Query 024662
Match_columns 264
No_of_seqs 161 out of 418
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 06:26:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024662.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024662hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00297 conserved hypothetic 100.0 6.8E-56 1.5E-60 400.1 18.3 180 79-263 3-182 (237)
2 PF01940 DUF92: Integral membr 100.0 5.9E-55 1.3E-59 391.4 17.6 171 91-263 7-177 (226)
3 COG1836 Predicted membrane pro 100.0 2.4E-50 5.2E-55 363.9 17.8 179 79-262 12-190 (247)
4 KOG4491 Predicted membrane pro 100.0 3.2E-42 6.9E-47 313.2 13.2 183 76-261 37-231 (323)
5 COG0170 SEC59 Dolichol kinase 94.3 0.57 1.2E-05 42.2 10.6 53 193-255 114-166 (216)
6 PF01148 CTP_transf_1: Cytidyl 93.5 0.14 3.1E-06 44.6 5.2 54 195-257 132-185 (259)
7 COG0575 CdsA CDP-diglyceride s 77.1 7.2 0.00016 35.8 6.3 56 194-257 135-190 (265)
8 PF12188 STAT2_C: Signal trans 58.5 4.3 9.2E-05 30.1 0.6 41 11-53 2-43 (56)
9 PRK10484 putative transporter; 58.4 57 0.0012 32.6 8.7 26 93-118 421-446 (523)
10 PRK09395 actP acetate permease 56.1 37 0.00081 34.2 7.0 25 94-118 450-474 (551)
11 KOG2468 Dolichol kinase [Lipid 55.9 9.3 0.0002 39.0 2.7 54 193-257 410-463 (510)
12 PRK12488 acetate permease; Pro 54.4 59 0.0013 32.9 8.1 24 94-117 448-471 (549)
13 PF01102 Glycophorin_A: Glycop 50.3 15 0.00032 31.0 2.7 25 106-134 64-88 (122)
14 COG1585 Membrane protein impli 49.7 51 0.0011 28.0 5.9 39 102-143 27-65 (140)
15 PF10031 DUF2273: Small integr 46.0 46 0.001 24.0 4.3 40 103-143 10-49 (51)
16 COG3030 FxsA Protein affecting 45.1 87 0.0019 27.6 6.7 52 126-178 33-84 (158)
17 PF11166 DUF2951: Protein of u 43.3 29 0.00062 28.5 3.2 24 238-261 75-98 (98)
18 KOG0424 Ubiquitin-protein liga 40.3 53 0.0011 29.0 4.6 59 18-78 64-125 (158)
19 PRK13592 ubiA prenyltransferas 34.1 4.2E+02 0.0091 25.6 10.0 30 138-167 185-214 (299)
20 PF11014 DUF2852: Protein of u 33.6 96 0.0021 26.1 4.9 33 104-140 8-40 (115)
21 TIGR02121 Na_Pro_sym sodium/pr 33.4 2.6E+02 0.0056 27.6 8.8 24 95-118 411-434 (487)
22 PRK15419 proline:sodium sympor 33.3 2.2E+02 0.0048 28.3 8.3 24 95-118 418-441 (502)
23 PF13829 DUF4191: Domain of un 32.7 2.6E+02 0.0055 26.1 8.0 26 63-89 10-35 (224)
24 TIGR03648 Na_symport_lg probab 32.6 1.5E+02 0.0034 29.8 7.2 25 94-118 458-482 (552)
25 PF11992 DUF3488: Domain of un 32.0 4.4E+02 0.0096 24.9 10.5 18 158-175 98-115 (325)
26 TIGR02711 symport_actP cation/ 31.4 1.5E+02 0.0032 30.1 6.8 24 94-117 448-471 (549)
27 KOG2881 Predicted membrane pro 30.2 1.3E+02 0.0028 29.1 5.8 61 76-145 82-153 (294)
28 COG5336 Uncharacterized protei 27.8 1.1E+02 0.0024 25.8 4.4 57 104-161 53-113 (116)
29 COG4854 Predicted membrane pro 27.3 3.1E+02 0.0067 23.4 6.9 67 104-171 9-81 (126)
30 PF05478 Prominin: Prominin; 27.2 2.6E+02 0.0056 30.0 8.0 63 79-141 413-492 (806)
31 PF04156 IncA: IncA protein; 25.7 2.5E+02 0.0054 23.9 6.4 15 82-96 10-24 (191)
32 PRK09442 panF sodium/panthothe 25.5 3.2E+02 0.007 26.9 7.9 25 94-118 412-436 (483)
33 TIGR02119 panF sodium/pantothe 25.2 2.9E+02 0.0062 27.0 7.4 25 94-118 410-434 (471)
34 PF08570 DUF1761: Protein of u 25.2 3.7E+02 0.0079 21.7 7.0 14 143-156 24-37 (126)
35 PRK09459 pspG phage shock prot 24.7 67 0.0014 25.3 2.4 26 236-261 18-43 (76)
36 PLN02594 phosphatidate cytidyl 24.4 1.3E+02 0.0028 29.6 4.8 49 199-256 131-179 (342)
37 PRK14416 membrane protein; Pro 22.7 5.2E+02 0.011 23.5 8.1 25 95-119 126-150 (200)
38 PF00950 ABC-3: ABC 3 transpor 22.5 2.5E+02 0.0055 25.8 6.1 53 95-147 26-79 (257)
39 cd06550 TM_ABC_iron-siderophor 22.2 3.7E+02 0.008 24.1 7.1 44 80-123 5-50 (261)
40 PF12301 CD99L2: CD99 antigen 21.6 76 0.0016 28.2 2.4 30 232-261 106-135 (169)
41 TIGR00023 acyl-phosphate glyce 21.5 5.1E+02 0.011 23.3 7.7 58 97-156 135-192 (196)
42 PRK14402 membrane protein; Pro 21.2 3.6E+02 0.0078 24.4 6.7 59 97-156 134-192 (198)
43 PF07019 Rab5ip: Rab5-interact 21.2 2E+02 0.0044 21.7 4.4 14 161-174 57-70 (81)
44 PLN02953 phosphatidate cytidyl 21.2 8.7E+02 0.019 24.6 13.4 50 198-256 274-323 (403)
45 COG3167 PilO Tfp pilus assembl 21.2 53 0.0011 30.2 1.4 32 207-242 152-187 (211)
46 PRK14400 membrane protein; Pro 20.8 3.4E+02 0.0074 24.6 6.5 56 96-151 140-195 (201)
47 PRK14405 membrane protein; Pro 20.7 4.6E+02 0.0099 23.7 7.3 59 97-156 136-194 (202)
48 PTZ00390 ubiquitin-conjugating 20.2 1.5E+02 0.0033 25.3 3.9 58 17-78 56-116 (152)
49 COG1296 AzlC Predicted branche 20.2 7.1E+02 0.015 23.2 9.1 44 79-122 166-209 (238)
50 COG2155 Uncharacterized conser 20.1 61 0.0013 25.7 1.4 34 111-144 14-47 (79)
No 1
>TIGR00297 conserved hypothetical protein TIGR00297.
Probab=100.00 E-value=6.8e-56 Score=400.06 Aligned_cols=180 Identities=39% Similarity=0.640 Sum_probs=166.6
Q ss_pred hhHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhhhhhhcchhhhhhhhhhhhcCC
Q 024662 79 TWQSALLSNVVIFVLGSPILVSGLSPSGIAAAFLLGTLTWRAFGPSGFLLVATYFIIGTAATKVKMAQKEAQGVAEKRKG 158 (264)
Q Consensus 79 ~w~~a~~~n~~l~~~~~~~~~k~LT~sGa~aA~lvG~l~~~~~G~~g~llLl~FFlssS~~TK~k~~~K~~l~~aekk~G 158 (264)
+|.++++++.+ +...+||+|+||++|+++|+++|++++..+|++|+.+++.||++||++||+|+++|++++++|||+|
T Consensus 3 ~~~~a~~~~~~--l~~~~~~~~~L~~sG~~~a~~vG~~~~~~~g~~~~~~ll~Ff~~sS~~Tk~~~~~K~~~~~~e~~gg 80 (237)
T TIGR00297 3 LWLSAVILCVF--LLALAAYAPLLDPWGYGHAWIMGVIIILFAGFRGLLVILAFFFLGSAVTRYGQEEKKAAGIAEKRSG 80 (237)
T ss_pred HHHHHHHHHHH--HHHHHHHHccCCHhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHhccHHHHHhcccccccCC
Confidence 59999999876 5556699999999999999999999988899999999999999999999999999999999999999
Q ss_pred ccCcccccccchHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhcchhhhhhhcccCCCeeEeeCCccCCCCCCcccc
Q 024662 159 RRGPGSVIGSSAAGCVCAFLSIFGVGGFEFSRLWQLGFVASFCTKLSDTVSSEIGKAYGKTTYLVTTFKVVPRGTEGAVS 238 (264)
Q Consensus 159 ~R~~~QVlaNg~va~l~All~~~~~~~~~~~~~~~l~fvas~Aaa~ADTwASEIG~ls~~~PrLITT~K~VppGTnGgVS 238 (264)
+||++||++||+++++|++++.+... .+..+.++|++++||++|||||||||++|+++||+||||||||||||||||
T Consensus 81 ~R~~~qVlaNg~~~~~~al~~~~~~~---~~~~~~~~f~~s~A~a~aDT~ASEiG~ls~~~p~lItt~k~V~~GT~GgVS 157 (237)
T TIGR00297 81 QRGPKNVWGNGLTPALFALAIAFGPE---WDLWLALGYVASVATALSDTMASEIGKAYGKNPRLITTLQRVEPGTDGAIS 157 (237)
T ss_pred CCCHHHHHHhhHHHHHHHHHHHhccc---chHHHHHHHHHHHHHHHcchHHHhhhhccCCCCeEeecCccCCCCCCCccc
Confidence 99999999999999999998877533 355778999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcccC
Q 024662 239 VEGTFAGIFASILLAWVGCLTGQCA 263 (264)
Q Consensus 239 llGtlAsllGs~lIa~va~llg~i~ 263 (264)
++||+|+++|+++|+.+++++++++
T Consensus 158 ~~Gt~As~~Ga~~I~~~~~~~~~~~ 182 (237)
T TIGR00297 158 VEGTLAGFAGALAIALLGYLLGLIS 182 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999998887643
No 2
>PF01940 DUF92: Integral membrane protein DUF92; InterPro: IPR002794 Many members of this family have no known function and are predicted to be integral membrane proteins.; GO: 0016021 integral to membrane
Probab=100.00 E-value=5.9e-55 Score=391.39 Aligned_cols=171 Identities=37% Similarity=0.464 Sum_probs=160.5
Q ss_pred HHHHHhHhhcCCChHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhhhhhhcchhhhhhhhhhhhcCCccCcccccccch
Q 024662 91 FVLGSPILVSGLSPSGIAAAFLLGTLTWRAFGPSGFLLVATYFIIGTAATKVKMAQKEAQGVAEKRKGRRGPGSVIGSSA 170 (264)
Q Consensus 91 ~~~~~~~~~k~LT~sGa~aA~lvG~l~~~~~G~~g~llLl~FFlssS~~TK~k~~~K~~l~~aekk~G~R~~~QVlaNg~ 170 (264)
++...+||+|+||++|+++|+++|++++...||+++++|+.||++||++||+|+++|++++++|+|+|+|||+||+|||+
T Consensus 7 ~l~~~a~~~k~Lt~sGa~aa~~vG~~~~~~~g~~~~~~L~~FF~~ss~~Tk~~~~~K~~~~~~~~~~g~R~~~QVlaNg~ 86 (226)
T PF01940_consen 7 LLAILAYKKKSLTLSGALAAFLVGTLIYGFGGWPWFLLLLAFFISSSLATKYKKERKEKLGEAEKKGGRRDWWQVLANGG 86 (226)
T ss_pred HHHHHHHHHCCCCHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhCChHHHHHhcccccCCCCCChHHhhhccH
Confidence 45668899999999999999999999998999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhcchhhhhhhcccCCCeeEeeCCccCCCCCCcccchhhHHHHHHHHH
Q 024662 171 AGCVCAFLSIFGVGGFEFSRLWQLGFVASFCTKLSDTVSSEIGKAYGKTTYLVTTFKVVPRGTEGAVSVEGTFAGIFASI 250 (264)
Q Consensus 171 va~l~All~~~~~~~~~~~~~~~l~fvas~Aaa~ADTwASEIG~ls~~~PrLITT~K~VppGTnGgVSllGtlAsllGs~ 250 (264)
++++|+++|.+.+ ...++.+.++|++++|||+|||||||||++|+++||+||||||||||||||||++||+|+++|++
T Consensus 87 ~a~~~al~~~~~~--~~~~~~~~~~~~~s~A~a~aDTwASEiG~ls~~~P~lItt~k~V~~Gt~GgVS~lGt~as~~Ga~ 164 (226)
T PF01940_consen 87 VAALCALLYAFFP--STPAPLLLLAFLGSIAAANADTWASEIGVLSKGPPRLITTFKRVPPGTSGGVSLLGTLASLAGAL 164 (226)
T ss_pred HHHHHHHHHHHhc--ccchHHHHHHHHHHHHHHhhhHHHHhhhhhcCCCCeEeeCCcCCCCCCCCeechHHHHHHHHHHH
Confidence 9999999887753 12467899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccC
Q 024662 251 LLAWVGCLTGQCA 263 (264)
Q Consensus 251 lIa~va~llg~i~ 263 (264)
+|++++++++..+
T Consensus 165 ~Ia~~~~~~~~~~ 177 (226)
T PF01940_consen 165 LIALVAFLLGLIS 177 (226)
T ss_pred HHHHHHHHHHccc
Confidence 9999999988543
No 3
>COG1836 Predicted membrane protein [Function unknown]
Probab=100.00 E-value=2.4e-50 Score=363.89 Aligned_cols=179 Identities=39% Similarity=0.467 Sum_probs=167.4
Q ss_pred hhHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhhhhhhcchhhhhhhhhhhhcCC
Q 024662 79 TWQSALLSNVVIFVLGSPILVSGLSPSGIAAAFLLGTLTWRAFGPSGFLLVATYFIIGTAATKVKMAQKEAQGVAEKRKG 158 (264)
Q Consensus 79 ~w~~a~~~n~~l~~~~~~~~~k~LT~sGa~aA~lvG~l~~~~~G~~g~llLl~FFlssS~~TK~k~~~K~~l~~aekk~G 158 (264)
+|+.++++++. ....+||.|.||++|.++|+++|.+++...||.||++++.||++||.+||+|+++|++++.+|+++|
T Consensus 12 ~~l~all~~~~--L~~la~~~k~Ld~~G~~~A~~lG~~i~~~~g~~~fllll~Ff~~g~l~Tk~~~~~K~~~gvaE~~~g 89 (247)
T COG1836 12 PLLLALLLILF--LGALAYKAKALDLSGSLSAILLGALIIVFGGFKWFLLLLIFFALGSLATKYKYEEKEALGVAEGRDG 89 (247)
T ss_pred HHHHHHHHHHH--HHHHHHHhccCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccc
Confidence 49999999886 4556699999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcccccccchHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhcchhhhhhhcccCCCeeEeeCCccCCCCCCcccc
Q 024662 159 RRGPGSVIGSSAAGCVCAFLSIFGVGGFEFSRLWQLGFVASFCTKLSDTVSSEIGKAYGKTTYLVTTFKVVPRGTEGAVS 238 (264)
Q Consensus 159 ~R~~~QVlaNg~va~l~All~~~~~~~~~~~~~~~l~fvas~Aaa~ADTwASEIG~ls~~~PrLITT~K~VppGTnGgVS 238 (264)
.|+.+||++|++++.+|+++|...++ .+.++..+|++|+|+++|||||||||+.++++|||||||||||||||||||
T Consensus 90 ~R~~~NV~gn~l~~~l~av~~~~~~~---~~~~~~~~~~~SvAta~aDT~ASEiG~~~~~~p~lITtfkrV~~Gt~GaVS 166 (247)
T COG1836 90 ARSLENVLGNGLAALLFAVLYAIYPD---PQLWFLGGFAASVATANADTLASEIGKAYGKRPRLITTFKRVEPGTSGAVS 166 (247)
T ss_pred cccHHHHhhccHHHHHHHHHHHhCCC---chHHHHHHHHHHHHHHhhhHHHHHHhHhhCCCeEEEEeeeEcCCCCCCccc
Confidence 99999999999999999998855432 245788999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHhccc
Q 024662 239 VEGTFAGIFASILLAWVGCLTGQC 262 (264)
Q Consensus 239 llGtlAsllGs~lIa~va~llg~i 262 (264)
++||+|+++|+++|++++++++.+
T Consensus 167 ~~GelAav~Ga~iIal~~~l~~~~ 190 (247)
T COG1836 167 LVGELAAVAGAFIIALLSYLVGYI 190 (247)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999876
No 4
>KOG4491 consensus Predicted membrane protein [Function unknown]
Probab=100.00 E-value=3.2e-42 Score=313.19 Aligned_cols=183 Identities=23% Similarity=0.293 Sum_probs=158.3
Q ss_pred cCc-hhHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhhhhhhcchhhhhhhhhhh
Q 024662 76 SQP-TWQSALLSNVVIFVLGSPILVSGLSPSGIAAAFLLGTLTWRAFGPSGFLLVATYFIIGTAATKVKMAQKEAQGVAE 154 (264)
Q Consensus 76 ~~~-~w~~a~~~n~~l~~~~~~~~~k~LT~sGa~aA~lvG~l~~~~~G~~g~llLl~FFlssS~~TK~k~~~K~~l~~ae 154 (264)
.+| +|+.++++..+ +...+||+|+|+.||++++++||++.-. ..-+.|..|++||++||.+||+|++.|++++.+|
T Consensus 37 ipp~RwlFsvvvp~l--i~~~~lkrkSld~SGa~~G~lV~filtI-a~h~ff~sl~~fF~sss~~tkfr~~~k~r~~s~~ 113 (323)
T KOG4491|consen 37 IPPWRWLFSVVVPVL--IVSNGLKRKSLDHSGALGGLLVGFILTI-ANHSFFTSLLMFFLSSSKLTKFRGEVKKRLDSEY 113 (323)
T ss_pred CCcHHHHHHHHHHHH--HHHHHHhhcccccccchhHHHHHHHHHH-hcchhHHHHHHHHHccchhhhHHHHHHHHHHHHH
Confidence 344 99999999876 4456799999999999999999987421 2344588999999999999999999999999888
Q ss_pred hcC-CccCcccccccchHHHHHHHHHHHhcCCcc---------hHHHHHHHHHHHHHHhhcchhhhhhh-cccCCCeeEe
Q 024662 155 KRK-GRRGPGSVIGSSAAGCVCAFLSIFGVGGFE---------FSRLWQLGFVASFCTKLSDTVSSEIG-KAYGKTTYLV 223 (264)
Q Consensus 155 kk~-G~R~~~QVlaNg~va~l~All~~~~~~~~~---------~~~~~~l~fvas~Aaa~ADTwASEIG-~ls~~~PrLI 223 (264)
+|+ |||+|.||+|||+++..++++|....++.. ...++.++.++++|||++|||+||+| ++|++.||+|
T Consensus 114 ~eg~GQRNWvQVlCNggva~~Lally~~~~G~ge~~vDf~~~y~~swl~~~~~~a~ACcnGDTWsSElG~VLS~~~PrlI 193 (323)
T KOG4491|consen 114 KEGLGQRNWVQVLCNGGVATELALLYMIENGPGEIPVDFSKQYSASWLCLSLLAALACCNGDTWSSELGPVLSKSSPRLI 193 (323)
T ss_pred hhccCccchhhhhcCCcchHHHHHHHHHhcCCCccccchHHHHHHHHHHHHHHHHHHhcCCChhhhhhcchhccCCCceE
Confidence 875 999999999999999999999887665421 13456789999999999999999999 9999999999
Q ss_pred eCCccCCCCCCcccchhhHHHHHHHHHHHHHHHHHhcc
Q 024662 224 TTFKVVPRGTEGAVSVEGTFAGIFASILLAWVGCLTGQ 261 (264)
Q Consensus 224 TT~K~VppGTnGgVSllGtlAsllGs~lIa~va~llg~ 261 (264)
|||||||+|||||||+.|.+++++|+.++++--++.++
T Consensus 194 tTw~~Vp~GTNGGVt~~Gl~~sLlgGt~VG~~yf~t~l 231 (323)
T KOG4491|consen 194 TTWEKVPVGTNGGVTVVGLVSSLLGGTFVGIAYFLTQL 231 (323)
T ss_pred EeeeecccCCCCCEeeHHHHHHHhccceeehHhhhhhh
Confidence 99999999999999999999999999999775544443
No 5
>COG0170 SEC59 Dolichol kinase [Lipid metabolism]
Probab=94.27 E-value=0.57 Score=42.18 Aligned_cols=53 Identities=32% Similarity=0.470 Sum_probs=42.6
Q ss_pred HHHHHHHHHHhhcchhhhhhhcccCCCeeEeeCCccCCCCCCcccchhhHHHHHHHHHHHHHH
Q 024662 193 QLGFVASFCTKLSDTVSSEIGKAYGKTTYLVTTFKVVPRGTEGAVSVEGTFAGIFASILLAWV 255 (264)
Q Consensus 193 ~l~fvas~Aaa~ADTwASEIG~ls~~~PrLITT~K~VppGTnGgVSllGtlAsllGs~lIa~v 255 (264)
-...++=++.+.+|+.||=+|+.+|++++-.-+-| |++|++|.++.++++..+
T Consensus 114 ~~~~~~I~~l~~GD~lAsiiG~~~G~~~~~~~~~K----------SleGSla~fi~~~l~~~~ 166 (216)
T COG0170 114 EVAIAGILVLALGDGLASIIGKRYGRHKRILGNGK----------SLEGSLAFFIASFLVLLV 166 (216)
T ss_pred HHHHHHHHHHHHhhHHHHHhCcccCccccccCCCC----------chhhhHHHHHHHHHHHHH
Confidence 45566677788999999999999999744444445 899999999999998753
No 6
>PF01148 CTP_transf_1: Cytidylyltransferase family; InterPro: IPR000374 Phosphatidate cytidylyltransferase (2.7.7.41 from EC) [, , ] (also known as CDP- diacylglycerol synthase) (CDS) is the enzyme that catalyzes the synthesis of CDP-diacylglycerol from CTP and phosphatidate (PA): CTP + phosphatidate = diphosphate + CDP-diacylglycerol CDP-diacylglycerol is an important branch point intermediate in both prokaryotic and eukaryotic organisms. CDS is a membrane-bound enzyme.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016020 membrane
Probab=93.46 E-value=0.14 Score=44.64 Aligned_cols=54 Identities=17% Similarity=0.363 Sum_probs=40.4
Q ss_pred HHHHHHHHhhcchhhhhhhcccCCCeeEeeCCccCCCCCCcccchhhHHHHHHHHHHHHHHHH
Q 024662 195 GFVASFCTKLSDTVSSEIGKAYGKTTYLVTTFKVVPRGTEGAVSVEGTFAGIFASILLAWVGC 257 (264)
Q Consensus 195 ~fvas~Aaa~ADTwASEIG~ls~~~PrLITT~K~VppGTnGgVSllGtlAsllGs~lIa~va~ 257 (264)
.+.+-...+.+|++|+=+|+.+||+.. |-.+..=|+||++++++++++++.+..
T Consensus 132 ~~~~i~~~~~gD~~A~l~G~~fGk~~~---------~~~sp~KT~EGsi~~~i~~~i~~~~~~ 185 (259)
T PF01148_consen 132 ALIGILILGIGDSFAYLVGRRFGKHLA---------PKISPKKTWEGSIAGFISSFIISFLLL 185 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcC---------CCCCCCCCHHHHhHHHHHHHHHHHHHH
Confidence 344556677899999999999999611 122333399999999999999877554
No 7
>COG0575 CdsA CDP-diglyceride synthetase [Lipid metabolism]
Probab=77.05 E-value=7.2 Score=35.83 Aligned_cols=56 Identities=18% Similarity=0.226 Sum_probs=43.1
Q ss_pred HHHHHHHHHhhcchhhhhhhcccCCCeeEeeCCccCCCCCCcccchhhHHHHHHHHHHHHHHHH
Q 024662 194 LGFVASFCTKLSDTVSSEIGKAYGKTTYLVTTFKVVPRGTEGAVSVEGTFAGIFASILLAWVGC 257 (264)
Q Consensus 194 l~fvas~Aaa~ADTwASEIG~ls~~~PrLITT~K~VppGTnGgVSllGtlAsllGs~lIa~va~ 257 (264)
..+...+..-.+|+.|+=+|+..|++| -.|-.|-.-|+||.+.|++++.+++....
T Consensus 135 ~~l~l~~~vw~~Di~Ayf~Gr~fGk~k--------l~p~iSP~KT~eGfigG~~~~~~v~~~~~ 190 (265)
T COG0575 135 LLLLLFLGVWAGDIGAYFVGRRFGKHK--------LAPKISPKKTWEGFIGGALGAVLVAVLVI 190 (265)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHcCCCC--------CCCcCCCCCchHHhHHHHHHHHHHHHHHH
Confidence 344455667779999999999999976 33456667899999999999988876533
No 8
>PF12188 STAT2_C: Signal transducer and activator of transcription 2 C terminal; InterPro: IPR022756 This region is found in the mammalian signal transducer and activation of transcription (STAT) 2 protein, and is approximately 60 amino acids in length. The family is found in association with PF02865 from PFAM, PF00017 from PFAM, PF01017 from PFAM, PF02864 from PFAM. There is a conserved DLP sequence motif. STATs are involved in transcriptional regulation and are the only regulators known to be modulated by tyrosine phosphorylation. STAT2 forms a trimeric complex with STAT1 and IRF-9 (Interferon Regulatory Factor 9), on activation of the cell by interferon, which is called ISGF3 (Interferon-stimulated gene factor 3). The C-terminal domain of STAT2 contains a nuclear export signal (NES) which allows export of STAT2 into the cytoplasm along with any complexed molecules. ; PDB: 2KA4_B.
Probab=58.47 E-value=4.3 Score=30.13 Aligned_cols=41 Identities=37% Similarity=0.506 Sum_probs=20.5
Q ss_pred CCCcccccccccCCCCCcccccccCC-CCCCCCCCCCCCccccc
Q 024662 11 PPVPALWFPHSLQKTPKFEFPIFRNP-NISNSTSNCNSSKMLLL 53 (264)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 53 (264)
-|+|.-=.||.||.--.-|.-||||+ +|..-+.| ..++..-
T Consensus 2 Q~~pEpDLP~DL~hlnteemeifrN~~~ieeImpn--gdPlLag 43 (56)
T PF12188_consen 2 QPVPEPDLPHDLQHLNTEEMEIFRNSMKIEEIMPN--GDPLLAG 43 (56)
T ss_dssp ---------HHHHTS--TGGGGGTTS--TTTSS-S--S-STTHH
T ss_pred CCCCCCCccHHHHHhChHHHHHHhccccHhhhccC--CCcccCC
Confidence 45666668999999999999999999 66655543 4455443
No 9
>PRK10484 putative transporter; Provisional
Probab=58.42 E-value=57 Score=32.56 Aligned_cols=26 Identities=8% Similarity=0.146 Sum_probs=20.9
Q ss_pred HHHhHhhcCCChHHHHHHHHHHHHHH
Q 024662 93 LGSPILVSGLSPSGIAAAFLLGTLTW 118 (264)
Q Consensus 93 ~~~~~~~k~LT~sGa~aA~lvG~l~~ 118 (264)
...++.-|..|..|++++.++|.+..
T Consensus 421 ~llgl~wkr~n~~ga~~g~i~G~~~~ 446 (523)
T PRK10484 421 IIVGFFTKRVPALAAKVALGFGIILY 446 (523)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHHH
Confidence 33556667899999999999998763
No 10
>PRK09395 actP acetate permease; Provisional
Probab=56.13 E-value=37 Score=34.20 Aligned_cols=25 Identities=20% Similarity=0.210 Sum_probs=20.3
Q ss_pred HHhHhhcCCChHHHHHHHHHHHHHH
Q 024662 94 GSPILVSGLSPSGIAAAFLLGTLTW 118 (264)
Q Consensus 94 ~~~~~~k~LT~sGa~aA~lvG~l~~ 118 (264)
..++.-|..|..|++++.++|.+..
T Consensus 450 llglfwkr~~~~gA~ag~i~G~~~~ 474 (551)
T PRK09395 450 LLSMYWKGLTTRGAVIGGWLGLISA 474 (551)
T ss_pred HHHHhcCCCchhhHHHHHHHHHHHH
Confidence 3566667899999999999998753
No 11
>KOG2468 consensus Dolichol kinase [Lipid transport and metabolism]
Probab=55.85 E-value=9.3 Score=39.02 Aligned_cols=54 Identities=30% Similarity=0.436 Sum_probs=40.5
Q ss_pred HHHHHHHHHHhhcchhhhhhhcccCCCeeEeeCCccCCCCCCcccchhhHHHHHHHHHHHHHHHH
Q 024662 193 QLGFVASFCTKLSDTVSSEIGKAYGKTTYLVTTFKVVPRGTEGAVSVEGTFAGIFASILLAWVGC 257 (264)
Q Consensus 193 ~l~fvas~Aaa~ADTwASEIG~ls~~~PrLITT~K~VppGTnGgVSllGtlAsllGs~lIa~va~ 257 (264)
+.-+.|-+|--.+||.||=+|+.+|+. .|+ || -=|+|||+|+++..++...+-.
T Consensus 410 l~~laGiLalGiGDTmASiiG~r~G~~-----RW~----~T--kKTlEGT~Afivs~~iv~~ll~ 463 (510)
T KOG2468|consen 410 LALLAGILALGIGDTMASIIGKRYGRI-----RWS----GT--KKTLEGTLAFIVSSFIVCLLLL 463 (510)
T ss_pred hhhhhhheeeccchHHHHHHhhhhcce-----ecC----CC--cceeehhhHHHHHHHHHHHHHH
Confidence 344666777788999999999999883 233 44 3489999999998887765433
No 12
>PRK12488 acetate permease; Provisional
Probab=54.39 E-value=59 Score=32.88 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=19.6
Q ss_pred HHhHhhcCCChHHHHHHHHHHHHH
Q 024662 94 GSPILVSGLSPSGIAAAFLLGTLT 117 (264)
Q Consensus 94 ~~~~~~k~LT~sGa~aA~lvG~l~ 117 (264)
..++.-|..|..|++++.++|.+.
T Consensus 448 llgl~wkr~t~~ga~ag~i~G~~~ 471 (549)
T PRK12488 448 FLSMFWKGLTTRGAVAGSYAGLVS 471 (549)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHH
Confidence 355666779999999999999764
No 13
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=50.28 E-value=15 Score=30.97 Aligned_cols=25 Identities=24% Similarity=0.538 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHhhchhHHHHHHHHHH
Q 024662 106 GIAAAFLLGTLTWRAFGPSGFLLVATYFI 134 (264)
Q Consensus 106 Ga~aA~lvG~l~~~~~G~~g~llLl~FFl 134 (264)
|+++++++|++ +|.-+.++|+.|++
T Consensus 64 ~~i~~Ii~gv~----aGvIg~Illi~y~i 88 (122)
T PF01102_consen 64 PAIIGIIFGVM----AGVIGIILLISYCI 88 (122)
T ss_dssp TCHHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred cceeehhHHHH----HHHHHHHHHHHHHH
Confidence 34555555544 23334455666665
No 14
>COG1585 Membrane protein implicated in regulation of membrane protease activity [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=49.67 E-value=51 Score=28.04 Aligned_cols=39 Identities=21% Similarity=0.111 Sum_probs=21.6
Q ss_pred CChHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhhhhhhcc
Q 024662 102 LSPSGIAAAFLLGTLTWRAFGPSGFLLVATYFIIGTAATKVK 143 (264)
Q Consensus 102 LT~sGa~aA~lvG~l~~~~~G~~g~llLl~FFlssS~~TK~k 143 (264)
|.--| .+|+.+| .+...++.+.+-+++|-++|-++.-+.
T Consensus 27 ll~~g-~aA~~vg--~~~l~~~~~~~q~v~f~~lsv~~~~l~ 65 (140)
T COG1585 27 LLWLG-LAALAVG--LALLLLLSWWLQLVLFAILSVLLALLG 65 (140)
T ss_pred HHHHH-HHHHHHH--HHHHccchHHHHHHHHHHHHHHHHHHH
Confidence 44455 6777888 333455555555555655555444333
No 15
>PF10031 DUF2273: Small integral membrane protein (DUF2273); InterPro: IPR018730 Members of this family of hypothetical bacterial proteins have no known function.
Probab=45.97 E-value=46 Score=23.95 Aligned_cols=40 Identities=23% Similarity=0.202 Sum_probs=28.1
Q ss_pred ChHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhhhhhhcc
Q 024662 103 SPSGIAAAFLLGTLTWRAFGPSGFLLVATYFIIGTAATKVK 143 (264)
Q Consensus 103 T~sGa~aA~lvG~l~~~~~G~~g~llLl~FFlssS~~TK~k 143 (264)
..-|++.++++|.+.. .+|....+.++++-.+|...-|+.
T Consensus 10 ~iiG~~~G~ila~l~l-~~GF~~tl~i~~~~~iG~~iG~~~ 49 (51)
T PF10031_consen 10 KIIGGLIGLILALLIL-TFGFWKTLFILLFAAIGYYIGKYL 49 (51)
T ss_pred hHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3458888889988775 567666666777777777665543
No 16
>COG3030 FxsA Protein affecting phage T7 exclusion by the F plasmid [General function prediction only]
Probab=45.10 E-value=87 Score=27.64 Aligned_cols=52 Identities=19% Similarity=0.199 Sum_probs=33.5
Q ss_pred HHHHHHHHHhhhhhhhcchhhhhhhhhhhhcCCccCcccccccchHHHHHHHH
Q 024662 126 FLLVATYFIIGTAATKVKMAQKEAQGVAEKRKGRRGPGSVIGSSAAGCVCAFL 178 (264)
Q Consensus 126 ~llLl~FFlssS~~TK~k~~~K~~l~~aekk~G~R~~~QVlaNg~va~l~All 178 (264)
.+++++.++.|-.+.|..--+--..-.++-+.| |.+.+-+.+|+.-.+.+++
T Consensus 33 l~Lvilt~~~G~~l~r~qG~~~l~~~q~~~~~G-~~P~~~ll~g~~~~vagiL 84 (158)
T COG3030 33 LLLVILTSVLGALLLRVQGFGTLLRAQAALASG-EVPGAELLDGLLLIIAGIL 84 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CCcHHHHHHhHHHHHHHHH
Confidence 445666778888877765544322223334556 9999999999776665554
No 17
>PF11166 DUF2951: Protein of unknown function (DUF2951); InterPro: IPR021337 This family of proteins has no known function. It has a highly conserved sequence.
Probab=43.26 E-value=29 Score=28.53 Aligned_cols=24 Identities=25% Similarity=0.434 Sum_probs=21.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHhcc
Q 024662 238 SVEGTFAGIFASILLAWVGCLTGQ 261 (264)
Q Consensus 238 SllGtlAsllGs~lIa~va~llg~ 261 (264)
=++|+++.++|+++||++=.++|+
T Consensus 75 wilGlvgTi~gsliia~lr~~fgi 98 (98)
T PF11166_consen 75 WILGLVGTIFGSLIIALLRTIFGI 98 (98)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCC
Confidence 378999999999999999888875
No 18
>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=40.27 E-value=53 Score=29.01 Aligned_cols=59 Identities=24% Similarity=0.395 Sum_probs=42.2
Q ss_pred cccccCCCC---CcccccccCCCCCCCCCCCCCCcccccccCCCcchHHHHHHHHHHHccccCc
Q 024662 18 FPHSLQKTP---KFEFPIFRNPNISNSTSNCNSSKMLLLHRANAAPSLQVAVSEAMNLVQLSQP 78 (264)
Q Consensus 18 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (264)
|||..--.| ||+.|.| .||.--|.+-|-|- +.--+-=-++.++.+.|.+.+++++..|+
T Consensus 64 F~~dyP~~PPkckF~~pl~-HPNVypsgtVcLsi-L~e~~~W~paitikqiL~gIqdLL~~Pn~ 125 (158)
T KOG0424|consen 64 FPDDYPSSPPKCKFKPPLF-HPNVYPSGTVCLSI-LNEEKDWRPAITIKQILLGIQDLLDTPNI 125 (158)
T ss_pred CCccCCCCCCccccCCCCc-CCCcCCCCcEehhh-hccccCCCchhhHHHHHHHHHHHhcCCCC
Confidence 666654443 5666766 79999999999762 11222246788899999999999988776
No 19
>PRK13592 ubiA prenyltransferase; Provisional
Probab=34.13 E-value=4.2e+02 Score=25.63 Aligned_cols=30 Identities=3% Similarity=-0.098 Sum_probs=16.8
Q ss_pred hhhhcchhhhhhhhhhhhcCCccCcccccc
Q 024662 138 AATKVKMAQKEAQGVAEKRKGRRGPGSVIG 167 (264)
Q Consensus 138 ~~TK~k~~~K~~l~~aekk~G~R~~~QVla 167 (264)
.+.-+.+|-=++.+++++|.+.|+..-.++
T Consensus 185 fl~~l~rEI~KdieD~gd~~~~~Tlpi~~G 214 (299)
T PRK13592 185 YFPSLIWEVCRKIRAPKDETEYVTYSKLFG 214 (299)
T ss_pred HHHHHHHHHHHhhcCCccccCCeeechhcc
Confidence 334445554333333455556888888887
No 20
>PF11014 DUF2852: Protein of unknown function (DUF2852); InterPro: IPR021273 This bacterial family of proteins has no known function.
Probab=33.61 E-value=96 Score=26.14 Aligned_cols=33 Identities=27% Similarity=0.474 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhhhhh
Q 024662 104 PSGIAAAFLLGTLTWRAFGPSGFLLVATYFIIGTAAT 140 (264)
Q Consensus 104 ~sGa~aA~lvG~l~~~~~G~~g~llLl~FFlssS~~T 140 (264)
....+++.++|+++|+-.| +.+++|-+-|-..-
T Consensus 8 ~~a~Ia~mVlGFi~fWPlG----la~Lay~iw~~rm~ 40 (115)
T PF11014_consen 8 KPAWIAAMVLGFIVFWPLG----LALLAYMIWGKRMF 40 (115)
T ss_pred chHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhh
Confidence 3567889999999874443 45666766664444
No 21
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=33.43 E-value=2.6e+02 Score=27.63 Aligned_cols=24 Identities=17% Similarity=0.346 Sum_probs=19.8
Q ss_pred HhHhhcCCChHHHHHHHHHHHHHH
Q 024662 95 SPILVSGLSPSGIAAAFLLGTLTW 118 (264)
Q Consensus 95 ~~~~~k~LT~sGa~aA~lvG~l~~ 118 (264)
.++.-|..|..|++++.++|.+..
T Consensus 411 lgl~w~r~t~~ga~~g~i~G~~~~ 434 (487)
T TIGR02121 411 FSLYWKRMTRNGALAGMIIGAVTV 434 (487)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHH
Confidence 455557799999999999998864
No 22
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=33.29 E-value=2.2e+02 Score=28.29 Aligned_cols=24 Identities=25% Similarity=0.448 Sum_probs=20.3
Q ss_pred HhHhhcCCChHHHHHHHHHHHHHH
Q 024662 95 SPILVSGLSPSGIAAAFLLGTLTW 118 (264)
Q Consensus 95 ~~~~~k~LT~sGa~aA~lvG~l~~ 118 (264)
.++.-|..|..|++++.++|.++.
T Consensus 418 lgl~wkr~t~~ga~~g~i~G~~~~ 441 (502)
T PRK15419 418 FSVMWSRMTRNGALAGMIIGALTV 441 (502)
T ss_pred HHHHcCCCcHHHHHHHHHHHHHHH
Confidence 566678899999999999998864
No 23
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=32.67 E-value=2.6e+02 Score=26.07 Aligned_cols=26 Identities=12% Similarity=0.156 Sum_probs=15.9
Q ss_pred HHHHHHHHHHccccCchhHHHHHHHHH
Q 024662 63 QVAVSEAMNLVQLSQPTWQSALLSNVV 89 (264)
Q Consensus 63 ~~~~~~~~~~~~~~~~~w~~a~~~n~~ 89 (264)
.+-+.+|...-...+| |+..+++...
T Consensus 10 ~~Qi~q~y~~trk~dp-~l~~~ml~a~ 35 (224)
T PF13829_consen 10 RKQIWQAYKMTRKEDP-KLPWLMLGAF 35 (224)
T ss_pred HHHHHHHHHHHHHHCc-chHHHHHHHH
Confidence 4456666666667777 5555555443
No 24
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=32.58 E-value=1.5e+02 Score=29.80 Aligned_cols=25 Identities=20% Similarity=0.081 Sum_probs=20.9
Q ss_pred HHhHhhcCCChHHHHHHHHHHHHHH
Q 024662 94 GSPILVSGLSPSGIAAAFLLGTLTW 118 (264)
Q Consensus 94 ~~~~~~k~LT~sGa~aA~lvG~l~~ 118 (264)
..++.-|..|..|++++.++|.+.+
T Consensus 458 llgl~w~r~~~~ga~~g~i~G~~~~ 482 (552)
T TIGR03648 458 VLGIFWKRMNREGAIAGMLTGLGFT 482 (552)
T ss_pred HHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 4566677899999999999998864
No 25
>PF11992 DUF3488: Domain of unknown function (DUF3488); InterPro: IPR021878 This presumed domain is functionally uncharacterised. This domain is found in bacteria. This domain is typically between 323 to 339 amino acids in length. This domain is found associated with PF01841 from PFAM. This domain has a conserved PLW sequence motif. This domain contains 6 transmembrane helices.
Probab=31.97 E-value=4.4e+02 Score=24.86 Aligned_cols=18 Identities=11% Similarity=-0.160 Sum_probs=12.2
Q ss_pred CccCcccccccchHHHHH
Q 024662 158 GRRGPGSVIGSSAAGCVC 175 (264)
Q Consensus 158 G~R~~~QVlaNg~va~l~ 175 (264)
.+||..|++.=+..-+++
T Consensus 98 ~~RD~~~l~~l~~fl~~~ 115 (325)
T PF11992_consen 98 TRRDYYQLLLLGLFLLAA 115 (325)
T ss_pred ccccHHHHHHHHHHHHHH
Confidence 479999998666544333
No 26
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=31.40 E-value=1.5e+02 Score=30.10 Aligned_cols=24 Identities=25% Similarity=0.194 Sum_probs=19.7
Q ss_pred HHhHhhcCCChHHHHHHHHHHHHH
Q 024662 94 GSPILVSGLSPSGIAAAFLLGTLT 117 (264)
Q Consensus 94 ~~~~~~k~LT~sGa~aA~lvG~l~ 117 (264)
..++.-|..|..|++++.++|.+.
T Consensus 448 llgl~Wkr~n~~GA~ag~i~G~~~ 471 (549)
T TIGR02711 448 LLSMYWSKLTTRGAMIGGWLGLIT 471 (549)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHH
Confidence 355666789999999999999765
No 27
>KOG2881 consensus Predicted membrane protein [Function unknown]
Probab=30.22 E-value=1.3e+02 Score=29.10 Aligned_cols=61 Identities=23% Similarity=0.178 Sum_probs=39.5
Q ss_pred cCchhHHHHHHHHHHHHHHHhHh-hcCCChHHHHHHHHHHHHHHHhhchhH----------HHHHHHHHHhhhhhhhcch
Q 024662 76 SQPTWQSALLSNVVIFVLGSPIL-VSGLSPSGIAAAFLLGTLTWRAFGPSG----------FLLVATYFIIGTAATKVKM 144 (264)
Q Consensus 76 ~~~~w~~a~~~n~~l~~~~~~~~-~k~LT~sGa~aA~lvG~l~~~~~G~~g----------~llLl~FFlssS~~TK~k~ 144 (264)
.|-+|.+|.++ ++| .|.+-.+|+..|..+-++.-..+||.. ++.-.+|++.|-+..|-++
T Consensus 82 GDKTFfiAAlm---------Amr~~R~~Vf~Ga~~AL~lMTiLS~~lG~aap~lipr~~T~~~~t~LF~iFGlkmL~eg~ 152 (294)
T KOG2881|consen 82 GDKTFFIAALM---------AMRYPRLTVFSGAMSALALMTILSVLLGWAAPNLIPRKYTYYLATALFLIFGLKMLKEGW 152 (294)
T ss_pred cchHHHHHHHH---------HhhccchhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34477666543 333 445567999999999998777788854 2344556666766666654
Q ss_pred h
Q 024662 145 A 145 (264)
Q Consensus 145 ~ 145 (264)
+
T Consensus 153 ~ 153 (294)
T KOG2881|consen 153 E 153 (294)
T ss_pred c
Confidence 3
No 28
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.83 E-value=1.1e+02 Score=25.84 Aligned_cols=57 Identities=25% Similarity=0.313 Sum_probs=28.6
Q ss_pred hHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhhhhhhcchhhh----hhhhhhhhcCCccC
Q 024662 104 PSGIAAAFLLGTLTWRAFGPSGFLLVATYFIIGTAATKVKMAQK----EAQGVAEKRKGRRG 161 (264)
Q Consensus 104 ~sGa~aA~lvG~l~~~~~G~~g~llLl~FFlssS~~TK~k~~~K----~~l~~aekk~G~R~ 161 (264)
.+|.+.+..+|+++=.++|...|. |++|.++|-.+--..-.|| ++.+..++.+|.+|
T Consensus 53 IsGilVGa~iG~llD~~agTsPwg-lIv~lllGf~AG~lnv~Rsag~va~~~~~~~~s~~~d 113 (116)
T COG5336 53 ISGILVGAGIGWLLDKFAGTSPWG-LIVFLLLGFGAGVLNVLRSAGKVAEQGQAPKSSGNDD 113 (116)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcHH-HHHHHHHHHHHHHHHHHHHhccccccccCCCCCcccc
Confidence 356677777777764445554332 2345555544433333333 33344444455544
No 29
>COG4854 Predicted membrane protein [Function unknown]
Probab=27.30 E-value=3.1e+02 Score=23.45 Aligned_cols=67 Identities=24% Similarity=0.177 Sum_probs=36.4
Q ss_pred hHHHHHHHHHHHHHHHhh-chhHHHHHHHHHHhhhhhhhcchhhhhhhhhh-----hhcCCccCcccccccchH
Q 024662 104 PSGIAAAFLLGTLTWRAF-GPSGFLLVATYFIIGTAATKVKMAQKEAQGVA-----EKRKGRRGPGSVIGSSAA 171 (264)
Q Consensus 104 ~sGa~aA~lvG~l~~~~~-G~~g~llLl~FFlssS~~TK~k~~~K~~l~~a-----ekk~G~R~~~QVlaNg~v 171 (264)
.-+.....++|..+=+.. ...|++.++.||.---.++-+|.+-.+-.+++ .++..+|+ .||+.-|..
T Consensus 9 ~~l~~ivm~~GA~~g~a~~sGn~~iav~af~ag~~~l~l~k~Rv~~vvEDER~lrvse~aSr~T-iqV~~is~A 81 (126)
T COG4854 9 KILFAIVMAVGAAVGYAVESGNWFIAVIAFFAGAALLSLVKRRVDEVVEDERTLRVSERASRRT-IQVFSISAA 81 (126)
T ss_pred HHHHHHHHHHHHHHheeecCCCeehHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhee-EEEEEehHH
Confidence 344444555555431111 22357788888766666666666544333332 12445565 699987743
No 30
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=27.18 E-value=2.6e+02 Score=30.01 Aligned_cols=63 Identities=24% Similarity=0.340 Sum_probs=34.6
Q ss_pred hhHHHHHHHHHHHHHH----HhHhhcCCC------------hHHHHHHHHH-HHHHHHhhchhHHHHHHHHHHhhhhhhh
Q 024662 79 TWQSALLSNVVIFVLG----SPILVSGLS------------PSGIAAAFLL-GTLTWRAFGPSGFLLVATYFIIGTAATK 141 (264)
Q Consensus 79 ~w~~a~~~n~~l~~~~----~~~~~k~LT------------~sGa~aA~lv-G~l~~~~~G~~g~llLl~FFlssS~~TK 141 (264)
+|.+++++-+++++.. .++...-+- .++.-+=+++ |+.....+.|.-.++.+++|+.|...-+
T Consensus 413 R~~~~lil~~~llLIv~~~~lGLl~G~~G~~~~~~p~~r~c~~~tGg~~Lm~gv~~~Flf~~~l~l~~~~~Fl~G~~~~~ 492 (806)
T PF05478_consen 413 RWIVGLILCCVLLLIVLCLLLGLLCGCCGYRRRADPTDRGCSSNTGGNFLMAGVGLSFLFSWFLMLLVLFYFLVGGNTYT 492 (806)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCcccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhe
Confidence 8999888776655443 333222221 1222222222 2223334666666777889999998744
No 31
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=25.72 E-value=2.5e+02 Score=23.93 Aligned_cols=15 Identities=7% Similarity=0.284 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHh
Q 024662 82 SALLSNVVIFVLGSP 96 (264)
Q Consensus 82 ~a~~~n~~l~~~~~~ 96 (264)
++++++.++++.++.
T Consensus 10 ~~iilgilli~~gI~ 24 (191)
T PF04156_consen 10 ILIILGILLIASGIA 24 (191)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344455554444433
No 32
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=25.48 E-value=3.2e+02 Score=26.85 Aligned_cols=25 Identities=12% Similarity=0.280 Sum_probs=20.3
Q ss_pred HHhHhhcCCChHHHHHHHHHHHHHH
Q 024662 94 GSPILVSGLSPSGIAAAFLLGTLTW 118 (264)
Q Consensus 94 ~~~~~~k~LT~sGa~aA~lvG~l~~ 118 (264)
..++.-|..|..|++++.++|.+++
T Consensus 412 ~lgl~w~r~~~~ga~~~~i~G~~~~ 436 (483)
T PRK09442 412 VLGLYWERANATGALASMIVGLVSY 436 (483)
T ss_pred HHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 3555567789999999999998864
No 33
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=25.21 E-value=2.9e+02 Score=26.98 Aligned_cols=25 Identities=12% Similarity=0.214 Sum_probs=20.5
Q ss_pred HHhHhhcCCChHHHHHHHHHHHHHH
Q 024662 94 GSPILVSGLSPSGIAAAFLLGTLTW 118 (264)
Q Consensus 94 ~~~~~~k~LT~sGa~aA~lvG~l~~ 118 (264)
..++.-|..|..|++++.++|.+.+
T Consensus 410 llgl~w~r~t~~ga~~~~i~G~~~~ 434 (471)
T TIGR02119 410 VLGLYWKRANATGALASMIVGVGSY 434 (471)
T ss_pred HHHHhcCcCcHHHHHHHHHHHHHHH
Confidence 3555568899999999999998875
No 34
>PF08570 DUF1761: Protein of unknown function (DUF1761); InterPro: IPR013879 This entry shows conserved fungal proteins with unknown function.
Probab=25.16 E-value=3.7e+02 Score=21.67 Aligned_cols=14 Identities=21% Similarity=0.199 Sum_probs=7.7
Q ss_pred chhhhhhhhhhhhc
Q 024662 143 KMAQKEAQGVAEKR 156 (264)
Q Consensus 143 k~~~K~~l~~aekk 156 (264)
+++..|+.+..+++
T Consensus 24 g~~W~~~~g~~~~~ 37 (126)
T PF08570_consen 24 GKAWMRAMGITPED 37 (126)
T ss_pred HHHHHHHcCCCccc
Confidence 66656666554433
No 35
>PRK09459 pspG phage shock protein G; Reviewed
Probab=24.71 E-value=67 Score=25.34 Aligned_cols=26 Identities=19% Similarity=0.354 Sum_probs=20.0
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHhcc
Q 024662 236 AVSVEGTFAGIFASILLAWVGCLTGQ 261 (264)
Q Consensus 236 gVSllGtlAsllGs~lIa~va~llg~ 261 (264)
|||++|.+++++-++.+-+++-.+++
T Consensus 18 GiSllgv~aAl~va~~vM~l~Gm~~l 43 (76)
T PRK09459 18 GISLLGIIAALGVATLVMFLGGMFAL 43 (76)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999888777666555543
No 36
>PLN02594 phosphatidate cytidylyltransferase
Probab=24.36 E-value=1.3e+02 Score=29.62 Aligned_cols=49 Identities=14% Similarity=0.225 Sum_probs=36.7
Q ss_pred HHHHhhcchhhhhhhcccCCCeeEeeCCccCCCCCCcccchhhHHHHHHHHHHHHHHH
Q 024662 199 SFCTKLSDTVSSEIGKAYGKTTYLVTTFKVVPRGTEGAVSVEGTFAGIFASILLAWVG 256 (264)
Q Consensus 199 s~Aaa~ADTwASEIG~ls~~~PrLITT~K~VppGTnGgVSllGtlAsllGs~lIa~va 256 (264)
....-+.||+|==.|+..||+|. + . +.|. =|+||.+.|++++++++.+.
T Consensus 131 ~~lV~~nDi~AY~~G~~fGk~kL-~-~---iSPk----KTwEGfiGg~i~T~i~~~~~ 179 (342)
T PLN02594 131 ASLIVINDIAAYLFGFFFGRTPL-I-K---LSPK----KTWEGFIGASVTTLISAFYL 179 (342)
T ss_pred HHHHHHHhHHHHHHHHHhcCCCC-C-c---cCCC----CchhhhHHHHHHHHHHHHHH
Confidence 44567799999999999999874 3 2 2222 27899999999888887654
No 37
>PRK14416 membrane protein; Provisional
Probab=22.71 E-value=5.2e+02 Score=23.53 Aligned_cols=25 Identities=24% Similarity=0.275 Sum_probs=18.2
Q ss_pred HhHhhcCCChHHHHHHHHHHHHHHH
Q 024662 95 SPILVSGLSPSGIAAAFLLGTLTWR 119 (264)
Q Consensus 95 ~~~~~k~LT~sGa~aA~lvG~l~~~ 119 (264)
.-+..|..+.+..+++..+-...|.
T Consensus 126 ~~~itr~vSL~Si~a~~~~p~~~~~ 150 (200)
T PRK14416 126 PLALTRNIALATGIALFSLPFLVWY 150 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355677888888888887776664
No 38
>PF00950 ABC-3: ABC 3 transport family; InterPro: IPR001626 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 3 of ABC transporters.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016020 membrane
Probab=22.51 E-value=2.5e+02 Score=25.82 Aligned_cols=53 Identities=13% Similarity=0.066 Sum_probs=32.9
Q ss_pred HhHhhcCCChHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhh-hhhhcchhhh
Q 024662 95 SPILVSGLSPSGIAAAFLLGTLTWRAFGPSGFLLVATYFIIGT-AATKVKMAQK 147 (264)
Q Consensus 95 ~~~~~k~LT~sGa~aA~lvG~l~~~~~G~~g~llLl~FFlssS-~~TK~k~~~K 147 (264)
.-+|+.++--.+.-|+.+.|...-..+|+...+-.+.|-+... ...+++++.|
T Consensus 26 vv~Rr~~f~~~alsH~al~Gvala~~l~~~~~~ga~~~~ll~a~~i~~l~~~~~ 79 (257)
T PF00950_consen 26 VVLRRMSFLGDALSHAALAGVALALLLGISPLLGAIIFALLAALLIGFLSRRSK 79 (257)
T ss_pred HHHhhHHHhhhhHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4577788888888899998887766677765443333433333 3444444433
No 39
>cd06550 TM_ABC_iron-siderophores_like Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters involved in the uptake of siderophores, heme, vitamin B12, or the divalent cations Mg2+ and Zn2+. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The TMs are bundles of alpha helices that transverse the cytoplasmic membrane multiple times. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Each TM has a prominent cytoplasmic loop which contacts an ABC and represents a conserved motif. The two TMs form either a homodimer (e.g. in the case of the BtuC subunits of the Escherichia coli BtuCD vitamin B12 transporter), a heterodimer (e.g. the TroC and TroD subunits of the Treponema pallidum general transition metal
Probab=22.24 E-value=3.7e+02 Score=24.13 Aligned_cols=44 Identities=20% Similarity=0.089 Sum_probs=24.2
Q ss_pred hHHHHHHHHHHHHHH--HhHhhcCCChHHHHHHHHHHHHHHHhhch
Q 024662 80 WQSALLSNVVIFVLG--SPILVSGLSPSGIAAAFLLGTLTWRAFGP 123 (264)
Q Consensus 80 w~~a~~~n~~l~~~~--~~~~~k~LT~sGa~aA~lvG~l~~~~~G~ 123 (264)
++.++++.....+.. .-.|+.+....|.-++.+.|......+++
T Consensus 5 ~l~g~~l~~~~~~lg~~~~~r~~s~~~~gi~h~a~~g~~l~~~~~~ 50 (261)
T cd06550 5 LLVGAALAVSGAILQSLTRNRLASPSILGISHGALLGVVLALLLGI 50 (261)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCcHhHHHHHHHHHHHHHHHHHH
Confidence 344444444444444 33445555667777777777665444444
No 40
>PF12301 CD99L2: CD99 antigen like protein 2; InterPro: IPR022078 This family of proteins is found in eukaryotes. Proteins in this family are typically between 165 and 237 amino acids in length. CD99L2 and CD99 are involved in trans-endothelial migration of neutrophils in vitro and in the recruitment of neutrophils into inflamed peritoneum.
Probab=21.59 E-value=76 Score=28.16 Aligned_cols=30 Identities=30% Similarity=0.589 Sum_probs=23.0
Q ss_pred CCCcccchhhHHHHHHHHHHHHHHHHHhcc
Q 024662 232 GTEGAVSVEGTFAGIFASILLAWVGCLTGQ 261 (264)
Q Consensus 232 GTnGgVSllGtlAsllGs~lIa~va~llg~ 261 (264)
|-+.+-...|++|++++++.|++++.....
T Consensus 106 ~~~~~~~~~g~IaGIvsav~valvGAvsSy 135 (169)
T PF12301_consen 106 GNQDGEAEAGTIAGIVSAVVVALVGAVSSY 135 (169)
T ss_pred CCcccCcccchhhhHHHHHHHHHHHHHHHH
Confidence 445567788999999999999988765443
No 41
>TIGR00023 acyl-phosphate glycerol 3-phosphate acyltransferase. This model represents the full length of acylphosphate:glycerol 3-phosphate acyltransferase, and integral membrane protein about 200 amino acids in length, called PlsY in Streptococcus pneumoniae, YneS in Bacillus subtilis, and YgiH in E. coli. It is found in a single copy in a large number of bacteria, including the Mycoplasmas but not Mycobacteria or spirochetes, for example. Its partner is PlsX (see TIGR00182), and the pair can replace PlsB for synthesizing 1-acylglycerol-3-phosphate.
Probab=21.54 E-value=5.1e+02 Score=23.27 Aligned_cols=58 Identities=14% Similarity=0.165 Sum_probs=29.3
Q ss_pred HhhcCCChHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhhhhhhcchhhhhhhhhhhhc
Q 024662 97 ILVSGLSPSGIAAAFLLGTLTWRAFGPSGFLLVATYFIIGTAATKVKMAQKEAQGVAEKR 156 (264)
Q Consensus 97 ~~~k~LT~sGa~aA~lvG~l~~~~~G~~g~llLl~FFlssS~~TK~k~~~K~~l~~aekk 156 (264)
+..|..+.+..+++..+-...+. .+.. ...+....+..-.+-|.+.+.|+-+.-+|+|
T Consensus 135 ~~tr~vSl~Si~~~~~~~~~~~~-~~~~-~~~~~~~~~~~lii~rHr~NI~Rl~~g~E~k 192 (196)
T TIGR00023 135 LVTKYVSLSSIVTAIVLPFYVLW-FHLP-YLYIPVTLLLIFVIYRHRANIQRLLNGTEPK 192 (196)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHH-Hhhh-HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 44567888877776666655543 2221 1112222233334556666666655444444
No 42
>PRK14402 membrane protein; Provisional
Probab=21.20 E-value=3.6e+02 Score=24.39 Aligned_cols=59 Identities=15% Similarity=0.150 Sum_probs=30.2
Q ss_pred HhhcCCChHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhhhhhhcchhhhhhhhhhhhc
Q 024662 97 ILVSGLSPSGIAAAFLLGTLTWRAFGPSGFLLVATYFIIGTAATKVKMAQKEAQGVAEKR 156 (264)
Q Consensus 97 ~~~k~LT~sGa~aA~lvG~l~~~~~G~~g~llLl~FFlssS~~TK~k~~~K~~l~~aekk 156 (264)
+..|..+.+..+++..+-...+. ++-+.+..+....+..-..-|.+...|+-+.-.|+|
T Consensus 134 ~itr~vSl~Si~a~~~~~~~~~~-~~~~~~~~~~~~~la~lii~rHr~NI~Rl~~g~E~k 192 (198)
T PRK14402 134 WLTRFVSAGSMIGAVTAGVLALA-LGRPLWEVATVVLLAALLFWTHRENIRRLQAGTERR 192 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HhcchHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCc
Confidence 44567788877777666555442 221111122222233445567766666655444444
No 43
>PF07019 Rab5ip: Rab5-interacting protein (Rab5ip)
Probab=21.17 E-value=2e+02 Score=21.67 Aligned_cols=14 Identities=14% Similarity=0.230 Sum_probs=7.2
Q ss_pred CcccccccchHHHH
Q 024662 161 GPGSVIGSSAAGCV 174 (264)
Q Consensus 161 ~~~QVlaNg~va~l 174 (264)
++.+++-.+....+
T Consensus 57 ~~~~i~~~g~~~~l 70 (81)
T PF07019_consen 57 GPWEIFTEGFFSGL 70 (81)
T ss_pred CHHHHHHhhhhchH
Confidence 44566655544443
No 44
>PLN02953 phosphatidate cytidylyltransferase
Probab=21.17 E-value=8.7e+02 Score=24.61 Aligned_cols=50 Identities=26% Similarity=0.321 Sum_probs=36.3
Q ss_pred HHHHHhhcchhhhhhhcccCCCeeEeeCCccCCCCCCcccchhhHHHHHHHHHHHHHHH
Q 024662 198 ASFCTKLSDTVSSEIGKAYGKTTYLVTTFKVVPRGTEGAVSVEGTFAGIFASILLAWVG 256 (264)
Q Consensus 198 as~Aaa~ADTwASEIG~ls~~~PrLITT~K~VppGTnGgVSllGtlAsllGs~lIa~va 256 (264)
.-.+.-.+||.|==.|+..||++.. ++.| .=|++|.+.|++++++++.+.
T Consensus 274 ~~~~vw~~Di~AY~~G~~fGk~kl~-----~ISP----kKTwEG~iGGil~~vlv~~l~ 323 (403)
T PLN02953 274 SFSGVIATDTFAFLGGKAFGRTPLT-----SISP----KKTWEGTFVGLVGCIAITILL 323 (403)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCC-----cCCC----CCeeeeehhHHHHHHHHHHHH
Confidence 3344566899999999999986531 3333 358888888888888877543
No 45
>COG3167 PilO Tfp pilus assembly protein PilO [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=21.15 E-value=53 Score=30.24 Aligned_cols=32 Identities=19% Similarity=0.403 Sum_probs=23.5
Q ss_pred hhhhhhhcccCCCeeEee----CCccCCCCCCcccchhhH
Q 024662 207 TVSSEIGKAYGKTTYLVT----TFKVVPRGTEGAVSVEGT 242 (264)
Q Consensus 207 TwASEIG~ls~~~PrLIT----T~K~VppGTnGgVSllGt 242 (264)
+++|.++.| ||.|| .+|+|++|++|-.-+.++
T Consensus 152 ~F~~~VasL----pRIiTl~d~~i~~~~~~~ss~L~ls~~ 187 (211)
T COG3167 152 QFVSDVASL----PRIITLHDLKIKPVPEGKSSILNLSAR 187 (211)
T ss_pred HHHHHHhhc----ceeeeeecceeccCCCCCcceEEeeeh
Confidence 466778888 67666 378999999987655543
No 46
>PRK14400 membrane protein; Provisional
Probab=20.84 E-value=3.4e+02 Score=24.59 Aligned_cols=56 Identities=13% Similarity=-0.034 Sum_probs=27.7
Q ss_pred hHhhcCCChHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhhhhhhcchhhhhhhh
Q 024662 96 PILVSGLSPSGIAAAFLLGTLTWRAFGPSGFLLVATYFIIGTAATKVKMAQKEAQG 151 (264)
Q Consensus 96 ~~~~k~LT~sGa~aA~lvG~l~~~~~G~~g~llLl~FFlssS~~TK~k~~~K~~l~ 151 (264)
-+..|..+.+..+++..+....+...+.+........++..-..-|.+...|+-+.
T Consensus 140 ~~itr~vSL~Si~a~~~~~i~~~~~~~~~~~~~~~~~~~~~lii~rHr~NI~Rl~~ 195 (201)
T PRK14400 140 YGLTRISSVGSLTGTALCVAGGFATYGPRHPVSWAGLAIALLIFVRHRENIRRLVR 195 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34567788888888777766544322221011111122233344555555555443
No 47
>PRK14405 membrane protein; Provisional
Probab=20.69 E-value=4.6e+02 Score=23.66 Aligned_cols=59 Identities=12% Similarity=-0.004 Sum_probs=30.1
Q ss_pred HhhcCCChHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhhhhhhcchhhhhhhhhhhhc
Q 024662 97 ILVSGLSPSGIAAAFLLGTLTWRAFGPSGFLLVATYFIIGTAATKVKMAQKEAQGVAEKR 156 (264)
Q Consensus 97 ~~~k~LT~sGa~aA~lvG~l~~~~~G~~g~llLl~FFlssS~~TK~k~~~K~~l~~aekk 156 (264)
...|..+.+..+++..+-...+. .+......+....+..-..-|.+.+.|+-+.-.|+|
T Consensus 136 ~itr~vSl~si~~~~~~~~~~~~-~~~~~~~~~~~~~l~~lvi~rHr~NI~rl~~g~E~k 194 (202)
T PRK14405 136 VITRYVSLGSLLFVTLTPVLLYI-FDYPIPYIWLSLIIAIFAFWRHRTNIVRLLSGTENK 194 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HhcchHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCc
Confidence 34577888877777666555443 222111112222233345556666666655444544
No 48
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=20.24 E-value=1.5e+02 Score=25.25 Aligned_cols=58 Identities=22% Similarity=0.457 Sum_probs=38.0
Q ss_pred cccccc-CCCCCccc--ccccCCCCCCCCCCCCCCcccccccCCCcchHHHHHHHHHHHccccCc
Q 024662 17 WFPHSL-QKTPKFEF--PIFRNPNISNSTSNCNSSKMLLLHRANAAPSLQVAVSEAMNLVQLSQP 78 (264)
Q Consensus 17 ~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (264)
.||+.. .+-|++.| +|| +|||++...-|-+- +-.+=.++-++++.|...+.++...++
T Consensus 56 ~~p~~YP~~pP~v~F~t~i~-HPNV~~~G~iCl~i---L~~~W~p~~ti~~iL~~i~~ll~~P~~ 116 (152)
T PTZ00390 56 FLPEQYPMEPPKVRFLTKIY-HPNIDKLGRICLDI---LKDKWSPALQIRTVLLSIQALLSAPEP 116 (152)
T ss_pred ECccccCCCCCEEEEecCCe-eceECCCCeEECcc---CcccCCCCCcHHHHHHHHHHHHhCCCC
Confidence 344443 34565444 676 79999877788641 113445667889999888888876665
No 49
>COG1296 AzlC Predicted branched-chain amino acid permease (azaleucine resistance) [Amino acid transport and metabolism]
Probab=20.19 E-value=7.1e+02 Score=23.15 Aligned_cols=44 Identities=18% Similarity=0.199 Sum_probs=31.9
Q ss_pred hhHHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHhhc
Q 024662 79 TWQSALLSNVVIFVLGSPILVSGLSPSGIAAAFLLGTLTWRAFG 122 (264)
Q Consensus 79 ~w~~a~~~n~~l~~~~~~~~~k~LT~sGa~aA~lvG~l~~~~~G 122 (264)
+|...+++....+++..+-+++.-+..-.+++.+...+.+..++
T Consensus 166 ~~GldFal~a~Fi~L~~~~~k~~~~~~~~~~~~~~a~~~~~l~~ 209 (238)
T COG1296 166 TIGLDFALPALFIVLVIPQFKRRKTLLSVLASLVLALVALVLFG 209 (238)
T ss_pred hhhHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHh
Confidence 79999999888777778877776666666666666666554454
No 50
>COG2155 Uncharacterized conserved protein [Function unknown]
Probab=20.12 E-value=61 Score=25.73 Aligned_cols=34 Identities=38% Similarity=0.686 Sum_probs=19.7
Q ss_pred HHHHHHHHHhhchhHHHHHHHHHHhhhhhhhcch
Q 024662 111 FLLGTLTWRAFGPSGFLLVATYFIIGTAATKVKM 144 (264)
Q Consensus 111 ~lvG~l~~~~~G~~g~llLl~FFlssS~~TK~k~ 144 (264)
.++|.+.|+..|..+|=++-.-|..+|.+||+-|
T Consensus 14 vIiGalNWGLvG~f~fdLvaalfG~gs~lsri~Y 47 (79)
T COG2155 14 VILGALNWGLVGLFGFDLVAALFGVGSMLTRIIY 47 (79)
T ss_pred HHHhhhhhceeeeehhhHHHHHHcCchHHHHHHH
Confidence 3455666655555555555555666666666544
Done!