Query 024662
Match_columns 264
No_of_seqs 161 out of 418
Neff 4.1
Searched_HMMs 13730
Date Mon Mar 25 12:14:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024662.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/024662hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1fusa_ d.1.1.4 (A:) RNase F1 32.0 6.4 0.00046 29.4 0.9 19 15-36 47-65 (106)
2 d1rdsa_ d.1.1.4 (A:) RNase Ms 26.0 13 0.00096 27.6 1.7 24 15-41 46-69 (105)
3 d1pzva_ d.20.1.1 (A:) Ubiquiti 22.8 35 0.0025 25.6 3.8 50 28-78 69-128 (161)
4 d1ayza_ d.20.1.1 (A:) Ubiquiti 19.3 48 0.0035 24.4 3.8 48 27-78 70-117 (153)
5 d1jata_ d.20.1.1 (A:) Ubiquiti 18.4 46 0.0033 24.8 3.6 48 27-78 70-117 (152)
6 d2a4da1 d.20.1.1 (A:82-220) Ub 16.6 47 0.0034 24.7 3.2 51 24-75 71-123 (139)
7 d1yh2a1 d.20.1.1 (A:1-154) Ubi 16.5 57 0.0041 24.0 3.6 50 28-78 70-120 (154)
8 d2ucza_ d.20.1.1 (A:) Ubiquiti 14.7 75 0.0055 23.6 4.0 54 24-78 66-131 (164)
9 d2fo3a1 d.20.1.1 (A:9-117) Put 14.6 78 0.0057 22.2 3.9 45 24-71 60-106 (109)
10 d1i7ka_ d.20.1.1 (A:) Ubiquiti 14.3 73 0.0053 23.5 3.8 51 24-78 63-115 (146)
No 1
>d1fusa_ d.1.1.4 (A:) RNase F1 {Fusarium moniliforme [TaxId: 117187]}
Probab=32.01 E-value=6.4 Score=29.44 Aligned_cols=19 Identities=37% Similarity=0.531 Sum_probs=14.4
Q ss_pred ccccccccCCCCCcccccccCC
Q 024662 15 ALWFPHSLQKTPKFEFPIFRNP 36 (264)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~ 36 (264)
.+||| ...|..||||+++-
T Consensus 47 ~~~F~---~~~~~~EyPi~~~g 65 (106)
T d1fusa_ 47 GFDFP---VDGPYQEFPIKSGG 65 (106)
T ss_dssp CCCCS---SCSCEEEEECCTTS
T ss_pred CcccC---CCCcceEeeEecCC
Confidence 46777 34789999999864
No 2
>d1rdsa_ d.1.1.4 (A:) RNase Ms {Molsin (Aspergillus saitoi) [TaxId: 5063]}
Probab=26.03 E-value=13 Score=27.60 Aligned_cols=24 Identities=21% Similarity=0.516 Sum_probs=17.1
Q ss_pred ccccccccCCCCCcccccccCCCCCCC
Q 024662 15 ALWFPHSLQKTPKFEFPIFRNPNISNS 41 (264)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 41 (264)
.++||- +.|..||||+++..+-+.
T Consensus 46 g~~f~~---~~~~~EfPi~~~g~~y~G 69 (105)
T d1rdsa_ 46 GFDFPV---SGTYYEYPIMSDYDVYTG 69 (105)
T ss_dssp CCCCSS---CSCEEEEEBCTTCCBCCS
T ss_pred CCccCC---CCcceEeeeEccCccccC
Confidence 355663 468899999998766554
No 3
>d1pzva_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]}
Probab=22.81 E-value=35 Score=25.64 Aligned_cols=50 Identities=16% Similarity=0.175 Sum_probs=30.0
Q ss_pred cccccccCCCCCCCCCCCCCCcc----------cccccCCCcchHHHHHHHHHHHccccCc
Q 024662 28 FEFPIFRNPNISNSTSNCNSSKM----------LLLHRANAAPSLQVAVSEAMNLVQLSQP 78 (264)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (264)
|.-||| +|||.....-|-+--- +...+=.++-.+++.|...+..+...++
T Consensus 69 f~t~i~-HPnI~~~G~vcl~~l~~~~~~~~~~~~~~~~W~p~~~i~~iL~~i~~ll~~p~~ 128 (161)
T d1pzva_ 69 FISEIW-HPNIDKEGNVCISILHDPGDDKWGYERPEERWLPVHTVETILLSVISMLTDPNF 128 (161)
T ss_dssp ECSCCC-CTTBCTTSBBCCGGGCCC---------CCSSCCTTCCHHHHHHHHHHHHHSCCC
T ss_pred ecCCCC-CcccCCCCccchhhcCCcccccccccccccccCccccHHHHHHHHHHHHhCCCC
Confidence 444676 7999988888854111 1112234456788888777666655443
No 4
>d1ayza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]}
Probab=19.30 E-value=48 Score=24.37 Aligned_cols=48 Identities=21% Similarity=0.357 Sum_probs=29.9
Q ss_pred CcccccccCCCCCCCCCCCCCCcccccccCCCcchHHHHHHHHHHHccccCc
Q 024662 27 KFEFPIFRNPNISNSTSNCNSSKMLLLHRANAAPSLQVAVSEAMNLVQLSQP 78 (264)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (264)
+|.-||| +|||.....-|-+ +.. ..-.+.-.+++.|...+.++...++
T Consensus 70 ~f~t~i~-HPnI~~~G~icl~--~l~-~~W~p~~~i~~il~~i~~ll~~p~~ 117 (153)
T d1ayza_ 70 KFLSEMF-HPNVYANGEICLD--ILQ-NRWTPTYDVASILTSIQSLFNDPNP 117 (153)
T ss_dssp EESSCCC-CTTBCTTSBBCCG--GGT-TTCCTTCCHHHHHHHHHHHHTCCCC
T ss_pred eeccCCC-ccCCCCCCccccc--ccc-ccCCCcCcHHHHHHHHHHHHcCCCC
Confidence 4555776 7999887777864 222 2233455678888776666665444
No 5
>d1jata_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]}
Probab=18.45 E-value=46 Score=24.84 Aligned_cols=48 Identities=21% Similarity=0.325 Sum_probs=29.7
Q ss_pred CcccccccCCCCCCCCCCCCCCcccccccCCCcchHHHHHHHHHHHccccCc
Q 024662 27 KFEFPIFRNPNISNSTSNCNSSKMLLLHRANAAPSLQVAVSEAMNLVQLSQP 78 (264)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (264)
+|.-||| +|||.+...-|-+- +...-.+.-.+++.|...+.++...++
T Consensus 70 ~F~t~i~-HPnI~~~G~icl~~---~~~~W~p~~~i~~il~~i~~ll~~P~~ 117 (152)
T d1jata_ 70 RFLTKIY-HPNIDRLGRICLDV---LKTNWSPALQIRTVLLSIQALLASPNP 117 (152)
T ss_dssp EECSCCC-BTTBCTTCCBCCGG---GTTTCCTTCCHHHHHHHHHHHHHSCCT
T ss_pred EecCCCC-CCcCCCCCCeeecc---ccccCCchhHHHHHHHHHHHHHcCCCC
Confidence 4555776 79998877667441 122234456678888777777765443
No 6
>d2a4da1 d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 variant 1 [TaxId: 9606]}
Probab=16.56 E-value=47 Score=24.65 Aligned_cols=51 Identities=18% Similarity=0.232 Sum_probs=31.3
Q ss_pred CCCCccc--ccccCCCCCCCCCCCCCCcccccccCCCcchHHHHHHHHHHHccc
Q 024662 24 KTPKFEF--PIFRNPNISNSTSNCNSSKMLLLHRANAAPSLQVAVSEAMNLVQL 75 (264)
Q Consensus 24 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (264)
+.|+..| ||| .|||..++..|....+..+.+=.++-+++..|..-+.++..
T Consensus 71 ~pP~v~F~t~i~-HpnV~~~~g~~~~~~l~~l~~Wsp~~ti~~iL~~i~slL~~ 123 (139)
T d2a4da1 71 APPFVRFVTKIN-MNGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMS 123 (139)
T ss_dssp SCCEEEESBCCC-CTTBCTTTCBBCGGGSHHHHTCCTTCCHHHHHHHHHHHHTS
T ss_pred CCCEEEEecCcc-cccCcCCCCEEcceecCcccCCCccCcHHHHHHHHHHHHCC
Confidence 3455444 775 78888777666555554444444556677777766665544
No 7
>d1yh2a1 d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 T [TaxId: 9606]}
Probab=16.46 E-value=57 Score=24.01 Aligned_cols=50 Identities=20% Similarity=0.305 Sum_probs=29.9
Q ss_pred cccccccCCCCCCCCCCCCCCcccc-cccCCCcchHHHHHHHHHHHccccCc
Q 024662 28 FEFPIFRNPNISNSTSNCNSSKMLL-LHRANAAPSLQVAVSEAMNLVQLSQP 78 (264)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (264)
|.-||| +|||..++.-|.+---.. ...-.++-+++.+|.....++...++
T Consensus 70 f~t~i~-HPnV~~~g~icl~~l~~~~~~~w~p~~~i~~il~~i~~ll~~p~~ 120 (154)
T d1yh2a1 70 FLTPIY-HPNIDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNP 120 (154)
T ss_dssp ESSCCC-BTTBCTTCBBCCGGGSCTTTSCCCTTSCHHHHHHHHHHHHHSCCT
T ss_pred ccCCCC-cCCcCCCCCcccccccCCccccCCccccHHHHHHHHHHHhccCCC
Confidence 444666 799998888886422111 11234566777777766666654443
No 8
>d2ucza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]}
Probab=14.72 E-value=75 Score=23.63 Aligned_cols=54 Identities=20% Similarity=0.229 Sum_probs=32.2
Q ss_pred CCCCcc--cccccCCCCCCCCCCCCCCccc----cc------ccCCCcchHHHHHHHHHHHccccCc
Q 024662 24 KTPKFE--FPIFRNPNISNSTSNCNSSKML----LL------HRANAAPSLQVAVSEAMNLVQLSQP 78 (264)
Q Consensus 24 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~----~~------~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (264)
+.|+.. -||| +|||...+.-|-+---. .. .+=.++-.+++.|...+..+...++
T Consensus 66 ~pP~v~f~t~i~-HPnv~~~G~vCl~il~~~~~~~~~~~~~~~~w~p~~ti~~il~~i~~ll~~p~~ 131 (164)
T d2ucza_ 66 SPPKLTFTPSIL-HPNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSEPNI 131 (164)
T ss_dssp SCCEEEESSCCS-CTTBCTTSBBCCGGGSCCCSCTTSTTTTTTSCCTTCCHHHHHHHHHHHHHSCCG
T ss_pred CCCeEEeecCce-eceEcCCCCeeeccccCccccccccccccccCCccccHHHHHHHHHHHHhCCCC
Confidence 455544 4666 99999988888542111 00 1124455678888777777765544
No 9
>d2fo3a1 d.20.1.1 (A:9-117) Putative ubiquitin-conjugating enzyme, E2 domain {Plasmodium chabaudi [TaxId: 5825]}
Probab=14.63 E-value=78 Score=22.20 Aligned_cols=45 Identities=20% Similarity=0.186 Sum_probs=26.7
Q ss_pred CCCCccc--ccccCCCCCCCCCCCCCCcccccccCCCcchHHHHHHHHHH
Q 024662 24 KTPKFEF--PIFRNPNISNSTSNCNSSKMLLLHRANAAPSLQVAVSEAMN 71 (264)
Q Consensus 24 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (264)
+-|+..| +++.+||+.....-|-+- . ...=.++-.++++|...+.
T Consensus 60 ~pP~v~F~t~~~~hpni~~~G~iCl~i--l-~~~Wsp~~ti~~vl~~i~~ 106 (109)
T d2fo3a1 60 KPPIVYFLQKPPKHTHVYSNGDICLSL--L-GDDYNPSLSISGLVLSIIS 106 (109)
T ss_dssp SCCEEEECSSCCCBTTBCTTSBBCCGG--G-TTTCCTTCCHHHHHHHHHH
T ss_pred CCCeEEEEeccccCceECCCCeEEeec--c-cCCCCccCCHHHHHHHHHH
Confidence 4577766 577799999888888541 1 1122344555555554443
No 10
>d1i7ka_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch10 [TaxId: 9606]}
Probab=14.30 E-value=73 Score=23.50 Aligned_cols=51 Identities=16% Similarity=0.260 Sum_probs=32.0
Q ss_pred CCCC--cccccccCCCCCCCCCCCCCCcccccccCCCcchHHHHHHHHHHHccccCc
Q 024662 24 KTPK--FEFPIFRNPNISNSTSNCNSSKMLLLHRANAAPSLQVAVSEAMNLVQLSQP 78 (264)
Q Consensus 24 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (264)
+.|+ |.-||| +|||.....-|-+ +.. .+-.++-+++..|...+..+...++
T Consensus 63 ~pP~v~f~t~i~-HPnV~~~G~icl~--~l~-~~W~p~~~i~~il~~i~~ll~~p~~ 115 (146)
T d1i7ka_ 63 NAPTVKFLTPCY-HPNVDTQGNISLD--ILK-EKWSALYDVRTILLSIQSLLGEPNI 115 (146)
T ss_dssp SCCEEEESSCCC-STTBCTTCBBCCG--GGT-TTCCTTCCHHHHHHHHHHHHHSCCT
T ss_pred CCceeeecCCCC-cccCCCCCccccc--ccc-ccCCCCcCHHHHHHHHHHHHhCCCC
Confidence 4454 444777 6999988888864 111 2334556788888777666665443
Done!