHHHHHHHS-------TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcC-------ccchHHHHHHHHHHHHHh
Confidence 45566666542 257889999999988776
No 177
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=35.71 E-value=28 Score=24.45 Aligned_cols=40 Identities=18% Similarity=0.160 Sum_probs=29.9
Q ss_pred hHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHhcCCCcChHhhhhhhhc
Q 024660 139 SSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDMARVSFHFVR 188 (264)
Q Consensus 139 ~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~ 188 (264)
...+++|++-. -.++..+..+|.+|...| ++.+|..+|-.
T Consensus 39 ~~~~~~al~~~-------p~~~~~~~~la~~~~~~g---~~~~A~~~~~~ 78 (115)
T 2kat_A 39 LPHLRAALDFD-------PTYSVAWKWLGKTLQGQG---DRAGARQAWES 78 (115)
T ss_dssp HHHHHHHHHHC-------TTCHHHHHHHHHHHHHHT---CHHHHHHHHHH
T ss_pred HHHHHHHHHHC-------CCcHHHHHHHHHHHHHcC---CHHHHHHHHHH
Confidence 45555555421 256889999999999999 99999888753
No 178
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=34.67 E-value=2.3e+02 Score=24.66 Aligned_cols=217 Identities=12% Similarity=0.029 Sum_probs=105.8
Q ss_pred chHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHcC----CcccHHHHHHHHHHHHhhCC
Q 024660 13 PAQENIDKLEKIVNEGNFYGAQQMYKSISARYVAAQRYSEALDLLHAGACLQLKNN----QLTCGAELAVSFVEALVKGK 88 (264)
Q Consensus 13 ~~~r~l~rl~~~i~~G~~YEAhQ~~RTl~~Ry~~~kk~~eAieLL~~GA~~ll~~~----Q~~sa~DL~~llvevl~~~~ 88 (264)
.+....+++...++..+.-.--.+|-.+..=|..+|+|++|++.+.+.....-+.. ....+.=+. -+-.+|..-|
T Consensus 30 ~l~~~e~~~~~~~~~~~~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~-nla~~y~~~g 108 (472)
T 4g1t_A 30 SLDDFEDKVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWG-NYAWVYYHMG 108 (472)
T ss_dssp CHHHHHHHHHHHTTSCC---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHH-HHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHH-HHHHHHHHcC
Confidence 45666777777776544322234666677777889999999998877654433322 122221111 1123333332
Q ss_pred -CCCChhHHHHHHHHHHhCCCCCCCCCCCCCchHHHHHHHHhh---hhhhhhhhhHHHHHHHHhhhhcCCCCCCCHHHHH
Q 024660 89 -VAYDNENLDRVRKIYELFPQIPVPHNLEDDDDLHELTEALGA---AKLRVEGCSSFLKAAIKWSIEFGAPKTGSPELHV 164 (264)
Q Consensus 89 -~~~~~~~~~rl~~l~~~~p~~~~~r~l~~~~~~~~~~~~~~~---~~~~~~~~~~fl~~ai~WS~~~g~~~~Gdp~LH~ 164 (264)
..-....+++..+|...++...... . ..-..+.+..- .+...++-..+..+|+.-. -.+|+.|.
T Consensus 109 ~~~~A~~~~~ka~~i~~~~~~~~~~~-~----~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-------p~~~~~~~ 176 (472)
T 4g1t_A 109 RLSDVQIYVDKVKHVCEKFSSPYRIE-S----PELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-------PKNPEFTS 176 (472)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCSSCCC-C----HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-------TTCHHHHH
T ss_pred ChHHHHHHHHHHHHHhHhcccccchh-h----HHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-------CCCHHHHH
Confidence 2222345677778877775432111 0 00011111100 0011122233444444321 25789999
Q ss_pred HHHHHHHhcCCCcChHhhhhhhh-----cCCChHHHHHHHHHH----------------Hh---hcCCCchHHHHHHHHH
Q 024660 165 MLAEYLYSESPELDMARVSFHFV-----RGNNPEKFASTIVNF----------------MG---KCYPGEDDLAVARAIL 220 (264)
Q Consensus 165 ~la~~~~~e~~~~~~~~A~~Hfl-----~~~d~~~~a~~L~ew----------------~~---~~~~~e~dlfiaRaVL 220 (264)
.+|.+++.-+...++.+|..+|- -.+++...+.+-..+ +. .-.|...+.+...+.
T Consensus 177 ~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~- 255 (472)
T 4g1t_A 177 GLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAK- 255 (472)
T ss_dssp HHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHH-
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHH-
Confidence 99988765431113334444331 122232222221111 11 123445554444443
Q ss_pred HHHhcCChhHHHHHHHHHHHHhh
Q 024660 221 MYLSLGNMKDANYIMDEVKKQVE 243 (264)
Q Consensus 221 ~~L~l~n~~~A~~~~~~f~~~~~ 243 (264)
.|...++...|...+..-.+..|
T Consensus 256 ~~~~~~~~~~A~~~~~~al~~~p 278 (472)
T 4g1t_A 256 FYRRKDEPDKAIELLKKALEYIP 278 (472)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHcCchHHHHHHHHHHHHhCC
Confidence 56789999999998888776654
No 179
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=33.98 E-value=1.5e+02 Score=22.34 Aligned_cols=82 Identities=13% Similarity=0.112 Sum_probs=54.5
Q ss_pred CCHHHHHHHHHHHHhcCCCcChHhhhhhhhcCC----ChHH---HHHHH----------HHHHh---hcCCCchHHHHHH
Q 024660 158 GSPELHVMLAEYLYSESPELDMARVSFHFVRGN----NPEK---FASTI----------VNFMG---KCYPGEDDLAVAR 217 (264)
Q Consensus 158 Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~~~----d~~~---~a~~L----------~ew~~---~~~~~e~dlfiaR 217 (264)
+++..|..+|.++...| ++.+|..+|-..- ++.. .+.+. .+++. +-.|...+.+...
T Consensus 38 ~~~~a~~~la~~~~~~g---~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~l 114 (176)
T 2r5s_A 38 SRGDVKLAKADCLLETK---QFELAQELLATIPLEYQDNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACEL 114 (176)
T ss_dssp TSHHHHHHHHHHHHHTT---CHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHCC---CHHHHHHHHHHhhhccCChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHH
Confidence 67899999999999999 9999999886532 2221 11110 01111 1245666666666
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHHhh
Q 024660 218 AILMYLSLGNMKDANYIMDEVKKQVE 243 (264)
Q Consensus 218 aVL~~L~l~n~~~A~~~~~~f~~~~~ 243 (264)
+.+ |...|+...|...+...++..|
T Consensus 115 a~~-~~~~g~~~~A~~~~~~~l~~~p 139 (176)
T 2r5s_A 115 AVQ-YNQVGRDEEALELLWNILKVNL 139 (176)
T ss_dssp HHH-HHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHH-HHHcccHHHHHHHHHHHHHhCc
Confidence 554 6779999999999888776433
No 180
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=33.96 E-value=1.8e+02 Score=26.67 Aligned_cols=91 Identities=13% Similarity=0.032 Sum_probs=55.3
Q ss_pred HHHHHHHHHHhccCChhHHHHHHHHHHHHHHh--hhCHHHHHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhhCCCCCC
Q 024660 15 QENIDKLEKIVNEGNFYGAQQMYKSISARYVA--AQRYSEALDLLHAGACLQLKNNQLTCGAELAVSFVEALVKGKVAYD 92 (264)
Q Consensus 15 ~r~l~rl~~~i~~G~~YEAhQ~~RTl~~Ry~~--~kk~~eAieLL~~GA~~ll~~~Q~~sa~DL~~llvevl~~~~~~~~ 92 (264)
+.++..+++.-..|+|-||..+|+-....+.+ -.++..-+..+..=+..+...|++..|.++..-.++++++.-=+-.
T Consensus 288 ~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~H 367 (429)
T 3qwp_A 288 QESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSH 367 (429)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSC
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCC
Confidence 34455555555667777776666544332211 1345556666666677777788888888888888888776432322
Q ss_pred ---hhHHHHHHHHHHh
Q 024660 93 ---NENLDRVRKIYEL 105 (264)
Q Consensus 93 ---~~~~~rl~~l~~~ 105 (264)
-..+.+|..++..
T Consensus 368 p~~a~~l~nLa~~~~~ 383 (429)
T 3qwp_A 368 PVRGVQVMKVGKLQLH 383 (429)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHh
Confidence 2355666666664
No 181
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=33.11 E-value=2.4e+02 Score=24.36 Aligned_cols=79 Identities=14% Similarity=0.003 Sum_probs=48.1
Q ss_pred HHHhccCChhHHHHHHHHHHHHH------HhhhCHHHHHH-----HHHHHHHHHHHcCCcccHHHHHHHHHHHHhhCCCC
Q 024660 22 EKIVNEGNFYGAQQMYKSISARY------VAAQRYSEALD-----LLHAGACLQLKNNQLTCGAELAVSFVEALVKGKVA 90 (264)
Q Consensus 22 ~~~i~~G~~YEAhQ~~RTl~~Ry------~~~kk~~eAie-----LL~~GA~~ll~~~Q~~sa~DL~~llvevl~~~~~~ 90 (264)
......|+|-+|.+.|+...... ...+++++++. +.+.=+..+++.|++..|.+.+...++.- |
T Consensus 187 ~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-----p 261 (338)
T 2if4_A 187 NSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEE-----E 261 (338)
T ss_dssp HHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHC-----T
T ss_pred HHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----C
Confidence 34467888888888888765432 12234444443 55666777778888888877766655431 2
Q ss_pred CChhHHHHHHHHHHh
Q 024660 91 YDNENLDRVRKIYEL 105 (264)
Q Consensus 91 ~~~~~~~rl~~l~~~ 105 (264)
-+....-++..++..
T Consensus 262 ~~~~a~~~lg~a~~~ 276 (338)
T 2if4_A 262 KNPKALFRRGKAKAE 276 (338)
T ss_dssp TCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHH
Confidence 234455666666554
No 182
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=31.49 E-value=68 Score=30.62 Aligned_cols=75 Identities=11% Similarity=-0.018 Sum_probs=49.9
Q ss_pred CCCHHHHHHHHHHHHhcCCCcChHhhhhhhhcCCChHHHHHHHHHHHhhcCCC----chHHHH-----HHHHHHHHhcCC
Q 024660 157 TGSPELHVMLAEYLYSESPELDMARVSFHFVRGNNPEKFASTIVNFMGKCYPG----EDDLAV-----ARAILMYLSLGN 227 (264)
Q Consensus 157 ~Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~~~d~~~~a~~L~ew~~~~~~~----e~dlfi-----aRaVL~~L~l~n 227 (264)
..+|.+-..+|+.+.+.+ ++..|+.-|....|.+.+..+.. - .+.+. -..+.. -.|+..|+.+|+
T Consensus 678 ~~~~~~W~~la~~al~~~---~~~~A~~~y~~~~d~~~l~~l~~-~--~~~~~~~~~~~~~a~~~~~~~~A~~~~~~~g~ 751 (814)
T 3mkq_A 678 ESAEMKWRALGDASLQRF---NFKLAIEAFTNAHDLESLFLLHS-S--FNNKEGLVTLAKDAETTGKFNLAFNAYWIAGD 751 (814)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHTCHHHHHHHHH-H--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC
T ss_pred hCcHhHHHHHHHHHHHcC---CHHHHHHHHHHccChhhhHHHHH-H--cCCHHHHHHHHHHHHHcCchHHHHHHHHHcCC
Confidence 467899999999999999 99999999999999765333321 1 11000 001111 225556787888
Q ss_pred hhHHHHHHHH
Q 024660 228 MKDANYIMDE 237 (264)
Q Consensus 228 ~~~A~~~~~~ 237 (264)
++.|.+++..
T Consensus 752 ~~~a~~~~~~ 761 (814)
T 3mkq_A 752 IQGAKDLLIK 761 (814)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888877654
No 183
>4e2i_2 DNA polymerase alpha subunit B; replication initiation, hydrolase-DNA binding complex, hydro binding protein complex; HET: DNA; 5.00A {Homo sapiens}
Probab=30.77 E-value=1e+02 Score=22.31 Aligned_cols=46 Identities=9% Similarity=0.127 Sum_probs=37.7
Q ss_pred HHHHHhhCCCCCChhHHHHHHHHHHhCCCCCCCCCCCCCchHHHHHHHHhhhhhhhhhhhHHHHHHHHhhhhcC
Q 024660 80 FVEALVKGKVAYDNENLDRVRKIYELFPQIPVPHNLEDDDDLHELTEALGAAKLRVEGCSSFLKAAIKWSIEFG 153 (264)
Q Consensus 80 lvevl~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~~~~fl~~ai~WS~~~g 153 (264)
+.+=|...|+.|+++.++++++|-..+..++ ..|+..-+.+|.+.+
T Consensus 8 l~~el~~Fgi~c~d~v~eKl~ElC~~y~~~~----------------------------~e~V~ew~Afs~s~~ 53 (78)
T 4e2i_2 8 LAEELQIFGLDCEEALIEKLVELCVQYGQNE----------------------------EGMVGELIAFCTSTH 53 (78)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHTHHHHSCCCH----------------------------HHHHHHHTTHHHHTT
T ss_pred HHHHHHHcCCCCcHHHHHHHHHHHHHcCCCH----------------------------HHHHHHHHHHHHhcC
Confidence 4567889999999999999999999986532 778888888888754
No 184
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=30.63 E-value=1.4e+02 Score=27.48 Aligned_cols=78 Identities=14% Similarity=-0.040 Sum_probs=47.2
Q ss_pred hHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHhcCCCcChHhhhhhhhcCCChHHHHHHHHHHHhhcCCCchHHHHHHH
Q 024660 139 SSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDMARVSFHFVRGNNPEKFASTIVNFMGKCYPGEDDLAVARA 218 (264)
Q Consensus 139 ~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~~~d~~~~a~~L~ew~~~~~~~e~dlfiaRa 218 (264)
....++|++-. -.++..+..+|.+|.+.+ ++.+|..+|-.+- +-.|.....+..+|
T Consensus 26 ~~~~~~Al~~~-------p~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al--------------~l~p~~~~~~~~lg 81 (477)
T 1wao_1 26 IKFYSQAIELN-------PSNAIYYGNRSLAYLRTE---CYGYALGDATRAI--------------ELDKKYIKGYYRRA 81 (477)
T ss_dssp HHHHHHHHHHC-------TTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH--------------HSCTTCHHHHHHHH
T ss_pred HHHHHHHHHhC-------CccHHHHHHHHHHHHHhc---CHHHHHHHHHHHH--------------HhCCCCHHHHHHHH
Confidence 55666666542 246899999999999999 9999988774321 11233333333333
Q ss_pred HHHHHhcCChhHHHHHHHHHHHH
Q 024660 219 ILMYLSLGNMKDANYIMDEVKKQ 241 (264)
Q Consensus 219 VL~~L~l~n~~~A~~~~~~f~~~ 241 (264)
. .|..+++.+.|...++..++.
T Consensus 82 ~-~~~~~g~~~eA~~~~~~al~~ 103 (477)
T 1wao_1 82 A-SNMALGKFRAALRDYETVVKV 103 (477)
T ss_dssp H-HHHHHTCHHHHHHHHHHHHHH
T ss_pred H-HHHHcCCHHHHHHHHHHHHHh
Confidence 3 245556666666665555543
No 185
>2p9x_A Hypothetical protein PH0832; pyrococcus horikoshii OT3, NPPSFA, national project on prote structural and functional analyses; 1.65A {Pyrococcus horikoshii}
Probab=28.66 E-value=65 Score=24.33 Aligned_cols=49 Identities=14% Similarity=0.221 Sum_probs=33.4
Q ss_pred hCHHHHHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHh-hCCCCCChhHHHHHHHHHHhC
Q 024660 48 QRYSEALDLLHAGACLQLKNNQLTCGAELAVSFVEALV-KGKVAYDNENLDRVRKIYELF 106 (264)
Q Consensus 48 kk~~eAieLL~~GA~~ll~~~Q~~sa~DL~~llvevl~-~~~~~~~~~~~~rl~~l~~~~ 106 (264)
++|.+|++=|| |++ ||.=|-++++.-+. .-+.+++...++.++++++.+
T Consensus 47 ~kFkeaV~~LF---------GEy-sarllem~i~~~~~~~L~l~~~~~~lE~lve~lkk~ 96 (99)
T 2p9x_A 47 QKFKEAVSKLF---------GEY-SARLLEMVIISKLKGRLGEDIEANSLEELVSEIRKI 96 (99)
T ss_dssp HHHHHHHHHHH---------CHH-HHHHHHHHHHHHHHHHSCTTCCCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---------HHH-HHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHH
Confidence 34455555554 566 55555666665555 888999988899888888754
No 186
>3a1y_A 50S ribosomal protein P1 (L12P); stalk, helix SPIN, ribonucleoprotein; 2.13A {Pyrococcus horikoshii}
Probab=28.10 E-value=1.3e+02 Score=20.32 Aligned_cols=40 Identities=15% Similarity=0.089 Sum_probs=31.0
Q ss_pred HHHHHHcCCcccHHHHHHHHHHHHhhCCCCCChhHHHHHHHHHH
Q 024660 61 ACLQLKNNQLTCGAELAVSFVEALVKGKVAYDNENLDRVRKIYE 104 (264)
Q Consensus 61 A~~ll~~~Q~~sa~DL~~llvevl~~~~~~~~~~~~~rl~~l~~ 104 (264)
|..|...|..-++-|+- .+++..|+++++.|.+.+..-++
T Consensus 7 allL~~~g~~~t~~~I~----~il~aaGveve~~~~~~~~~~L~ 46 (58)
T 3a1y_A 7 ALLLHSVGKEINEENLK----AVLQAAGVEPEEARIKALVAALE 46 (58)
T ss_dssp HHHHHHTTCCCCHHHHH----HHHHHTTCCCCHHHHHHHHHHHS
T ss_pred HHHHHhCCCCCCHHHHH----HHHHHcCCCccHHHHHHHHHHHC
Confidence 45555667767788874 56799999999999998888665
No 187
>2fvh_A Urease gamma subunit; protein: UREA homolog, structural genomics, PSI, protein STR initiative, TB structural genomics consortium; 1.80A {Mycobacterium tuberculosis}
Probab=27.93 E-value=1.1e+02 Score=24.04 Aligned_cols=45 Identities=22% Similarity=0.160 Sum_probs=33.8
Q ss_pred HHHHHHhhh---CHHHHHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhh
Q 024660 40 ISARYVAAQ---RYSEALDLLHAGACLQLKNNQLTCGAELAVSFVEALVK 86 (264)
Q Consensus 40 l~~Ry~~~k---k~~eAieLL~~GA~~ll~~~Q~~sa~DL~~llvevl~~ 86 (264)
++.|-.++| +|.||+.|+..-.....+.|+ +-+||+.+=-++|..
T Consensus 39 LA~rR~aRGlkLN~pEAvAlIs~~ilE~aRDG~--sVAeLM~~G~~vL~r 86 (120)
T 2fvh_A 39 LARRRRARGLRLNHPEAIAVIADHILEGARDGR--TVAELMASGREVLGR 86 (120)
T ss_dssp HHHHHHHTTCCBCHHHHHHHHHHHHHHHHHHTC--CHHHHHHHTTSSSCG
T ss_pred HHHHHHHcccccCcHHHHHHHHHHHHHHhHcCC--CHHHHHHHhhhhcCH
Confidence 444555665 999999999999999999998 788887554444443
No 188
>3h3m_A Flagellar protein FLIT; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, flagellum; 2.50A {Bordetella bronchiseptica}
Probab=27.30 E-value=2.2e+02 Score=22.15 Aligned_cols=55 Identities=9% Similarity=-0.013 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHcCCcccHHHHHH---HHHHHHhh--CCCCCChhHHHHHHHHHHhC
Q 024660 52 EALDLLHAGACLQLKNNQLTCGAELAV---SFVEALVK--GKVAYDNENLDRVRKIYELF 106 (264)
Q Consensus 52 eAieLL~~GA~~ll~~~Q~~sa~DL~~---llvevl~~--~~~~~~~~~~~rl~~l~~~~ 106 (264)
++|.-+...-+.+.+.|+|+.-++|-. .+|+.+.. ...+++++...+...++..+
T Consensus 25 q~Il~lS~~ML~aA~~gdWD~Lv~lE~~y~~lVe~L~~~~~~~~l~~~~r~~k~~lL~~I 84 (126)
T 3h3m_A 25 QDIANLTSRMLAAANASNWDLVLNHGQEYVCLVERLRELEPGEPLDEAARGMKFDLLVRI 84 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCSCSCCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHH
Confidence 566666666777777788877777744 44566665 34667777777777766654
No 189
>1vh6_A Flagellar protein FLIS; structural genomics, unknown function; HET: MSE; 2.50A {Bacillus subtilis} SCOP: a.24.19.1
Probab=27.18 E-value=96 Score=24.74 Aligned_cols=79 Identities=14% Similarity=0.198 Sum_probs=46.7
Q ss_pred chHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHcCCcccHHHHHH---HHHHHHhhCCC
Q 024660 13 PAQENIDKLEKIVNEGNFYGAQQMYKSISARYVAAQRYSEALDLLHAGACLQLKNNQLTCGAELAV---SFVEALVKGKV 89 (264)
Q Consensus 13 ~~~r~l~rl~~~i~~G~~YEAhQ~~RTl~~Ry~~~kk~~eAieLL~~GA~~ll~~~Q~~sa~DL~~---llvevl~~~~~ 89 (264)
|+-+.+.+-+..|++|++=+++. ....|++|+ .+-..=|... ...+..|.. |++.-|.++++
T Consensus 32 gal~~l~~A~~aie~~d~~~k~~-------------~i~KA~~Ii-~eL~~sLd~e-geiA~nL~~LY~y~~~~L~~Ani 96 (145)
T 1vh6_A 32 GCLKFIRLAAQAIENDDMERKNE-------------NLIKAQNII-QELNFTLNRN-IELSASMGAMYDYMYRRLVQANI 96 (145)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHH-------------HHHHHHHHH-HHHHHHHHHH-HHHTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHH-------------HHHHHHHHH-HHHHHHcCCc-hHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556666666677777655543 234667777 3444444443 444555544 34466677777
Q ss_pred CCChhHHHHHHHHHHhC
Q 024660 90 AYDNENLDRVRKIYELF 106 (264)
Q Consensus 90 ~~~~~~~~rl~~l~~~~ 106 (264)
.-|.+.++.++.++..+
T Consensus 97 ~~D~~~ldev~~ll~~L 113 (145)
T 1vh6_A 97 KNDTGMLAEVEGYVTDF 113 (145)
T ss_dssp HTCHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHH
Confidence 77777777777777644
No 190
>1b79_A DNAB helicase; hexamer, DNA replication, hydrolase; 2.30A {Escherichia coli} SCOP: a.81.1.1 PDB: 1jwe_A
Probab=26.88 E-value=1.7e+02 Score=22.02 Aligned_cols=34 Identities=18% Similarity=0.213 Sum_probs=16.0
Q ss_pred HHHHHHhccCChh-HHHHHHHHHHHHHHhhhCHHH
Q 024660 19 DKLEKIVNEGNFY-GAQQMYKSISARYVAAQRYSE 52 (264)
Q Consensus 19 ~rl~~~i~~G~~Y-EAhQ~~RTl~~Ry~~~kk~~e 52 (264)
.++...|...+|| ++||.+=........+++.-+
T Consensus 39 ~~v~~~L~~edFy~~~H~~If~ai~~L~~~g~piD 73 (119)
T 1b79_A 39 DDVAERVVADDFYTRPHRHIFTEMARLQESGSPID 73 (119)
T ss_dssp HHHHTTCCGGGSSSHHHHHHHHHHHHHHHTTCCCS
T ss_pred HHHHhhCCHHHCCcHHHHHHHHHHHHHHHcCCCCC
Confidence 4444556667777 345543333333334444333
No 191
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=26.79 E-value=1.7e+02 Score=31.24 Aligned_cols=65 Identities=9% Similarity=-0.073 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHhhhCHHHHHHHHHH-------H-----------HHHHHHcCCcccHHHHHHHHHHHHhhCCCCCChh
Q 024660 33 AQQMYKSISARYVAAQRYSEALDLLHA-------G-----------ACLQLKNNQLTCGAELAVSFVEALVKGKVAYDNE 94 (264)
Q Consensus 33 AhQ~~RTl~~Ry~~~kk~~eAieLL~~-------G-----------A~~ll~~~Q~~sa~DL~~llvevl~~~~~~~~~~ 94 (264)
-||+|.|+..=|.+.|+.++|.+++.. | ..-+-+.|....|-+|...| .+.|+.+|.-
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM----~~~G~~PDvv 201 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMV----KDAGLTPDLL 201 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHH----HHTTCCCCHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHH----HHcCCCCcHH
Confidence 355899999999999999999999843 1 12356778887777775444 6788888876
Q ss_pred HHHHHHH
Q 024660 95 NLDRVRK 101 (264)
Q Consensus 95 ~~~rl~~ 101 (264)
..+-|+.
T Consensus 202 TYntLI~ 208 (1134)
T 3spa_A 202 SYAAALQ 208 (1134)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555444
No 192
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=26.37 E-value=3.6e+02 Score=24.24 Aligned_cols=191 Identities=10% Similarity=0.045 Sum_probs=94.7
Q ss_pred hHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhhCCCCCCh
Q 024660 14 AQENIDKLEKIVNEGNFYGAQQMYKSISARYVAAQRYSEALDLLHAGACLQLKNNQLTCGAELAVSFVEALVKGKVAYDN 93 (264)
Q Consensus 14 ~~r~l~rl~~~i~~G~~YEAhQ~~RTl~~Ry~~~kk~~eAieLL~~GA~~ll~~~Q~~sa~DL~~llvevl~~~~~~~~~ 93 (264)
.++-+.-++... ..+-+|+-.+=.++.+....+++++|++.+...+ +.|...+-..|+.++.. -.+++.|.
T Consensus 233 ~~~A~~~~~~aa--~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa----~~g~~~A~~~Lg~~y~~---G~g~~~d~ 303 (452)
T 3e4b_A 233 EKTAQALLEKIA--PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGR----AADQPRAELLLGKLYYE---GKWVPADA 303 (452)
T ss_dssp HHHHHHHHHHHG--GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHH----HTTCHHHHHHHHHHHHH---CSSSCCCH
T ss_pred HHHHHHHHHHHc--CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH----HCCCHHHHHHHHHHHHc---CCCCCCCH
Confidence 344444455555 2344454444444343355889999999998776 56766666666665532 22344442
Q ss_pred hHHHHHHHHHHhCCCCCCCCCCCCCchHHHHHHHHhhhhhhhhhhhHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHhc
Q 024660 94 ENLDRVRKIYELFPQIPVPHNLEDDDDLHELTEALGAAKLRVEGCSSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSE 173 (264)
Q Consensus 94 ~~~~rl~~l~~~~p~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~~~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~~~~~e 173 (264)
.+-++.+..--+..+ +-...+-. ....+. ++.+=...|+.|-...- ..|+|+-+..+|.+|...
T Consensus 304 ---~~A~~~~~~Aa~g~~-------~A~~~Lg~-~y~~G~---g~~~d~~~A~~~~~~Aa--~~g~~~A~~~Lg~~y~~G 367 (452)
T 3e4b_A 304 ---KAAEAHFEKAVGREV-------AADYYLGQ-IYRRGY---LGKVYPQKALDHLLTAA--RNGQNSADFAIAQLFSQG 367 (452)
T ss_dssp ---HHHHHHHHTTTTTCH-------HHHHHHHH-HHHTTT---TSSCCHHHHHHHHHHHH--TTTCTTHHHHHHHHHHSC
T ss_pred ---HHHHHHHHHHhCCCH-------HHHHHHHH-HHHCCC---CCCcCHHHHHHHHHHHH--hhChHHHHHHHHHHHHhC
Confidence 122222221111110 00000100 000000 00112356777777653 369999999999999864
Q ss_pred CC-CcChHhhhhhhhcCCChHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhh
Q 024660 174 SP-ELDMARVSFHFVRGNNPEKFASTIVNFMGKCYPGEDDLAVARAILMYLSLGNMKDANYIMDEVKKQVEN 244 (264)
Q Consensus 174 ~~-~~~~~~A~~Hfl~~~d~~~~a~~L~ew~~~~~~~e~dlfiaRaVL~~L~l~n~~~A~~~~~~f~~~~~~ 244 (264)
.+ ..++.+|..+|-.+-+ .| .+........+...+.-+++..|..+...+.+.+++
T Consensus 368 ~g~~~d~~~A~~~~~~A~~-------------~g--~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~~~~ 424 (452)
T 3e4b_A 368 KGTKPDPLNAYVFSQLAKA-------------QD--TPEANDLATQLEAPLTPAQRAEGQRLVQQELAARGT 424 (452)
T ss_dssp TTBCCCHHHHHHHHHHHHT-------------TC--CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHH-------------CC--CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccc
Confidence 21 3366666666654321 11 111112222222233444667777888888777664
No 193
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=25.82 E-value=1.6e+02 Score=20.69 Aligned_cols=54 Identities=9% Similarity=0.089 Sum_probs=27.0
Q ss_pred HHhccCChhHHHHHHHHHHHHHHhhhCH-HHHHHHHHHHHHHHHHcCCcccHHHH
Q 024660 23 KIVNEGNFYGAQQMYKSISARYVAAQRY-SEALDLLHAGACLQLKNNQLTCGAEL 76 (264)
Q Consensus 23 ~~i~~G~~YEAhQ~~RTl~~Ry~~~kk~-~eAieLL~~GA~~ll~~~Q~~sa~DL 76 (264)
...+.|+|+.|.+-|+....|+...... ..-.+++..=+..+.+.|++..|.++
T Consensus 14 ~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~ 68 (104)
T 2v5f_A 14 VAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLL 68 (104)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHH
Confidence 3455666667766666666665322110 11224444445555555555544443
No 194
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=25.31 E-value=3.1e+02 Score=23.26 Aligned_cols=47 Identities=15% Similarity=0.123 Sum_probs=31.8
Q ss_pred CCCCchHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHcC
Q 024660 9 TALPPAQENIDKLEKIVNEGNFYGAQQMYKSISARYVAAQRYSEALDLLHAGACLQLKNN 68 (264)
Q Consensus 9 ~~~~~~~r~l~rl~~~i~~G~~YEAhQ~~RTl~~Ry~~~kk~~eAieLL~~GA~~ll~~~ 68 (264)
.+..+.++.+..+....++=| =.+++.+|++|++++..+=..+-...
T Consensus 6 ~~~~~~~~~~~wl~~~~deLD-------------v~IA~r~feeAv~lle~~~~~l~~~~ 52 (235)
T 2d2s_A 6 RDMSSTAQRLKFLDEGVEEID-------------IELARLRFESAVETLLDIESQLEDLS 52 (235)
T ss_dssp -CCCHHHHHHHHHHHHHHHHH-------------HHHHTTCHHHHHHHHHHHHHHHHHTC
T ss_pred cCCcccchhHHHHHcccHHHH-------------HHHHHHhHHHHHHHHHHHHHHHHhCc
Confidence 345566677777776665522 24677899999999998886665433
No 195
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=25.14 E-value=53 Score=26.28 Aligned_cols=30 Identities=17% Similarity=0.281 Sum_probs=26.9
Q ss_pred CCCHHHHHHHHHHHHhcCCCcChHhhhhhhhcC
Q 024660 157 TGSPELHVMLAEYLYSESPELDMARVSFHFVRG 189 (264)
Q Consensus 157 ~Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~~ 189 (264)
.|+|+-+..+|.+|...+ ++.+|..+|-.+
T Consensus 15 ~g~~~a~~~lg~~~~~~~---~~~~A~~~~~~a 44 (212)
T 3rjv_A 15 AGDRRAQYYLADTWVSSG---DYQKAEYWAQKA 44 (212)
T ss_dssp TTCHHHHHHHHHHHHHHT---CHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCC---CHHHHHHHHHHH
Confidence 499999999999999999 999999888764
No 196
>4fur_A Urease subunit gamma 2; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Brucella melitensis biovar abortus}
Probab=23.80 E-value=1.7e+02 Score=22.31 Aligned_cols=46 Identities=13% Similarity=0.037 Sum_probs=34.6
Q ss_pred HHHHHHhhh---CHHHHHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhhC
Q 024660 40 ISARYVAAQ---RYSEALDLLHAGACLQLKNNQLTCGAELAVSFVEALVKG 87 (264)
Q Consensus 40 l~~Ry~~~k---k~~eAieLL~~GA~~ll~~~Q~~sa~DL~~llvevl~~~ 87 (264)
++.|-.++| ||.||+.|+.+-.....+.|. +-+||+.+=-.+|...
T Consensus 23 lA~rR~~RGlkLN~pEAvAlIs~~v~E~aRdG~--sVaelM~~g~~~L~~~ 71 (104)
T 4fur_A 23 VALKRKNKGLKLNHPEAVAVLSAYVLDGAREGK--TVEEVMDGARSVLKAD 71 (104)
T ss_dssp HHHHHHHTTCCBCHHHHHHHHHHHHHHHHHTTC--CHHHHHHHHTTTSCGG
T ss_pred HHHHHHHcCcccCcHHHHHHHHHHHHHHHHCCC--CHHHHHHHHhhhCCHH
Confidence 344555555 999999999999999999886 7888876655555544
No 197
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=23.61 E-value=2.3e+02 Score=27.25 Aligned_cols=83 Identities=22% Similarity=0.088 Sum_probs=46.8
Q ss_pred hHHHHHHH--HhhhhcCCCCCCCHHHHHHHHHHHHhcCCCcChHhhhhhhhcCCChHHHHHHHHHHHhhcCCCchHHHHH
Q 024660 139 SSFLKAAI--KWSIEFGAPKTGSPELHVMLAEYLYSESPELDMARVSFHFVRGNNPEKFASTIVNFMGKCYPGEDDLAVA 216 (264)
Q Consensus 139 ~~fl~~ai--~WS~~~g~~~~Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl~~~d~~~~a~~L~ew~~~~~~~e~dlfia 216 (264)
...+++++ .|.... ...-.+++.+..+|..|...| ++.+|..+|-..- +-.|...+.+..
T Consensus 411 ~~~~~~al~~~~~~~~-~~~p~~~~~~~~~a~~~~~~g---~~~~A~~~~~~al--------------~~~p~~~~a~~~ 472 (681)
T 2pzi_A 411 LDSLRAARHGALDADG-VDFSESVELPLMEVRALLDLG---DVAKATRKLDDLA--------------ERVGWRWRLVWY 472 (681)
T ss_dssp HHHHHHHHTC--------CCTTCSHHHHHHHHHHHHHT---CHHHHHHHHHHHH--------------HHHCCCHHHHHH
T ss_pred HHHHHHhhhhcccccc-cccccchhHHHHHHHHHHhcC---CHHHHHHHHHHHh--------------ccCcchHHHHHH
Confidence 55666666 333322 122467889999999999999 9999888774211 012334444444
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHH
Q 024660 217 RAILMYLSLGNMKDANYIMDEVKK 240 (264)
Q Consensus 217 RaVL~~L~l~n~~~A~~~~~~f~~ 240 (264)
++.+ |+..++...|...|+..++
T Consensus 473 lg~~-~~~~g~~~~A~~~~~~al~ 495 (681)
T 2pzi_A 473 RAVA-ELLTGDYDSATKHFTEVLD 495 (681)
T ss_dssp HHHH-HHHHTCHHHHHHHHHHHHH
T ss_pred HHHH-HHHcCCHHHHHHHHHHHHH
Confidence 5543 3445556666555555544
No 198
>4ep8_A Urease subunit gamma; alpha-beta barrel, nickel metalloenzyme, hydrolase, radiatio; HET: KCX; 1.55A {Enterobacter aerogenes} PDB: 1a5l_A 1a5k_A 1a5n_A 1a5o_A 1ef2_C* 1ejr_A* 1ejs_A* 1ejt_A* 1eju_A* 1ejv_A* 1a5m_A* 1ejw_A* 1fwa_A* 1fwb_A* 1fwc_A* 1fwd_A* 1fwe_A* 1fwf_A* 1fwg_A* 1fwh_A* ...
Probab=22.27 E-value=1.7e+02 Score=22.22 Aligned_cols=46 Identities=20% Similarity=0.208 Sum_probs=33.9
Q ss_pred HHHHHHhhh---CHHHHHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhhC
Q 024660 40 ISARYVAAQ---RYSEALDLLHAGACLQLKNNQLTCGAELAVSFVEALVKG 87 (264)
Q Consensus 40 l~~Ry~~~k---k~~eAieLL~~GA~~ll~~~Q~~sa~DL~~llvevl~~~ 87 (264)
++.|-.++| ||.||+.|+.+-.....+.|. +-+||+.+=-.+|...
T Consensus 19 lA~rR~~RGlkLN~pEAvAlIs~~v~E~aRdG~--sVaelm~~g~~~L~~~ 67 (100)
T 4ep8_A 19 VAERRLARGLKLNYPESVALISAFIMEGARDGK--SVASLMEEGRHVLTRE 67 (100)
T ss_dssp HHHHHHHTTCCBCHHHHHHHHHHHHHHHHHHTC--CHHHHHHHGGGSCCGG
T ss_pred HHHHHHHcCcccCcHHHHHHHHHHHHHHHhcCC--CHHHHHHHHhhhcCHH
Confidence 344555555 999999999999999999996 6788875544444443
No 199
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=22.00 E-value=1.6e+02 Score=27.30 Aligned_cols=83 Identities=20% Similarity=0.141 Sum_probs=40.3
Q ss_pred hHHHHHHHHhhhhc--CCCCCCCHHHHHHHHHHHH---hcCC-CcChHhhhhhhhcCCChHHHHHHHHHHHhhcCCCchH
Q 024660 139 SSFLKAAIKWSIEF--GAPKTGSPELHVMLAEYLY---SESP-ELDMARVSFHFVRGNNPEKFASTIVNFMGKCYPGEDD 212 (264)
Q Consensus 139 ~~fl~~ai~WS~~~--g~~~~Gdp~LH~~la~~~~---~e~~-~~~~~~A~~Hfl~~~d~~~~a~~L~ew~~~~~~~e~d 212 (264)
...+..++.++... +........+...++.... +.+. .-+...|..--+.|.|++.-...+.... ++ +|..
T Consensus 212 ln~Le~a~~~a~~~~~~~~~It~e~v~~~l~~~~~~~dk~gd~~yd~isal~ksirgsd~daAl~~la~ml-~~--Gedp 288 (447)
T 3pvs_A 212 LNTLEMMADMAEVDDSGKRVLKPELLTEIAGERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARII-TA--GGDP 288 (447)
T ss_dssp HHHHHHHHHHSCBCTTSCEECCHHHHHHHHTCCCCC---CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HT--TCCH
T ss_pred HHHHHHHHHhcccccCCCCccCHHHHHHHHhhhhhccCCccchHHHHHHHHHHHHhCCCHHHHHHHHHHHH-Hc--CCCH
Confidence 66777777776522 2112333444444432211 0110 0012233334467788764322222222 22 6778
Q ss_pred HHHHHHHHHHHh
Q 024660 213 LAVARAILMYLS 224 (264)
Q Consensus 213 lfiaRaVL~~L~ 224 (264)
.||+|.++...+
T Consensus 289 ~~i~rrl~~~a~ 300 (447)
T 3pvs_A 289 LYVARRCLAIAS 300 (447)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 899999888776
No 200
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=21.81 E-value=1.3e+02 Score=27.12 Aligned_cols=29 Identities=10% Similarity=0.186 Sum_probs=21.7
Q ss_pred CCCHHHHHHHHHHHHhc-----CCCcChHhhhhhhhc
Q 024660 157 TGSPELHVMLAEYLYSE-----SPELDMARVSFHFVR 188 (264)
Q Consensus 157 ~Gdp~LH~~la~~~~~e-----~~~~~~~~A~~Hfl~ 188 (264)
+.+...|..+|.+|.+- | +..+|+.||=.
T Consensus 196 ~~~GsA~~~LG~lY~~vPp~~gG---d~ekA~~~fer 229 (301)
T 3u64_A 196 YQEGAVWNVLTKFYAAAPESFGG---GMEKAHTAFEH 229 (301)
T ss_dssp HHHHHHHHHHHHHHHHSCTTTTC---CHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHhCCCccCC---CHHHHHHHHHH
Confidence 34556899999999884 6 77788888753
No 201
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=21.01 E-value=3.9e+02 Score=22.82 Aligned_cols=39 Identities=10% Similarity=0.009 Sum_probs=30.0
Q ss_pred hHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHhcCCCcChHhhhhhhh
Q 024660 139 SSFLKAAIKWSIEFGAPKTGSPELHVMLAEYLYSESPELDMARVSFHFV 187 (264)
Q Consensus 139 ~~fl~~ai~WS~~~g~~~~Gdp~LH~~la~~~~~e~~~~~~~~A~~Hfl 187 (264)
....++|+.-. -.++..+..+|.+|...+ ++.+|..+|-
T Consensus 216 ~~~~~~al~~~-------p~~~~a~~~lg~~~~~~g---~~~~A~~~~~ 254 (336)
T 1p5q_A 216 IESCNKALELD-------SNNEKGLSRRGEAHLAVN---DFELARADFQ 254 (336)
T ss_dssp HHHHHHHHHHC-------TTCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHHHHhC-------CCcHHHHHHHHHHHHHCC---CHHHHHHHHH
Confidence 45556666532 247889999999999999 9999988874
No 202
>2oxl_A Hypothetical protein YMGB; bacterial protein, biofilm, acid resistance, DNA binding Pro dimer, gene regulation; HET: BOG; 1.80A {Escherichia coli}
Probab=20.86 E-value=2.1e+02 Score=19.72 Aligned_cols=50 Identities=8% Similarity=0.097 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhhCCCCCChhHHHHHHHHH
Q 024660 54 LDLLHAGACLQLKNNQLTCGAELAVSFVEALVKGKVAYDNENLDRVRKIY 103 (264)
Q Consensus 54 ieLL~~GA~~ll~~~Q~~sa~DL~~llvevl~~~~~~~~~~~~~rl~~l~ 103 (264)
.++|-.-...+++.|+.-+--+++..+|.-|+...-++....+.++.+++
T Consensus 7 ~e~Lg~iv~eil~~g~~vsnKaIi~~LI~rLE~~~d~~~~d~yR~lLe~v 56 (64)
T 2oxl_A 7 SAVLGQAVTNLMLSGDNVNNKNIILSLIHSLETTSDILKADVIRKTLEIV 56 (64)
T ss_dssp HHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 46777777889999999999999999999999887555555444444433
No 203
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=20.84 E-value=1.5e+02 Score=22.52 Aligned_cols=66 Identities=12% Similarity=0.178 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhhCCCCCChhHHHHHHHHHHhCCCCCCCCCCCCCchHHHHHHHHh
Q 024660 50 YSEALDLLHAGACLQLKNNQLTCGAELAVSFVEALVKGKVAYDNENLDRVRKIYELFPQIPVPHNLEDDDDLHELTEALG 129 (264)
Q Consensus 50 ~~eAieLL~~GA~~ll~~~Q~~sa~DL~~llvevl~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~l~~~~~~~~~~~~~~ 129 (264)
+...++.|++|-.. -..|+.+| .+-+...++.++++.++++++|...+.-++
T Consensus 10 ~~~~~~~~~~~~~~-----~~Vsae~L----~eEfdefGi~~~d~VldKc~ELC~~y~lda------------------- 61 (101)
T 2keb_A 10 HGSSLEVLFQGPGS-----MSASAQQL----AEELQIFGLDCEEALIEKLVELCVQYGQNE------------------- 61 (101)
T ss_dssp -------------------CCCCHHHH----HHHHHHHTCBCCHHHHHHHHHHHHHHTCCH-------------------
T ss_pred cCccchheeeCCch-----hhccHHHH----HHHHHHcCCCCCHHHHHHHHHHHHHcCCCH-------------------
Confidence 45677888877532 23455555 667799999999999999999999886421
Q ss_pred hhhhhhhhhhHHHHHHHHhhhhc
Q 024660 130 AAKLRVEGCSSFLKAAIKWSIEF 152 (264)
Q Consensus 130 ~~~~~~~~~~~fl~~ai~WS~~~ 152 (264)
..|+..=+.+|.+.
T Consensus 62 ---------~e~VeeWmAFsts~ 75 (101)
T 2keb_A 62 ---------EGMVGELIAFCTST 75 (101)
T ss_dssp ---------HHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHHhc
Confidence 67777778887753
No 204
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=20.39 E-value=5e+02 Score=23.80 Aligned_cols=88 Identities=6% Similarity=0.053 Sum_probs=61.3
Q ss_pred HHHHHHhccCChhHHHHHHHHHHHHHHh--hhCHHHHHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhhCCCCCC---h
Q 024660 19 DKLEKIVNEGNFYGAQQMYKSISARYVA--AQRYSEALDLLHAGACLQLKNNQLTCGAELAVSFVEALVKGKVAYD---N 93 (264)
Q Consensus 19 ~rl~~~i~~G~~YEAhQ~~RTl~~Ry~~--~kk~~eAieLL~~GA~~ll~~~Q~~sa~DL~~llvevl~~~~~~~~---~ 93 (264)
+.++..-..|+|=||..+|+-......+ -.++..-...+..=+..+...|++..|..+..-.++++++.-=+-. -
T Consensus 303 e~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a 382 (433)
T 3qww_A 303 EEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVA 382 (433)
T ss_dssp HHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHH
T ss_pred HHHHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 3444444567888898888766554433 2456677777888888888889999999999988888887533322 3
Q ss_pred hHHHHHHHHHHhC
Q 024660 94 ENLDRVRKIYELF 106 (264)
Q Consensus 94 ~~~~rl~~l~~~~ 106 (264)
..+++|..++..-
T Consensus 383 ~~l~nLa~~~~~q 395 (433)
T 3qww_A 383 SMWLKLGRLYMGL 395 (433)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhc
Confidence 4567777777754
No 205
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=20.28 E-value=3.3e+02 Score=25.36 Aligned_cols=99 Identities=11% Similarity=0.178 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHhc-------CCCcCh----HhhhhhhhcCCChHHHHHHHH--HHHhh---cCCCchHHHHHHHHHHHH
Q 024660 160 PELHVMLAEYLYSE-------SPELDM----ARVSFHFVRGNNPEKFASTIV--NFMGK---CYPGEDDLAVARAILMYL 223 (264)
Q Consensus 160 p~LH~~la~~~~~e-------~~~~~~----~~A~~Hfl~~~d~~~~a~~L~--ew~~~---~~~~e~dlfiaRaVL~~L 223 (264)
+++|..++..+-.. .+...+ .++.+|++.+++.+..++++. .|+.. .. +... ++.- -+.|+
T Consensus 454 ~~~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~a~~~~~~~~l~~~~~~l~~~l~~~-~~~~-~l~d-~~~~~ 530 (591)
T 1z6t_A 454 QDLHKKIITQFQRYHQPHTLSPDQEDCMYWYNFLAYHMASAKMHKELCALMFSLDWIKAKTELV-GPAH-LIHE-FVEYR 530 (591)
T ss_dssp HHHHHHHHHHHTTTCCGGGCCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHSCHHHHHHHHHHH-CSHH-HHHH-HHHTG
T ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCCEEeehhhHHHHHHhcCCHHHHHHHHhCHHHHHHHHHhC-CcHH-HHHH-HHHHH
Confidence 35677777766331 111122 458999999999887777774 46542 11 1111 2221 11233
Q ss_pred hcCChhHHHHHHHHHHHHhhhhhcCCCCCchhHHHHHHh
Q 024660 224 SLGNMKDANYIMDEVKKQVENKQLQLQPSDLIQFVFYVL 262 (264)
Q Consensus 224 ~l~n~~~A~~~~~~f~~~~~~~~~~~~~~PLLNFl~~Ll 262 (264)
-.-+.+.... +..+.+.++....-....|..+++||++
T Consensus 531 ~vl~~e~~~~-l~~~l~~L~~~~~~l~~~~~~~~~ql~l 568 (591)
T 1z6t_A 531 HILDEKDCAV-SENFQEFLSLNGHLLGRQPFPNIVQLGL 568 (591)
T ss_dssp GGSCHHHHHH-HHHHHHHHHHTTTTTTCSSCCCHHHHHT
T ss_pred hhcchhhHHH-HHHHHHHHHhcchhhcCCCCCChhhHhh
Confidence 3334444432 2344444443322222345667777765
Done!