Query 024662
Match_columns 264
No_of_seqs 161 out of 418
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 12:14:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024662.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024662hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dh4_A Sodium/glucose cotransp 89.0 0.88 3E-05 43.8 7.4 58 94-151 414-483 (530)
2 2xq2_A Sodium/glucose cotransp 82.0 5.4 0.00019 38.8 9.2 51 95-145 444-506 (593)
3 2ka4_B P113, signal transducer 70.1 2.6 8.7E-05 30.3 2.3 35 10-44 2-37 (57)
4 3r3q_A Suppressor protein STP2 39.7 15 0.0005 30.9 2.3 60 15-78 86-159 (162)
5 2k1k_A Ephrin type-A receptor 35.8 69 0.0024 20.8 4.7 17 100-117 6-22 (38)
6 2aak_A UBC1, ubiquitin conjuga 27.7 80 0.0027 25.2 4.8 59 16-78 57-118 (152)
7 1ayz_A UBC2, ubiquitin-conjuga 25.2 91 0.0031 25.7 4.8 57 18-78 59-118 (169)
8 1kvd_A SMK toxin; halotolerant 25.2 28 0.00097 24.8 1.4 33 229-261 15-47 (63)
9 2l34_A TYRO protein tyrosine k 24.9 89 0.003 19.8 3.6 14 105-118 6-19 (33)
10 1jat_B Ubiquitin-conjugating e 24.3 55 0.0019 25.9 3.2 52 24-77 72-125 (138)
11 2e2c_A Ubiquitin conjugating e 24.0 93 0.0032 25.0 4.6 58 17-78 63-123 (156)
12 2c4o_A Ubiquitin-conjugating e 23.4 91 0.0031 25.5 4.5 59 16-78 72-133 (165)
13 1z2u_A Ubiquitin-conjugating e 23.0 96 0.0033 24.7 4.5 58 17-78 58-118 (150)
14 1c4z_D UBCH7, ubiquitin conjug 22.7 1.2E+02 0.004 24.3 4.9 48 28-78 70-117 (154)
15 1wzv_A Ubiquitin-conjugating e 21.9 1.1E+02 0.0036 24.6 4.5 59 17-78 58-119 (155)
16 3rz3_A Ubiquitin-conjugating e 20.8 1.3E+02 0.0044 25.0 5.0 50 28-78 76-135 (183)
No 1
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=89.02 E-value=0.88 Score=43.79 Aligned_cols=58 Identities=5% Similarity=-0.027 Sum_probs=37.0
Q ss_pred HHhHhhcCCChHHHHHHHHHHHHHHHhh-----ch-------hHHHHHHHHHHhhhhhhhcchhhhhhhh
Q 024662 94 GSPILVSGLSPSGIAAAFLLGTLTWRAF-----GP-------SGFLLVATYFIIGTAATKVKMAQKEAQG 151 (264)
Q Consensus 94 ~~~~~~k~LT~sGa~aA~lvG~l~~~~~-----G~-------~g~llLl~FFlssS~~TK~k~~~K~~l~ 151 (264)
..++.-|..|..|++++.++|.+++... .+ .++++-+..++..|++||-+.+++++.+
T Consensus 414 llgl~wkr~~~~gA~~g~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~vSl~t~~~~~~~~~~~ 483 (530)
T 3dh4_A 414 LLGLFWKKTTSKGAIIGVVASIPFALFLKFMPLSMPFMDQMLYTLLFTMVVIAFTSLSTSINDDDPKGIS 483 (530)
T ss_dssp HHHHHCTTCCHHHHHHHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHHHHHHHTTCSSSSCTTCCC
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccc
Confidence 3556667899999999999998764321 11 1233334456677888876666554433
No 2
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=82.01 E-value=5.4 Score=38.80 Aligned_cols=51 Identities=6% Similarity=-0.016 Sum_probs=32.3
Q ss_pred HhHhhcCCChHHHHHHHHHHHHHHHhhc-----h-------hHHHHHHHHHHhhhhhhhcchh
Q 024662 95 SPILVSGLSPSGIAAAFLLGTLTWRAFG-----P-------SGFLLVATYFIIGTAATKVKMA 145 (264)
Q Consensus 95 ~~~~~k~LT~sGa~aA~lvG~l~~~~~G-----~-------~g~llLl~FFlssS~~TK~k~~ 145 (264)
.++.-|..|..|++++.++|.+++...- . .++.+-+..++..|++||-+.+
T Consensus 444 lglfwkr~~~~gA~~g~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~v~vSl~t~~~~~ 506 (593)
T 2xq2_A 444 LGLFWKKTTSKGAIIGVVASIPFALFLKFMPLSMPFMDQMLYTLLFTMVVIAFTSLSTSINDD 506 (593)
T ss_dssp HHHHCTTCCHHHHHHHHHHHHHHHHHHHHSSCCCCHHHHHHHHHHHHHHHHHHHHHHHCSSSS
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHhheeecCCCch
Confidence 4555677999999999999988653221 1 1122223345677888875444
No 3
>2ka4_B P113, signal transducer and activator of transcription 2; CBP/P300, STAT2, TAZ1, transactivation domain, bromodomain, alternative splicing; NMR {Homo sapiens}
Probab=70.10 E-value=2.6 Score=30.28 Aligned_cols=35 Identities=34% Similarity=0.445 Sum_probs=28.8
Q ss_pred CCCCcccccccccCCCCCcccccccCC-CCCCCCCC
Q 024662 10 SPPVPALWFPHSLQKTPKFEFPIFRNP-NISNSTSN 44 (264)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 44 (264)
|-|||.-=.||.||.--.-|.-||||+ +|..-+.|
T Consensus 2 ~~~~~EpDLP~DL~~lnte~meifrN~~~ieeImpn 37 (57)
T 2ka4_B 2 SHMVPEPDLPHDLRHLNTEPMEIFRNSVKIEEIMPN 37 (57)
T ss_dssp CSSCCCCCCCHHHHTSCCTGGGGGTTSCCTTTSSCS
T ss_pred CCCCCCCCccHHHHHhChHHHHHHhccccHhhcccC
Confidence 456777778999999998899999999 88776654
No 4
>3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomal sorting, ESCRT-I; 1.45A {Saccharomyces cerevisiae} SCOP: d.20.1.2 PDB: 3r42_A 1uzx_A*
Probab=39.67 E-value=15 Score=30.94 Aligned_cols=60 Identities=22% Similarity=0.307 Sum_probs=40.1
Q ss_pred cccccccc-CCCCCccc-c-----------cccCCCCCCCCCCCCCCcccccccCCC-cchHHHHHHHHHHHccccCc
Q 024662 15 ALWFPHSL-QKTPKFEF-P-----------IFRNPNISNSTSNCNSSKMLLLHRANA-APSLQVAVSEAMNLVQLSQP 78 (264)
Q Consensus 15 ~~~~~~~~-~~~~~~~~-~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 78 (264)
.+|||+.. .+-|+.-| | |+.+||+..+..-| ++.+++=.+ +-.+.+.+++-..+++..+|
T Consensus 86 ~IwlP~~YP~~PP~v~v~p~t~~m~~~~~~I~~hpnVD~~G~I~----lpyL~~W~p~~s~L~~ll~~l~~lf~ep~~ 159 (162)
T 3r3q_A 86 IMWVPSMYPVKPPFISINLENFDMNTISSSLPIQEYIDSNGWIA----LPILHAWDPAAMNLIMVVQELMSLLHEPPQ 159 (162)
T ss_dssp EEECCTTTTTSCCEEEECGGGCCTTTSCTTSTHHHHBCTTSBBC----CGGGGSCCGGGCCHHHHHHHHHHTTSCCCC
T ss_pred EEEeCcccCCCCCEEEEECCCccccccccccCCCCCCCCCCcEe----CcccccCCCCcCcHHHHHHHHHHHhcCCCC
Confidence 58999988 45555544 4 44467775544444 344455555 45889999998888887776
No 5
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=35.81 E-value=69 Score=20.80 Aligned_cols=17 Identities=35% Similarity=0.604 Sum_probs=13.2
Q ss_pred cCCChHHHHHHHHHHHHH
Q 024662 100 SGLSPSGIAAAFLLGTLT 117 (264)
Q Consensus 100 k~LT~sGa~aA~lvG~l~ 117 (264)
+.|+ .|++++.++|.+.
T Consensus 6 ~~ls-~GaIAGiVvG~v~ 22 (38)
T 2k1k_A 6 RGLT-GGEIVAVIFGLLL 22 (38)
T ss_dssp TTCC-HHHHHHHHHHHHH
T ss_pred CCCC-CCceeeeehHHHH
Confidence 3465 8899999999875
No 6
>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A
Probab=27.65 E-value=80 Score=25.24 Aligned_cols=59 Identities=24% Similarity=0.355 Sum_probs=35.6
Q ss_pred cccccccC-CCCC--cccccccCCCCCCCCCCCCCCcccccccCCCcchHHHHHHHHHHHccccCc
Q 024662 16 LWFPHSLQ-KTPK--FEFPIFRNPNISNSTSNCNSSKMLLLHRANAAPSLQVAVSEAMNLVQLSQP 78 (264)
Q Consensus 16 ~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (264)
+.||...- +-|+ |.-||| +|||..+..-|-+- +..+=.++-.++.+|...+.++...+|
T Consensus 57 i~fp~~YP~~PP~v~f~t~i~-HPnv~~~G~iCl~i---L~~~W~p~~~i~~vl~~i~~ll~~p~~ 118 (152)
T 2aak_A 57 LQFSEDYPNKPPTVRFVSRMF-HPNIYADGSICLDI---LQNQWSPIYDVAAILTSIQSLLCDPNP 118 (152)
T ss_dssp EECCTTTTTSCCEEEESSCCC-CTTBCTTSBBCCGG---GTTSCCTTCCHHHHHHHHHHHHTSCCT
T ss_pred EECCCCCCCCCCEEEEecCcc-cCCCCCCCEEechh---hcCCCCCCCcHHHHHHHHHHHHhCCCC
Confidence 34554432 3444 344665 79999877778642 112344556788888887777765554
No 7
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=25.25 E-value=91 Score=25.67 Aligned_cols=57 Identities=21% Similarity=0.409 Sum_probs=34.6
Q ss_pred ccccc-CCCCCccc--ccccCCCCCCCCCCCCCCcccccccCCCcchHHHHHHHHHHHccccCc
Q 024662 18 FPHSL-QKTPKFEF--PIFRNPNISNSTSNCNSSKMLLLHRANAAPSLQVAVSEAMNLVQLSQP 78 (264)
Q Consensus 18 ~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (264)
||... .+-|+..| ||| +|||..+..-|-+- +..+=.++-.++.+|...+.++...+|
T Consensus 59 fp~~YP~~PP~v~F~t~i~-HPNI~~~G~ICl~i---L~~~WsP~~~i~~vL~si~~ll~~Pn~ 118 (169)
T 1ayz_A 59 FDEEYPNKPPHVKFLSEMF-HPNVYANGEICLDI---LQNRWTPTYDVASILTSIQSLFNDPNP 118 (169)
T ss_dssp CCTTTTTSCCEEEESSCCC-CTTBCTTSBBCCGG---GTTTCCTTCCHHHHHHHHHHHHTCCCC
T ss_pred CcccCCCCCCccccccCCc-cCCCCCCCeEeehh---hccCCCCcCcHHHHHHHHHHHHhCCCC
Confidence 44433 24455444 666 69999877778652 123344556788888777766665554
No 8
>1kvd_A SMK toxin; halotolerant yeast; 1.80A {Pichia farinosa} SCOP: d.70.1.2 PDB: 1kve_A
Probab=25.15 E-value=28 Score=24.81 Aligned_cols=33 Identities=27% Similarity=0.379 Sum_probs=28.3
Q ss_pred CCCCCCcccchhhHHHHHHHHHHHHHHHHHhcc
Q 024662 229 VPRGTEGAVSVEGTFAGIFASILLAWVGCLTGQ 261 (264)
Q Consensus 229 VppGTnGgVSllGtlAsllGs~lIa~va~llg~ 261 (264)
.-.|-+|+-+.-|+..+++|.+.-++++.+-|.
T Consensus 15 aiagcsgaatfgglaggivgciaagilailqgf 47 (63)
T 1kvd_A 15 AIAGCSGAATFGGLAGGIVGCIAAGILAILQGF 47 (63)
T ss_dssp CBCCCSSCCCCTTCCSHHHHHHHHHHHHHHHHH
T ss_pred HHhCCccchhcccccchHHHHHHHHHHHHHhcc
Confidence 346999999999999999999998888877653
No 9
>2l34_A TYRO protein tyrosine kinase-binding protein; immunoreceptor, transmembrane assembly, DAP12, protein bindi; NMR {Homo sapiens} PDB: 2l35_B
Probab=24.91 E-value=89 Score=19.79 Aligned_cols=14 Identities=29% Similarity=0.627 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHH
Q 024662 105 SGIAAAFLLGTLTW 118 (264)
Q Consensus 105 sGa~aA~lvG~l~~ 118 (264)
.|+++++++|-+..
T Consensus 6 ~gaIaGIVvgdi~~ 19 (33)
T 2l34_A 6 PGVLAGIVVGDLVL 19 (33)
T ss_dssp THHHHHHHHHHHHH
T ss_pred cceEEeEeHHHHHH
Confidence 57888898888764
No 10
>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B
Probab=24.27 E-value=55 Score=25.92 Aligned_cols=52 Identities=13% Similarity=0.134 Sum_probs=28.8
Q ss_pred CCCCc--ccccccCCCCCCCCCCCCCCcccccccCCCcchHHHHHHHHHHHccccC
Q 024662 24 KTPKF--EFPIFRNPNISNSTSNCNSSKMLLLHRANAAPSLQVAVSEAMNLVQLSQ 77 (264)
Q Consensus 24 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (264)
+-|+. .-||| +|||...+..+ -+-+..+.+=.++-.++.++...+.++...+
T Consensus 72 ~PP~v~f~t~i~-HPnv~~~~G~i-~~cL~~l~~W~p~~~i~~vl~~i~~ll~~pn 125 (138)
T 1jat_B 72 SPPKVTFISKIN-LPCVNPTTGEV-QTDFHTLRDWKRAYTMETLLLDLRKEMATPA 125 (138)
T ss_dssp SCCEEEESBCCC-CTTBCTTTCBB-CTTSHHHHTCCTTCCHHHHHHHHHHHHTSHH
T ss_pred CCCceEEEcccc-cCCEeCCCCEE-eeecccCCCCCCcCcHHHHHHHHHHHHcCCC
Confidence 34443 33665 79998764442 1112222344556677888877766665443
No 11
>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1
Probab=24.04 E-value=93 Score=25.02 Aligned_cols=58 Identities=22% Similarity=0.354 Sum_probs=36.0
Q ss_pred ccccccC-CCCC--cccccccCCCCCCCCCCCCCCcccccccCCCcchHHHHHHHHHHHccccCc
Q 024662 17 WFPHSLQ-KTPK--FEFPIFRNPNISNSTSNCNSSKMLLLHRANAAPSLQVAVSEAMNLVQLSQP 78 (264)
Q Consensus 17 ~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (264)
.||...- +-|+ |.-||| +|||..+..-|-+- +..+=.++-.++.+|...+.++...+|
T Consensus 63 ~fp~~YP~~PP~v~f~t~i~-HPnv~~~G~iCl~i---L~~~W~p~~~i~~vL~si~~ll~~pn~ 123 (156)
T 2e2c_A 63 EFPSDYPYKPPVVKFTTPCW-HPNVDQSGNICLDI---LKENWTASYDVRTILLSLQSLLGEPNN 123 (156)
T ss_dssp ECCTTTTSSCCEEEESSCCC-BTTBCTTCBBCCGG---GTTTCCTTCCHHHHHHHHHHHTTSCCC
T ss_pred ECCCCCCCCCCEEEEeCCcc-cCCCccCceEECcc---ccccCCCCCcHHHHHHHHHHHHhCCCC
Confidence 3444432 3444 444777 79999877778652 112344556788888877777766554
No 12
>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A
Probab=23.43 E-value=91 Score=25.54 Aligned_cols=59 Identities=25% Similarity=0.415 Sum_probs=36.2
Q ss_pred ccccccc-CCCCCccc--ccccCCCCCCCCCCCCCCcccccccCCCcchHHHHHHHHHHHccccCc
Q 024662 16 LWFPHSL-QKTPKFEF--PIFRNPNISNSTSNCNSSKMLLLHRANAAPSLQVAVSEAMNLVQLSQP 78 (264)
Q Consensus 16 ~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (264)
+.||... .+-|+..| ||| +|||+.+..-|-+-- ..+=.++-.++.+|...+.++...+|
T Consensus 72 i~fp~~YP~~PP~v~F~T~i~-HPnV~~~G~ICl~iL---~~~W~P~~ti~~vL~si~~ll~~pn~ 133 (165)
T 2c4o_A 72 IHFPTDYPFKPPKVAFTTRIY-HPNINSNGSICLDIL---RSQWSPALTISKVLLSICSLLCDPNP 133 (165)
T ss_dssp EECCTTTTSSCCEEEECSCCC-BTTBCTTCBBCCGGG---TTTCCTTCCHHHHHHHHHHHHHSCCT
T ss_pred EECCCcCCCCCCEEEEecCCc-CCcCCCCCeEeehhh---cCCCCCcCcHHHHHHHHHHHHhCCCC
Confidence 3455444 34455444 665 799988777786521 13444557788888877777765554
No 13
>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ...
Probab=23.03 E-value=96 Score=24.71 Aligned_cols=58 Identities=26% Similarity=0.388 Sum_probs=35.5
Q ss_pred cccccc-CCCCCcc--cccccCCCCCCCCCCCCCCcccccccCCCcchHHHHHHHHHHHccccCc
Q 024662 17 WFPHSL-QKTPKFE--FPIFRNPNISNSTSNCNSSKMLLLHRANAAPSLQVAVSEAMNLVQLSQP 78 (264)
Q Consensus 17 ~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (264)
.||... .+-|+.. -||| +|||..+..-|-+- +..+=.++-.++.+|...+.++...+|
T Consensus 58 ~fp~~YP~~PP~v~f~t~i~-HPnv~~~G~iCl~i---L~~~W~p~~~i~~vl~~i~~ll~~pn~ 118 (150)
T 1z2u_A 58 HFPTDYPFKPPKVAFTTRIY-HPNINSNGSICLDI---LRSQWSPALTISKVLLSICSLLCDPNP 118 (150)
T ss_dssp ECCTTTTSSCCEEEESSCCC-BTTBCTTCBBCCGG---GTTTCCTTCCHHHHHHHHHHHHHSCCT
T ss_pred ECCCCCCCCCcEEEEecCcc-cCcCCCCCeEeecc---ccCCCCCCCCHHHHHHHHHHHhhCCCC
Confidence 345443 2445443 4665 79998877778642 112444557788888888777766554
No 14
>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C
Probab=22.71 E-value=1.2e+02 Score=24.31 Aligned_cols=48 Identities=23% Similarity=0.351 Sum_probs=30.0
Q ss_pred cccccccCCCCCCCCCCCCCCcccccccCCCcchHHHHHHHHHHHccccCc
Q 024662 28 FEFPIFRNPNISNSTSNCNSSKMLLLHRANAAPSLQVAVSEAMNLVQLSQP 78 (264)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (264)
|.-||| +|||..+..-|-+-- -..+=.++-+++++|...+.++...++
T Consensus 70 f~t~i~-HPnv~~~G~iCl~iL--~~~~W~p~~~i~~vl~~i~~ll~~p~~ 117 (154)
T 1c4z_D 70 FKTKIY-HPNIDEKGQVCLPVI--SAENWKPATKTDQVIQSLIALVNDPQP 117 (154)
T ss_dssp ESSCCC-CTTBCTTCBBCCTTT--SSSSCCTTCCHHHHHHHHHHHHHSCCC
T ss_pred EeCCCc-cccCCCCCEEECCCC--CCCCCCCCCcHHHHHHHHHHHHcCCCC
Confidence 444676 699998777786521 012334555788888777777665554
No 15
>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A
Probab=21.90 E-value=1.1e+02 Score=24.60 Aligned_cols=59 Identities=19% Similarity=0.246 Sum_probs=35.0
Q ss_pred ccccccC-CCCC--cccccccCCCCCCCCCCCCCCcccccccCCCcchHHHHHHHHHHHccccCc
Q 024662 17 WFPHSLQ-KTPK--FEFPIFRNPNISNSTSNCNSSKMLLLHRANAAPSLQVAVSEAMNLVQLSQP 78 (264)
Q Consensus 17 ~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (264)
.||...- +-|+ |.-||| +|||..+..-|-+--- ..+=.++-.++.+|...+.++...+|
T Consensus 58 ~fp~~YP~~PP~v~f~t~i~-HPnV~~~G~iCl~iL~--~~~W~p~~~i~~vl~~i~~ll~~p~~ 119 (155)
T 1wzv_A 58 SFPPEYPFKPPMIKFTTKIY-HPNVDENGQICLPIIS--SENWKPCTKTCQVLEALNVLVNRPNI 119 (155)
T ss_dssp ECCTTTTSSCCEEEESSCCC-BTTBCTTCBCCCGGGC--TTTCCTTCCHHHHHHHHHHHHHSCCS
T ss_pred ECCCCCCCCCCcceeeCCCc-cCcCCCCCeEeecCCC--ccCCCCCCcHHHHHHHHHHHHhCCCC
Confidence 4454432 3444 444775 6999887777865210 12334556788888877777766555
No 16
>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A
Probab=20.84 E-value=1.3e+02 Score=24.95 Aligned_cols=50 Identities=18% Similarity=0.258 Sum_probs=30.9
Q ss_pred cccccccCCCCCCCCCCCCCCcccc----------cccCCCcchHHHHHHHHHHHccccCc
Q 024662 28 FEFPIFRNPNISNSTSNCNSSKMLL----------LHRANAAPSLQVAVSEAMNLVQLSQP 78 (264)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (264)
|.-||| +|||..+..-|-+---.+ ..+=.++-+++.+|...+.++...+|
T Consensus 76 f~t~i~-HPnV~~~G~iClsiL~~~~~~~~~~~~~~~~W~p~~~i~~vL~si~~ll~~Pn~ 135 (183)
T 3rz3_A 76 FLTKMW-HPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNT 135 (183)
T ss_dssp ESSCCC-CTTBCTTSBBCCTTC--------------CCCCTTCCHHHHHHHHHHHHHSCCC
T ss_pred ecCCCc-cCCCCCCCcEehhhcCcccccccccccccCCCCCcCcHHHHHHHHHHHHhCCCC
Confidence 444676 899998888887642110 13445566677777777766665554
Done!