BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024662
(264 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P73555|Y875_SYNY3 Uncharacterized membrane protein sll0875 OS=Synechocystis sp.
(strain PCC 6803 / Kazusa) GN=sll0875 PE=3 SV=1
Length = 258
Score = 145 bits (366), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 82/164 (50%), Positives = 109/164 (66%), Gaps = 4/164 (2%)
Query: 80 WQSALLSNVVIFVLGSPILVSGLSPSGIAAAFLLGTLTWRAFGPSGFLLVATYFIIGTAA 139
W SA++ N + L + L+P G A++LG + W A G G+L+V YF +G+A
Sbjct: 18 WLSAVILNSFLLALAAIAPKKLLTPWGYGHAWVLGVIIWAALGWRGYLVVLAYFFVGSAV 77
Query: 140 TKVKMAQKEAQGVAEKRKGRRGPGSVIGSSAAGCVCAFLSIFGVGGFEFSRLW-QLGFVA 198
T++ +KEA G+AEKR G+RGP +V GS+ +CA FG E +LW LG+VA
Sbjct: 78 TRIGQKEKEAAGIAEKRSGQRGPENVWGSALTAALCALAIAFGP---EPWQLWLALGYVA 134
Query: 199 SFCTKLSDTVSSEIGKAYGKTTYLVTTFKVVPRGTEGAVSVEGT 242
SF TKLSDT +SE+GKAYGK T+L+TT + VPRGTEGAVSVEGT
Sbjct: 135 SFSTKLSDTTASEVGKAYGKNTFLITTLQPVPRGTEGAVSVEGT 178
>sp|Q58343|Y933_METJA Uncharacterized membrane protein MJ0933 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ0933 PE=3 SV=1
Length = 238
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 68/124 (54%), Gaps = 11/124 (8%)
Query: 136 GTAATKVKMAQKEAQGVAEKRKGRRGPGSVIGSSAAGCVCAFLSIFGVGGFEFSRLWQL- 194
G ++V + +K+A+ + E + + +V+ + + A L+IFG W L
Sbjct: 66 GVLVSRVGLEKKKAKKMDETCRSLK---NVLANGLIPILFAILAIFGFN-------WALI 115
Query: 195 GFVASFCTKLSDTVSSEIGKAYGKTTYLVTTFKVVPRGTEGAVSVEGTFAGIFASILLAW 254
G+++S SDT SSE+G + L+TTF+VV +GT+GA+++ GT AG+ + L+
Sbjct: 116 GYISSIAAATSDTFSSELGILSNEKPRLITTFEVVEKGTDGAITIFGTLAGVLGAFLIGL 175
Query: 255 VGCL 258
G L
Sbjct: 176 FGYL 179
>sp|Q96HH6|TMM19_HUMAN Transmembrane protein 19 OS=Homo sapiens GN=TMEM19 PE=2 SV=1
Length = 336
Score = 38.1 bits (87), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 57/133 (42%), Gaps = 18/133 (13%)
Query: 132 YFIIGTAATKVKMAQKEAQGVAEKRKGRRGPGSVIGSSAAGCVCAFLSIFGVGGFE---- 187
+F+ + TK K K+ K G+R V + A A L + G E
Sbjct: 103 FFLSSSKLTKWKGEVKKRLDSEYKEGGQRNWVQVFCNGAVPTELALLYMIENGPGEIPVD 162
Query: 188 ----FSRLWQ-LGFVASFCTKLSDTVSSEIGKAYGKTT-YLVTTFKVVPRGTEGAVSVE- 240
+S W L +A+ DT +SE+G K++ L+TT++ VP GT G V+V
Sbjct: 163 FSKQYSASWMCLSLLAALACSAGDTWASEVGPVLSKSSPRLITTWEKVPVGTNGGVTVVG 222
Query: 241 -------GTFAGI 246
GTF GI
Sbjct: 223 LVSSLLGGTFVGI 235
>sp|Q0P4L9|TMM19_XENTR Transmembrane protein 19 OS=Xenopus tropicalis GN=tmem19 PE=2 SV=1
Length = 336
Score = 38.1 bits (87), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 75/178 (42%), Gaps = 13/178 (7%)
Query: 80 WQSALLSNVVIFVLGSPILVSGLSPSGIAAAFLLGTLTWRAFGPSGFLLVATYFIIGTAA 139
W ++L+ ++I G I L SG L+G + A S F + T+F I +
Sbjct: 54 WLVSVLTPIIIVWHG--IKKRSLDNSGALGGLLVGFILTIA-NYSFFSALLTFFFISSKL 110
Query: 140 TKVKMAQKEAQGVAEKRKGRRGPGSVIGSSAAGCVCAFLSIFGVG--------GFEFSRL 191
TK K K+ K G+R V + A L + G E++
Sbjct: 111 TKWKGEVKKCYDSEYKEGGQRNWVQVFCNGGLPAELALLYMIENGPGEIPIDFSKEYTAS 170
Query: 192 WQ-LGFVASFCTKLSDTVSSEIGKAYGKTT-YLVTTFKVVPRGTEGAVSVEGTFAGIF 247
W L + + + DT +SEIG K++ L+TT++ VP GT G V+ G + +
Sbjct: 171 WMCLSLLGALASSAGDTWASEIGPVLSKSSPRLITTWEKVPVGTNGGVTPVGLISSLL 228
>sp|Q5RF73|TMM19_PONAB Transmembrane protein 19 OS=Pongo abelii GN=TMEM19 PE=2 SV=1
Length = 336
Score = 37.7 bits (86), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 56/133 (42%), Gaps = 18/133 (13%)
Query: 132 YFIIGTAATKVKMAQKEAQGVAEKRKGRRGPGSVIGSSAAGCVCAFLSIFGVGGFE---- 187
+F+ + TK K K+ K G+R V + A A L + G E
Sbjct: 103 FFLSSSKLTKWKGEMKKRLDSEYKEGGQRNWIQVFCNGAVPTELALLYMIENGPGEIPVD 162
Query: 188 ----FSRLWQ-LGFVASFCTKLSDTVSSEIGKAYGKTT-YLVTTFKVVPRGTEGAVSVE- 240
+S W L +A+ DT +SE+G K+ L+TT++ VP GT G V+V
Sbjct: 163 FSKQYSASWMCLSLLAALACSAGDTWASEVGPVLSKSPPRLITTWEKVPVGTNGGVTVVG 222
Query: 241 -------GTFAGI 246
GTF GI
Sbjct: 223 LVSSLLGGTFVGI 235
>sp|Q9TTK4|LYST_BOVIN Lysosomal-trafficking regulator OS=Bos taurus GN=LYST PE=1 SV=1
Length = 3796
Score = 35.8 bits (81), Expect = 0.35, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 11/91 (12%)
Query: 21 SLQKTPKFEFPIFRNPNISN--STSNC----NSSKMLLLHRANAAPSLQVAVSEAMNLVQ 74
++ + FP+ PN+SN S+ C NS M LL RA + S + SE+
Sbjct: 1386 TMSPSQYLTFPLLHTPNLSNGVSSQKCPGILNSKAMGLLRRARVSQSKKEGDSESFPQQL 1445
Query: 75 LSQPTWQSALLSNVVIFVLGSPILVSGLSPS 105
LS +W ++ V + +LG P L G S S
Sbjct: 1446 LS--SWH---IAPVHLPLLGQPHLSEGFSIS 1471
>sp|Q6IR76|TMM19_XENLA Transmembrane protein 19 OS=Xenopus laevis GN=tmem19 PE=2 SV=1
Length = 336
Score = 32.3 bits (72), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 187 EFSRLWQ-LGFVASFCTKLSDTVSSEIGKAYGKTT-YLVTTFKVVPRGTEGAVSVEGTFA 244
E++ W L + + DT +SEIG K+ L+TT++ VP GT G V+ G +
Sbjct: 166 EYTASWMCLSLLGALSCSAGDTWASEIGPVLSKSAPRLITTWEKVPVGTNGGVTPIGLIS 225
Query: 245 GIFASI 250
+ I
Sbjct: 226 SLLGGI 231
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.134 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,980,448
Number of Sequences: 539616
Number of extensions: 3343828
Number of successful extensions: 8821
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 8815
Number of HSP's gapped (non-prelim): 17
length of query: 264
length of database: 191,569,459
effective HSP length: 115
effective length of query: 149
effective length of database: 129,513,619
effective search space: 19297529231
effective search space used: 19297529231
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)