Query 024663
Match_columns 264
No_of_seqs 147 out of 328
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 06:26:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024663.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024663hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03283 PAE: Pectinacetyleste 100.0 9.2E-79 2E-83 576.3 17.2 248 13-263 2-251 (361)
2 KOG4287 Pectin acetylesterase 100.0 6.7E-80 1.4E-84 572.2 9.1 252 9-263 20-272 (402)
3 KOG1515 Arylacetamide deacetyl 96.5 0.015 3.3E-07 55.5 8.9 108 47-190 75-190 (336)
4 PRK10162 acetyl esterase; Prov 94.9 0.049 1.1E-06 50.7 5.6 44 147-190 132-178 (318)
5 PF00135 COesterase: Carboxyle 94.8 0.093 2E-06 50.9 7.6 95 146-247 185-288 (535)
6 cd00312 Esterase_lipase Estera 94.2 0.14 3.1E-06 49.9 7.2 94 146-246 153-255 (493)
7 PF00326 Peptidase_S9: Prolyl 94.1 0.056 1.2E-06 46.5 3.8 39 147-185 45-83 (213)
8 PF10340 DUF2424: Protein of u 92.4 0.9 2E-05 44.2 9.4 109 49-189 107-218 (374)
9 PRK10566 esterase; Provisional 92.0 0.38 8.2E-06 41.9 5.9 54 149-206 90-143 (249)
10 PF07859 Abhydrolase_3: alpha/ 90.4 0.55 1.2E-05 39.9 5.2 43 148-190 50-95 (211)
11 PF12695 Abhydrolase_5: Alpha/ 87.5 0.99 2.1E-05 35.4 4.4 40 145-185 41-80 (145)
12 COG0657 Aes Esterase/lipase [L 87.2 1.2 2.6E-05 40.7 5.5 42 149-190 132-176 (312)
13 PF10503 Esterase_phd: Esteras 87.2 2.9 6.3E-05 37.6 7.7 40 149-192 80-119 (220)
14 TIGR01840 esterase_phb esteras 86.9 0.98 2.1E-05 39.1 4.4 37 148-184 77-113 (212)
15 PLN02408 phospholipase A1 86.7 3.9 8.6E-05 39.7 8.8 64 154-224 188-252 (365)
16 PF01764 Lipase_3: Lipase (cla 86.4 3.2 7E-05 32.9 6.9 56 165-226 63-119 (140)
17 cd00707 Pancreat_lipase_like P 85.3 2.5 5.5E-05 38.7 6.5 58 149-209 95-152 (275)
18 PF00450 Peptidase_S10: Serine 84.9 10 0.00022 35.7 10.6 128 59-201 38-175 (415)
19 COG2939 Carboxypeptidase C (ca 84.8 12 0.00025 37.9 11.2 139 48-202 87-237 (498)
20 KOG1282 Serine carboxypeptidas 84.3 5.6 0.00012 39.7 8.8 146 45-208 56-214 (454)
21 PRK10115 protease 2; Provision 83.7 0.87 1.9E-05 47.3 3.0 36 147-182 505-540 (686)
22 PF00756 Esterase: Putative es 82.8 1.3 2.8E-05 38.7 3.4 50 148-201 97-147 (251)
23 PF12242 Eno-Rase_NADH_b: NAD( 82.0 2.1 4.6E-05 32.7 3.7 34 147-180 20-55 (78)
24 PLN02802 triacylglycerol lipas 81.9 7.8 0.00017 39.2 8.8 52 166-223 330-381 (509)
25 PLN02454 triacylglycerol lipas 79.8 11 0.00024 37.3 8.9 64 154-224 216-282 (414)
26 cd00519 Lipase_3 Lipase (class 79.7 6.9 0.00015 34.2 6.9 39 165-204 127-165 (229)
27 PRK13604 luxD acyl transferase 79.1 4.4 9.6E-05 38.4 5.7 52 146-207 91-142 (307)
28 COG3509 LpqC Poly(3-hydroxybut 78.0 18 0.0004 34.4 9.4 33 150-182 128-160 (312)
29 PF07819 PGAP1: PGAP1-like pro 77.2 13 0.00028 33.1 8.0 34 150-183 66-102 (225)
30 cd00741 Lipase Lipase. Lipase 77.0 7 0.00015 31.9 5.8 28 164-191 26-53 (153)
31 cd07224 Pat_like Patatin-like 76.9 3 6.6E-05 37.4 3.8 32 153-185 17-48 (233)
32 TIGR02821 fghA_ester_D S-formy 76.7 3.6 7.7E-05 37.2 4.2 23 164-186 136-158 (275)
33 PF00975 Thioesterase: Thioest 75.6 10 0.00022 32.3 6.7 52 149-203 51-102 (229)
34 COG2272 PnbA Carboxylesterase 75.6 3.3 7.2E-05 41.6 4.0 38 145-182 156-196 (491)
35 cd07198 Patatin Patatin-like p 75.1 3.7 8E-05 34.6 3.7 30 153-185 16-45 (172)
36 PLN02324 triacylglycerol lipas 74.3 13 0.00029 36.7 7.7 38 152-190 201-239 (415)
37 PRK10439 enterobactin/ferric e 73.2 7.6 0.00016 38.0 5.8 29 163-191 285-313 (411)
38 PF08840 BAAT_C: BAAT / Acyl-C 72.2 8.5 0.00018 33.8 5.4 55 149-207 5-59 (213)
39 PLN03037 lipase class 3 family 72.1 18 0.00038 36.9 8.1 55 164-224 316-370 (525)
40 COG1770 PtrB Protease II [Amin 71.9 4.1 8.9E-05 42.4 3.7 92 146-237 507-611 (682)
41 cd07222 Pat_PNPLA4 Patatin-lik 71.5 4.4 9.6E-05 36.7 3.5 32 153-184 17-49 (246)
42 COG1506 DAP2 Dipeptidyl aminop 70.3 4.9 0.00011 41.1 3.9 37 148-184 455-491 (620)
43 TIGR03100 hydr1_PEP hydrolase, 68.6 9.6 0.00021 34.4 5.1 36 148-184 83-118 (274)
44 PLN02442 S-formylglutathione h 68.0 7.6 0.00016 35.5 4.3 22 164-185 141-162 (283)
45 PF03583 LIP: Secretory lipase 68.0 10 0.00022 35.1 5.2 64 145-209 43-115 (290)
46 KOG1209 1-Acyl dihydroxyaceton 67.9 14 0.0003 34.1 5.8 66 162-227 4-76 (289)
47 cd07218 Pat_iPLA2 Calcium-inde 67.6 6.8 0.00015 35.6 3.8 31 153-184 18-48 (245)
48 PF02230 Abhydrolase_2: Phosph 67.5 11 0.00023 32.7 4.9 35 149-184 89-123 (216)
49 PF05728 UPF0227: Uncharacteri 67.3 13 0.00028 32.5 5.4 36 151-192 46-81 (187)
50 PF12740 Chlorophyllase2: Chlo 66.9 11 0.00023 35.1 5.0 39 148-187 65-112 (259)
51 cd07204 Pat_PNPLA_like Patatin 66.7 6.9 0.00015 35.3 3.7 32 153-184 17-49 (243)
52 PLN02298 hydrolase, alpha/beta 65.8 19 0.00042 32.8 6.5 51 148-202 116-166 (330)
53 KOG1516 Carboxylesterase and r 65.7 10 0.00022 37.6 4.9 36 149-184 175-213 (545)
54 PF12697 Abhydrolase_6: Alpha/ 65.2 25 0.00054 28.3 6.5 38 166-207 66-103 (228)
55 PLN02209 serine carboxypeptida 62.8 82 0.0018 31.2 10.6 140 39-190 42-191 (437)
56 PLN00021 chlorophyllase 62.8 13 0.00028 34.9 4.9 38 150-187 102-147 (313)
57 cd07205 Pat_PNPLA6_PNPLA7_NTE1 62.5 17 0.00037 30.4 5.2 31 151-184 16-46 (175)
58 PLN02310 triacylglycerol lipas 62.5 42 0.00091 33.2 8.4 52 165-223 208-259 (405)
59 KOG4627 Kynurenine formamidase 62.4 8.8 0.00019 35.2 3.4 28 154-182 125-152 (270)
60 TIGR03101 hydr2_PEP hydrolase, 60.9 23 0.0005 32.6 6.0 61 149-223 85-145 (266)
61 PF01738 DLH: Dienelactone hyd 59.8 13 0.00029 31.9 4.1 38 147-184 79-116 (218)
62 TIGR03230 lipo_lipase lipoprot 59.5 24 0.00053 35.1 6.3 55 149-208 102-158 (442)
63 PLN02965 Probable pheophorbida 59.0 25 0.00055 30.7 5.8 38 162-203 68-105 (255)
64 PRK11460 putative hydrolase; P 58.1 19 0.00041 31.8 4.9 34 150-183 87-120 (232)
65 PTZ00472 serine carboxypeptida 57.9 73 0.0016 31.6 9.4 113 59-190 75-195 (462)
66 PLN02211 methyl indole-3-aceta 56.6 33 0.00071 30.9 6.2 24 162-185 83-106 (273)
67 PF06028 DUF915: Alpha/beta hy 55.7 26 0.00056 32.2 5.4 60 146-209 85-146 (255)
68 TIGR03695 menH_SHCHC 2-succiny 55.2 29 0.00063 28.4 5.3 23 164-186 68-90 (251)
69 cd07207 Pat_ExoU_VipD_like Exo 54.4 17 0.00036 30.8 3.8 30 152-184 16-45 (194)
70 KOG2237 Predicted serine prote 54.3 12 0.00026 39.1 3.2 34 145-178 528-561 (712)
71 PRK10673 acyl-CoA esterase; Pr 54.3 29 0.00063 29.7 5.3 36 165-204 80-115 (255)
72 PRK05077 frsA fermentation/res 54.2 39 0.00084 32.9 6.7 34 149-182 248-281 (414)
73 PF08237 PE-PPE: PE-PPE domain 53.9 42 0.00092 30.2 6.4 55 145-203 31-88 (225)
74 TIGR03056 bchO_mg_che_rel puta 53.7 38 0.00083 29.1 6.0 35 165-203 94-128 (278)
75 TIGR01738 bioH putative pimelo 53.2 30 0.00065 28.5 5.0 51 150-207 52-102 (245)
76 PRK10349 carboxylesterase BioH 52.9 38 0.00082 29.4 5.8 49 151-206 62-110 (256)
77 PLN02894 hydrolase, alpha/beta 52.0 42 0.00091 32.3 6.5 51 150-207 163-214 (402)
78 TIGR00976 /NonD putative hydro 52.0 21 0.00045 35.8 4.6 36 148-184 80-115 (550)
79 COG0412 Dienelactone hydrolase 51.8 24 0.00052 31.7 4.5 41 147-187 93-133 (236)
80 KOG4569 Predicted lipase [Lipi 51.2 45 0.00097 31.7 6.4 82 149-238 156-245 (336)
81 PLN02824 hydrolase, alpha/beta 51.2 47 0.001 29.5 6.3 48 150-204 89-136 (294)
82 PRK15231 fimbrial adhesin prot 50.6 27 0.00059 29.8 4.3 62 45-114 78-139 (150)
83 cd07220 Pat_PNPLA2 Patatin-lik 50.5 19 0.00041 32.9 3.7 31 153-183 22-53 (249)
84 PF00151 Lipase: Lipase; Inte 50.4 41 0.00089 32.0 6.0 82 114-211 103-194 (331)
85 cd07230 Pat_TGL4-5_like Triacy 50.3 20 0.00043 35.4 4.0 30 153-185 91-120 (421)
86 TIGR03739 PRTRC_D PRTRC system 50.0 30 0.00064 32.3 5.0 34 163-202 272-305 (320)
87 COG4814 Uncharacterized protei 49.5 23 0.00049 33.3 4.0 44 148-193 120-165 (288)
88 KOG3724 Negative regulator of 48.9 51 0.0011 35.6 6.8 64 162-231 178-244 (973)
89 PRK00870 haloalkane dehalogena 48.2 56 0.0012 29.3 6.3 37 165-205 114-150 (302)
90 PLN00413 triacylglycerol lipas 47.1 78 0.0017 32.0 7.6 36 153-190 273-308 (479)
91 TIGR03712 acc_sec_asp2 accesso 46.9 14 0.0003 37.4 2.3 46 142-188 329-379 (511)
92 PF01734 Patatin: Patatin-like 46.4 16 0.00035 29.3 2.3 18 168-185 29-46 (204)
93 PLN02571 triacylglycerol lipas 46.2 43 0.00093 33.2 5.6 29 162-190 221-250 (413)
94 PF06500 DUF1100: Alpha/beta h 46.2 26 0.00057 34.6 4.1 35 148-182 243-277 (411)
95 PRK04940 hypothetical protein; 45.6 40 0.00088 29.6 4.8 23 166-192 60-82 (180)
96 cd07210 Pat_hypo_W_succinogene 45.5 27 0.00059 31.0 3.8 29 153-184 18-46 (221)
97 TIGR03611 RutD pyrimidine util 45.4 42 0.0009 28.1 4.8 21 165-185 79-99 (257)
98 PLN03016 sinapoylglucose-malat 45.1 1.1E+02 0.0024 30.2 8.3 132 46-189 50-188 (433)
99 TIGR02240 PHA_depoly_arom poly 45.0 37 0.00079 30.0 4.6 36 165-204 90-125 (276)
100 cd07228 Pat_NTE_like_bacteria 43.2 36 0.00078 28.7 4.1 28 153-183 18-45 (175)
101 PLN02733 phosphatidylcholine-s 42.8 46 0.00099 33.1 5.2 33 150-184 148-180 (440)
102 PF09752 DUF2048: Uncharacteri 42.2 54 0.0012 31.8 5.4 37 151-194 163-199 (348)
103 PLN02719 triacylglycerol lipas 41.8 51 0.0011 33.6 5.4 26 165-190 297-322 (518)
104 KOG2183 Prolylcarboxypeptidase 41.3 46 0.00099 33.4 4.8 59 141-203 135-208 (492)
105 PLN02753 triacylglycerol lipas 40.8 54 0.0012 33.6 5.4 53 165-223 311-369 (531)
106 COG1752 RssA Predicted esteras 40.6 31 0.00068 31.9 3.6 30 153-185 29-58 (306)
107 PLN02162 triacylglycerol lipas 40.4 59 0.0013 32.8 5.6 126 61-190 163-302 (475)
108 PF06821 Ser_hydrolase: Serine 40.0 72 0.0016 27.2 5.4 35 148-185 40-74 (171)
109 PF00091 Tubulin: Tubulin/FtsZ 39.3 91 0.002 27.3 6.1 49 146-194 103-156 (216)
110 PRK13917 plasmid segregation p 39.0 71 0.0015 30.3 5.8 26 162-192 289-314 (344)
111 cd07390 MPP_AQ1575 Aquifex aeo 38.4 37 0.00081 28.4 3.4 53 123-176 2-54 (168)
112 cd07209 Pat_hypo_Ecoli_Z1214_l 38.1 39 0.00086 29.6 3.6 29 153-184 16-44 (215)
113 PF05577 Peptidase_S28: Serine 37.9 1E+02 0.0022 29.8 6.7 40 164-208 111-150 (434)
114 PRK10749 lysophospholipase L2; 37.9 1.1E+02 0.0024 28.2 6.7 21 165-185 130-150 (330)
115 cd07206 Pat_TGL3-4-5_SDP1 Tria 37.8 43 0.00092 31.7 4.0 29 153-184 87-115 (298)
116 PLN02934 triacylglycerol lipas 37.7 66 0.0014 32.8 5.5 38 150-189 307-344 (515)
117 cd07225 Pat_PNPLA6_PNPLA7 Pata 37.5 39 0.00085 31.7 3.7 30 153-185 33-62 (306)
118 PRK10279 hypothetical protein; 37.3 41 0.00088 31.6 3.8 29 153-184 23-51 (300)
119 COG2945 Predicted hydrolase of 37.3 40 0.00087 30.4 3.5 40 147-187 85-124 (210)
120 PF05677 DUF818: Chlamydia CHL 37.1 71 0.0015 31.1 5.4 53 150-205 198-254 (365)
121 PLN02847 triacylglycerol lipas 36.6 91 0.002 32.6 6.3 25 166-190 251-275 (633)
122 PF05057 DUF676: Putative seri 36.5 32 0.0007 30.2 2.8 47 142-189 55-101 (217)
123 cd07208 Pat_hypo_Ecoli_yjju_li 36.4 43 0.00093 30.1 3.7 30 152-183 15-44 (266)
124 cd01819 Patatin_and_cPLA2 Pata 36.3 54 0.0012 27.3 4.0 32 152-184 15-46 (155)
125 PF00561 Abhydrolase_1: alpha/ 36.1 64 0.0014 26.5 4.5 36 149-186 29-64 (230)
126 PRK10985 putative hydrolase; P 36.1 1E+02 0.0022 28.3 6.3 33 148-182 115-147 (324)
127 KOG2564 Predicted acetyltransf 35.8 58 0.0012 31.2 4.4 38 151-193 134-171 (343)
128 TIGR02427 protocat_pcaD 3-oxoa 35.4 82 0.0018 25.8 5.0 21 165-185 78-98 (251)
129 COG0627 Predicted esterase [Ge 35.2 40 0.00087 32.0 3.4 26 167-192 153-178 (316)
130 KOG4389 Acetylcholinesterase/B 35.2 59 0.0013 33.3 4.6 122 119-245 137-298 (601)
131 cd07213 Pat17_PNPLA8_PNPLA9_li 35.1 62 0.0014 29.7 4.6 35 150-184 17-52 (288)
132 cd07232 Pat_PLPL Patain-like p 34.7 49 0.0011 32.5 4.0 31 152-185 84-114 (407)
133 TIGR01392 homoserO_Ac_trn homo 34.6 1E+02 0.0023 28.5 6.1 37 166-206 126-163 (351)
134 cd07221 Pat_PNPLA3 Patatin-lik 34.5 47 0.001 30.3 3.6 32 153-184 18-50 (252)
135 KOG3101 Esterase D [General fu 34.5 16 0.00034 33.7 0.5 36 147-182 117-157 (283)
136 PLN02578 hydrolase 34.2 1.3E+02 0.0027 28.1 6.5 39 165-207 151-190 (354)
137 TIGR03343 biphenyl_bphD 2-hydr 34.2 91 0.002 27.1 5.3 23 164-186 99-121 (282)
138 PF12715 Abhydrolase_7: Abhydr 34.1 40 0.00087 33.2 3.2 39 144-182 202-242 (390)
139 cd07231 Pat_SDP1-like Sugar-De 34.0 53 0.0012 31.5 4.0 30 153-185 86-115 (323)
140 KOG1552 Predicted alpha/beta h 33.5 1E+02 0.0022 28.7 5.7 41 147-192 112-152 (258)
141 COG0031 CysK Cysteine synthase 32.8 1.3E+02 0.0027 28.7 6.2 57 141-205 238-295 (300)
142 PRK11071 esterase YqiA; Provis 32.6 98 0.0021 26.4 5.1 34 149-184 46-79 (190)
143 PRK03204 haloalkane dehalogena 32.4 1.2E+02 0.0026 27.2 5.9 50 149-204 86-135 (286)
144 PRK03592 haloalkane dehalogena 32.3 1.5E+02 0.0033 26.3 6.5 34 166-203 93-126 (295)
145 KOG4391 Predicted alpha/beta h 32.3 17 0.00036 33.7 0.3 43 149-191 132-174 (300)
146 PF03575 Peptidase_S51: Peptid 32.3 46 0.00099 27.6 2.9 11 168-178 70-80 (154)
147 TIGR01836 PHA_synth_III_C poly 32.2 60 0.0013 30.2 4.0 34 149-184 121-154 (350)
148 PRK11126 2-succinyl-6-hydroxy- 32.2 1.8E+02 0.0039 24.6 6.7 22 164-185 64-85 (242)
149 COG1509 KamA Lysine 2,3-aminom 31.8 49 0.0011 32.3 3.4 45 119-173 123-167 (369)
150 TIGR01250 pro_imino_pep_2 prol 31.8 1.5E+02 0.0033 24.9 6.2 21 165-185 95-115 (288)
151 PLN02872 triacylglycerol lipas 31.3 77 0.0017 30.8 4.7 36 144-182 141-176 (395)
152 PF04260 DUF436: Protein of un 31.1 57 0.0012 28.6 3.4 26 150-175 3-28 (172)
153 PRK06489 hypothetical protein; 30.9 1.1E+02 0.0025 28.4 5.7 48 150-203 139-187 (360)
154 cd07386 MPP_DNA_pol_II_small_a 30.9 1.5E+02 0.0033 26.2 6.3 32 146-177 15-48 (243)
155 PF01083 Cutinase: Cutinase; 30.6 2E+02 0.0043 24.6 6.7 40 145-186 62-101 (179)
156 cd07227 Pat_Fungal_NTE1 Fungal 29.8 64 0.0014 29.8 3.7 30 153-185 28-57 (269)
157 COG2382 Fes Enterochelin ester 29.4 1E+02 0.0022 29.3 5.0 65 143-212 148-218 (299)
158 PLN02761 lipase class 3 family 29.3 1.2E+02 0.0025 31.2 5.7 54 165-224 293-353 (527)
159 cd07229 Pat_TGL3_like Triacylg 28.8 68 0.0015 31.5 3.9 30 153-185 101-130 (391)
160 KOG1553 Predicted alpha/beta h 28.7 1.2E+02 0.0025 30.1 5.3 74 145-227 290-364 (517)
161 PF02450 LCAT: Lecithin:choles 28.2 85 0.0018 30.3 4.4 37 148-187 104-140 (389)
162 COG3208 GrsT Predicted thioest 27.9 4.2E+02 0.0091 24.5 8.6 85 148-233 54-141 (244)
163 PRK04123 ribulokinase; Provisi 27.8 1.4E+02 0.003 29.9 6.0 78 117-203 378-475 (548)
164 CHL00024 psbI photosystem II p 27.7 34 0.00073 22.5 1.1 12 100-111 21-32 (36)
165 PF00106 adh_short: short chai 27.7 2.5E+02 0.0054 22.3 6.5 93 149-257 12-114 (167)
166 PLN02385 hydrolase; alpha/beta 27.7 1.1E+02 0.0023 28.4 4.9 18 166-183 162-179 (349)
167 PRK02655 psbI photosystem II r 27.6 34 0.00074 22.7 1.1 12 100-111 21-32 (38)
168 COG2201 CheB Chemotaxis respon 27.5 1.1E+02 0.0023 29.8 4.9 28 164-194 155-182 (350)
169 PF08538 DUF1749: Protein of u 27.5 1.1E+02 0.0023 29.2 4.8 66 115-188 63-130 (303)
170 PRK08775 homoserine O-acetyltr 27.2 1.2E+02 0.0027 27.9 5.2 34 167-204 139-172 (343)
171 PF02129 Peptidase_S15: X-Pro 27.0 87 0.0019 28.0 4.1 37 148-185 84-120 (272)
172 PHA02857 monoglyceride lipase; 27.0 1.2E+02 0.0025 26.6 4.8 34 150-185 83-116 (276)
173 PRK13690 hypothetical protein; 26.8 88 0.0019 27.7 3.8 28 148-175 8-35 (184)
174 PF04631 Baculo_44: Baculoviru 26.8 41 0.00089 32.7 1.9 38 39-81 94-137 (371)
175 PLN02652 hydrolase; alpha/beta 26.7 1.1E+02 0.0023 29.7 4.8 34 149-184 193-226 (395)
176 PF11187 DUF2974: Protein of u 26.5 1.7E+02 0.0037 26.2 5.8 34 150-186 71-104 (224)
177 COG0596 MhpC Predicted hydrola 26.1 1.8E+02 0.0038 23.2 5.4 21 168-188 90-110 (282)
178 PRK06179 short chain dehydroge 25.8 4.4E+02 0.0096 22.9 8.5 62 164-230 3-72 (270)
179 cd06377 PBP1_iGluR_NMDA_NR3 N- 25.7 1.1E+02 0.0023 30.0 4.6 63 112-177 147-223 (382)
180 TIGR03607 patatin-related prot 25.6 1.6E+02 0.0034 31.5 6.1 29 149-178 49-78 (739)
181 TIGR01440 conserved hypothetic 25.4 76 0.0016 27.8 3.1 27 149-175 2-28 (172)
182 PF10290 DUF2403: Glycine-rich 25.4 40 0.00087 24.9 1.2 23 128-150 34-56 (65)
183 COG1505 Serine proteases of th 25.1 34 0.00074 35.6 1.1 35 144-178 478-512 (648)
184 PF11288 DUF3089: Protein of u 23.9 1.2E+02 0.0025 27.3 4.2 36 145-181 75-110 (207)
185 cd07219 Pat_PNPLA1 Patatin-lik 23.6 92 0.002 30.6 3.7 31 154-184 31-62 (382)
186 COG1075 LipA Predicted acetylt 23.5 1.6E+02 0.0034 27.9 5.2 26 163-192 124-149 (336)
187 COG3007 Uncharacterized paraqu 23.4 2.5E+02 0.0055 27.2 6.4 67 147-223 21-90 (398)
188 PLN02511 hydrolase 23.4 1.2E+02 0.0025 29.1 4.4 34 149-184 158-191 (388)
189 smart00704 ZnF_CDGSH CDGSH-typ 23.2 33 0.00071 22.6 0.4 6 122-127 26-31 (38)
190 PRK00175 metX homoserine O-ace 23.1 2E+02 0.0043 27.2 5.8 37 166-206 146-183 (379)
191 COG4947 Uncharacterized protei 22.9 52 0.0011 29.5 1.6 35 152-192 89-123 (227)
192 PRK05371 x-prolyl-dipeptidyl a 22.8 1.4E+02 0.0031 31.7 5.2 36 147-182 305-354 (767)
193 COG4099 Predicted peptidase [G 22.7 1.1E+02 0.0023 29.8 3.8 41 149-189 252-292 (387)
194 PRK15222 putative pilin struct 22.7 1.1E+02 0.0024 26.4 3.6 65 44-114 78-142 (156)
195 PF10081 Abhydrolase_9: Alpha/ 22.3 1.4E+02 0.003 28.3 4.5 45 146-192 89-135 (289)
196 PRK07581 hypothetical protein; 22.3 1.6E+02 0.0034 27.0 4.8 22 166-187 123-145 (339)
197 PF05448 AXE1: Acetyl xylan es 22.2 79 0.0017 29.8 2.9 43 140-184 148-193 (320)
198 PF10230 DUF2305: Uncharacteri 21.6 1E+02 0.0022 28.1 3.4 17 164-180 82-98 (266)
199 PF02532 PsbI: Photosystem II 21.4 41 0.00088 22.1 0.5 12 100-111 21-32 (36)
200 PF13173 AAA_14: AAA domain 21.3 1.1E+02 0.0024 24.1 3.2 30 148-179 74-103 (128)
201 cd07212 Pat_PNPLA9 Patatin-lik 21.0 1.4E+02 0.0031 27.9 4.4 35 150-184 14-50 (312)
202 TIGR01138 cysM cysteine syntha 20.8 1.7E+02 0.0037 26.9 4.7 36 166-204 246-281 (290)
203 KOG4409 Predicted hydrolase/ac 20.6 2.1E+02 0.0045 28.1 5.3 53 149-208 146-198 (365)
204 PRK11761 cysM cysteine synthas 20.4 1.2E+02 0.0025 28.2 3.6 36 166-204 250-285 (296)
205 PF07172 GRP: Glycine rich pro 20.4 86 0.0019 24.7 2.3 15 10-24 9-23 (95)
206 PLN03087 BODYGUARD 1 domain co 20.1 3.1E+02 0.0068 27.5 6.7 40 165-208 273-312 (481)
207 smart00824 PKS_TE Thioesterase 20.0 4.6E+02 0.01 20.9 7.1 38 165-203 63-100 (212)
No 1
>PF03283 PAE: Pectinacetylesterase
Probab=100.00 E-value=9.2e-79 Score=576.29 Aligned_cols=248 Identities=46% Similarity=0.845 Sum_probs=236.5
Q ss_pred HHHHHHHHhhCCCccceEEEecccCCCccccCCCCCeEEEecCCCCCCccEEEEeeccccccCchhhhcccCCCCCCccc
Q 024663 13 LVCALILLKADGFNVGITYVENAVVKGAVCLDGSPPAYHFDKGFGAGINNWLVHIEGGGWCNNVTTCLERKKTRLGSSKQ 92 (264)
Q Consensus 13 ~~~~~~~~~~~~~~~~~t~~~~a~~~gA~ClDGSp~~y~~~~g~g~~s~k~lI~leGGG~C~d~~tC~~r~~t~lGSs~~ 92 (264)
|+|++.+..++...++||+|++|++++|+|+||||++||+|||+|++++||||||||||||||.++|..|+.|.+|||+.
T Consensus 2 ~~~~~~~~~~~~~~~~l~~l~~~~~~~a~C~DGS~~~yy~~~g~g~~s~~~li~leGGG~C~~~~tC~~r~~t~~gss~~ 81 (361)
T PF03283_consen 2 LICLLVASNAQSDEVKLTLLDDAVDTGAVCLDGSPPGYYFRPGSGSGSNKWLIFLEGGGWCWDAETCAQRSSTNLGSSKN 81 (361)
T ss_pred eEEEeeeccccccccceEEecCCCCCCCCcCCCCCCcEEEccCCCCCCceEEEEeccchhcCChhHHhhhccCccccccc
Confidence 34555555567889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccccCCCCCCCCCccCceeEEEecCCCCccCCCccc-ccCCCceeEehHHHHHHHHHHHHHhCCCccCeEEEE
Q 024663 93 MVKVVAFSGMLSNKQKFNPDFYNWNRIKVRYCDGASFTGDVEA-VNPANNLHFRGARVFQAVMEDLMAKGMKNAQNAVLS 171 (264)
Q Consensus 93 ~~~~~~~~Gils~~~~~NP~F~nwN~V~vpYCdGd~~~Gd~~~-~~~~~~l~frG~~n~~avl~~L~~~gl~~a~~Vlls 171 (264)
|++...+.|||++++++||+|+|||+|||||||||+|+|+++. .+++.++||||++|++|||+||+++|+++|++|||+
T Consensus 82 ~~~~~~~~Gils~~~~~Np~f~~wN~V~vpYC~Gd~~~G~~~~~~~~~~~l~frG~~i~~avl~~l~~~gl~~a~~vllt 161 (361)
T PF03283_consen 82 WPKTFAFSGILSNDPAENPDFYNWNHVFVPYCDGDSHSGDVEPVDYGGTTLYFRGYRILRAVLDDLLSNGLPNAKQVLLT 161 (361)
T ss_pred hhhhccccccccCCcccCCccccccEEEEEecCCccccCcccccccCCceeEeecHHHHHHHHHHHHHhcCcccceEEEe
Confidence 9999999999999999999999999999999999999998774 356789999999999999999999889999999999
Q ss_pred eeChhhHHHHHhhHHHHhhCCCCceEEEeeccccccccCCCCCchhHHHHHHHHHHhccccCCchh-hccCCCchhHHHh
Q 024663 172 GCSAGGLTSILHCDNFRALFPVGTKVKCFADAGYFINAKDVSGASHIEQFYAQVVATHVHTLFLTL-CHAYTDKLMFLTF 250 (264)
Q Consensus 172 G~SAGGlga~~~~d~v~~~lp~~a~v~~l~DSG~fld~~~~~g~~~~~~~~~~~~~~~~~~~~lp~-C~~~~~p~~~~~~ 250 (264)
||||||+||++|+|+||++||+.++|++++|||||+|.++++|...++.+++.++++|+.++.+|+ |.+.++|. ||
T Consensus 162 G~SAGG~g~~~~~d~~~~~lp~~~~v~~~~DsG~f~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~C~~~~~~~---C~ 238 (361)
T PF03283_consen 162 GCSAGGLGAILHADYVRDRLPSSVKVKCLSDSGFFLDNPDYSGNPCIRSFYSDVVGLQNWSKSLPESCVAQYDPE---CF 238 (361)
T ss_pred ccChHHHHHHHHHHHHHHHhccCceEEEeccccccccccCcccchhHHHHHHHHHHHHHhhccCCHhHHhccCcc---cc
Confidence 999999999999999999999999999999999999999999999999999999999999999998 99999999 99
Q ss_pred HHHHHHhhhhccc
Q 024663 251 LLMCVVKYAQLIV 263 (264)
Q Consensus 251 ~~~~~~~~~~~~~ 263 (264)
||++++||||+|+
T Consensus 239 f~q~~~~~I~tPl 251 (361)
T PF03283_consen 239 FPQYLYPYIKTPL 251 (361)
T ss_pred chHHHHhhcCcce
Confidence 9999999999996
No 2
>KOG4287 consensus Pectin acetylesterase and similar proteins [Cell wall/membrane/envelope biogenesis]
Probab=100.00 E-value=6.7e-80 Score=572.24 Aligned_cols=252 Identities=54% Similarity=0.972 Sum_probs=237.9
Q ss_pred HHHHHHHHHHHHhhCCCccceEEEecccCCCccccCCCCCeEEEecCCCCCCccEEEEeeccccccCchhhhcccCCCCC
Q 024663 9 WLNLLVCALILLKADGFNVGITYVENAVVKGAVCLDGSPPAYHFDKGFGAGINNWLVHIEGGGWCNNVTTCLERKKTRLG 88 (264)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~t~~~~a~~~gA~ClDGSp~~y~~~~g~g~~s~k~lI~leGGG~C~d~~tC~~r~~t~lG 88 (264)
|...++...+++......|++|+|+.|.++||+|+|||+|+||+.||+|+|+++|||+|||||||.+..+|..|..|++|
T Consensus 20 ~s~~lv~~~~~~~s~~~~v~ltli~~A~akGAvClDGSlpgYhl~~g~GSg~n~wliqlegGgwC~~i~sCv~Rk~tr~G 99 (402)
T KOG4287|consen 20 WSIPLVFGSLVIGSPGLMVPLTLIRGAAAKGAVCLDGSLPGYHLHRGSGSGANNWLIQLEGGGWCNNIRSCVYRKMTRLG 99 (402)
T ss_pred hhhhhhhhhhcccCccccchhHHHhhHhhcCceecCCCCcceeeccCCCccccceeEecccccccccchhHHHHhhcccc
Confidence 34444444444544557899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccccccccccCCCCCCCCCccCceeEEEecCCCCccCCCcccccCCCceeEehHHHHHHHHHHHHHhCCCccCeE
Q 024663 89 SSKQMVKVVAFSGMLSNKQKFNPDFYNWNRIKVRYCDGASFTGDVEAVNPANNLHFRGARVFQAVMEDLMAKGMKNAQNA 168 (264)
Q Consensus 89 Ss~~~~~~~~~~Gils~~~~~NP~F~nwN~V~vpYCdGd~~~Gd~~~~~~~~~l~frG~~n~~avl~~L~~~gl~~a~~V 168 (264)
||++|++...|.||||+++++||||+|||+|+||||||++|+||.+...+ ++++|||++||+|||++|+.+||.+|++.
T Consensus 100 SS~~mek~~~FtGILS~k~~eNPdF~NWNrVkvRYCDGasFsGd~e~~~~-t~l~fRG~rIw~av~~eLl~kGms~Ak~a 178 (402)
T KOG4287|consen 100 SSNYMEKELAFTGILSNKPSENPDFYNWNRVKVRYCDGASFSGDSENKNA-TQLQFRGARIWLAVMDELLAKGMSNAKQA 178 (402)
T ss_pred ccccchhhcceeEEecCCcccCCcccccceeEEeecCCCcccCcccccch-hhhhhhHHHHHHHHHHHHHHhhhhHHHHH
Confidence 99999999999999999999999999999999999999999998875443 39999999999999999999999999999
Q ss_pred EEEeeChhhHHHHHhhHHHHhhCCCCceEEEeeccccccccCCCCCchhHHHHHHHHHHhccccCCchh-hccCCCchhH
Q 024663 169 VLSGCSAGGLTSILHCDNFRALFPVGTKVKCFADAGYFINAKDVSGASHIEQFYAQVVATHVHTLFLTL-CHAYTDKLMF 247 (264)
Q Consensus 169 llsG~SAGGlga~~~~d~v~~~lp~~a~v~~l~DSG~fld~~~~~g~~~~~~~~~~~~~~~~~~~~lp~-C~~~~~p~~~ 247 (264)
||+||||||+|+++|||++|++||++++|+|++|||||||..|+.|.+.++.+|..++++||.+++||+ |+++++|.+
T Consensus 179 lLsGcSAGGLa~iLhCD~Fr~~lp~~t~VKClSDaG~FLd~~dv~g~~t~~~~~~~vv~lqg~~k~Lp~~Ct~~~~p~~- 257 (402)
T KOG4287|consen 179 LLSGCSAGGLASILHCDEFRELLPPTTKVKCLSDAGFFLDAKDVSGGPTLRSYYAGVVTLQGLQKNLPQSCTSHLEPSL- 257 (402)
T ss_pred HhhcCCccchhheeehHHHHhhCCCCceeEEecccceeeecccccCCcchhhhhhhheeeecccccCCHHHHhcCCchh-
Confidence 999999999999999999999999999999999999999999999999999999999999999999998 999999988
Q ss_pred HHhHHHHHHhhhhccc
Q 024663 248 LTFLLMCVVKYAQLIV 263 (264)
Q Consensus 248 ~~~~~~~~~~~~~~~~ 263 (264)
|||||+++|.|+|||
T Consensus 258 -CfFpq~v~~~irtP~ 272 (402)
T KOG4287|consen 258 -CFFPQYVLKTIRTPV 272 (402)
T ss_pred -hcchHHHHhhcCCce
Confidence 999999999999997
No 3
>KOG1515 consensus Arylacetamide deacetylase [Defense mechanisms]
Probab=96.45 E-value=0.015 Score=55.47 Aligned_cols=108 Identities=20% Similarity=0.171 Sum_probs=60.7
Q ss_pred CCeEEEecCCCC-CCccEEEEeeccccccCc--hhhhcccCCCCCCccccccccccccccC---CCCCCCCCccCceeEE
Q 024663 47 PPAYHFDKGFGA-GINNWLVHIEGGGWCNNV--TTCLERKKTRLGSSKQMVKVVAFSGMLS---NKQKFNPDFYNWNRIK 120 (264)
Q Consensus 47 p~~y~~~~g~g~-~s~k~lI~leGGG~C~d~--~tC~~r~~t~lGSs~~~~~~~~~~Gils---~~~~~NP~F~nwN~V~ 120 (264)
+-..|.-..+.. .....||||=|||||-.- ..|+....+++ ....+ .=++| +-.+|+| |=
T Consensus 75 ~vRly~P~~~~~~~~~p~lvyfHGGGf~~~S~~~~~y~~~~~~~------a~~~~-~vvvSVdYRLAPEh~-~P------ 140 (336)
T KOG1515|consen 75 PVRLYRPTSSSSETKLPVLVYFHGGGFCLGSANSPAYDSFCTRL------AAELN-CVVVSVDYRLAPEHP-FP------ 140 (336)
T ss_pred EEEEEcCCCCCcccCceEEEEEeCCccEeCCCCCchhHHHHHHH------HHHcC-eEEEecCcccCCCCC-CC------
Confidence 334444444333 467899999999999762 23333211111 01000 01122 3356666 21
Q ss_pred EecCCCCccCCCcccccCCCceeEehHHHHHHHHH--HHHHhCCCccCeEEEEeeChhhHHHHHhhHHHHhh
Q 024663 121 VRYCDGASFTGDVEAVNPANNLHFRGARVFQAVME--DLMAKGMKNAQNAVLSGCSAGGLTSILHCDNFRAL 190 (264)
Q Consensus 121 vpYCdGd~~~Gd~~~~~~~~~l~frG~~n~~avl~--~L~~~gl~~a~~VllsG~SAGGlga~~~~d~v~~~ 190 (264)
.-|.-|..-++-+++ |+. --.++++|+|+|.||||--|..=+.++++.
T Consensus 141 --------------------a~y~D~~~Al~w~~~~~~~~--~~~D~~rv~l~GDSaGGNia~~va~r~~~~ 190 (336)
T KOG1515|consen 141 --------------------AAYDDGWAALKWVLKNSWLK--LGADPSRVFLAGDSAGGNIAHVVAQRAADE 190 (336)
T ss_pred --------------------ccchHHHHHHHHHHHhHHHH--hCCCcccEEEEccCccHHHHHHHHHHHhhc
Confidence 233344444444555 333 235778899999999998888888888764
No 4
>PRK10162 acetyl esterase; Provisional
Probab=94.93 E-value=0.049 Score=50.72 Aligned_cols=44 Identities=18% Similarity=0.117 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHh--CCC-ccCeEEEEeeChhhHHHHHhhHHHHhh
Q 024663 147 ARVFQAVMEDLMAK--GMK-NAQNAVLSGCSAGGLTSILHCDNFRAL 190 (264)
Q Consensus 147 ~~n~~avl~~L~~~--gl~-~a~~VllsG~SAGGlga~~~~d~v~~~ 190 (264)
.....++++|+.++ .+. ++++|+|.|.||||.-|..-+-.+++.
T Consensus 132 ~~D~~~a~~~l~~~~~~~~~d~~~i~l~G~SaGG~la~~~a~~~~~~ 178 (318)
T PRK10162 132 IEEIVAVCCYFHQHAEDYGINMSRIGFAGDSAGAMLALASALWLRDK 178 (318)
T ss_pred HHHHHHHHHHHHHhHHHhCCChhHEEEEEECHHHHHHHHHHHHHHhc
Confidence 35677888888752 233 578999999999999888877777654
No 5
>PF00135 COesterase: Carboxylesterase family The prints entry is specific to acetylcholinesterase; InterPro: IPR002018 Higher eukaryotes have many distinct esterases. Among the different types are those which act on carboxylic esters (3.1.1 from EC). Carboxyl-esterases have been classified into three categories (A, B and C) on the basis of differential patterns of inhibition by organophosphates. The sequence of a number of type-B carboxylesterases indicates [, , ] that the majority are evolutionary related. As is the case for lipases and serine proteases, the catalytic apparatus of esterases involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.; PDB: 3B3Q_A 1CLE_B 1GQS_A 2VJD_A 1HBJ_A 2C5G_A 1U65_A 2WG1_A 1FSS_A 3M3D_A ....
Probab=94.84 E-value=0.093 Score=50.85 Aligned_cols=95 Identities=16% Similarity=0.071 Sum_probs=61.8
Q ss_pred hHHHHHHHHHHHHHh--CC-CccCeEEEEeeChhhHHHHHhhHHHH--hhCCCCceEEEeeccccccccCCCCCchhHHH
Q 024663 146 GARVFQAVMEDLMAK--GM-KNAQNAVLSGCSAGGLTSILHCDNFR--ALFPVGTKVKCFADAGYFINAKDVSGASHIEQ 220 (264)
Q Consensus 146 G~~n~~avl~~L~~~--gl-~~a~~VllsG~SAGGlga~~~~d~v~--~~lp~~a~v~~l~DSG~fld~~~~~g~~~~~~ 220 (264)
|..-.+++|+|+.++ .| +++++|.|.|.||||..+.+|.-.=. .+|. ++|.-||-.+......-.. +.
T Consensus 185 Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~l~sp~~~~LF~-----raI~~SGs~~~~~~~~~~~--~~ 257 (535)
T PF00135_consen 185 GLLDQRLALKWVQDNIAAFGGDPDNVTLFGQSAGAASVSLLLLSPSSKGLFH-----RAILQSGSALSPWATSENP--EQ 257 (535)
T ss_dssp HHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGGTTSBS-----EEEEES--TTSTTSSBSHH--HH
T ss_pred hhhhhHHHHHHHHhhhhhcccCCcceeeeeecccccccceeeeccccccccc-----ccccccccccccccccccc--ch
Confidence 566788999999983 55 48999999999999999988766511 2232 4455566333332222222 66
Q ss_pred HHHHHHHhccccCCc----hhhccCCCchhH
Q 024663 221 FYAQVVATHVHTLFL----TLCHAYTDKLMF 247 (264)
Q Consensus 221 ~~~~~~~~~~~~~~l----p~C~~~~~p~~~ 247 (264)
.++.+++.-|+...- =+|+-..++...
T Consensus 258 ~~~~la~~lgc~~~~~~~~l~cLR~~~~~~L 288 (535)
T PF00135_consen 258 QAQKLAKALGCDDSDSSDILECLRSLPAEEL 288 (535)
T ss_dssp HHHHHHHHTTSTTSSHHHHHHHHHHS-HHHH
T ss_pred hhhhhhhhhccccccccchhhhhhhhhccch
Confidence 778888877776544 348877777663
No 6
>cd00312 Esterase_lipase Esterases and lipases (includes fungal lipases, cholinesterases, etc.) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These catalytic residues are responsible for the nucleophilic attack on the carbonyl carbon atom of the ester bond. In contrast with other alpha/beta hydrolase fold family members, p-nitrobenzyl esterase and acetylcholine esterase have a Glu instead of Asp at the active site carboxylate.
Probab=94.20 E-value=0.14 Score=49.89 Aligned_cols=94 Identities=13% Similarity=0.118 Sum_probs=57.8
Q ss_pred hHHHHHHHHHHHHHh--CC-CccCeEEEEeeChhhHHHHHhhHH--HHhhCCCCceEEEeeccccccccCCCCCchhHHH
Q 024663 146 GARVFQAVMEDLMAK--GM-KNAQNAVLSGCSAGGLTSILHCDN--FRALFPVGTKVKCFADAGYFINAKDVSGASHIEQ 220 (264)
Q Consensus 146 G~~n~~avl~~L~~~--gl-~~a~~VllsG~SAGGlga~~~~d~--v~~~lp~~a~v~~l~DSG~fld~~~~~g~~~~~~ 220 (264)
|..-..++|+|+.++ .+ .++++|.|.|.||||..+..|.-. .+.++. +++.-||........ ....+.
T Consensus 153 g~~D~~~al~wv~~~i~~fggd~~~v~~~G~SaG~~~~~~~~~~~~~~~lf~-----~~i~~sg~~~~~~~~--~~~~~~ 225 (493)
T cd00312 153 GLKDQRLALKWVQDNIAAFGGDPDSVTIFGESAGGASVSLLLLSPDSKGLFH-----RAISQSGSALSPWAI--QENARG 225 (493)
T ss_pred hHHHHHHHHHHHHHHHHHhCCCcceEEEEeecHHHHHhhhHhhCcchhHHHH-----HHhhhcCCccCcccc--cccHHH
Confidence 567788999999874 33 589999999999999888776543 222332 345556654322111 112244
Q ss_pred HHHHHHHhccccCC----chhhccCCCchh
Q 024663 221 FYAQVVATHVHTLF----LTLCHAYTDKLM 246 (264)
Q Consensus 221 ~~~~~~~~~~~~~~----lp~C~~~~~p~~ 246 (264)
..+.+.+.-|+... +-+|+-..++..
T Consensus 226 ~~~~~~~~lgc~~~~~~~~l~cLr~~~~~~ 255 (493)
T cd00312 226 RAKRLARLLGCNDTSSAELLDCLRSKSAEE 255 (493)
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHhcCCHHH
Confidence 55566665566443 235887766655
No 7
>PF00326 Peptidase_S9: Prolyl oligopeptidase family This family belongs to family S9 of the peptidase classification.; InterPro: IPR001375 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain covers the active site serine of the serine peptidases belonging to MEROPS peptidase family S9 (prolyl oligopeptidase family, clan SC). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Examples of protein families containing this domain are: Prolyl endopeptidase (3.4.21.26 from EC) (PE) (also called post-proline cleaving enzyme). PE is an enzyme that cleaves peptide bonds on the C-terminal side of prolyl residues. The sequence of PE has been obtained from a mammalian species (pig) and from bacteria (Flavobacterium meningosepticum and Aeromonas hydrophila); there is a high degree of sequence conservation between these sequences. Escherichia coli protease II (3.4.21.83 from EC) (oligopeptidase B) (gene prtB) which cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Dipeptidyl peptidase IV (3.4.14.5 from EC) (DPP IV). DPP IV is an enzyme that removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Saccharomyces cerevisiae (Baker's yeast) vacuolar dipeptidyl aminopeptidases A and B (DPAP A and DPAP B), encoded by the STE13 and DAP2 genes respectively. DPAP A is responsible for the proteolytic maturation of the alpha-factor precursor. Acylamino-acid-releasing enzyme (3.4.19.1 from EC) (acyl-peptide hydrolase). This enzyme catalyses the hydrolysis of the amino-terminal peptide bond of an N-acetylated protein to generate a N-acetylated amino acid and a protein with a free amino-terminus. These proteins belong to MEROPS peptidase families S9A, S9B and S9C.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 2AJ8_D 1ORV_D 2AJB_C 2BUC_D 1ORW_D 2AJC_D 2AJD_C 2BUA_A 2HU8_B 3O4J_B ....
Probab=94.13 E-value=0.056 Score=46.46 Aligned_cols=39 Identities=21% Similarity=0.244 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHhCCCccCeEEEEeeChhhHHHHHhhH
Q 024663 147 ARVFQAVMEDLMAKGMKNAQNAVLSGCSAGGLTSILHCD 185 (264)
Q Consensus 147 ~~n~~avl~~L~~~gl~~a~~VllsG~SAGGlga~~~~d 185 (264)
..-+.+++++|.++..-++++|.+.|.|+||+-|.+-+-
T Consensus 45 ~~D~~~~i~~l~~~~~iD~~ri~i~G~S~GG~~a~~~~~ 83 (213)
T PF00326_consen 45 VDDVVAAIEYLIKQYYIDPDRIGIMGHSYGGYLALLAAT 83 (213)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEEEEEEETHHHHHHHHHHH
T ss_pred hhhHHHHHHHHhccccccceeEEEEcccccccccchhhc
Confidence 344667788998877789999999999999999987655
No 8
>PF10340 DUF2424: Protein of unknown function (DUF2424); InterPro: IPR019436 Sterol homeostasis in eukaryotic cells relies on the reciprocal interconversion of free sterols and steryl esters. In Saccharomyces cerevisiae (Baker's yeast) sterol acetylation requires the acetyltransferase Atf2, whereas deacetylation requires Say1, a membrane-anchored deacetylase with a putative active site in the ER lumen. Lack of Say1 results in the secretion of acetylated sterols into the culture medium, indicating that the substrate specificity of Say1 determines whether acetylated sterols are secreted from the cells or whether they are deacetylated and retained. In S. cerevisiae cells lacking Say1 or Atf2 are sensitive against the plant-derived allylbenzene eugenol and both Say1 and Atf2 affect pregnenolone toxicity, indicating that lipid acetylation acts as a detoxification pathway []. Homologues of Say1 are present in the mammalian genome and can functionally substitute for Say1 in yeast demonstrating that part of this pathway has been evolutionarily conserved [].
Probab=92.42 E-value=0.9 Score=44.18 Aligned_cols=109 Identities=19% Similarity=0.260 Sum_probs=62.1
Q ss_pred eEEEecC-C--CCCCccEEEEeeccccccCchhhhcccCCCCCCccccccccccccccCCCCCCCCCccCceeEEEecCC
Q 024663 49 AYHFDKG-F--GAGINNWLVHIEGGGWCNNVTTCLERKKTRLGSSKQMVKVVAFSGMLSNKQKFNPDFYNWNRIKVRYCD 125 (264)
Q Consensus 49 ~y~~~~g-~--g~~s~k~lI~leGGG~C~d~~tC~~r~~t~lGSs~~~~~~~~~~Gils~~~~~NP~F~nwN~V~vpYCd 125 (264)
+|++.+. . ...++..|||+=|||++-....+.-.... ...-.+. + . .++.+-|=-
T Consensus 107 s~Wlvk~P~~~~pk~DpVlIYlHGGGY~l~~~p~qi~~L~------------~i~~~l~-~------~---SILvLDYsL 164 (374)
T PF10340_consen 107 SYWLVKAPNRFKPKSDPVLIYLHGGGYFLGTTPSQIEFLL------------NIYKLLP-E------V---SILVLDYSL 164 (374)
T ss_pred eEEEEeCCcccCCCCCcEEEEEcCCeeEecCCHHHHHHHH------------HHHHHcC-C------C---eEEEEeccc
Confidence 3777763 1 23468999999999999876555321110 0011121 0 1 566666632
Q ss_pred CCccCCCcccccCCCceeEehHHHHHHHHHHHHHhCCCccCeEEEEeeChhhHHHHHhhHHHHh
Q 024663 126 GASFTGDVEAVNPANNLHFRGARVFQAVMEDLMAKGMKNAQNAVLSGCSAGGLTSILHCDNFRA 189 (264)
Q Consensus 126 Gd~~~Gd~~~~~~~~~l~frG~~n~~avl~~L~~~gl~~a~~VllsG~SAGGlga~~~~d~v~~ 189 (264)
-.+ ++....+| ++ ..-+-++.++|.+. ...++|+|.|.||||-=++.-..+++.
T Consensus 165 t~~--~~~~~~yP-tQ-----L~qlv~~Y~~Lv~~--~G~~nI~LmGDSAGGnL~Ls~LqyL~~ 218 (374)
T PF10340_consen 165 TSS--DEHGHKYP-TQ-----LRQLVATYDYLVES--EGNKNIILMGDSAGGNLALSFLQYLKK 218 (374)
T ss_pred ccc--ccCCCcCc-hH-----HHHHHHHHHHHHhc--cCCCeEEEEecCccHHHHHHHHHHHhh
Confidence 210 01111122 11 12345557788831 235899999999999988888888886
No 9
>PRK10566 esterase; Provisional
Probab=92.01 E-value=0.38 Score=41.90 Aligned_cols=54 Identities=24% Similarity=0.370 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHhCCCccCeEEEEeeChhhHHHHHhhHHHHhhCCCCceEEEeeccccc
Q 024663 149 VFQAVMEDLMAKGMKNAQNAVLSGCSAGGLTSILHCDNFRALFPVGTKVKCFADAGYF 206 (264)
Q Consensus 149 n~~avl~~L~~~gl~~a~~VllsG~SAGGlga~~~~d~v~~~lp~~a~v~~l~DSG~f 206 (264)
-+.++++++.+++.-+.++|.|.|.|+||.-++..+ ...|.-..+..+..++++
T Consensus 90 ~~~~~~~~l~~~~~~~~~~i~v~G~S~Gg~~al~~~----~~~~~~~~~~~~~~~~~~ 143 (249)
T PRK10566 90 EFPTLRAAIREEGWLLDDRLAVGGASMGGMTALGIM----ARHPWVKCVASLMGSGYF 143 (249)
T ss_pred HHHHHHHHHHhcCCcCccceeEEeecccHHHHHHHH----HhCCCeeEEEEeeCcHHH
Confidence 355678888765556789999999999999988443 234422223334455544
No 10
>PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A ....
Probab=90.43 E-value=0.55 Score=39.86 Aligned_cols=43 Identities=23% Similarity=0.213 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHh--CC-CccCeEEEEeeChhhHHHHHhhHHHHhh
Q 024663 148 RVFQAVMEDLMAK--GM-KNAQNAVLSGCSAGGLTSILHCDNFRAL 190 (264)
Q Consensus 148 ~n~~avl~~L~~~--gl-~~a~~VllsG~SAGGlga~~~~d~v~~~ 190 (264)
.-+.++++|++++ .+ -++++|+|+|+||||.=+..-+-..++.
T Consensus 50 ~D~~~a~~~l~~~~~~~~~d~~~i~l~G~SAGg~la~~~~~~~~~~ 95 (211)
T PF07859_consen 50 EDVKAAYRWLLKNADKLGIDPERIVLIGDSAGGHLALSLALRARDR 95 (211)
T ss_dssp HHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHT
T ss_pred cccccceeeeccccccccccccceEEeecccccchhhhhhhhhhhh
Confidence 3467778888873 11 3588999999999998888888777775
No 11
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=87.52 E-value=0.99 Score=35.40 Aligned_cols=40 Identities=28% Similarity=0.434 Sum_probs=29.9
Q ss_pred ehHHHHHHHHHHHHHhCCCccCeEEEEeeChhhHHHHHhhH
Q 024663 145 RGARVFQAVMEDLMAKGMKNAQNAVLSGCSAGGLTSILHCD 185 (264)
Q Consensus 145 rG~~n~~avl~~L~~~gl~~a~~VllsG~SAGGlga~~~~d 185 (264)
.+...++.+++++.. ...++++|+|.|.|+||..+..-+.
T Consensus 41 ~~~~~~~~~~~~~~~-~~~~~~~i~l~G~S~Gg~~a~~~~~ 80 (145)
T PF12695_consen 41 DGADAVERVLADIRA-GYPDPDRIILIGHSMGGAIAANLAA 80 (145)
T ss_dssp HHSHHHHHHHHHHHH-HHCTCCEEEEEEETHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHh-hcCCCCcEEEEEEccCcHHHHHHhh
Confidence 334478888888754 2248899999999999987766444
No 12
>COG0657 Aes Esterase/lipase [Lipid metabolism]
Probab=87.21 E-value=1.2 Score=40.75 Aligned_cols=42 Identities=21% Similarity=0.140 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHhC--C-CccCeEEEEeeChhhHHHHHhhHHHHhh
Q 024663 149 VFQAVMEDLMAKG--M-KNAQNAVLSGCSAGGLTSILHCDNFRAL 190 (264)
Q Consensus 149 n~~avl~~L~~~g--l-~~a~~VllsG~SAGGlga~~~~d~v~~~ 190 (264)
-+.+++.|+.++. + -++++|+|+|+||||.=+..-+...++.
T Consensus 132 d~~~a~~~l~~~~~~~g~dp~~i~v~GdSAGG~La~~~a~~~~~~ 176 (312)
T COG0657 132 DAYAAYRWLRANAAELGIDPSRIAVAGDSAGGHLALALALAARDR 176 (312)
T ss_pred HHHHHHHHHHhhhHhhCCCccceEEEecCcccHHHHHHHHHHHhc
Confidence 3677888888632 3 3589999999999999999999999986
No 13
>PF10503 Esterase_phd: Esterase PHB depolymerase
Probab=87.17 E-value=2.9 Score=37.61 Aligned_cols=40 Identities=18% Similarity=0.349 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHhCCCccCeEEEEeeChhhHHHHHhhHHHHhhCC
Q 024663 149 VFQAVMEDLMAKGMKNAQNAVLSGCSAGGLTSILHCDNFRALFP 192 (264)
Q Consensus 149 n~~avl~~L~~~gl~~a~~VllsG~SAGGlga~~~~d~v~~~lp 192 (264)
.+.++++++.++.--++++|.++|.|+||.-|. .+.-.+|
T Consensus 80 ~i~~lv~~v~~~~~iD~~RVyv~G~S~Gg~ma~----~la~~~p 119 (220)
T PF10503_consen 80 FIAALVDYVAARYNIDPSRVYVTGLSNGGMMAN----VLACAYP 119 (220)
T ss_pred hHHHHHHhHhhhcccCCCceeeEEECHHHHHHH----HHHHhCC
Confidence 477888988874445889999999999996664 4444566
No 14
>TIGR01840 esterase_phb esterase, PHB depolymerase family. This model describes a subfamily among lipases of the ab-hydrolase family. This subfamily includes bacterial depolymerases for poly(3-hydroxybutyrate) (PHB) and related polyhydroxyalkanoates (PHA), as well as acetyl xylan esterases, feruloyl esterases, and others from fungi.
Probab=86.85 E-value=0.98 Score=39.07 Aligned_cols=37 Identities=16% Similarity=0.249 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHhCCCccCeEEEEeeChhhHHHHHhh
Q 024663 148 RVFQAVMEDLMAKGMKNAQNAVLSGCSAGGLTSILHC 184 (264)
Q Consensus 148 ~n~~avl~~L~~~gl~~a~~VllsG~SAGGlga~~~~ 184 (264)
..++.+++++.++.--++++|+|.|.|+||..++..+
T Consensus 77 ~~~~~~i~~~~~~~~id~~~i~l~G~S~Gg~~a~~~a 113 (212)
T TIGR01840 77 ESLHQLIDAVKANYSIDPNRVYVTGLSAGGGMTAVLG 113 (212)
T ss_pred HHHHHHHHHHHHhcCcChhheEEEEECHHHHHHHHHH
Confidence 3467788888864334668999999999999876644
No 15
>PLN02408 phospholipase A1
Probab=86.70 E-value=3.9 Score=39.67 Aligned_cols=64 Identities=14% Similarity=0.226 Sum_probs=41.5
Q ss_pred HHHHHHhCCCc-cCeEEEEeeChhhHHHHHhhHHHHhhCCCCceEEEeeccccccccCCCCCchhHHHHHHH
Q 024663 154 MEDLMAKGMKN-AQNAVLSGCSAGGLTSILHCDNFRALFPVGTKVKCFADAGYFINAKDVSGASHIEQFYAQ 224 (264)
Q Consensus 154 l~~L~~~gl~~-a~~VllsG~SAGGlga~~~~d~v~~~lp~~a~v~~l~DSG~fld~~~~~g~~~~~~~~~~ 224 (264)
+..|++ ..++ ..+|+++|+|-||-=|.+.+.+++..++....|.++.=+++= -|+..+.++++.
T Consensus 188 I~~ll~-~y~~~~~sI~vTGHSLGGALAtLaA~dl~~~~~~~~~V~v~tFGsPR------VGN~~Fa~~~~~ 252 (365)
T PLN02408 188 IARLLQ-SYGDEPLSLTITGHSLGAALATLTAYDIKTTFKRAPMVTVISFGGPR------VGNRSFRRQLEK 252 (365)
T ss_pred HHHHHH-hcCCCCceEEEeccchHHHHHHHHHHHHHHhcCCCCceEEEEcCCCC------cccHHHHHHHHh
Confidence 334443 2343 347999999999999999999999887643345555544432 255555566654
No 16
>PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A ....
Probab=86.41 E-value=3.2 Score=32.94 Aligned_cols=56 Identities=23% Similarity=0.435 Sum_probs=33.6
Q ss_pred cCeEEEEeeChhhHHHHHhhHHHHhhCC-CCceEEEeeccccccccCCCCCchhHHHHHHHHH
Q 024663 165 AQNAVLSGCSAGGLTSILHCDNFRALFP-VGTKVKCFADAGYFINAKDVSGASHIEQFYAQVV 226 (264)
Q Consensus 165 a~~VllsG~SAGGlga~~~~d~v~~~lp-~~a~v~~l~DSG~fld~~~~~g~~~~~~~~~~~~ 226 (264)
..+|+++|+|-||-=|.+-+-++.+..+ ...+++++.=+++-+ |...+...++...
T Consensus 63 ~~~i~itGHSLGGalA~l~a~~l~~~~~~~~~~~~~~~fg~P~~------~~~~~~~~~~~~~ 119 (140)
T PF01764_consen 63 DYSIVITGHSLGGALASLAAADLASHGPSSSSNVKCYTFGAPRV------GNSAFAKWYDSLF 119 (140)
T ss_dssp TSEEEEEEETHHHHHHHHHHHHHHHCTTTSTTTEEEEEES-S--------BEHHHHHHHHHHT
T ss_pred CccchhhccchHHHHHHHHHHhhhhcccccccceeeeecCCccc------cCHHHHHHHHhhC
Confidence 3799999999999855555555555553 235667766554333 4445555555433
No 17
>cd00707 Pancreat_lipase_like Pancreatic lipase-like enzymes. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=85.25 E-value=2.5 Score=38.69 Aligned_cols=58 Identities=14% Similarity=0.174 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHhCCCccCeEEEEeeChhhHHHHHhhHHHHhhCCCCceEEEeecccccccc
Q 024663 149 VFQAVMEDLMAKGMKNAQNAVLSGCSAGGLTSILHCDNFRALFPVGTKVKCFADAGYFINA 209 (264)
Q Consensus 149 n~~avl~~L~~~gl~~a~~VllsG~SAGGlga~~~~d~v~~~lp~~a~v~~l~DSG~fld~ 209 (264)
.+.+.++.|.++.-...++|.|.|+|.||.-+..-+..+.+++. ++..+.=++.++..
T Consensus 95 ~la~~l~~L~~~~g~~~~~i~lIGhSlGa~vAg~~a~~~~~~v~---~iv~LDPa~p~f~~ 152 (275)
T cd00707 95 ELAKFLDFLVDNTGLSLENVHLIGHSLGAHVAGFAGKRLNGKLG---RITGLDPAGPLFSG 152 (275)
T ss_pred HHHHHHHHHHHhcCCChHHEEEEEecHHHHHHHHHHHHhcCccc---eeEEecCCcccccC
Confidence 34556666665311246789999999999888877766555443 45555546655443
No 18
>PF00450 Peptidase_S10: Serine carboxypeptidase; InterPro: IPR001563 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S10 (clan SC). The type example is carboxypeptidase Y from Saccharomyces cerevisiae (Baker's yeast) []. All known carboxypeptidases are either metallo carboxypeptidases or serine carboxypeptidases (3.4.16.5 from EC and 3.4.16.6 from EC). The catalytic activity of the serine carboxypeptidases, like that of the trypsin family serine proteases, is provided by a charge relay system involving an aspartic acid residue hydrogen-bonded to a histidine, which is itself hydrogen-bonded to a serine []. The sequences surrounding the active site serine and histidine residues are highly conserved in all the serine carboxypeptidases.; GO: 0004185 serine-type carboxypeptidase activity, 0006508 proteolysis; PDB: 1AC5_A 1WHS_B 3SC2_B 1WHT_A 1BCR_A 1BCS_A 1GXS_A 1IVY_A 1WPX_A 1YSC_A ....
Probab=84.92 E-value=10 Score=35.69 Aligned_cols=128 Identities=14% Similarity=0.093 Sum_probs=68.0
Q ss_pred CCccEEEEeeccccccCchhhhcccCCCCCCccccccccccccccCCCCCCCCC--ccCceeEEE--ecCCCCccCCCcc
Q 024663 59 GINNWLVHIEGGGWCNNVTTCLERKKTRLGSSKQMVKVVAFSGMLSNKQKFNPD--FYNWNRIKV--RYCDGASFTGDVE 134 (264)
Q Consensus 59 ~s~k~lI~leGGG~C~d~~tC~~r~~t~lGSs~~~~~~~~~~Gils~~~~~NP~--F~nwN~V~v--pYCdGd~~~Gd~~ 134 (264)
..+-++|.|+||=-|.+..--. ..+|--.. ...+ ...-..||. -...|+||| |=-+|-|+.-+..
T Consensus 38 ~~~Pl~~wlnGGPG~SS~~g~f----~e~GP~~~-----~~~~--~~~l~~n~~sW~~~an~l~iD~PvGtGfS~~~~~~ 106 (415)
T PF00450_consen 38 EDDPLILWLNGGPGCSSMWGLF----GENGPFRI-----NPDG--PYTLEDNPYSWNKFANLLFIDQPVGTGFSYGNDPS 106 (415)
T ss_dssp CSS-EEEEEE-TTTB-THHHHH----CTTSSEEE-----ETTS--TSEEEE-TT-GGGTSEEEEE--STTSTT-EESSGG
T ss_pred CCccEEEEecCCceeccccccc----cccCceEE-----eecc--cccccccccccccccceEEEeecCceEEeeccccc
Confidence 4678999999998888765322 22331111 1000 011234441 124678998 5666666665443
Q ss_pred cccCCCceeEehHHHHHHHHHHHHHhCCC--ccCeEEEEeeChhhHHHHHhhHHHHhhCCC----CceEEEee
Q 024663 135 AVNPANNLHFRGARVFQAVMEDLMAKGMK--NAQNAVLSGCSAGGLTSILHCDNFRALFPV----GTKVKCFA 201 (264)
Q Consensus 135 ~~~~~~~l~frG~~n~~avl~~L~~~gl~--~a~~VllsG~SAGGlga~~~~d~v~~~lp~----~a~v~~l~ 201 (264)
. + -...---...+.+++..++.. ++ +...+.|+|.|-||.=+..-+.+|.+.-.+ ..+++.+.
T Consensus 107 ~-~-~~~~~~~a~~~~~fl~~f~~~--~p~~~~~~~yi~GESYgG~yvP~~a~~i~~~~~~~~~~~inLkGi~ 175 (415)
T PF00450_consen 107 D-Y-VWNDDQAAEDLYEFLQQFFQK--FPEYRSNPLYIAGESYGGHYVPALASYILQQNKKGDQPKINLKGIA 175 (415)
T ss_dssp G-G-S-SHHHHHHHHHHHHHHHHHH--SGGGTTSEEEEEEETTHHHHHHHHHHHHHHHTCC--STTSEEEEEE
T ss_pred c-c-cchhhHHHHHHHHHHHHhhhh--hhhccCCCEEEEccccccccchhhHHhhhhccccccccccccccce
Confidence 2 0 011111223344444444443 33 334799999999999988888888877643 45666654
No 19
>COG2939 Carboxypeptidase C (cathepsin A) [Amino acid transport and metabolism]
Probab=84.80 E-value=12 Score=37.91 Aligned_cols=139 Identities=15% Similarity=0.110 Sum_probs=79.9
Q ss_pred CeEEEecCCC-CCCccEEEEeeccccccCchhhhcccCCCCCCccccccccccccccCCCCCCCCCc--cCceeEEE--e
Q 024663 48 PAYHFDKGFG-AGINNWLVHIEGGGWCNNVTTCLERKKTRLGSSKQMVKVVAFSGMLSNKQKFNPDF--YNWNRIKV--R 122 (264)
Q Consensus 48 ~~y~~~~g~g-~~s~k~lI~leGGG~C~d~~tC~~r~~t~lGSs~~~~~~~~~~Gils~~~~~NP~F--~nwN~V~v--p 122 (264)
+.||...+.. ...+-+++.|.||--|-+..==. ..+| |..+.++ . +.....||.= .+-+.||| |
T Consensus 87 ~ffy~fe~~ndp~~rPvi~wlNGGPGcSS~~g~l----~elG-----P~rI~~~-~-~P~~~~NP~SW~~~adLvFiDqP 155 (498)
T COG2939 87 FFFYTFESPNDPANRPVIFWLNGGPGCSSVTGLL----GELG-----PKRIQSG-T-SPSYPDNPGSWLDFADLVFIDQP 155 (498)
T ss_pred EEEEEecCCCCCCCCceEEEecCCCChHhhhhhh----hhcC-----CeeeeCC-C-CCCCCCCccccccCCceEEEecC
Confidence 4566666632 23578999999999987754221 1223 1222211 1 2333368821 13468999 6
Q ss_pred cCCCCccC-CCccccc---CCCceeEehHHHHHHHHHHHHHhCCCccCeEEEEeeChhhHHHHHhhHHHHhh---CCCCc
Q 024663 123 YCDGASFT-GDVEAVN---PANNLHFRGARVFQAVMEDLMAKGMKNAQNAVLSGCSAGGLTSILHCDNFRAL---FPVGT 195 (264)
Q Consensus 123 YCdGd~~~-Gd~~~~~---~~~~l~frG~~n~~avl~~L~~~gl~~a~~VllsG~SAGGlga~~~~d~v~~~---lp~~a 195 (264)
-=||-+.+ |+.-..+ .+.-+ ....+-+++++-+ -.+...+.+|+|.|-||.=+..-+..|.+. +...+
T Consensus 156 vGTGfS~a~~~e~~~d~~~~~~D~----~~~~~~f~~~fp~-~~r~~~~~~L~GESYgg~yip~~A~~L~~~~~~~~~~~ 230 (498)
T COG2939 156 VGTGFSRALGDEKKKDFEGAGKDV----YSFLRLFFDKFPH-YARLLSPKFLAGESYGGHYIPVFAHELLEDNIALNGNV 230 (498)
T ss_pred cccCcccccccccccchhccchhH----HHHHHHHHHHHHH-HhhhcCceeEeeccccchhhHHHHHHHHHhccccCCce
Confidence 77777765 3322111 00111 2345556666654 456667899999999998888888888875 33344
Q ss_pred eEEEeec
Q 024663 196 KVKCFAD 202 (264)
Q Consensus 196 ~v~~l~D 202 (264)
.++-+.+
T Consensus 231 nlssvli 237 (498)
T COG2939 231 NLSSVLI 237 (498)
T ss_pred Eeeeeee
Confidence 5555544
No 20
>KOG1282 consensus Serine carboxypeptidases (lysosomal cathepsin A) [Posttranslational modification, protein turnover, chaperones; Amino acid transport and metabolism]
Probab=84.32 E-value=5.6 Score=39.72 Aligned_cols=146 Identities=14% Similarity=0.185 Sum_probs=87.4
Q ss_pred CCCCeEEEecCCC-CCCccEEEEeeccccccCchhhhcccCCCCCCccccccccccccccCCCCCCCCCccCc----eeE
Q 024663 45 GSPPAYHFDKGFG-AGINNWLVHIEGGGWCNNVTTCLERKKTRLGSSKQMVKVVAFSGMLSNKQKFNPDFYNW----NRI 119 (264)
Q Consensus 45 GSp~~y~~~~g~g-~~s~k~lI~leGGG~C~d~~tC~~r~~t~lGSs~~~~~~~~~~Gils~~~~~NP~F~nw----N~V 119 (264)
|..-.||+-+... ...+-+||.|.||--|-+..= ....+|-. .+...|- .-..|| +.| |++
T Consensus 56 ~~~LFYwf~eS~~~P~~dPlvLWLnGGPGCSSl~G----~~~E~GPf-----~v~~~G~---tL~~N~--ySWnk~aNiL 121 (454)
T KOG1282|consen 56 GRQLFYWFFESENNPETDPLVLWLNGGPGCSSLGG----LFEENGPF-----RVKYNGK---TLYLNP--YSWNKEANIL 121 (454)
T ss_pred CceEEEEEEEccCCCCCCCEEEEeCCCCCccchhh----hhhhcCCe-----EEcCCCC---cceeCC--ccccccccEE
Confidence 4555566666532 223559999999999988651 12334411 1112221 345666 345 567
Q ss_pred EE--ecCCCCccCCCcccccCCCceeEehHHHHHHHHHHHHHhCCC--ccCeEEEEeeChhhHHHHHhhHHHHhhCC---
Q 024663 120 KV--RYCDGASFTGDVEAVNPANNLHFRGARVFQAVMEDLMAKGMK--NAQNAVLSGCSAGGLTSILHCDNFRALFP--- 192 (264)
Q Consensus 120 ~v--pYCdGd~~~Gd~~~~~~~~~l~frG~~n~~avl~~L~~~gl~--~a~~VllsG~SAGGlga~~~~d~v~~~lp--- 192 (264)
|| |==+|-+++.+...-. ..-.-...++.+++.+|+.+ +| .-....|+|.|-+|.=...-++.|.+.=.
T Consensus 122 fLd~PvGvGFSYs~~~~~~~--~~D~~~A~d~~~FL~~wf~k--fPey~~~~fyI~GESYAG~YVP~La~~I~~~N~~~~ 197 (454)
T KOG1282|consen 122 FLDQPVGVGFSYSNTSSDYK--TGDDGTAKDNYEFLQKWFEK--FPEYKSNDFYIAGESYAGHYVPALAQEILKGNKKCC 197 (454)
T ss_pred EEecCCcCCccccCCCCcCc--CCcHHHHHHHHHHHHHHHHh--ChhhcCCCeEEecccccceehHHHHHHHHhcccccc
Confidence 77 6666667766653211 12223347899999999985 33 34579999999999888887888777532
Q ss_pred -CCceEEEeeccccccc
Q 024663 193 -VGTKVKCFADAGYFIN 208 (264)
Q Consensus 193 -~~a~v~~l~DSG~fld 208 (264)
+...++.+.=+=-.+|
T Consensus 198 ~~~iNLkG~~IGNg~td 214 (454)
T KOG1282|consen 198 KPNINLKGYAIGNGLTD 214 (454)
T ss_pred CCcccceEEEecCcccC
Confidence 1345565554333333
No 21
>PRK10115 protease 2; Provisional
Probab=83.66 E-value=0.87 Score=47.30 Aligned_cols=36 Identities=19% Similarity=0.199 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHhCCCccCeEEEEeeChhhHHHHH
Q 024663 147 ARVFQAVMEDLMAKGMKNAQNAVLSGCSAGGLTSIL 182 (264)
Q Consensus 147 ~~n~~avl~~L~~~gl~~a~~VllsG~SAGGlga~~ 182 (264)
..-+.++.++|.++|+-+++++.+.|.||||+-+..
T Consensus 505 ~~D~~a~~~~Lv~~g~~d~~rl~i~G~S~GG~l~~~ 540 (686)
T PRK10115 505 FNDYLDACDALLKLGYGSPSLCYGMGGSAGGMLMGV 540 (686)
T ss_pred HHHHHHHHHHHHHcCCCChHHeEEEEECHHHHHHHH
Confidence 445678889999999999999999999999985543
No 22
>PF00756 Esterase: Putative esterase; InterPro: IPR000801 This family contains several seemingly unrelated proteins, including human esterase D; mycobacterial antigen 85, which is responsible for the high affinity of mycobacteria to fibronectin; Corynebacterium glutamicum major secreted protein PS1; and hypothetical proteins from Escherichia coli, yeast, mycobacteria and Haemophilus influenzae.; PDB: 3LS2_A 1VA5_B 1DQZ_B 3HRH_A 1DQY_A 2GZR_A 2GZS_A 3GFF_A 1R88_A 3E4D_D ....
Probab=82.77 E-value=1.3 Score=38.69 Aligned_cols=50 Identities=18% Similarity=0.309 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHhCCCccCe-EEEEeeChhhHHHHHhhHHHHhhCCCCceEEEee
Q 024663 148 RVFQAVMEDLMAKGMKNAQN-AVLSGCSAGGLTSILHCDNFRALFPVGTKVKCFA 201 (264)
Q Consensus 148 ~n~~avl~~L~~~gl~~a~~-VllsG~SAGGlga~~~~d~v~~~lp~~a~v~~l~ 201 (264)
-+.+.++.++.+ .++.... ..|+|+|.||++|+..+-.--+.|. .+.+++
T Consensus 97 ~l~~el~p~i~~-~~~~~~~~~~i~G~S~GG~~Al~~~l~~Pd~F~---~~~~~S 147 (251)
T PF00756_consen 97 FLTEELIPYIEA-NYRTDPDRRAIAGHSMGGYGALYLALRHPDLFG---AVIAFS 147 (251)
T ss_dssp HHHTHHHHHHHH-HSSEEECCEEEEEETHHHHHHHHHHHHSTTTES---EEEEES
T ss_pred ehhccchhHHHH-hcccccceeEEeccCCCcHHHHHHHHhCccccc---cccccC
Confidence 355566666665 4553333 9999999999999975544334443 344444
No 23
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=81.98 E-value=2.1 Score=32.75 Aligned_cols=34 Identities=26% Similarity=0.473 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHh-CCCccCeEEEEeeChh-hHHH
Q 024663 147 ARVFQAVMEDLMAK-GMKNAQNAVLSGCSAG-GLTS 180 (264)
Q Consensus 147 ~~n~~avl~~L~~~-gl~~a~~VllsG~SAG-Glga 180 (264)
.++++.-+++.+++ .+..+++|++.|+|.| |+++
T Consensus 20 ~~~V~~qI~yvk~~~~~~GpK~VLViGaStGyGLAs 55 (78)
T PF12242_consen 20 ARNVENQIEYVKSQGKINGPKKVLVIGASTGYGLAS 55 (78)
T ss_dssp HHHHHHHHHHHHHC---TS-SEEEEES-SSHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCCceEEEEecCCcccHHH
Confidence 56888889998873 4677899999999998 5554
No 24
>PLN02802 triacylglycerol lipase
Probab=81.93 E-value=7.8 Score=39.24 Aligned_cols=52 Identities=19% Similarity=0.286 Sum_probs=36.5
Q ss_pred CeEEEEeeChhhHHHHHhhHHHHhhCCCCceEEEeeccccccccCCCCCchhHHHHHH
Q 024663 166 QNAVLSGCSAGGLTSILHCDNFRALFPVGTKVKCFADAGYFINAKDVSGASHIEQFYA 223 (264)
Q Consensus 166 ~~VllsG~SAGGlga~~~~d~v~~~lp~~a~v~~l~DSG~fld~~~~~g~~~~~~~~~ 223 (264)
.+|+|||+|-||-=|.+.+.+++...+....|.++.=++. --|+..+.++++
T Consensus 330 ~sI~VTGHSLGGALAtLaA~dL~~~~~~~~pV~vyTFGsP------RVGN~aFA~~~~ 381 (509)
T PLN02802 330 LSITVTGHSLGAALALLVADELATCVPAAPPVAVFSFGGP------RVGNRAFADRLN 381 (509)
T ss_pred ceEEEeccchHHHHHHHHHHHHHHhCCCCCceEEEEcCCC------CcccHHHHHHHH
Confidence 4799999999999999999999988774435566554443 224455455553
No 25
>PLN02454 triacylglycerol lipase
Probab=79.83 E-value=11 Score=37.26 Aligned_cols=64 Identities=16% Similarity=0.170 Sum_probs=39.4
Q ss_pred HHHHHHhCCCcc-CeEEEEeeChhhHHHHHhhHHHHhhCC--CCceEEEeeccccccccCCCCCchhHHHHHHH
Q 024663 154 MEDLMAKGMKNA-QNAVLSGCSAGGLTSILHCDNFRALFP--VGTKVKCFADAGYFINAKDVSGASHIEQFYAQ 224 (264)
Q Consensus 154 l~~L~~~gl~~a-~~VllsG~SAGGlga~~~~d~v~~~lp--~~a~v~~l~DSG~fld~~~~~g~~~~~~~~~~ 224 (264)
++.|++ ..++. .+|++||+|-||.=|.+.+.+++.... ....|.++.=+++= -|+..+.++++.
T Consensus 216 V~~l~~-~Yp~~~~sI~vTGHSLGGALAtLaA~di~~~g~~~~~~~V~~~TFGsPR------VGN~~Fa~~~~~ 282 (414)
T PLN02454 216 IKELLE-RYKDEKLSIVLTGHSLGASLATLAAFDIVENGVSGADIPVTAIVFGSPQ------VGNKEFNDRFKE 282 (414)
T ss_pred HHHHHH-hCCCCCceEEEEecCHHHHHHHHHHHHHHHhcccccCCceEEEEeCCCc------ccCHHHHHHHHh
Confidence 344444 23433 369999999999999999988876532 23345555544322 255555566654
No 26
>cd00519 Lipase_3 Lipase (class 3). Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=79.71 E-value=6.9 Score=34.21 Aligned_cols=39 Identities=23% Similarity=0.343 Sum_probs=29.6
Q ss_pred cCeEEEEeeChhhHHHHHhhHHHHhhCCCCceEEEeeccc
Q 024663 165 AQNAVLSGCSAGGLTSILHCDNFRALFPVGTKVKCFADAG 204 (264)
Q Consensus 165 a~~VllsG~SAGGlga~~~~d~v~~~lp~~a~v~~l~DSG 204 (264)
..+++++|+|-||.=|.+.+-+++...+ ..++.++.=++
T Consensus 127 ~~~i~vtGHSLGGaiA~l~a~~l~~~~~-~~~i~~~tFg~ 165 (229)
T cd00519 127 DYKIIVTGHSLGGALASLLALDLRLRGP-GSDVTVYTFGQ 165 (229)
T ss_pred CceEEEEccCHHHHHHHHHHHHHHhhCC-CCceEEEEeCC
Confidence 4689999999999988888888887763 34566665444
No 27
>PRK13604 luxD acyl transferase; Provisional
Probab=79.12 E-value=4.4 Score=38.38 Aligned_cols=52 Identities=13% Similarity=0.056 Sum_probs=36.8
Q ss_pred hHHHHHHHHHHHHHhCCCccCeEEEEeeChhhHHHHHhhHHHHhhCCCCceEEEeecccccc
Q 024663 146 GARVFQAVMEDLMAKGMKNAQNAVLSGCSAGGLTSILHCDNFRALFPVGTKVKCFADAGYFI 207 (264)
Q Consensus 146 G~~n~~avl~~L~~~gl~~a~~VllsG~SAGGlga~~~~d~v~~~lp~~a~v~~l~DSG~fl 207 (264)
|..-++++++|++++ ..+++.|.|+|.||.-+++-+. .-+ ++ .++.||++.-
T Consensus 91 g~~Dl~aaid~lk~~---~~~~I~LiG~SmGgava~~~A~----~~~--v~-~lI~~sp~~~ 142 (307)
T PRK13604 91 GKNSLLTVVDWLNTR---GINNLGLIAASLSARIAYEVIN----EID--LS-FLITAVGVVN 142 (307)
T ss_pred cHHHHHHHHHHHHhc---CCCceEEEEECHHHHHHHHHhc----CCC--CC-EEEEcCCccc
Confidence 578899999999874 3467999999999988654332 111 11 2677887653
No 28
>COG3509 LpqC Poly(3-hydroxybutyrate) depolymerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=78.01 E-value=18 Score=34.40 Aligned_cols=33 Identities=18% Similarity=0.255 Sum_probs=24.8
Q ss_pred HHHHHHHHHHhCCCccCeEEEEeeChhhHHHHH
Q 024663 150 FQAVMEDLMAKGMKNAQNAVLSGCSAGGLTSIL 182 (264)
Q Consensus 150 ~~avl~~L~~~gl~~a~~VllsG~SAGGlga~~ 182 (264)
++++++.|..+.=-++.+|.++|-|+||.=+..
T Consensus 128 lr~lva~l~~~~gidp~RVyvtGlS~GG~Ma~~ 160 (312)
T COG3509 128 LRALVAKLVNEYGIDPARVYVTGLSNGGRMANR 160 (312)
T ss_pred HHHHHHHHHHhcCcCcceEEEEeeCcHHHHHHH
Confidence 677788888643346789999999999964443
No 29
>PF07819 PGAP1: PGAP1-like protein; InterPro: IPR012908 The sequences found in this family are similar to PGAP1 (Q765A7 from SWISSPROT). This is an endoplasmic reticulum membrane protein with a catalytic serine-containing motif that is conserved in a number of lipases. PGAP1 functions as a GPI inositol-deacylase; this deacylation is important for the efficient transport of GPI-anchored proteins from the endoplasmic reticulum to the Golgi body [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006505 GPI anchor metabolic process, 0006886 intracellular protein transport, 0031227 intrinsic to endoplasmic reticulum membrane
Probab=77.17 E-value=13 Score=33.13 Aligned_cols=34 Identities=18% Similarity=0.317 Sum_probs=23.9
Q ss_pred HHHHHHHHHHh---CCCccCeEEEEeeChhhHHHHHh
Q 024663 150 FQAVMEDLMAK---GMKNAQNAVLSGCSAGGLTSILH 183 (264)
Q Consensus 150 ~~avl~~L~~~---gl~~a~~VllsG~SAGGlga~~~ 183 (264)
+...++.+++. ....+++|+|.|+|.||+-+..-
T Consensus 66 ~~~~i~~i~~~~~~~~~~~~~vilVgHSmGGlvar~~ 102 (225)
T PF07819_consen 66 LAEAIKYILELYKSNRPPPRSVILVGHSMGGLVARSA 102 (225)
T ss_pred HHHHHHHHHHhhhhccCCCCceEEEEEchhhHHHHHH
Confidence 44445555542 35788999999999999866543
No 30
>cd00741 Lipase Lipase. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation", the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=77.05 E-value=7 Score=31.93 Aligned_cols=28 Identities=21% Similarity=0.135 Sum_probs=22.1
Q ss_pred ccCeEEEEeeChhhHHHHHhhHHHHhhC
Q 024663 164 NAQNAVLSGCSAGGLTSILHCDNFRALF 191 (264)
Q Consensus 164 ~a~~VllsG~SAGGlga~~~~d~v~~~l 191 (264)
...+++++|+|.||-=|.+-+-+++...
T Consensus 26 p~~~i~v~GHSlGg~lA~l~a~~~~~~~ 53 (153)
T cd00741 26 PDYKIHVTGHSLGGALAGLAGLDLRGRG 53 (153)
T ss_pred CCCeEEEEEcCHHHHHHHHHHHHHHhcc
Confidence 4578999999999977777677777654
No 31
>cd07224 Pat_like Patatin-like phospholipase. Patatin-like phospholipase. This family consists of various patatin glycoproteins from plants. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of lipid acyl hydrolase, catalysing the cleavage of fatty acids from membrane lipids. Members of this family have been found also in vertebrates.
Probab=76.86 E-value=3 Score=37.37 Aligned_cols=32 Identities=31% Similarity=0.495 Sum_probs=24.1
Q ss_pred HHHHHHHhCCCccCeEEEEeeChhhHHHHHhhH
Q 024663 153 VMEDLMAKGMKNAQNAVLSGCSAGGLTSILHCD 185 (264)
Q Consensus 153 vl~~L~~~gl~~a~~VllsG~SAGGlga~~~~d 185 (264)
|++.|.++++.. +...++|+|||++-+..++-
T Consensus 17 Vl~~L~e~gi~~-~~~~i~G~SAGAl~aa~~as 48 (233)
T cd07224 17 VLSLLIEAGVIN-ETTPLAGASAGSLAAACSAS 48 (233)
T ss_pred HHHHHHHcCCCC-CCCEEEEEcHHHHHHHHHHc
Confidence 478888777652 34689999999998877654
No 32
>TIGR02821 fghA_ester_D S-formylglutathione hydrolase. This model describes a protein family from bacteria, yeast, and human, with a conserved critical role in formaldehyde detoxification as S-formylglutathione hydrolase (EC 3.1.2.12). Members in eukaryotes such as the human protein are better known as esterase D (EC 3.1.1.1), an enzyme with broad specificity, although S-formylglutathione hydrolase has now been demonstrated as well.
Probab=76.72 E-value=3.6 Score=37.21 Aligned_cols=23 Identities=17% Similarity=0.339 Sum_probs=19.6
Q ss_pred ccCeEEEEeeChhhHHHHHhhHH
Q 024663 164 NAQNAVLSGCSAGGLTSILHCDN 186 (264)
Q Consensus 164 ~a~~VllsG~SAGGlga~~~~d~ 186 (264)
+.+++.|+|+|+||..|+..+-.
T Consensus 136 ~~~~~~~~G~S~GG~~a~~~a~~ 158 (275)
T TIGR02821 136 DGERQGITGHSMGGHGALVIALK 158 (275)
T ss_pred CCCceEEEEEChhHHHHHHHHHh
Confidence 45789999999999999887654
No 33
>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []. Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....
Probab=75.59 E-value=10 Score=32.34 Aligned_cols=52 Identities=17% Similarity=0.184 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHhCCCccCeEEEEeeChhhHHHHHhhHHHHhhCCCCceEEEeecc
Q 024663 149 VFQAVMEDLMAKGMKNAQNAVLSGCSAGGLTSILHCDNFRALFPVGTKVKCFADA 203 (264)
Q Consensus 149 n~~avl~~L~~~gl~~a~~VllsG~SAGGlga~~~~d~v~~~lp~~a~v~~l~DS 203 (264)
..+..++.+++. .++ ...+|.|.|.||+=|+-=+..+.+. ...+...++.|+
T Consensus 51 la~~y~~~I~~~-~~~-gp~~L~G~S~Gg~lA~E~A~~Le~~-G~~v~~l~liD~ 102 (229)
T PF00975_consen 51 LASRYAEAIRAR-QPE-GPYVLAGWSFGGILAFEMARQLEEA-GEEVSRLILIDS 102 (229)
T ss_dssp HHHHHHHHHHHH-TSS-SSEEEEEETHHHHHHHHHHHHHHHT-T-SESEEEEESC
T ss_pred HHHHHHHHhhhh-CCC-CCeeehccCccHHHHHHHHHHHHHh-hhccCceEEecC
Confidence 344445555542 122 2799999999999999888888887 435556667775
No 34
>COG2272 PnbA Carboxylesterase type B [Lipid metabolism]
Probab=75.58 E-value=3.3 Score=41.62 Aligned_cols=38 Identities=21% Similarity=0.164 Sum_probs=31.3
Q ss_pred ehHHHHHHHHHHHHHh--CC-CccCeEEEEeeChhhHHHHH
Q 024663 145 RGARVFQAVMEDLMAK--GM-KNAQNAVLSGCSAGGLTSIL 182 (264)
Q Consensus 145 rG~~n~~avl~~L~~~--gl-~~a~~VllsG~SAGGlga~~ 182 (264)
-|..-..++|+|..++ .| +++++|-|.|.|||+..+..
T Consensus 156 ~Gl~DqilALkWV~~NIe~FGGDp~NVTl~GeSAGa~si~~ 196 (491)
T COG2272 156 LGLLDQILALKWVRDNIEAFGGDPQNVTLFGESAGAASILT 196 (491)
T ss_pred ccHHHHHHHHHHHHHHHHHhCCCccceEEeeccchHHHHHH
Confidence 4677788999999973 45 58999999999999977654
No 35
>cd07198 Patatin Patatin-like phospholipase. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes PNPLA (1-9), TGL (3-5), ExoU-like, and SDP1-like subfamilies. There are some additional hypothetical proteins included in this family.
Probab=75.10 E-value=3.7 Score=34.59 Aligned_cols=30 Identities=27% Similarity=0.430 Sum_probs=23.4
Q ss_pred HHHHHHHhCCCccCeEEEEeeChhhHHHHHhhH
Q 024663 153 VMEDLMAKGMKNAQNAVLSGCSAGGLTSILHCD 185 (264)
Q Consensus 153 vl~~L~~~gl~~a~~VllsG~SAGGlga~~~~d 185 (264)
|++.|.++++. --+++|+|||++-+.+++-
T Consensus 16 vl~aL~e~gi~---~d~v~GtSaGAi~aa~~a~ 45 (172)
T cd07198 16 VAKALRERGPL---IDIIAGTSAGAIVAALLAS 45 (172)
T ss_pred HHHHHHHcCCC---CCEEEEECHHHHHHHHHHc
Confidence 57777776666 5689999999998877654
No 36
>PLN02324 triacylglycerol lipase
Probab=74.29 E-value=13 Score=36.68 Aligned_cols=38 Identities=21% Similarity=0.288 Sum_probs=26.9
Q ss_pred HHHHHHHHhCCCcc-CeEEEEeeChhhHHHHHhhHHHHhh
Q 024663 152 AVMEDLMAKGMKNA-QNAVLSGCSAGGLTSILHCDNFRAL 190 (264)
Q Consensus 152 avl~~L~~~gl~~a-~~VllsG~SAGGlga~~~~d~v~~~ 190 (264)
+-+..|++ ..++. .+|++||+|-||-=|.+.+-++...
T Consensus 201 ~eV~~L~~-~Yp~e~~sItvTGHSLGGALAtLaA~dl~~~ 239 (415)
T PLN02324 201 GELKRLLE-LYKNEEISITFTGHSLGAVMSVLSAADLVYG 239 (415)
T ss_pred HHHHHHHH-HCCCCCceEEEecCcHHHHHHHHHHHHHHHh
Confidence 33445554 34543 4799999999998888888877653
No 37
>PRK10439 enterobactin/ferric enterobactin esterase; Provisional
Probab=73.19 E-value=7.6 Score=37.96 Aligned_cols=29 Identities=28% Similarity=0.471 Sum_probs=21.7
Q ss_pred CccCeEEEEeeChhhHHHHHhhHHHHhhC
Q 024663 163 KNAQNAVLSGCSAGGLTSILHCDNFRALF 191 (264)
Q Consensus 163 ~~a~~VllsG~SAGGlga~~~~d~v~~~l 191 (264)
.++++.+|+|.|.||++|+.-+=.--+.|
T Consensus 285 ~d~~~~~IaG~S~GGl~AL~~al~~Pd~F 313 (411)
T PRK10439 285 DDADRTVVAGQSFGGLAALYAGLHWPERF 313 (411)
T ss_pred CCccceEEEEEChHHHHHHHHHHhCcccc
Confidence 57889999999999999986544333333
No 38
>PF08840 BAAT_C: BAAT / Acyl-CoA thioester hydrolase C terminal; InterPro: IPR014940 Acyl-CoA thioesterases are a group of enzymes that catalyse the hydrolysis of acyl-CoAs to the free fatty acid and coenzyme A (CoASH), providing the potential to regulate intracellular levels of acyl-CoAs, free fatty acids and CoASH. Bile acid-CoA:amino acid N-acetyltransferase (BAAT) is involved in bile acid metabolism and may also act as an acyl-CoA thioesterase that regulates intracellular levels of free fatty acids []. This entry represents a catalytic domain is found at the C terminus of acyl-CoA thioester hydrolases and bile acid-CoA:amino acid N-acetyltransferases. ; PDB: 3K2I_B 3HLK_B.
Probab=72.18 E-value=8.5 Score=33.85 Aligned_cols=55 Identities=16% Similarity=0.251 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHhCCCccCeEEEEeeChhhHHHHHhhHHHHhhCCCCceEEEeecccccc
Q 024663 149 VFQAVMEDLMAKGMKNAQNAVLSGCSAGGLTSILHCDNFRALFPVGTKVKCFADAGYFI 207 (264)
Q Consensus 149 n~~avl~~L~~~gl~~a~~VllsG~SAGGlga~~~~d~v~~~lp~~a~v~~l~DSG~fl 207 (264)
-++.+++||.++.--++++|-|.|.|-||--|++ ++..+|.=..|..++.|++..
T Consensus 5 yfe~Ai~~L~~~p~v~~~~Igi~G~SkGaelALl----lAs~~~~i~avVa~~ps~~~~ 59 (213)
T PF08840_consen 5 YFEEAIDWLKSHPEVDPDKIGIIGISKGAELALL----LASRFPQISAVVAISPSSVVF 59 (213)
T ss_dssp HHHHHHHHHHCSTTB--SSEEEEEETHHHHHHHH----HHHHSSSEEEEEEES--SB--
T ss_pred HHHHHHHHHHhCCCCCCCCEEEEEECHHHHHHHH----HHhcCCCccEEEEeCCceeEe
Confidence 3688999999754456789999999999977765 556677333466666776554
No 39
>PLN03037 lipase class 3 family protein; Provisional
Probab=72.07 E-value=18 Score=36.91 Aligned_cols=55 Identities=13% Similarity=0.180 Sum_probs=38.1
Q ss_pred ccCeEEEEeeChhhHHHHHhhHHHHhhCCCCceEEEeeccccccccCCCCCchhHHHHHHH
Q 024663 164 NAQNAVLSGCSAGGLTSILHCDNFRALFPVGTKVKCFADAGYFINAKDVSGASHIEQFYAQ 224 (264)
Q Consensus 164 ~a~~VllsG~SAGGlga~~~~d~v~~~lp~~a~v~~l~DSG~fld~~~~~g~~~~~~~~~~ 224 (264)
...+|+|+|+|-||-=|.+++-+++..+|....|.++.=+++ --|+..+.++++.
T Consensus 316 e~~SItVTGHSLGGALAtLaA~DIa~~~p~~~~VtvyTFGsP------RVGN~aFA~~~~~ 370 (525)
T PLN03037 316 EEVSLTITGHSLGGALALLNAYEAARSVPALSNISVISFGAP------RVGNLAFKEKLNE 370 (525)
T ss_pred CcceEEEeccCHHHHHHHHHHHHHHHhCCCCCCeeEEEecCC------CccCHHHHHHHHh
Confidence 456799999999999999999999988874324555554432 3355555555543
No 40
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=71.86 E-value=4.1 Score=42.39 Aligned_cols=92 Identities=17% Similarity=0.253 Sum_probs=52.8
Q ss_pred hHHHHHHHHHHHHHhCCCccCeEEEEeeChhhH--HHHHhh--HHHHhhC---CCCceEEEeeccccccccCCCC--Cch
Q 024663 146 GARVFQAVMEDLMAKGMKNAQNAVLSGCSAGGL--TSILHC--DNFRALF---PVGTKVKCFADAGYFINAKDVS--GAS 216 (264)
Q Consensus 146 G~~n~~avl~~L~~~gl~~a~~VllsG~SAGGl--ga~~~~--d~v~~~l---p~~a~v~~l~DSG~fld~~~~~--g~~ 216 (264)
...-+-|+-+.|.+.|+...++++..|.||||+ ||++|- +.++..+ |=---+.-|.|-..-|-...+. |++
T Consensus 507 Tf~DFIa~a~~Lv~~g~~~~~~i~a~GGSAGGmLmGav~N~~P~lf~~iiA~VPFVDvltTMlD~slPLT~~E~~EWGNP 586 (682)
T COG1770 507 TFTDFIAAARHLVKEGYTSPDRIVAIGGSAGGMLMGAVANMAPDLFAGIIAQVPFVDVLTTMLDPSLPLTVTEWDEWGNP 586 (682)
T ss_pred cHHHHHHHHHHHHHcCcCCccceEEeccCchhHHHHHHHhhChhhhhheeecCCccchhhhhcCCCCCCCccchhhhCCc
Confidence 356678889999988999999999999999996 555442 2233333 2000012233443333333322 444
Q ss_pred hHHHHHHHHHH---hcccc-CCchh
Q 024663 217 HIEQFYAQVVA---THVHT-LFLTL 237 (264)
Q Consensus 217 ~~~~~~~~~~~---~~~~~-~~lp~ 237 (264)
.-..+|+-+.. ..|++ +..|.
T Consensus 587 ~d~e~y~yikSYSPYdNV~a~~YP~ 611 (682)
T COG1770 587 LDPEYYDYIKSYSPYDNVEAQPYPA 611 (682)
T ss_pred CCHHHHHHHhhcCchhccccCCCCc
Confidence 44555655554 35664 35554
No 41
>cd07222 Pat_PNPLA4 Patatin-like phospholipase domain containing protein 4. PNPLA4, also known as GS2 (gene sequence-2), shows both lipase and transacylation activities. GS2 lipase is expressed in various tissues, predominantly in muscle and adipocytes tissue. It is also expressed in keratinocytes and shows retinyl ester hydrolase, acylglycerol, TG hydrolase, and PLA2 activity. This family includes patatin-like proteins: GS2 from mammals, PNPLA4 (Patatin-like phospholipase domain-containing protein 4), and iPLA2-eta (Calcium-independent phospholipase A2) from Homo sapiens.
Probab=71.52 E-value=4.4 Score=36.66 Aligned_cols=32 Identities=25% Similarity=0.373 Sum_probs=23.7
Q ss_pred HHHHHHHhCCCccCeE-EEEeeChhhHHHHHhh
Q 024663 153 VMEDLMAKGMKNAQNA-VLSGCSAGGLTSILHC 184 (264)
Q Consensus 153 vl~~L~~~gl~~a~~V-llsG~SAGGlga~~~~ 184 (264)
|++.|.++|..--+++ .++|+|||++-+...+
T Consensus 17 Vl~~L~e~g~~l~~~~~~i~GtSaGAl~aa~~a 49 (246)
T cd07222 17 AAKALLRHGKKLLKRVKRFAGASAGSLVAAVLL 49 (246)
T ss_pred HHHHHHHcCchhhccCCEEEEECHHHHHHHHHh
Confidence 4777777666433344 7999999999888774
No 42
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=70.35 E-value=4.9 Score=41.14 Aligned_cols=37 Identities=19% Similarity=0.331 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHhCCCccCeEEEEeeChhhHHHHHhh
Q 024663 148 RVFQAVMEDLMAKGMKNAQNAVLSGCSAGGLTSILHC 184 (264)
Q Consensus 148 ~n~~avl~~L~~~gl~~a~~VllsG~SAGGlga~~~~ 184 (264)
+-+.+.+++|.+.++-++++|.++|.|.||+-|+.-.
T Consensus 455 ~D~~~~~~~l~~~~~~d~~ri~i~G~SyGGymtl~~~ 491 (620)
T COG1506 455 EDLIAAVDALVKLPLVDPERIGITGGSYGGYMTLLAA 491 (620)
T ss_pred HHHHHHHHHHHhCCCcChHHeEEeccChHHHHHHHHH
Confidence 4456667777777788888999999999999887643
No 43
>TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily.
Probab=68.62 E-value=9.6 Score=34.37 Aligned_cols=36 Identities=11% Similarity=0.138 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHhCCCccCeEEEEeeChhhHHHHHhh
Q 024663 148 RVFQAVMEDLMAKGMKNAQNAVLSGCSAGGLTSILHC 184 (264)
Q Consensus 148 ~n~~avl~~L~~~gl~~a~~VllsG~SAGGlga~~~~ 184 (264)
.-+.+++++|.+ ..+..++|+|.|.|.||+-+...+
T Consensus 83 ~d~~~~~~~l~~-~~~g~~~i~l~G~S~Gg~~a~~~a 118 (274)
T TIGR03100 83 ADIAAAIDAFRE-AAPHLRRIVAWGLCDAASAALLYA 118 (274)
T ss_pred HHHHHHHHHHHh-hCCCCCcEEEEEECHHHHHHHHHh
Confidence 457888888875 344457899999999999887764
No 44
>PLN02442 S-formylglutathione hydrolase
Probab=68.02 E-value=7.6 Score=35.46 Aligned_cols=22 Identities=23% Similarity=0.268 Sum_probs=18.7
Q ss_pred ccCeEEEEeeChhhHHHHHhhH
Q 024663 164 NAQNAVLSGCSAGGLTSILHCD 185 (264)
Q Consensus 164 ~a~~VllsG~SAGGlga~~~~d 185 (264)
+.++++|+|.|+||++|+..+-
T Consensus 141 ~~~~~~i~G~S~GG~~a~~~a~ 162 (283)
T PLN02442 141 DTSRASIFGHSMGGHGALTIYL 162 (283)
T ss_pred CCCceEEEEEChhHHHHHHHHH
Confidence 5688999999999999987554
No 45
>PF03583 LIP: Secretory lipase ; InterPro: IPR005152 This entry represents a family of secreted lipases. Family members include the LIP lipases from Candida albicans, which are expressed and secreted during the infection cycle of these pathogens [].; GO: 0004806 triglyceride lipase activity, 0016042 lipid catabolic process
Probab=67.96 E-value=10 Score=35.07 Aligned_cols=64 Identities=19% Similarity=0.242 Sum_probs=40.3
Q ss_pred ehHHHHHHHHHHHHH-------hCCCccCeEEEEeeChhhHHHHHhhHHHHhhCCCCce--EEEeecccccccc
Q 024663 145 RGARVFQAVMEDLMA-------KGMKNAQNAVLSGCSAGGLTSILHCDNFRALFPVGTK--VKCFADAGYFINA 209 (264)
Q Consensus 145 rG~~n~~avl~~L~~-------~gl~~a~~VllsG~SAGGlga~~~~d~v~~~lp~~a~--v~~l~DSG~fld~ 209 (264)
.|...-.++||-+.. .|++...+|.+.|.|=||.+|..- -.++..+-++.+ ++..+=.|+-.|.
T Consensus 43 ~~~~~a~avLD~vRAA~~~~~~~gl~~~~~v~l~GySqGG~Aa~~A-A~l~~~YApeL~~~l~Gaa~gg~~~dl 115 (290)
T PF03583_consen 43 NGRSEAYAVLDAVRAARNLPPKLGLSPSSRVALWGYSQGGQAALWA-AELAPSYAPELNRDLVGAAAGGPPADL 115 (290)
T ss_pred CcHhHHHHHHHHHHHHHhcccccCCCCCCCEEEEeeCccHHHHHHH-HHHhHHhCcccccceeEEeccCCccCH
Confidence 344444555554442 245566899999999999999654 456666544666 6666555554443
No 46
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=67.94 E-value=14 Score=34.13 Aligned_cols=66 Identities=21% Similarity=0.253 Sum_probs=43.5
Q ss_pred CCccCeEEEEeeChhhHHHHHhhHHHHhhCC------CCceEEEee-ccccccccCCCCCchhHHHHHHHHHH
Q 024663 162 MKNAQNAVLSGCSAGGLTSILHCDNFRALFP------VGTKVKCFA-DAGYFINAKDVSGASHIEQFYAQVVA 227 (264)
Q Consensus 162 l~~a~~VllsG~SAGGlga~~~~d~v~~~lp------~~a~v~~l~-DSG~fld~~~~~g~~~~~~~~~~~~~ 227 (264)
...++.|+++|||-||+|--+--..-++-+- +-.+..-+. |+|.+.-.-|++-......+-..+..
T Consensus 4 ~~~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L~~~~gl~~~kLDV~~~~~V~~v~~evr~ 76 (289)
T KOG1209|consen 4 QSQPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLAIQFGLKPYKLDVSKPEEVVTVSGEVRA 76 (289)
T ss_pred ccCCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhhHHHhhCCeeEEeccCChHHHHHHHHHHhh
Confidence 3678899999999999997765555444221 001122233 89988777777766666666666665
No 47
>cd07218 Pat_iPLA2 Calcium-independent phospholipase A2; Classified as Group IVA-1 PLA2. Calcium-independent phospholipase A2; otherwise known as Group IVA-1 PLA2. It contains the lipase consensus sequence (Gly-X-Ser-X-Gly);mutagenesis experiments confirm the role of this serine as a nucleophile. Some members of this group show triacylglycerol lipase activity (EC 3:1:1:3). Members include iPLA-1, iPLA-2, and iPLA-3 from Aedes aegypti and show acylglycerol transacylase/lipase activity. Also includes putative iPLA2-eta from Pediculus humanus corporis which shows patatin-like phospholipase activity.
Probab=67.62 E-value=6.8 Score=35.64 Aligned_cols=31 Identities=29% Similarity=0.176 Sum_probs=20.8
Q ss_pred HHHHHHHhCCCccCeEEEEeeChhhHHHHHhh
Q 024663 153 VMEDLMAKGMKNAQNAVLSGCSAGGLTSILHC 184 (264)
Q Consensus 153 vl~~L~~~gl~~a~~VllsG~SAGGlga~~~~ 184 (264)
|++.|.+++.....+ .++|+|||++-+...+
T Consensus 18 Vl~aL~e~g~~~~~d-~i~GtSAGAl~aa~~a 48 (245)
T cd07218 18 VAVCLKKYAPHLLLN-KISGASAGALAACCLL 48 (245)
T ss_pred HHHHHHHhCcccCCC-eEEEEcHHHHHHHHHH
Confidence 466777666322222 3999999999888754
No 48
>PF02230 Abhydrolase_2: Phospholipase/Carboxylesterase; InterPro: IPR003140 This entry represents the alpha/beta hydrolase domain found in phospholipases [], carboxylesterases [] and thioesterases.; GO: 0016787 hydrolase activity; PDB: 3U0V_A 1AUR_A 1AUO_B 1FJ2_B 3CN9_A 3CN7_A.
Probab=67.48 E-value=11 Score=32.70 Aligned_cols=35 Identities=17% Similarity=0.349 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHhCCCccCeEEEEeeChhhHHHHHhh
Q 024663 149 VFQAVMEDLMAKGMKNAQNAVLSGCSAGGLTSILHC 184 (264)
Q Consensus 149 n~~avl~~L~~~gl~~a~~VllsG~SAGGlga~~~~ 184 (264)
.+.++++.+.+.+ -++++|+|.|.|-||.-|+.-+
T Consensus 89 ~l~~li~~~~~~~-i~~~ri~l~GFSQGa~~al~~~ 123 (216)
T PF02230_consen 89 RLDELIDEEVAYG-IDPSRIFLGGFSQGAAMALYLA 123 (216)
T ss_dssp HHHHHHHHHHHTT---GGGEEEEEETHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-CChhheehhhhhhHHHHHHHHH
Confidence 3455566555544 6678999999999998887654
No 49
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=67.30 E-value=13 Score=32.46 Aligned_cols=36 Identities=28% Similarity=0.494 Sum_probs=22.3
Q ss_pred HHHHHHHHHhCCCccCeEEEEeeChhhHHHHHhhHHHHhhCC
Q 024663 151 QAVMEDLMAKGMKNAQNAVLSGCSAGGLTSILHCDNFRALFP 192 (264)
Q Consensus 151 ~avl~~L~~~gl~~a~~VllsG~SAGGlga~~~~d~v~~~lp 192 (264)
.+.++.+.++ . .++.++|.|+|.||+-|.. ++++++
T Consensus 46 ~~~l~~~i~~-~-~~~~~~liGSSlGG~~A~~----La~~~~ 81 (187)
T PF05728_consen 46 IAQLEQLIEE-L-KPENVVLIGSSLGGFYATY----LAERYG 81 (187)
T ss_pred HHHHHHHHHh-C-CCCCeEEEEEChHHHHHHH----HHHHhC
Confidence 3444555542 2 2333999999999976654 555554
No 50
>PF12740 Chlorophyllase2: Chlorophyllase enzyme; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=66.86 E-value=11 Score=35.05 Aligned_cols=39 Identities=21% Similarity=0.235 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHhCC---------CccCeEEEEeeChhhHHHHHhhHHH
Q 024663 148 RVFQAVMEDLMAKGM---------KNAQNAVLSGCSAGGLTSILHCDNF 187 (264)
Q Consensus 148 ~n~~avl~~L~~~gl---------~~a~~VllsG~SAGGlga~~~~d~v 187 (264)
+-++++++||.+ ++ .+.+++-|+|+|+||-.++..+-..
T Consensus 65 ~~~~~vi~Wl~~-~L~~~l~~~v~~D~s~l~l~GHSrGGk~Af~~al~~ 112 (259)
T PF12740_consen 65 ASAAEVIDWLAK-GLESKLPLGVKPDFSKLALAGHSRGGKVAFAMALGN 112 (259)
T ss_pred HHHHHHHHHHHh-cchhhccccccccccceEEeeeCCCCHHHHHHHhhh
Confidence 357888999886 33 2557999999999999888665554
No 51
>cd07204 Pat_PNPLA_like Patatin-like phospholipase domain containing protein family. Members of this family share a patain domain, initially discovered in potato tubers. PNPLA protein members show non-specific hydrolase activity with a variety of substrates such as triacylglycerol, phospholipids, and retinylesters. It contains the lipase consensus sequence (Gly-X-Ser-X-Gly). Nomenclature of PNPLA family could be misleading as some of the mammalian members of this family show hydrolase, but no phospholipase activity.
Probab=66.74 E-value=6.9 Score=35.33 Aligned_cols=32 Identities=25% Similarity=0.315 Sum_probs=22.7
Q ss_pred HHHHHHHhCCCccCe-EEEEeeChhhHHHHHhh
Q 024663 153 VMEDLMAKGMKNAQN-AVLSGCSAGGLTSILHC 184 (264)
Q Consensus 153 vl~~L~~~gl~~a~~-VllsG~SAGGlga~~~~ 184 (264)
|++.|.+++.....+ -.++|+|||++-+...+
T Consensus 17 Vl~~L~e~g~~l~~~~~~i~GtSAGAl~aa~~a 49 (243)
T cd07204 17 VASALREHAPRLLQNARRIAGASAGAIVAAVVL 49 (243)
T ss_pred HHHHHHHcCcccccCCCEEEEEcHHHHHHHHHH
Confidence 477777766543333 48999999999887654
No 52
>PLN02298 hydrolase, alpha/beta fold family protein
Probab=65.79 E-value=19 Score=32.84 Aligned_cols=51 Identities=16% Similarity=0.130 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHhCCCccCeEEEEeeChhhHHHHHhhHHHHhhCCCCceEEEeec
Q 024663 148 RVFQAVMEDLMAKGMKNAQNAVLSGCSAGGLTSILHCDNFRALFPVGTKVKCFAD 202 (264)
Q Consensus 148 ~n~~avl~~L~~~gl~~a~~VllsG~SAGGlga~~~~d~v~~~lp~~a~v~~l~D 202 (264)
+-+.++++.|....-....+++|.|+|.||.-++..+ ...|..++-.++..
T Consensus 116 ~D~~~~i~~l~~~~~~~~~~i~l~GhSmGG~ia~~~a----~~~p~~v~~lvl~~ 166 (330)
T PLN02298 116 EDCLSFFNSVKQREEFQGLPRFLYGESMGGAICLLIH----LANPEGFDGAVLVA 166 (330)
T ss_pred HHHHHHHHHHHhcccCCCCCEEEEEecchhHHHHHHH----hcCcccceeEEEec
Confidence 4577788887752111234699999999998776433 34554444333333
No 53
>KOG1516 consensus Carboxylesterase and related proteins [General function prediction only]
Probab=65.74 E-value=10 Score=37.65 Aligned_cols=36 Identities=19% Similarity=0.158 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHh--CC-CccCeEEEEeeChhhHHHHHhh
Q 024663 149 VFQAVMEDLMAK--GM-KNAQNAVLSGCSAGGLTSILHC 184 (264)
Q Consensus 149 n~~avl~~L~~~--gl-~~a~~VllsG~SAGGlga~~~~ 184 (264)
-..+.|+|+.++ .+ +++++|.|.|.||||..+-++.
T Consensus 175 Dq~~AL~wv~~~I~~FGGdp~~vTl~G~saGa~~v~~l~ 213 (545)
T KOG1516|consen 175 DQLLALRWVKDNIPSFGGDPKNVTLFGHSAGAASVSLLT 213 (545)
T ss_pred HHHHHHHHHHHHHHhcCCCCCeEEEEeechhHHHHHHHh
Confidence 466778888863 44 5999999999999998885543
No 54
>PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A ....
Probab=65.17 E-value=25 Score=28.32 Aligned_cols=38 Identities=18% Similarity=0.274 Sum_probs=25.5
Q ss_pred CeEEEEeeChhhHHHHHhhHHHHhhCCCCceEEEeecccccc
Q 024663 166 QNAVLSGCSAGGLTSILHCDNFRALFPVGTKVKCFADAGYFI 207 (264)
Q Consensus 166 ~~VllsG~SAGGlga~~~~d~v~~~lp~~a~v~~l~DSG~fl 207 (264)
++++|.|+|.||.-+...+. ..|..++-.++.++....
T Consensus 66 ~~~~lvG~S~Gg~~a~~~a~----~~p~~v~~~vl~~~~~~~ 103 (228)
T PF12697_consen 66 KKVILVGHSMGGMIALRLAA----RYPDRVKGLVLLSPPPPL 103 (228)
T ss_dssp SSEEEEEETHHHHHHHHHHH----HSGGGEEEEEEESESSSH
T ss_pred cccccccccccccccccccc----ccccccccceeecccccc
Confidence 68999999999977766553 355444444556655543
No 55
>PLN02209 serine carboxypeptidase
Probab=62.77 E-value=82 Score=31.18 Aligned_cols=140 Identities=14% Similarity=0.112 Sum_probs=69.0
Q ss_pred CccccC---CCCCeEEEecCC-CCCCccEEEEeeccccccCchhhhcccCCCCCCccccccccccccccCCCCCCCCCc-
Q 024663 39 GAVCLD---GSPPAYHFDKGF-GAGINNWLVHIEGGGWCNNVTTCLERKKTRLGSSKQMVKVVAFSGMLSNKQKFNPDF- 113 (264)
Q Consensus 39 gA~ClD---GSp~~y~~~~g~-g~~s~k~lI~leGGG~C~d~~tC~~r~~t~lGSs~~~~~~~~~~Gils~~~~~NP~F- 113 (264)
|-+..+ |+...|++-+.. ....+-++|+|+||--|-+..-... .+|--..-++. ..|-. ..-..||.-
T Consensus 42 Gy~~v~~~~~~~lf~~f~es~~~~~~~Pl~lWlnGGPG~SS~~g~f~----e~GP~~~~~~~--~~~~~-~~l~~n~~sW 114 (437)
T PLN02209 42 GYIGIGEEENVQFFYYFIKSDKNPQEDPLIIWLNGGPGCSCLSGLFF----ENGPLALKNKV--YNGSV-PSLVSTTYSW 114 (437)
T ss_pred EEEEecCCCCeEEEEEEEecCCCCCCCCEEEEECCCCcHHHhhhHHH----hcCCceeccCC--CCCCc-ccceeCCCch
Confidence 444553 333445554432 2235689999999988876543322 22211100000 00000 112345511
Q ss_pred -cCceeEEE--ecCCCCccCCCcccccCCCceeEehHHHHHHHHHHHHHhCCCc--cCeEEEEeeChhhHHHHHhhHHHH
Q 024663 114 -YNWNRIKV--RYCDGASFTGDVEAVNPANNLHFRGARVFQAVMEDLMAKGMKN--AQNAVLSGCSAGGLTSILHCDNFR 188 (264)
Q Consensus 114 -~nwN~V~v--pYCdGd~~~Gd~~~~~~~~~l~frG~~n~~avl~~L~~~gl~~--a~~VllsG~SAGGlga~~~~d~v~ 188 (264)
...|++|| |-=+|-++.-+... +...+ -....+++.+..++.. +++ ...+.|+|.|-||.=+..-+.+|.
T Consensus 115 ~~~anllfiDqPvGtGfSy~~~~~~-~~~~~--~~a~~~~~fl~~f~~~--~p~~~~~~~yi~GESYaG~yvP~~a~~i~ 189 (437)
T PLN02209 115 TKTANIIFLDQPVGSGFSYSKTPIE-RTSDT--SEVKKIHEFLQKWLIK--HPQFLSNPFYVVGDSYSGMIVPALVHEIS 189 (437)
T ss_pred hhcCcEEEecCCCCCCccCCCCCCC-ccCCH--HHHHHHHHHHHHHHHh--CccccCCCEEEEecCcCceehHHHHHHHH
Confidence 13467777 55555555433211 11100 0124455555555543 332 346999999999977776677776
Q ss_pred hh
Q 024663 189 AL 190 (264)
Q Consensus 189 ~~ 190 (264)
+.
T Consensus 190 ~~ 191 (437)
T PLN02209 190 KG 191 (437)
T ss_pred hh
Confidence 53
No 56
>PLN00021 chlorophyllase
Probab=62.77 E-value=13 Score=34.89 Aligned_cols=38 Identities=24% Similarity=0.156 Sum_probs=27.0
Q ss_pred HHHHHHHHHHh---C-----CCccCeEEEEeeChhhHHHHHhhHHH
Q 024663 150 FQAVMEDLMAK---G-----MKNAQNAVLSGCSAGGLTSILHCDNF 187 (264)
Q Consensus 150 ~~avl~~L~~~---g-----l~~a~~VllsG~SAGGlga~~~~d~v 187 (264)
.+++++|+.+. - -.+.+++.|.|+|+||..++.-+-..
T Consensus 102 ~~~~~~~l~~~l~~~l~~~~~~d~~~v~l~GHS~GG~iA~~lA~~~ 147 (313)
T PLN00021 102 AAAVINWLSSGLAAVLPEGVRPDLSKLALAGHSRGGKTAFALALGK 147 (313)
T ss_pred HHHHHHHHHhhhhhhcccccccChhheEEEEECcchHHHHHHHhhc
Confidence 55667777641 1 13458899999999999988776443
No 57
>cd07205 Pat_PNPLA6_PNPLA7_NTE1_like Patatin-like phospholipase domain containing protein 6, protein 7, and fungal NTE1. Patatin-like phospholipase domain containing protein 6 (PNPLA6) and protein 7 (PNPLA7) are included in this family. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. PNPLA7 is an insulin-regulated phospholipase that is homologus to Neuropathy Target Esterase (NTE or PNPLA6) and is also known as NTE-related esterase (NRE). Human NRE is predominantly expressed in prostate, white adipose, and panc
Probab=62.51 E-value=17 Score=30.42 Aligned_cols=31 Identities=29% Similarity=0.477 Sum_probs=22.7
Q ss_pred HHHHHHHHHhCCCccCeEEEEeeChhhHHHHHhh
Q 024663 151 QAVMEDLMAKGMKNAQNAVLSGCSAGGLTSILHC 184 (264)
Q Consensus 151 ~avl~~L~~~gl~~a~~VllsG~SAGGlga~~~~ 184 (264)
--+++.|.++++. . -+++|.|||++-+.+.+
T Consensus 16 ~Gvl~~L~~~~~~-~--d~i~GtSaGal~a~~~a 46 (175)
T cd07205 16 IGVLKALEEAGIP-I--DIVSGTSAGAIVGALYA 46 (175)
T ss_pred HHHHHHHHHcCCC-e--eEEEEECHHHHHHHHHH
Confidence 3457777776653 3 38999999999886665
No 58
>PLN02310 triacylglycerol lipase
Probab=62.48 E-value=42 Score=33.17 Aligned_cols=52 Identities=15% Similarity=0.192 Sum_probs=35.5
Q ss_pred cCeEEEEeeChhhHHHHHhhHHHHhhCCCCceEEEeeccccccccCCCCCchhHHHHHH
Q 024663 165 AQNAVLSGCSAGGLTSILHCDNFRALFPVGTKVKCFADAGYFINAKDVSGASHIEQFYA 223 (264)
Q Consensus 165 a~~VllsG~SAGGlga~~~~d~v~~~lp~~a~v~~l~DSG~fld~~~~~g~~~~~~~~~ 223 (264)
..+|++||+|-||-=|.+.+.+++...| ...|.++.=+++-+ |+..+.++++
T Consensus 208 ~~sI~vTGHSLGGALAtLaA~dl~~~~~-~~~v~vyTFGsPRV------GN~~Fa~~~~ 259 (405)
T PLN02310 208 EVSLTVTGHSLGGALALLNAYEAATTIP-DLFVSVISFGAPRV------GNIAFKEKLN 259 (405)
T ss_pred cceEEEEcccHHHHHHHHHHHHHHHhCc-CcceeEEEecCCCc------ccHHHHHHHH
Confidence 3579999999999888889988887766 44455555554333 4444444444
No 59
>KOG4627 consensus Kynurenine formamidase [Amino acid transport and metabolism]
Probab=62.43 E-value=8.8 Score=35.16 Aligned_cols=28 Identities=18% Similarity=0.207 Sum_probs=22.6
Q ss_pred HHHHHHhCCCccCeEEEEeeChhhHHHHH
Q 024663 154 MEDLMAKGMKNAQNAVLSGCSAGGLTSIL 182 (264)
Q Consensus 154 l~~L~~~gl~~a~~VllsG~SAGGlga~~ 182 (264)
++|+++ -+++++.++++|+|||+-=+..
T Consensus 125 v~filk-~~~n~k~l~~gGHSaGAHLa~q 152 (270)
T KOG4627|consen 125 VNFILK-YTENTKVLTFGGHSAGAHLAAQ 152 (270)
T ss_pred HHHHHH-hcccceeEEEcccchHHHHHHH
Confidence 677775 6899999999999999854443
No 60
>TIGR03101 hydr2_PEP hydrolase, ortholog 2, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 1, TIGR03100) of the same superfamily.
Probab=60.88 E-value=23 Score=32.60 Aligned_cols=61 Identities=18% Similarity=0.195 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHhCCCccCeEEEEeeChhhHHHHHhhHHHHhhCCCCceEEEeeccccccccCCCCCchhHHHHHH
Q 024663 149 VFQAVMEDLMAKGMKNAQNAVLSGCSAGGLTSILHCDNFRALFPVGTKVKCFADAGYFINAKDVSGASHIEQFYA 223 (264)
Q Consensus 149 n~~avl~~L~~~gl~~a~~VllsG~SAGGlga~~~~d~v~~~lp~~a~v~~l~DSG~fld~~~~~g~~~~~~~~~ 223 (264)
-+.+++++|.+. ..++|+|.|.|.||.=++..+ ...|..++ ++.+..+-++|...++.|.+
T Consensus 85 Dv~~ai~~L~~~---~~~~v~LvG~SmGG~vAl~~A----~~~p~~v~-------~lVL~~P~~~g~~~l~~~lr 145 (266)
T TIGR03101 85 DVAAAYRWLIEQ---GHPPVTLWGLRLGALLALDAA----NPLAAKCN-------RLVLWQPVVSGKQQLQQFLR 145 (266)
T ss_pred HHHHHHHHHHhc---CCCCEEEEEECHHHHHHHHHH----HhCccccc-------eEEEeccccchHHHHHHHHH
Confidence 355667777753 256899999999998777543 33443221 12222344566666666544
No 61
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=59.79 E-value=13 Score=31.89 Aligned_cols=38 Identities=24% Similarity=0.231 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHhCCCccCeEEEEeeChhhHHHHHhh
Q 024663 147 ARVFQAVMEDLMAKGMKNAQNAVLSGCSAGGLTSILHC 184 (264)
Q Consensus 147 ~~n~~avl~~L~~~gl~~a~~VllsG~SAGGlga~~~~ 184 (264)
...+++.+++|.++.-...++|.+.|.|.||.-++..+
T Consensus 79 ~~~~~aa~~~l~~~~~~~~~kig~vGfc~GG~~a~~~a 116 (218)
T PF01738_consen 79 AADLQAAVDYLRAQPEVDPGKIGVVGFCWGGKLALLLA 116 (218)
T ss_dssp HHHHHHHHHHHHCTTTCEEEEEEEEEETHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccCCCcEEEEEEecchHHhhhhh
Confidence 44566778888864334789999999999998887644
No 62
>TIGR03230 lipo_lipase lipoprotein lipase. Members of this protein family are lipoprotein lipase (EC 3.1.1.34), a eukaryotic triacylglycerol lipase active in plasma and similar to pancreatic and hepatic triacylglycerol lipases (EC 3.1.1.3). It is also called clearing factor. It cleaves chylomicron and VLDL triacylglycerols; it also has phospholipase A-1 activity.
Probab=59.51 E-value=24 Score=35.07 Aligned_cols=55 Identities=13% Similarity=0.026 Sum_probs=34.5
Q ss_pred HHHHHHHHHHH-hCCCccCeEEEEeeChhhHHHHHhhHHHHhhCCCCc-eEEEeeccccccc
Q 024663 149 VFQAVMEDLMA-KGMKNAQNAVLSGCSAGGLTSILHCDNFRALFPVGT-KVKCFADAGYFIN 208 (264)
Q Consensus 149 n~~avl~~L~~-~gl~~a~~VllsG~SAGGlga~~~~d~v~~~lp~~a-~v~~l~DSG~fld 208 (264)
.+.+++++|.+ .++ ..++|.|.|+|.||.-|..-+.. .|..+ ++.++.=+|+++.
T Consensus 102 ~la~lI~~L~~~~gl-~l~~VhLIGHSLGAhIAg~ag~~----~p~rV~rItgLDPAgP~F~ 158 (442)
T TIGR03230 102 DVAKFVNWMQEEFNY-PWDNVHLLGYSLGAHVAGIAGSL----TKHKVNRITGLDPAGPTFE 158 (442)
T ss_pred HHHHHHHHHHHhhCC-CCCcEEEEEECHHHHHHHHHHHh----CCcceeEEEEEcCCCCccc
Confidence 45566777764 243 56889999999999877765443 34322 4555555665543
No 63
>PLN02965 Probable pheophorbidase
Probab=59.05 E-value=25 Score=30.71 Aligned_cols=38 Identities=18% Similarity=0.246 Sum_probs=23.7
Q ss_pred CCccCeEEEEeeChhhHHHHHhhHHHHhhCCCCceEEEeecc
Q 024663 162 MKNAQNAVLSGCSAGGLTSILHCDNFRALFPVGTKVKCFADA 203 (264)
Q Consensus 162 l~~a~~VllsG~SAGGlga~~~~d~v~~~lp~~a~v~~l~DS 203 (264)
++..++++|.|+|.||.=+...+ ...|..++-.++.++
T Consensus 68 l~~~~~~~lvGhSmGG~ia~~~a----~~~p~~v~~lvl~~~ 105 (255)
T PLN02965 68 LPPDHKVILVGHSIGGGSVTEAL----CKFTDKISMAIYVAA 105 (255)
T ss_pred cCCCCCEEEEecCcchHHHHHHH----HhCchheeEEEEEcc
Confidence 33336899999999997555433 245655544444454
No 64
>PRK11460 putative hydrolase; Provisional
Probab=58.05 E-value=19 Score=31.82 Aligned_cols=34 Identities=18% Similarity=0.218 Sum_probs=23.2
Q ss_pred HHHHHHHHHHhCCCccCeEEEEeeChhhHHHHHh
Q 024663 150 FQAVMEDLMAKGMKNAQNAVLSGCSAGGLTSILH 183 (264)
Q Consensus 150 ~~avl~~L~~~gl~~a~~VllsG~SAGGlga~~~ 183 (264)
+.+.++++.++.-.+.++|+|.|.|.||.-++..
T Consensus 87 l~~~i~~~~~~~~~~~~~i~l~GfS~Gg~~al~~ 120 (232)
T PRK11460 87 FIETVRYWQQQSGVGASATALIGFSQGAIMALEA 120 (232)
T ss_pred HHHHHHHHHHhcCCChhhEEEEEECHHHHHHHHH
Confidence 3345556554322346799999999999888753
No 65
>PTZ00472 serine carboxypeptidase (CBP1); Provisional
Probab=57.93 E-value=73 Score=31.63 Aligned_cols=113 Identities=17% Similarity=0.205 Sum_probs=57.0
Q ss_pred CCccEEEEeeccccccCchhhhcccCCCCCCccccccccccccccCCCCCCCCCccCc----eeEEEecC--CCCccCCC
Q 024663 59 GINNWLVHIEGGGWCNNVTTCLERKKTRLGSSKQMVKVVAFSGMLSNKQKFNPDFYNW----NRIKVRYC--DGASFTGD 132 (264)
Q Consensus 59 ~s~k~lI~leGGG~C~d~~tC~~r~~t~lGSs~~~~~~~~~~Gils~~~~~NP~F~nw----N~V~vpYC--dGd~~~Gd 132 (264)
..+-++|+|+||--|.+..-.. ..+|--. ++..+ ..-..|| +.| |+|||--= +|-++.-+
T Consensus 75 ~~~Pl~lwlnGGPG~ss~~G~f----~E~GP~~-----i~~~~---~~~~~n~--~sW~~~~~~l~iDqP~G~G~S~~~~ 140 (462)
T PTZ00472 75 PEAPVLLWMTGGPGCSSMFALL----AENGPCL-----MNETT---GDIYNNT--YSWNNEAYVIYVDQPAGVGFSYADK 140 (462)
T ss_pred CCCCEEEEECCCCcHHHHHhhh----ccCCCeE-----EeCCC---CceeECC--cccccccCeEEEeCCCCcCcccCCC
Confidence 3567999999998887653222 2333111 11110 1123455 334 55666432 33333321
Q ss_pred cccccCCCceeEehHHHHHHHHHHHHHhCCCc--cCeEEEEeeChhhHHHHHhhHHHHhh
Q 024663 133 VEAVNPANNLHFRGARVFQAVMEDLMAKGMKN--AQNAVLSGCSAGGLTSILHCDNFRAL 190 (264)
Q Consensus 133 ~~~~~~~~~l~frG~~n~~avl~~L~~~gl~~--a~~VllsG~SAGGlga~~~~d~v~~~ 190 (264)
.. .. .... .-.+.+..+|+..++ .++. ...+.|+|.|.||.=+...+.+|.+.
T Consensus 141 ~~--~~-~~~~-~~a~d~~~~l~~f~~-~~p~~~~~~~~i~GeSygG~y~p~~a~~i~~~ 195 (462)
T PTZ00472 141 AD--YD-HNES-EVSEDMYNFLQAFFG-SHEDLRANDLFVVGESYGGHYAPATAYRINMG 195 (462)
T ss_pred CC--CC-CChH-HHHHHHHHHHHHHHH-hCccccCCCEEEEeecchhhhHHHHHHHHHhh
Confidence 11 10 1111 112233334444343 2443 37899999999998888878887653
No 66
>PLN02211 methyl indole-3-acetate methyltransferase
Probab=56.61 E-value=33 Score=30.93 Aligned_cols=24 Identities=29% Similarity=0.493 Sum_probs=18.6
Q ss_pred CCccCeEEEEeeChhhHHHHHhhH
Q 024663 162 MKNAQNAVLSGCSAGGLTSILHCD 185 (264)
Q Consensus 162 l~~a~~VllsG~SAGGlga~~~~d 185 (264)
+...++|+|.|+|.||+-+...+.
T Consensus 83 l~~~~~v~lvGhS~GG~v~~~~a~ 106 (273)
T PLN02211 83 LPENEKVILVGHSAGGLSVTQAIH 106 (273)
T ss_pred cCCCCCEEEEEECchHHHHHHHHH
Confidence 333579999999999997766654
No 67
>PF06028 DUF915: Alpha/beta hydrolase of unknown function (DUF915); InterPro: IPR010315 This family consists of bacterial proteins of unknown function, which are hydrolase-like.; PDB: 3LP5_A 3FLE_A 3DS8_A.
Probab=55.69 E-value=26 Score=32.23 Aligned_cols=60 Identities=27% Similarity=0.266 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHHHHhCCCccCeEEEEeeChhhHHHHHhhHHH--HhhCCCCceEEEeecccccccc
Q 024663 146 GARVFQAVMEDLMAKGMKNAQNAVLSGCSAGGLTSILHCDNF--RALFPVGTKVKCFADAGYFINA 209 (264)
Q Consensus 146 G~~n~~avl~~L~~~gl~~a~~VllsG~SAGGlga~~~~d~v--~~~lp~~a~v~~l~DSG~fld~ 209 (264)
-.+=+++||..|.++ =.-+++=+.|+|.||++++...-.- ...+|+- -+++.=+|.|-..
T Consensus 85 qa~wl~~vl~~L~~~--Y~~~~~N~VGHSmGg~~~~~yl~~~~~~~~~P~l--~K~V~Ia~pfng~ 146 (255)
T PF06028_consen 85 QAKWLKKVLKYLKKK--YHFKKFNLVGHSMGGLSWTYYLENYGNDKNLPKL--NKLVTIAGPFNGI 146 (255)
T ss_dssp HHHHHHHHHHHHHHC--C--SEEEEEEETHHHHHHHHHHHHCTTGTTS-EE--EEEEEES--TTTT
T ss_pred HHHHHHHHHHHHHHh--cCCCEEeEEEECccHHHHHHHHHHhccCCCCccc--ceEEEeccccCcc
Confidence 345588899999873 3467899999999999998544332 2336632 2334445555433
No 68
>TIGR03695 menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase. This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase.
Probab=55.23 E-value=29 Score=28.38 Aligned_cols=23 Identities=22% Similarity=0.264 Sum_probs=18.1
Q ss_pred ccCeEEEEeeChhhHHHHHhhHH
Q 024663 164 NAQNAVLSGCSAGGLTSILHCDN 186 (264)
Q Consensus 164 ~a~~VllsG~SAGGlga~~~~d~ 186 (264)
..++++|.|.|.||.-++..+..
T Consensus 68 ~~~~~~l~G~S~Gg~ia~~~a~~ 90 (251)
T TIGR03695 68 GIEPFFLVGYSMGGRIALYYALQ 90 (251)
T ss_pred CCCeEEEEEeccHHHHHHHHHHh
Confidence 34679999999999877766554
No 69
>cd07207 Pat_ExoU_VipD_like ExoU and VipD-like proteins; homologus to patatin, cPLA2, and iPLA2. ExoU, a 74-kDa enzyme, is a potent virulence factor of Pseudomonas aeruginosa. One of the pathogenic mechanisms of P. aeruginosa is to induce cytotoxicity by the injection of effector proteins (e.g. ExoU) using the type III secretion (T3S) system. ExoU is homologus to patatin and also has the conserved catalytic residues of mammalian calcium-independent (iPLA2) and cytosolic (cPLA2) PLA2. In vitro, ExoU cytotoxity is blocked by the inhibitor of cytosolic and Ca2-independent phospholipase A2 (cPLA2 and iPLA2) enzymes, suggesting that phospholipase A2 inhibitors may represent a novel mode of treatment for acute P. aeruginosa infections. ExoU requires eukaryotic superoxide dismutase as a cofactor and cleaves phosphatidylcholine and phosphatidylethanolamine in vitro. VipD, a 69-kDa cytosolic protein, belongs to the members of Legionella pneumophila family and is homologus to ExoU from Pseudomona
Probab=54.41 E-value=17 Score=30.79 Aligned_cols=30 Identities=27% Similarity=0.448 Sum_probs=21.5
Q ss_pred HHHHHHHHhCCCccCeEEEEeeChhhHHHHHhh
Q 024663 152 AVMEDLMAKGMKNAQNAVLSGCSAGGLTSILHC 184 (264)
Q Consensus 152 avl~~L~~~gl~~a~~VllsG~SAGGlga~~~~ 184 (264)
-+++.|.++++.- =+++|.|||++=+.+.+
T Consensus 16 Gvl~~L~e~~~~~---d~i~GtSaGai~aa~~a 45 (194)
T cd07207 16 GALKALEEAGILK---KRVAGTSAGAITAALLA 45 (194)
T ss_pred HHHHHHHHcCCCc---ceEEEECHHHHHHHHHH
Confidence 4577777655543 68999999998665544
No 70
>KOG2237 consensus Predicted serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=54.26 E-value=12 Score=39.12 Aligned_cols=34 Identities=32% Similarity=0.452 Sum_probs=30.2
Q ss_pred ehHHHHHHHHHHHHHhCCCccCeEEEEeeChhhH
Q 024663 145 RGARVFQAVMEDLMAKGMKNAQNAVLSGCSAGGL 178 (264)
Q Consensus 145 rG~~n~~avl~~L~~~gl~~a~~VllsG~SAGGl 178 (264)
++..-+++..++|.++|+-.+++.-+.|.||||+
T Consensus 528 N~f~Dfia~AeyLve~gyt~~~kL~i~G~SaGGl 561 (712)
T KOG2237|consen 528 NSFDDFIACAEYLVENGYTQPSKLAIEGGSAGGL 561 (712)
T ss_pred ccHHHHHHHHHHHHHcCCCCccceeEecccCccc
Confidence 3356688899999999999999999999999997
No 71
>PRK10673 acyl-CoA esterase; Provisional
Probab=54.25 E-value=29 Score=29.71 Aligned_cols=36 Identities=19% Similarity=0.152 Sum_probs=23.4
Q ss_pred cCeEEEEeeChhhHHHHHhhHHHHhhCCCCceEEEeeccc
Q 024663 165 AQNAVLSGCSAGGLTSILHCDNFRALFPVGTKVKCFADAG 204 (264)
Q Consensus 165 a~~VllsG~SAGGlga~~~~d~v~~~lp~~a~v~~l~DSG 204 (264)
.+++.|.|+|.||.-+...+.. .|..++-.++.|++
T Consensus 80 ~~~~~lvGhS~Gg~va~~~a~~----~~~~v~~lvli~~~ 115 (255)
T PRK10673 80 IEKATFIGHSMGGKAVMALTAL----APDRIDKLVAIDIA 115 (255)
T ss_pred CCceEEEEECHHHHHHHHHHHh----CHhhcceEEEEecC
Confidence 3569999999999877765533 45444444444544
No 72
>PRK05077 frsA fermentation/respiration switch protein; Reviewed
Probab=54.20 E-value=39 Score=32.88 Aligned_cols=34 Identities=18% Similarity=0.161 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHhCCCccCeEEEEeeChhhHHHHH
Q 024663 149 VFQAVMEDLMAKGMKNAQNAVLSGCSAGGLTSIL 182 (264)
Q Consensus 149 n~~avl~~L~~~gl~~a~~VllsG~SAGGlga~~ 182 (264)
..++++++|.+...-+.++|.+.|.|.||+-++.
T Consensus 248 ~~~avld~l~~~~~vd~~ri~l~G~S~GG~~Al~ 281 (414)
T PRK05077 248 LHQAVLNALPNVPWVDHTRVAAFGFRFGANVAVR 281 (414)
T ss_pred HHHHHHHHHHhCcccCcccEEEEEEChHHHHHHH
Confidence 3478999998643336789999999999987764
No 73
>PF08237 PE-PPE: PE-PPE domain; InterPro: IPR013228 The human pathogen Mycobacterium tuberculosis harbours a large number of genes that encode proteins whose N-termini contain the characteristic motifs Pro-Glu (PE) or Pro-Pro-Glu (PPE). A subgroup of the PE proteins contains polymorphic GC-rich sequences (PGRS), while a subgroup of the PPE proteins contains major polymorphic tandem repeats (MPTR). The function of most of these proteins remains unknown []. However, the PE_PGRS proteins from Mycobacterium marinum are secreted by components of the ESX-5 system that belongs to the recently defined type VII secretion systems []. It has also been reported that the PE_PGRS family of proteins contains multiple calcium-binding and glycine-rich sequence motifs GGXGXD/NXUX. This sequence repeat constitutes a calcium-binding parallel beta-roll or parallel beta-helix structure and is found in RTX toxins secreted by many Gram-negative bacteria []. This domain is found C-terminal to the PE (IPR000084 from INTERPRO) and PPE (IPR000030 from INTERPRO) domains. The secondary structure of this domain is predicted to be a mixture of alpha helices and beta strands [].
Probab=53.89 E-value=42 Score=30.15 Aligned_cols=55 Identities=13% Similarity=0.091 Sum_probs=39.6
Q ss_pred ehHHHHHHHHHHHHHhCCCccCeEEEEeeChhhHHHHHhhHHHHhhCC---CCceEEEeecc
Q 024663 145 RGARVFQAVMEDLMAKGMKNAQNAVLSGCSAGGLTSILHCDNFRALFP---VGTKVKCFADA 203 (264)
Q Consensus 145 rG~~n~~avl~~L~~~gl~~a~~VllsG~SAGGlga~~~~d~v~~~lp---~~a~v~~l~DS 203 (264)
.|..++.+.|+... ...+.|+|.|.|-|+.-+-....++.+.-. ...++.++.|-
T Consensus 31 ~G~~~L~~ai~~~~----~~~~~vvV~GySQGA~Va~~~~~~l~~~~~~~~~~l~fVl~gnP 88 (225)
T PF08237_consen 31 EGVANLDAAIRAAI----AAGGPVVVFGYSQGAVVASNVLRRLAADGDPPPDDLSFVLIGNP 88 (225)
T ss_pred HHHHHHHHHHHhhc----cCCCCEEEEEECHHHHHHHHHHHHHHhcCCCCcCceEEEEecCC
Confidence 46667777766433 367789999999999999998888887432 24566666554
No 74
>TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein. Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity.
Probab=53.74 E-value=38 Score=29.08 Aligned_cols=35 Identities=20% Similarity=0.105 Sum_probs=22.7
Q ss_pred cCeEEEEeeChhhHHHHHhhHHHHhhCCCCceEEEeecc
Q 024663 165 AQNAVLSGCSAGGLTSILHCDNFRALFPVGTKVKCFADA 203 (264)
Q Consensus 165 a~~VllsG~SAGGlga~~~~d~v~~~lp~~a~v~~l~DS 203 (264)
.++++|.|.|.||.-++..+ ...|..++..++.++
T Consensus 94 ~~~~~lvG~S~Gg~~a~~~a----~~~p~~v~~~v~~~~ 128 (278)
T TIGR03056 94 LSPDGVIGHSAGAAIALRLA----LDGPVTPRMVVGINA 128 (278)
T ss_pred CCCceEEEECccHHHHHHHH----HhCCcccceEEEEcC
Confidence 36789999999998777654 345543443444444
No 75
>TIGR01738 bioH putative pimeloyl-BioC--CoA transferase BioH. This CoA-binding enzyme is required for the production of pimeloyl-coenzyme A, the substrate of the BioF protein early in the biosynthesis of biotin. Its exact function is unknown, but is proposed in ref 2. This enzyme belongs to the alpha/beta hydrolase fold family (pfam model pfam00561). Members of this family are restricted to the Proteobacteria.
Probab=53.22 E-value=30 Score=28.47 Aligned_cols=51 Identities=18% Similarity=0.212 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhCCCccCeEEEEeeChhhHHHHHhhHHHHhhCCCCceEEEeecccccc
Q 024663 150 FQAVMEDLMAKGMKNAQNAVLSGCSAGGLTSILHCDNFRALFPVGTKVKCFADAGYFI 207 (264)
Q Consensus 150 ~~avl~~L~~~gl~~a~~VllsG~SAGGlga~~~~d~v~~~lp~~a~v~~l~DSG~fl 207 (264)
++.+.+++.+ -+. +++.|.|+|.||.-++..+. ..|..++-.++.++...+
T Consensus 52 ~~~~~~~~~~-~~~--~~~~lvG~S~Gg~~a~~~a~----~~p~~v~~~il~~~~~~~ 102 (245)
T TIGR01738 52 LADAAEAIAA-QAP--DPAIWLGWSLGGLVALHIAA----THPDRVRALVTVASSPCF 102 (245)
T ss_pred HHHHHHHHHH-hCC--CCeEEEEEcHHHHHHHHHHH----HCHHhhheeeEecCCccc
Confidence 4555666664 222 68999999999987765443 344334444455555433
No 76
>PRK10349 carboxylesterase BioH; Provisional
Probab=52.88 E-value=38 Score=29.37 Aligned_cols=49 Identities=16% Similarity=0.196 Sum_probs=30.2
Q ss_pred HHHHHHHHHhCCCccCeEEEEeeChhhHHHHHhhHHHHhhCCCCceEEEeeccccc
Q 024663 151 QAVMEDLMAKGMKNAQNAVLSGCSAGGLTSILHCDNFRALFPVGTKVKCFADAGYF 206 (264)
Q Consensus 151 ~avl~~L~~~gl~~a~~VllsG~SAGGlga~~~~d~v~~~lp~~a~v~~l~DSG~f 206 (264)
+...+++.+.. .+++.|.|+|.||.-++..+. ..|..++-.++.|+...
T Consensus 62 ~~~~~~l~~~~---~~~~~lvGhS~Gg~ia~~~a~----~~p~~v~~lili~~~~~ 110 (256)
T PRK10349 62 ADMAEAVLQQA---PDKAIWLGWSLGGLVASQIAL----THPERVQALVTVASSPC 110 (256)
T ss_pred HHHHHHHHhcC---CCCeEEEEECHHHHHHHHHHH----hChHhhheEEEecCccc
Confidence 34455555422 378999999999998875543 34544444555566433
No 77
>PLN02894 hydrolase, alpha/beta fold family protein
Probab=52.04 E-value=42 Score=32.34 Aligned_cols=51 Identities=25% Similarity=0.236 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhCCCccCeEEEEeeChhhHHHHHhhHHHHhhCCCCce-EEEeecccccc
Q 024663 150 FQAVMEDLMAKGMKNAQNAVLSGCSAGGLTSILHCDNFRALFPVGTK-VKCFADAGYFI 207 (264)
Q Consensus 150 ~~avl~~L~~~gl~~a~~VllsG~SAGGlga~~~~d~v~~~lp~~a~-v~~l~DSG~fl 207 (264)
++.+.+++... +.++++|.|+|.||+-+...+-. .|..++ +.++.-+|+..
T Consensus 163 ~~~i~~~~~~l---~~~~~~lvGhS~GG~la~~~a~~----~p~~v~~lvl~~p~~~~~ 214 (402)
T PLN02894 163 IDSFEEWRKAK---NLSNFILLGHSFGGYVAAKYALK----HPEHVQHLILVGPAGFSS 214 (402)
T ss_pred HHHHHHHHHHc---CCCCeEEEEECHHHHHHHHHHHh----CchhhcEEEEECCccccC
Confidence 34444554432 33579999999999887765433 343333 34443345443
No 78
>TIGR00976 /NonD putative hydrolase, CocE/NonD family. This model represents a protein subfamily that includes the cocaine esterase CocE, several glutaryl-7-ACA acylases, and the putative diester hydrolase NonD of Streptomyces griseus (all hydrolases). This family shows extensive, low-level similarity to a family of xaa-pro dipeptidyl-peptidases, and local similarity by PSI-BLAST to many other hydrolases.
Probab=51.99 E-value=21 Score=35.83 Aligned_cols=36 Identities=14% Similarity=0.041 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHhCCCccCeEEEEeeChhhHHHHHhh
Q 024663 148 RVFQAVMEDLMAKGMKNAQNAVLSGCSAGGLTSILHC 184 (264)
Q Consensus 148 ~n~~avl~~L~~~gl~~a~~VllsG~SAGGlga~~~~ 184 (264)
.-+.++++||.++...+ .+|.+.|+|.||.-++..+
T Consensus 80 ~D~~~~i~~l~~q~~~~-~~v~~~G~S~GG~~a~~~a 115 (550)
T TIGR00976 80 ADGYDLVDWIAKQPWCD-GNVGMLGVSYLAVTQLLAA 115 (550)
T ss_pred hHHHHHHHHHHhCCCCC-CcEEEEEeChHHHHHHHHh
Confidence 45788999998754444 6899999999997666543
No 79
>COG0412 Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=51.82 E-value=24 Score=31.66 Aligned_cols=41 Identities=15% Similarity=0.178 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHhCCCccCeEEEEeeChhhHHHHHhhHHH
Q 024663 147 ARVFQAVMEDLMAKGMKNAQNAVLSGCSAGGLTSILHCDNF 187 (264)
Q Consensus 147 ~~n~~avl~~L~~~gl~~a~~VllsG~SAGGlga~~~~d~v 187 (264)
...+++++++|.++....+++|.++|.|.||.=|++.+...
T Consensus 93 ~~d~~a~~~~L~~~~~~~~~~ig~~GfC~GG~~a~~~a~~~ 133 (236)
T COG0412 93 LADIDAALDYLARQPQVDPKRIGVVGFCMGGGLALLAATRA 133 (236)
T ss_pred HHHHHHHHHHHHhCCCCCCceEEEEEEcccHHHHHHhhccc
Confidence 45688999999975546889999999999998888877664
No 80
>KOG4569 consensus Predicted lipase [Lipid transport and metabolism]
Probab=51.23 E-value=45 Score=31.69 Aligned_cols=82 Identities=15% Similarity=0.084 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHhCCCccCeEEEEeeChhhHHHHHhhHHHHhhCC-CCceEEEeeccccccccCCCCCchhHHHHHHHHH-
Q 024663 149 VFQAVMEDLMAKGMKNAQNAVLSGCSAGGLTSILHCDNFRALFP-VGTKVKCFADAGYFINAKDVSGASHIEQFYAQVV- 226 (264)
Q Consensus 149 n~~avl~~L~~~gl~~a~~VllsG~SAGGlga~~~~d~v~~~lp-~~a~v~~l~DSG~fld~~~~~g~~~~~~~~~~~~- 226 (264)
-+++.++.|++ ..+ --+|++||+|.||-=|.+-+.++...-. ...+|+++.=++ +..|+..+.+.++..+
T Consensus 156 ~~~~~~~~L~~-~~~-~~~i~vTGHSLGgAlA~laa~~i~~~~~~~~~~v~v~tFG~------PRvGn~~fa~~~d~~~~ 227 (336)
T KOG4569|consen 156 GLDAELRRLIE-LYP-NYSIWVTGHSLGGALASLAALDLVKNGLKTSSPVKVYTFGQ------PRVGNLAFAEWHDELVP 227 (336)
T ss_pred HHHHHHHHHHH-hcC-CcEEEEecCChHHHHHHHHHHHHHHcCCCCCCceEEEEecC------CCcccHHHHHHHHhhCC
Confidence 46667777775 345 5689999999999777777766665543 234566665543 3345555566665443
Q ss_pred ------HhccccCCchhh
Q 024663 227 ------ATHVHTLFLTLC 238 (264)
Q Consensus 227 ------~~~~~~~~lp~C 238 (264)
+.+.+...||.|
T Consensus 228 ~s~Rvv~~~DiVP~lP~~ 245 (336)
T KOG4569|consen 228 YSFRVVHRRDIVPHLPGI 245 (336)
T ss_pred cEEEEEcCCCCCCCCCCc
Confidence 334566677876
No 81
>PLN02824 hydrolase, alpha/beta fold family protein
Probab=51.23 E-value=47 Score=29.54 Aligned_cols=48 Identities=10% Similarity=-0.028 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhCCCccCeEEEEeeChhhHHHHHhhHHHHhhCCCCceEEEeeccc
Q 024663 150 FQAVMEDLMAKGMKNAQNAVLSGCSAGGLTSILHCDNFRALFPVGTKVKCFADAG 204 (264)
Q Consensus 150 ~~avl~~L~~~gl~~a~~VllsG~SAGGlga~~~~d~v~~~lp~~a~v~~l~DSG 204 (264)
.+.+.+.|.+.+ .++++|.|.|.||.=+...+- ..|..++-.++.++.
T Consensus 89 a~~l~~~l~~l~---~~~~~lvGhS~Gg~va~~~a~----~~p~~v~~lili~~~ 136 (294)
T PLN02824 89 GEQLNDFCSDVV---GDPAFVICNSVGGVVGLQAAV----DAPELVRGVMLINIS 136 (294)
T ss_pred HHHHHHHHHHhc---CCCeEEEEeCHHHHHHHHHHH----hChhheeEEEEECCC
Confidence 444444444322 278999999999977765443 345444444455543
No 82
>PRK15231 fimbrial adhesin protein SefD; Provisional
Probab=50.55 E-value=27 Score=29.84 Aligned_cols=62 Identities=15% Similarity=0.164 Sum_probs=40.6
Q ss_pred CCCCeEEEecCCCCCCccEEEEeeccccccCchhhhcccCCCCCCccccccccccccccCCCCCCCCCcc
Q 024663 45 GSPPAYHFDKGFGAGINNWLVHIEGGGWCNNVTTCLERKKTRLGSSKQMVKVVAFSGMLSNKQKFNPDFY 114 (264)
Q Consensus 45 GSp~~y~~~~g~g~~s~k~lI~leGGG~C~d~~tC~~r~~t~lGSs~~~~~~~~~~Gils~~~~~NP~F~ 114 (264)
|-.|+.|+-.|.....+++-|=++|.||--|. ..+ |-.+...+...|.=+.+.++..+||-|
T Consensus 78 gg~P~~YIvqGk~dsqh~LrVRlgGeGWqPd~---~g~-----Giv~~~~eqa~FDVv~DGnQ~V~pD~Y 139 (150)
T PRK15231 78 KNTPGAYIIRGQNNSAHKLRIRIGGEDWQPDN---SGI-----GMVSHSDFTNEFNIYYFGNGDIPVDTY 139 (150)
T ss_pred CCCccEEEEECCCCCcceEEEEecCCCccCCC---CCC-----ceEeecccceeEEEEEeCCeecCCCeE
Confidence 54566666666666688999999999998776 222 211112244456666777788877644
No 83
>cd07220 Pat_PNPLA2 Patatin-like phospholipase domain containing protein 2. PNPLA2 plays a key role in hydrolysis of stored triacylglecerols and is also known as adipose triglyceride lipase (ATGL). Members of this family share a patain domain, initially discovered in potato tubers. ATGL is expressed in white and brown adipose tissue in high mRNA levels. Mutations in PNPLA2 encoding adipose triglyceride lipase (ATGL) leads to neutral lipid storage disease (NLSD) which is characterized by the accumulation of triglycerides in multiple tissues. ATGL mutations are also commonly associated with severe forms of skeletal- and cardio-myopathy. This family includes patatin-like proteins: TTS-2.2 (transport-secretion protein 2.2), PNPLA2 (Patatin-like phospholipase domain-containing protein 2), and iPLA2-zeta (Calcium-independent phospholipase A2) from Homo sapiens.
Probab=50.51 E-value=19 Score=32.90 Aligned_cols=31 Identities=29% Similarity=0.249 Sum_probs=20.3
Q ss_pred HHHHHHHhCCCc-cCeEEEEeeChhhHHHHHh
Q 024663 153 VMEDLMAKGMKN-AQNAVLSGCSAGGLTSILH 183 (264)
Q Consensus 153 vl~~L~~~gl~~-a~~VllsG~SAGGlga~~~ 183 (264)
|++.|.+++..- .+--.++|+|||++.+...
T Consensus 22 Vl~~L~e~g~~l~~~~~~i~G~SAGAl~aa~~ 53 (249)
T cd07220 22 VASCLLEHAPFLVANARKIYGASAGALTATAL 53 (249)
T ss_pred HHHHHHhcCCcccccCCeEEEEcHHHHHHHHH
Confidence 467777655321 1135688999999988853
No 84
>PF00151 Lipase: Lipase; InterPro: IPR013818 Triglyceride lipases (3.1.1.3 from EC) are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. At least three tissue-specific isozymes exist in higher vertebrates, pancreatic, hepatic and gastric/lingual. These lipases are closely related to each other and to lipoprotein lipase (3.1.1.34 from EC), which hydrolyses triglycerides of chylomicrons and very low density lipoproteins (VLDL) []. The most conserved region in all these proteins is centred around a serine residue which has been shown [] to participate, with an histidine and an aspartic acid residue, in a charge relay system. Such a region is also present in lipases of prokaryotic origin and in lecithin-cholesterol acyltransferase (2.3.1.43 from EC) (LCAT) [], which catalyzes fatty acid transfer between phosphatidylcholine and cholesterol.; PDB: 1LPB_B 1LPA_B 1N8S_A 1GPL_A 1W52_X 2PVS_B 2OXE_B 1BU8_A 2PPL_A 1ETH_A ....
Probab=50.42 E-value=41 Score=31.97 Aligned_cols=82 Identities=20% Similarity=0.222 Sum_probs=49.5
Q ss_pred cCceeEEEecCCCCccCCCcccccCCCceeEehHHHHHH-------HHHHHHH-hCCCccCeEEEEeeChhhHHHHHhhH
Q 024663 114 YNWNRIKVRYCDGASFTGDVEAVNPANNLHFRGARVFQA-------VMEDLMA-KGMKNAQNAVLSGCSAGGLTSILHCD 185 (264)
Q Consensus 114 ~nwN~V~vpYCdGd~~~Gd~~~~~~~~~l~frG~~n~~a-------vl~~L~~-~gl~~a~~VllsG~SAGGlga~~~~d 185 (264)
.|.|+|.|-+-.+.. ..|.+...|++. .|+.|.+ .++ ..++|-|.|+|-||--|-+-..
T Consensus 103 ~d~NVI~VDWs~~a~------------~~Y~~a~~n~~~vg~~la~~l~~L~~~~g~-~~~~ihlIGhSLGAHvaG~aG~ 169 (331)
T PF00151_consen 103 GDYNVIVVDWSRGAS------------NNYPQAVANTRLVGRQLAKFLSFLINNFGV-PPENIHLIGHSLGAHVAGFAGK 169 (331)
T ss_dssp S-EEEEEEE-HHHHS------------S-HHHHHHHHHHHHHHHHHHHHHHHHHH----GGGEEEEEETCHHHHHHHHHH
T ss_pred CCceEEEEcchhhcc------------ccccchhhhHHHHHHHHHHHHHHHHhhcCC-ChhHEEEEeeccchhhhhhhhh
Confidence 356777776644432 123333334333 3556663 344 4689999999999999998888
Q ss_pred HHHh--hCCCCceEEEeeccccccccCC
Q 024663 186 NFRA--LFPVGTKVKCFADAGYFINAKD 211 (264)
Q Consensus 186 ~v~~--~lp~~a~v~~l~DSG~fld~~~ 211 (264)
++.. .++ ++..|.=||+.+...+
T Consensus 170 ~~~~~~ki~---rItgLDPAgP~F~~~~ 194 (331)
T PF00151_consen 170 YLKGGGKIG---RITGLDPAGPLFENNP 194 (331)
T ss_dssp HTTT---SS---EEEEES-B-TTTTTS-
T ss_pred hccCcceee---EEEecCcccccccCCC
Confidence 8888 665 7888888888776543
No 85
>cd07230 Pat_TGL4-5_like Triacylglycerol lipase 4 and 5. TGL4 and TGL5 are triacylglycerol lipases that are involved in triacylglycerol mobilization and degradation; they are found in lipid particles. Tgl4 is a functional ortholog of mammalian adipose TG lipase (ATGL) and is phosphorylated and activated by cyclin-dependent kinase 1 (Cdk1/Cdc28). TGL4 is 30% homologus to TGL3, whereas TGL5 is 26% homologus to TGL3. This family includes TGL4 (STC1) and TGL5 (STC2) from Saccharomyces cerevisiae.
Probab=50.27 E-value=20 Score=35.35 Aligned_cols=30 Identities=27% Similarity=0.622 Sum_probs=22.2
Q ss_pred HHHHHHHhCCCccCeEEEEeeChhhHHHHHhhH
Q 024663 153 VMEDLMAKGMKNAQNAVLSGCSAGGLTSILHCD 185 (264)
Q Consensus 153 vl~~L~~~gl~~a~~VllsG~SAGGlga~~~~d 185 (264)
|++.|.++++.. + +++|+|||++-+.+.+-
T Consensus 91 VLkaL~E~gl~p-~--vIsGTSaGAivAal~as 120 (421)
T cd07230 91 VLKALFEANLLP-R--IISGSSAGSIVAAILCT 120 (421)
T ss_pred HHHHHHHcCCCC-C--EEEEECHHHHHHHHHHc
Confidence 477777777753 2 79999999988766553
No 86
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=49.99 E-value=30 Score=32.29 Aligned_cols=34 Identities=26% Similarity=0.398 Sum_probs=24.5
Q ss_pred CccCeEEEEeeChhhHHHHHhhHHHHhhCCCCceEEEeec
Q 024663 163 KNAQNAVLSGCSAGGLTSILHCDNFRALFPVGTKVKCFAD 202 (264)
Q Consensus 163 ~~a~~VllsG~SAGGlga~~~~d~v~~~lp~~a~v~~l~D 202 (264)
.+.++|+|+|. ||.+..+++++.+|+ +++.++.|
T Consensus 272 ~~~~~Iil~GG-----Ga~ll~~~l~~~f~~-~~i~~~~d 305 (320)
T TIGR03739 272 ESIQNIVLVGG-----GAFLFKKAVKAAFPK-HRIVEVDE 305 (320)
T ss_pred CcccEEEEeCC-----cHHHHHHHHHHHCCC-CeeEecCC
Confidence 35788999875 344668999999994 55555555
No 87
>COG4814 Uncharacterized protein with an alpha/beta hydrolase fold [General function prediction only]
Probab=49.53 E-value=23 Score=33.29 Aligned_cols=44 Identities=20% Similarity=0.214 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHhCCCccCeEEEEeeChhhHHHHHhhHHHHh--hCCC
Q 024663 148 RVFQAVMEDLMAKGMKNAQNAVLSGCSAGGLTSILHCDNFRA--LFPV 193 (264)
Q Consensus 148 ~n~~avl~~L~~~gl~~a~~VllsG~SAGGlga~~~~d~v~~--~lp~ 193 (264)
.=++.+|.+|.++ =+-+++=+.|+|+||+|.....-...+ .+|+
T Consensus 120 ~wlk~~msyL~~~--Y~i~k~n~VGhSmGg~~~~~Y~~~yg~dks~P~ 165 (288)
T COG4814 120 KWLKKAMSYLQKH--YNIPKFNAVGHSMGGLGLTYYMIDYGDDKSLPP 165 (288)
T ss_pred HHHHHHHHHHHHh--cCCceeeeeeeccccHHHHHHHHHhcCCCCCcc
Confidence 3488999999973 233456688999999999887766653 5773
No 88
>KOG3724 consensus Negative regulator of COPII vesicle formation [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.88 E-value=51 Score=35.55 Aligned_cols=64 Identities=14% Similarity=0.115 Sum_probs=38.1
Q ss_pred CCccCeEEEEeeChhhHHHHH---hhHHHHhhCCCCceEEEeeccccccccCCCCCchhHHHHHHHHHHhccc
Q 024663 162 MKNAQNAVLSGCSAGGLTSIL---HCDNFRALFPVGTKVKCFADAGYFINAKDVSGASHIEQFYAQVVATHVH 231 (264)
Q Consensus 162 l~~a~~VllsG~SAGGlga~~---~~d~v~~~lp~~a~v~~l~DSG~fld~~~~~g~~~~~~~~~~~~~~~~~ 231 (264)
.+.|+.|+|.|+|.||+=|.. +-+++..... .++.=|. -...+...-++.+-+||..+.|.|+-
T Consensus 178 ~p~P~sVILVGHSMGGiVAra~~tlkn~~~~sVn-----tIITlss-PH~a~Pl~~D~~l~~fy~~vnn~W~k 244 (973)
T KOG3724|consen 178 SPLPHSVILVGHSMGGIVARATLTLKNEVQGSVN-----TIITLSS-PHAAPPLPLDRFLLRFYLLVNNYWNK 244 (973)
T ss_pred CCCCceEEEEeccchhHHHHHHHhhhhhccchhh-----hhhhhcC-cccCCCCCCcHHHHHHHHHHHHHHHH
Confidence 456899999999999975543 2222222221 1111122 22334455566778999999998743
No 89
>PRK00870 haloalkane dehalogenase; Provisional
Probab=48.21 E-value=56 Score=29.33 Aligned_cols=37 Identities=22% Similarity=0.193 Sum_probs=24.2
Q ss_pred cCeEEEEeeChhhHHHHHhhHHHHhhCCCCceEEEeecccc
Q 024663 165 AQNAVLSGCSAGGLTSILHCDNFRALFPVGTKVKCFADAGY 205 (264)
Q Consensus 165 a~~VllsG~SAGGlga~~~~d~v~~~lp~~a~v~~l~DSG~ 205 (264)
.++|+|.|+|.||.=+..-+ ...|..++-.++.+++.
T Consensus 114 ~~~v~lvGhS~Gg~ia~~~a----~~~p~~v~~lvl~~~~~ 150 (302)
T PRK00870 114 LTDVTLVCQDWGGLIGLRLA----AEHPDRFARLVVANTGL 150 (302)
T ss_pred CCCEEEEEEChHHHHHHHHH----HhChhheeEEEEeCCCC
Confidence 35799999999997665443 33454454455566653
No 90
>PLN00413 triacylglycerol lipase
Probab=47.08 E-value=78 Score=32.01 Aligned_cols=36 Identities=22% Similarity=0.312 Sum_probs=25.1
Q ss_pred HHHHHHHhCCCccCeEEEEeeChhhHHHHHhhHHHHhh
Q 024663 153 VMEDLMAKGMKNAQNAVLSGCSAGGLTSILHCDNFRAL 190 (264)
Q Consensus 153 vl~~L~~~gl~~a~~VllsG~SAGGlga~~~~d~v~~~ 190 (264)
.++.+++ ..++ .+|+++|+|.||-=|.+.+.+++..
T Consensus 273 ~Lk~ll~-~~p~-~kliVTGHSLGGALAtLaA~~L~~~ 308 (479)
T PLN00413 273 HLKEIFD-QNPT-SKFILSGHSLGGALAILFTAVLIMH 308 (479)
T ss_pred HHHHHHH-HCCC-CeEEEEecCHHHHHHHHHHHHHHhc
Confidence 3444443 2343 4699999999998888888777643
No 91
>TIGR03712 acc_sec_asp2 accessory Sec system protein Asp2. This protein is designated Asp2 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=46.89 E-value=14 Score=37.45 Aligned_cols=46 Identities=17% Similarity=0.291 Sum_probs=29.8
Q ss_pred eeEehHHHHHHHHH-----HHHHhCCCccCeEEEEeeChhhHHHHHhhHHHH
Q 024663 142 LHFRGARVFQAVME-----DLMAKGMKNAQNAVLSGCSAGGLTSILHCDNFR 188 (264)
Q Consensus 142 l~frG~~n~~avl~-----~L~~~gl~~a~~VllsG~SAGGlga~~~~d~v~ 188 (264)
-.+-|...+++-+. .|..-||+ ++++||+|-|+|.+||+++...+.
T Consensus 329 aFYlGs~eyE~~I~~~I~~~L~~LgF~-~~qLILSGlSMGTfgAlYYga~l~ 379 (511)
T TIGR03712 329 AFYLGSDEYEQGIINVIQEKLDYLGFD-HDQLILSGLSMGTFGALYYGAKLS 379 (511)
T ss_pred eeeeCcHHHHHHHHHHHHHHHHHhCCC-HHHeeeccccccchhhhhhcccCC
Confidence 34455444443333 33323554 568999999999999999876654
No 92
>PF01734 Patatin: Patatin-like phospholipase This Prosite family is a subset of the Pfam family; InterPro: IPR002641 This domain is structurally and functionally related to the animal cytosolic phospholipase A2. This domain is found in the patatin glycoproteins from the total soluble protein in potato tubers []. Patatin is a storage protein but it also has the enzymatic activity of lipid acyl hydrolase, catalysing the cleavage of fatty acids from membrane lipids [].; GO: 0006629 lipid metabolic process; PDB: 3TU3_B 4AKX_B 1OXW_A.
Probab=46.44 E-value=16 Score=29.33 Aligned_cols=18 Identities=44% Similarity=0.543 Sum_probs=14.1
Q ss_pred EEEEeeChhhHHHHHhhH
Q 024663 168 AVLSGCSAGGLTSILHCD 185 (264)
Q Consensus 168 VllsG~SAGGlga~~~~d 185 (264)
-+++|+||||+-+.+.+-
T Consensus 29 d~i~GtS~Gal~a~~~~~ 46 (204)
T PF01734_consen 29 DVISGTSAGALNAALLAL 46 (204)
T ss_dssp SEEEEECCHHHHHHHHHT
T ss_pred cEEEEcChhhhhHHHHHh
Confidence 479999999998855443
No 93
>PLN02571 triacylglycerol lipase
Probab=46.21 E-value=43 Score=33.17 Aligned_cols=29 Identities=21% Similarity=0.244 Sum_probs=22.4
Q ss_pred CCcc-CeEEEEeeChhhHHHHHhhHHHHhh
Q 024663 162 MKNA-QNAVLSGCSAGGLTSILHCDNFRAL 190 (264)
Q Consensus 162 l~~a-~~VllsG~SAGGlga~~~~d~v~~~ 190 (264)
.++. .+|+++|+|-||.=|.+.+.+++..
T Consensus 221 y~~e~~sI~VTGHSLGGALAtLaA~dl~~~ 250 (413)
T PLN02571 221 YKDEEISITICGHSLGAALATLNAVDIVAN 250 (413)
T ss_pred cCcccccEEEeccchHHHHHHHHHHHHHHh
Confidence 4443 3699999999998888888887653
No 94
>PF06500 DUF1100: Alpha/beta hydrolase of unknown function (DUF1100); InterPro: IPR010520 Proteins in this entry display esterase activity toward pNP-butyrate []. This entry also includes 2,6-dihydropseudooxynicotine hydrolase which has a role in nicotine catabolism by cleaving a C-C bond in 2,6-dihydroxypseudooxyicotine [, ].; PDB: 3OUR_A 3MVE_B 2JBW_C.
Probab=46.16 E-value=26 Score=34.63 Aligned_cols=35 Identities=26% Similarity=0.320 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHhCCCccCeEEEEeeChhhHHHHH
Q 024663 148 RVFQAVMEDLMAKGMKNAQNAVLSGCSAGGLTSIL 182 (264)
Q Consensus 148 ~n~~avl~~L~~~gl~~a~~VllsG~SAGGlga~~ 182 (264)
+-+++|||||.+...-+.++|.+.|-|.||+-|+-
T Consensus 243 ~l~~aVLd~L~~~p~VD~~RV~~~G~SfGGy~AvR 277 (411)
T PF06500_consen 243 RLHQAVLDYLASRPWVDHTRVGAWGFSFGGYYAVR 277 (411)
T ss_dssp HHHHHHHHHHHHSTTEEEEEEEEEEETHHHHHHHH
T ss_pred HHHHHHHHHHhcCCccChhheEEEEeccchHHHHH
Confidence 45789999998643347789999999999976653
No 95
>PRK04940 hypothetical protein; Provisional
Probab=45.57 E-value=40 Score=29.57 Aligned_cols=23 Identities=17% Similarity=0.407 Sum_probs=18.7
Q ss_pred CeEEEEeeChhhHHHHHhhHHHHhhCC
Q 024663 166 QNAVLSGCSAGGLTSILHCDNFRALFP 192 (264)
Q Consensus 166 ~~VllsG~SAGGlga~~~~d~v~~~lp 192 (264)
+.++|.|+|-|| +++.++.+++.
T Consensus 60 ~~~~liGSSLGG----yyA~~La~~~g 82 (180)
T PRK04940 60 ERPLICGVGLGG----YWAERIGFLCG 82 (180)
T ss_pred CCcEEEEeChHH----HHHHHHHHHHC
Confidence 569999999999 67777777764
No 96
>cd07210 Pat_hypo_W_succinogenes_WS1459_like Hypothetical patatin similar to WS1459 of Wolinella succinogenes. Patatin-like phospholipase. This family predominantly consists of bacterial patatin glycoproteins. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates.
Probab=45.50 E-value=27 Score=30.99 Aligned_cols=29 Identities=31% Similarity=0.543 Sum_probs=21.2
Q ss_pred HHHHHHHhCCCccCeEEEEeeChhhHHHHHhh
Q 024663 153 VMEDLMAKGMKNAQNAVLSGCSAGGLTSILHC 184 (264)
Q Consensus 153 vl~~L~~~gl~~a~~VllsG~SAGGlga~~~~ 184 (264)
+++.|.+++++ . -.++|.|||++-+.+.+
T Consensus 18 vL~aL~e~gi~-~--~~i~GtSaGAi~aa~~a 46 (221)
T cd07210 18 FLAALLEMGLE-P--SAISGTSAGALVGGLFA 46 (221)
T ss_pred HHHHHHHcCCC-c--eEEEEeCHHHHHHHHHH
Confidence 46677766653 2 36999999999877665
No 97
>TIGR03611 RutD pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.
Probab=45.36 E-value=42 Score=28.06 Aligned_cols=21 Identities=19% Similarity=0.254 Sum_probs=16.7
Q ss_pred cCeEEEEeeChhhHHHHHhhH
Q 024663 165 AQNAVLSGCSAGGLTSILHCD 185 (264)
Q Consensus 165 a~~VllsG~SAGGlga~~~~d 185 (264)
.++++|.|+|.||.-++..+.
T Consensus 79 ~~~~~l~G~S~Gg~~a~~~a~ 99 (257)
T TIGR03611 79 IERFHFVGHALGGLIGLQLAL 99 (257)
T ss_pred CCcEEEEEechhHHHHHHHHH
Confidence 467999999999987776543
No 98
>PLN03016 sinapoylglucose-malate O-sinapoyltransferase
Probab=45.11 E-value=1.1e+02 Score=30.23 Aligned_cols=132 Identities=14% Similarity=0.071 Sum_probs=64.8
Q ss_pred CCCeEEEecC-CCCCCccEEEEeeccccccCchhhhcccCCCCCCccccccccccccccCCCCCCCCC--ccCceeEEE-
Q 024663 46 SPPAYHFDKG-FGAGINNWLVHIEGGGWCNNVTTCLERKKTRLGSSKQMVKVVAFSGMLSNKQKFNPD--FYNWNRIKV- 121 (264)
Q Consensus 46 Sp~~y~~~~g-~g~~s~k~lI~leGGG~C~d~~tC~~r~~t~lGSs~~~~~~~~~~Gils~~~~~NP~--F~nwN~V~v- 121 (264)
+...|++-+. .....+-++|.|+||--|-+..-... .+|--....+... + -...-..||. -...|++||
T Consensus 50 ~~lfy~f~es~~~~~~~P~~lWlnGGPG~SS~~g~~~----e~GP~~~~~~~~~--~-~~~~l~~n~~sW~~~anllfiD 122 (433)
T PLN03016 50 VQFFYYFIKSENNPKEDPLLIWLNGGPGCSCLGGIIF----ENGPVGLKFEVFN--G-SAPSLFSTTYSWTKMANIIFLD 122 (433)
T ss_pred eEEEEEEEecCCCcccCCEEEEEcCCCcHHHHHHHHH----hcCCceeeccccC--C-CCCceeeCCCchhhcCcEEEec
Confidence 3344555332 22346789999999988877543432 2221111000000 1 0012234551 013466777
Q ss_pred -ecCCCCccCCCcccccCCCceeEehHHHHHHHHHHHHHhCCC--ccCeEEEEeeChhhHHHHHhhHHHHh
Q 024663 122 -RYCDGASFTGDVEAVNPANNLHFRGARVFQAVMEDLMAKGMK--NAQNAVLSGCSAGGLTSILHCDNFRA 189 (264)
Q Consensus 122 -pYCdGd~~~Gd~~~~~~~~~l~frG~~n~~avl~~L~~~gl~--~a~~VllsG~SAGGlga~~~~d~v~~ 189 (264)
|-=+|-|+.-+... +.+ .. .....+.+++..++.. ++ ....+.|+|.|-||.=+..-+.+|.+
T Consensus 123 qPvGtGfSy~~~~~~-~~~-d~-~~a~~~~~fl~~f~~~--~p~~~~~~~yi~GESYaG~yvP~la~~i~~ 188 (433)
T PLN03016 123 QPVGSGFSYSKTPID-KTG-DI-SEVKRTHEFLQKWLSR--HPQYFSNPLYVVGDSYSGMIVPALVQEISQ 188 (433)
T ss_pred CCCCCCccCCCCCCC-ccC-CH-HHHHHHHHHHHHHHHh--ChhhcCCCEEEEccCccceehHHHHHHHHh
Confidence 33344444322111 110 00 1123455666666653 33 24569999999999777666666654
No 99
>TIGR02240 PHA_depoly_arom poly(3-hydroxyalkanoate) depolymerase. This family consists of the polyhydroxyalkanoic acid (PHA) depolymerase of Pseudomonas oleovorans, Pseudomonas putida BM01, and related species. This enzyme is part of polyester storage and mobilization system as in many bacteria. However, species containing this enzyme are unusual in their capacity to produce aromatic polyesters when grown on carbon sources such as benzoic acid or phenylacetic acid.
Probab=45.05 E-value=37 Score=30.01 Aligned_cols=36 Identities=19% Similarity=0.146 Sum_probs=22.7
Q ss_pred cCeEEEEeeChhhHHHHHhhHHHHhhCCCCceEEEeeccc
Q 024663 165 AQNAVLSGCSAGGLTSILHCDNFRALFPVGTKVKCFADAG 204 (264)
Q Consensus 165 a~~VllsG~SAGGlga~~~~d~v~~~lp~~a~v~~l~DSG 204 (264)
.++++|.|.|.||.=++.-+. ..|..++-.++.++.
T Consensus 90 ~~~~~LvG~S~GG~va~~~a~----~~p~~v~~lvl~~~~ 125 (276)
T TIGR02240 90 YGQVNAIGVSWGGALAQQFAH----DYPERCKKLILAATA 125 (276)
T ss_pred cCceEEEEECHHHHHHHHHHH----HCHHHhhheEEeccC
Confidence 357999999999987665443 344334444445544
No 100
>cd07228 Pat_NTE_like_bacteria Bacterial patatin-like phospholipase domain containing protein 6. Bacterial patatin-like phospholipase domain containing protein 6. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. This group includes YCHK and rssA from Escherichia coli as well as Ylbk from Bacillus amyloliquefaciens.
Probab=43.21 E-value=36 Score=28.65 Aligned_cols=28 Identities=29% Similarity=0.528 Sum_probs=19.6
Q ss_pred HHHHHHHhCCCccCeEEEEeeChhhHHHHHh
Q 024663 153 VMEDLMAKGMKNAQNAVLSGCSAGGLTSILH 183 (264)
Q Consensus 153 vl~~L~~~gl~~a~~VllsG~SAGGlga~~~ 183 (264)
+++.|.+++++ ==+++|.|||++-+.+.
T Consensus 18 vl~~L~e~g~~---~d~i~GtSaGAi~aa~~ 45 (175)
T cd07228 18 VLRALEEEGIE---IDIIAGSSIGALVGALY 45 (175)
T ss_pred HHHHHHHCCCC---eeEEEEeCHHHHHHHHH
Confidence 46677766653 34899999999955444
No 101
>PLN02733 phosphatidylcholine-sterol O-acyltransferase
Probab=42.85 E-value=46 Score=33.06 Aligned_cols=33 Identities=15% Similarity=0.221 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhCCCccCeEEEEeeChhhHHHHHhh
Q 024663 150 FQAVMEDLMAKGMKNAQNAVLSGCSAGGLTSILHC 184 (264)
Q Consensus 150 ~~avl~~L~~~gl~~a~~VllsG~SAGGlga~~~~ 184 (264)
+++.++.+.++ ...++|+|.|+|.||+=+....
T Consensus 148 Lk~lIe~~~~~--~g~~kV~LVGHSMGGlva~~fl 180 (440)
T PLN02733 148 LKKKLETVYKA--SGGKKVNIISHSMGGLLVKCFM 180 (440)
T ss_pred HHHHHHHHHHH--cCCCCEEEEEECHhHHHHHHHH
Confidence 44444444431 3357899999999998877544
No 102
>PF09752 DUF2048: Uncharacterized conserved protein (DUF2048); InterPro: IPR019149 This family of proteins has no known function.
Probab=42.20 E-value=54 Score=31.79 Aligned_cols=37 Identities=24% Similarity=0.260 Sum_probs=27.9
Q ss_pred HHHHHHHHHhCCCccCeEEEEeeChhhHHHHHhhHHHHhhCCCC
Q 024663 151 QAVMEDLMAKGMKNAQNAVLSGCSAGGLTSILHCDNFRALFPVG 194 (264)
Q Consensus 151 ~avl~~L~~~gl~~a~~VllsG~SAGGlga~~~~d~v~~~lp~~ 194 (264)
+++++|+.++|+. ++-|+|-|.||. ++.-.....|+.
T Consensus 163 ~~Ll~Wl~~~G~~---~~g~~G~SmGG~----~A~laa~~~p~p 199 (348)
T PF09752_consen 163 RALLHWLEREGYG---PLGLTGISMGGH----MAALAASNWPRP 199 (348)
T ss_pred HHHHHHHHhcCCC---ceEEEEechhHh----hHHhhhhcCCCc
Confidence 4568899986554 899999999994 555666677754
No 103
>PLN02719 triacylglycerol lipase
Probab=41.76 E-value=51 Score=33.61 Aligned_cols=26 Identities=19% Similarity=0.373 Sum_probs=22.9
Q ss_pred cCeEEEEeeChhhHHHHHhhHHHHhh
Q 024663 165 AQNAVLSGCSAGGLTSILHCDNFRAL 190 (264)
Q Consensus 165 a~~VllsG~SAGGlga~~~~d~v~~~ 190 (264)
..+|+++|+|-||-=|.+.+.++++.
T Consensus 297 ~~sItVTGHSLGGALAtLaA~Dl~~~ 322 (518)
T PLN02719 297 ELSITVTGHSLGGALAVLSAYDVAEM 322 (518)
T ss_pred cceEEEecCcHHHHHHHHHHHHHHHh
Confidence 45899999999999999999888875
No 104
>KOG2183 consensus Prolylcarboxypeptidase (angiotensinase C) [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=41.31 E-value=46 Score=33.39 Aligned_cols=59 Identities=22% Similarity=0.306 Sum_probs=40.0
Q ss_pred ceeEehHHHHHHHHHHH-------HHhCCCccCeEEEEeeChhhHHHHHhhHHHHhhCC--------CCceEEEeecc
Q 024663 141 NLHFRGARVFQAVMEDL-------MAKGMKNAQNAVLSGCSAGGLTSILHCDNFRALFP--------VGTKVKCFADA 203 (264)
Q Consensus 141 ~l~frG~~n~~avl~~L-------~~~gl~~a~~VllsG~SAGGlga~~~~d~v~~~lp--------~~a~v~~l~DS 203 (264)
...|-|+.+.+..|++. ++.--.++..||..|.|-|| +-+.++|-.+| .+|.|.-+.|.
T Consensus 135 ~~~hlgyLtseQALADfA~ll~~lK~~~~a~~~pvIafGGSYGG----MLaAWfRlKYPHiv~GAlAaSAPvl~f~d~ 208 (492)
T KOG2183|consen 135 DARHLGYLTSEQALADFAELLTFLKRDLSAEASPVIAFGGSYGG----MLAAWFRLKYPHIVLGALAASAPVLYFEDT 208 (492)
T ss_pred ChhhhccccHHHHHHHHHHHHHHHhhccccccCcEEEecCchhh----HHHHHHHhcChhhhhhhhhccCceEeecCC
Confidence 45677888887776643 33223467889999999999 66677887777 35555555443
No 105
>PLN02753 triacylglycerol lipase
Probab=40.79 E-value=54 Score=33.56 Aligned_cols=53 Identities=17% Similarity=0.237 Sum_probs=35.1
Q ss_pred cCeEEEEeeChhhHHHHHhhHHHHhh-CCC-----CceEEEeeccccccccCCCCCchhHHHHHH
Q 024663 165 AQNAVLSGCSAGGLTSILHCDNFRAL-FPV-----GTKVKCFADAGYFINAKDVSGASHIEQFYA 223 (264)
Q Consensus 165 a~~VllsG~SAGGlga~~~~d~v~~~-lp~-----~a~v~~l~DSG~fld~~~~~g~~~~~~~~~ 223 (264)
..+|++||+|-||-=|.+.+.+++.. +++ ...|.++.=++ .--|+..+.++++
T Consensus 311 ~~sItVTGHSLGGALAtLaA~Dla~~g~n~~~~~~~~pV~vyTFGs------PRVGN~aFA~~~~ 369 (531)
T PLN02753 311 DLSITVTGHSLGGALAILSAYDIAEMGLNRSKKGKVIPVTVLTYGG------PRVGNVRFKDRME 369 (531)
T ss_pred CceEEEEccCHHHHHHHHHHHHHHHhcccccccCccCceEEEEeCC------CCccCHHHHHHHH
Confidence 46899999999999999999888764 321 23355555443 2335555555554
No 106
>COG1752 RssA Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]
Probab=40.63 E-value=31 Score=31.90 Aligned_cols=30 Identities=30% Similarity=0.461 Sum_probs=21.8
Q ss_pred HHHHHHHhCCCccCeEEEEeeChhhHHHHHhhH
Q 024663 153 VMEDLMAKGMKNAQNAVLSGCSAGGLTSILHCD 185 (264)
Q Consensus 153 vl~~L~~~gl~~a~~VllsG~SAGGlga~~~~d 185 (264)
|++-|.+.| -+--+|+|+|||++-+.+.+.
T Consensus 29 Vl~aL~e~g---i~~~~iaGtS~GAiva~l~A~ 58 (306)
T COG1752 29 VLKALEEAG---IPIDVIAGTSAGAIVAALYAA 58 (306)
T ss_pred HHHHHHHcC---CCccEEEecCHHHHHHHHHHc
Confidence 467777655 345689999999987776654
No 107
>PLN02162 triacylglycerol lipase
Probab=40.36 E-value=59 Score=32.80 Aligned_cols=126 Identities=17% Similarity=0.155 Sum_probs=59.5
Q ss_pred ccEEEEeeccccccCchhhhcccCCCCCCcc-cccc--ccccccccCCCCCCCCCccCceeEEEecCC-CCccCCCccc-
Q 024663 61 NNWLVHIEGGGWCNNVTTCLERKKTRLGSSK-QMVK--VVAFSGMLSNKQKFNPDFYNWNRIKVRYCD-GASFTGDVEA- 135 (264)
Q Consensus 61 ~k~lI~leGGG~C~d~~tC~~r~~t~lGSs~-~~~~--~~~~~Gils~~~~~NP~F~nwN~V~vpYCd-Gd~~~Gd~~~- 135 (264)
+.|=.+|-|+=-||+.-.=....+......+ .-++ ...|.|--+.+. .| -..|.+...+++|+ |-+|.|-...
T Consensus 163 ~~w~m~~v~~y~~wn~~~~~~~TQafv~~d~~~d~~~IVVAFRGT~~~~~-~D-WiTDld~s~~~~~~~GkVH~GF~~A~ 240 (475)
T PLN02162 163 NTWKMDLVGNYDFYNAFQESKLTQAFVFKTSSTNPDLIVVSFRGTEPFEA-AD-WCTDLDLSWYELKNVGKVHAGFSRAL 240 (475)
T ss_pred HhcCccccchhhhhhhhhhhcccceEEEEeccCCCceEEEEEccCCCCcH-HH-HHhhcCcceecCCCCeeeeHHHHHHH
Confidence 5677888888888885432211111111000 0001 122344321111 11 13344555667764 6677774321
Q ss_pred ---ccCC---CceeEehHHH---HHHHHHHHHHhCCCccCeEEEEeeChhhHHHHHhhHHHHhh
Q 024663 136 ---VNPA---NNLHFRGARV---FQAVMEDLMAKGMKNAQNAVLSGCSAGGLTSILHCDNFRAL 190 (264)
Q Consensus 136 ---~~~~---~~l~frG~~n---~~avl~~L~~~gl~~a~~VllsG~SAGGlga~~~~d~v~~~ 190 (264)
.+.+ ...-.+.+.. ++..++.++++ .+ ..++++||+|-||-=|.+.+..++..
T Consensus 241 ~~~~~~~~p~~~~~~~~~~ay~~I~~~L~~lL~k-~p-~~kliVTGHSLGGALAtLaAa~L~~~ 302 (475)
T PLN02162 241 GLQKDGGWPKENISLLHQYAYYTIRQMLRDKLAR-NK-NLKYILTGHSLGGALAALFPAILAIH 302 (475)
T ss_pred HhhhcccccccccchhhhhhHHHHHHHHHHHHHh-CC-CceEEEEecChHHHHHHHHHHHHHHc
Confidence 0100 0111111122 23333444432 23 35799999999998888887777643
No 108
>PF06821 Ser_hydrolase: Serine hydrolase; InterPro: IPR010662 This family contains a number of hypothetical bacterial proteins of unknown function, which may be cytosolic. The Crystal Structure Of The Yden Gene Product Swiss:P96671 from B. Subtilis has been solved. The structure shows an alpha-beta hydrolase fold suggesting an enzymatic function for these proteins [].; GO: 0016787 hydrolase activity; PDB: 3BDV_B 2QS9_A 1UXO_A.
Probab=39.97 E-value=72 Score=27.20 Aligned_cols=35 Identities=14% Similarity=0.216 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHhCCCccCeEEEEeeChhhHHHHHhhH
Q 024663 148 RVFQAVMEDLMAKGMKNAQNAVLSGCSAGGLTSILHCD 185 (264)
Q Consensus 148 ~n~~avl~~L~~~gl~~a~~VllsG~SAGGlga~~~~d 185 (264)
..|.+.|+.-+. . ..+.++|.|+|.|++.++.+..
T Consensus 40 ~~W~~~l~~~i~-~--~~~~~ilVaHSLGc~~~l~~l~ 74 (171)
T PF06821_consen 40 DEWVQALDQAID-A--IDEPTILVAHSLGCLTALRWLA 74 (171)
T ss_dssp HHHHHHHHHCCH-C---TTTEEEEEETHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-h--cCCCeEEEEeCHHHHHHHHHHh
Confidence 345555554333 2 2345999999999999998876
No 109
>PF00091 Tubulin: Tubulin/FtsZ family, GTPase domain; InterPro: IPR003008 This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.; GO: 0051258 protein polymerization, 0043234 protein complex; PDB: 3E22_B 1SA1_D 3DU7_B 2P4N_B 3DCO_B 1Z2B_D 1SA0_B 2XRP_C 1TVK_B 2BTQ_B ....
Probab=39.33 E-value=91 Score=27.32 Aligned_cols=49 Identities=14% Similarity=0.304 Sum_probs=36.0
Q ss_pred hHHHHHHHHHHHHHh--CCCccCeEEEEeeChhhHHH---HHhhHHHHhhCCCC
Q 024663 146 GARVFQAVMEDLMAK--GMKNAQNAVLSGCSAGGLTS---ILHCDNFRALFPVG 194 (264)
Q Consensus 146 G~~n~~avl~~L~~~--gl~~a~~VllsG~SAGGlga---~~~~d~v~~~lp~~ 194 (264)
|...++.+++.+.+. ..+..+-++|.-+-+||.|+ ..-++.+++.+|..
T Consensus 103 ~~~~~~~~~~~ir~~~e~~d~~~~~~i~~slgGGTGSG~~~~l~~~l~~~y~~~ 156 (216)
T PF00091_consen 103 GEEALEEILEQIRKEIEKCDSLDGFFIVHSLGGGTGSGLGPVLAEMLREEYPKK 156 (216)
T ss_dssp HHHHHHHHHHHHHHHHHTSTTESEEEEEEESSSSHHHHHHHHHHHHHHHTSTTS
T ss_pred ccccccccccccchhhccccccccceecccccceeccccccccchhhhcccccc
Confidence 344778888877752 34888889998888887665 56678899999843
No 110
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=38.99 E-value=71 Score=30.29 Aligned_cols=26 Identities=12% Similarity=0.395 Sum_probs=20.7
Q ss_pred CCccCeEEEEeeChhhHHHHHhhHHHHhhCC
Q 024663 162 MKNAQNAVLSGCSAGGLTSILHCDNFRALFP 192 (264)
Q Consensus 162 l~~a~~VllsG~SAGGlga~~~~d~v~~~lp 192 (264)
..+.++|+|+|.+|- +..++|++.+|
T Consensus 289 ~~~~d~IiL~GGGA~-----ll~~~lk~~f~ 314 (344)
T PRK13917 289 INSFDRVIVTGGGAN-----IFFDSLSHWYS 314 (344)
T ss_pred cCCCCEEEEECCcHH-----HHHHHHHHHcC
Confidence 456788999998773 35699999999
No 111
>cd07390 MPP_AQ1575 Aquifex aeolicus AQ1575 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to AQ1575, an uncharacterized Aquifex aeolicus protein. AQ1575 may play an accessory role in DNA repair, based on the close proximity of its gene to Holliday junction resolvasome genes. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a d
Probab=38.40 E-value=37 Score=28.41 Aligned_cols=53 Identities=9% Similarity=0.019 Sum_probs=32.2
Q ss_pred cCCCCccCCCcccccCCCceeEehHHHHHHHHHHHHHhCCCccCeEEEEeeChh
Q 024663 123 YCDGASFTGDVEAVNPANNLHFRGARVFQAVMEDLMAKGMKNAQNAVLSGCSAG 176 (264)
Q Consensus 123 YCdGd~~~Gd~~~~~~~~~l~frG~~n~~avl~~L~~~gl~~a~~VllsG~SAG 176 (264)
|+-+|.|.|..........-+-+-....+++++.+.+ .+++++.|+++|--..
T Consensus 2 ~~isD~Hlg~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~d~vi~~GDl~~ 54 (168)
T cd07390 2 YFTSDTHFGHANILRFCNRPFDDVEEMDEALIRNWNE-TVGPDDTVYHLGDFSF 54 (168)
T ss_pred eEecccccCCHHHHccCCCCCCCHHHHHHHHHHHHhh-hcCCCCEEEEeCCCCC
Confidence 7788999997543211000000112245677777775 5788999999997443
No 112
>cd07209 Pat_hypo_Ecoli_Z1214_like Hypothetical patatin similar to Z1214 protein of Escherichia coli. Patatin-like phospholipase similar to Z1214 protein of Escherichia coli. This family predominantly consists of bacterial patatin glycoproteins and some representatives from eukaryotes and archaea. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates.
Probab=38.09 E-value=39 Score=29.61 Aligned_cols=29 Identities=28% Similarity=0.547 Sum_probs=20.6
Q ss_pred HHHHHHHhCCCccCeEEEEeeChhhHHHHHhh
Q 024663 153 VMEDLMAKGMKNAQNAVLSGCSAGGLTSILHC 184 (264)
Q Consensus 153 vl~~L~~~gl~~a~~VllsG~SAGGlga~~~~ 184 (264)
+++.|.+++. .--+++|.|||++=+.+.+
T Consensus 16 vl~aL~e~g~---~~d~i~GtS~GAl~aa~~a 44 (215)
T cd07209 16 VLKALAEAGI---EPDIISGTSIGAINGALIA 44 (215)
T ss_pred HHHHHHHcCC---CCCEEEEECHHHHHHHHHH
Confidence 5777777665 2348999999998665543
No 113
>PF05577 Peptidase_S28: Serine carboxypeptidase S28; InterPro: IPR008758 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S28 (clan SC). The predicted active site residues for members of this family and family S10 occur in the same order in the sequence: S, D, H. These serine proteases include several eukaryotic enzymes such as lysosomal Pro-X carboxypeptidase, dipeptidyl-peptidase II, and thymus-specific serine peptidase [, , , ].; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3N2Z_B 3JYH_A 3N0T_C.
Probab=37.94 E-value=1e+02 Score=29.75 Aligned_cols=40 Identities=20% Similarity=0.184 Sum_probs=21.4
Q ss_pred ccCeEEEEeeChhhHHHHHhhHHHHhhCCCCceEEEeeccccccc
Q 024663 164 NAQNAVLSGCSAGGLTSILHCDNFRALFPVGTKVKCFADAGYFIN 208 (264)
Q Consensus 164 ~a~~VllsG~SAGGlga~~~~d~v~~~lp~~a~v~~l~DSG~fld 208 (264)
....+|+.|+|-|| .-+.++|..+|. .-.-.++-|++..-
T Consensus 111 ~~~pwI~~GgSY~G----~Laaw~r~kyP~-~~~ga~ASSapv~a 150 (434)
T PF05577_consen 111 PNSPWIVFGGSYGG----ALAAWFRLKYPH-LFDGAWASSAPVQA 150 (434)
T ss_dssp CC--EEEEEETHHH----HHHHHHHHH-TT-T-SEEEEET--CCH
T ss_pred CCCCEEEECCcchh----HHHHHHHhhCCC-eeEEEEeccceeee
Confidence 33478888888777 556678888884 22334444544433
No 114
>PRK10749 lysophospholipase L2; Provisional
Probab=37.93 E-value=1.1e+02 Score=28.19 Aligned_cols=21 Identities=19% Similarity=0.126 Sum_probs=16.7
Q ss_pred cCeEEEEeeChhhHHHHHhhH
Q 024663 165 AQNAVLSGCSAGGLTSILHCD 185 (264)
Q Consensus 165 a~~VllsG~SAGGlga~~~~d 185 (264)
.+++.|.|+|.||.-+...+.
T Consensus 130 ~~~~~l~GhSmGG~ia~~~a~ 150 (330)
T PRK10749 130 YRKRYALAHSMGGAILTLFLQ 150 (330)
T ss_pred CCCeEEEEEcHHHHHHHHHHH
Confidence 467999999999987765543
No 115
>cd07206 Pat_TGL3-4-5_SDP1 Triacylglycerol lipase 3, 4, and 5 and Sugar-Dependent 1 lipase. Triacylglycerol lipases are involved in triacylglycerol mobilization and degradation; they are found in lipid particles. TGL4 is 30% homologus to TGL3, whereas TGL5 is 26% homologus to TGL3. Sugar-Dependent 1 (SDP1) lipase has a patatin-like acyl-hydrolase domain that initiates the breakdown of storage oil in germinating Arabidopsis seeds. This family includes subfamilies of proteins: TGL3, TGL4, TGL5, and SDP1.
Probab=37.77 E-value=43 Score=31.71 Aligned_cols=29 Identities=31% Similarity=0.457 Sum_probs=21.2
Q ss_pred HHHHHHHhCCCccCeEEEEeeChhhHHHHHhh
Q 024663 153 VMEDLMAKGMKNAQNAVLSGCSAGGLTSILHC 184 (264)
Q Consensus 153 vl~~L~~~gl~~a~~VllsG~SAGGlga~~~~ 184 (264)
|++.|.++++.. =+++|.|||++-+.+.+
T Consensus 87 vl~aL~e~~l~~---~~i~GtSaGAi~aa~~~ 115 (298)
T cd07206 87 VVKALWEQDLLP---RVISGSSAGAIVAALLG 115 (298)
T ss_pred HHHHHHHcCCCC---CEEEEEcHHHHHHHHHH
Confidence 366666666642 26999999999888776
No 116
>PLN02934 triacylglycerol lipase
Probab=37.71 E-value=66 Score=32.82 Aligned_cols=38 Identities=26% Similarity=0.363 Sum_probs=26.9
Q ss_pred HHHHHHHHHHhCCCccCeEEEEeeChhhHHHHHhhHHHHh
Q 024663 150 FQAVMEDLMAKGMKNAQNAVLSGCSAGGLTSILHCDNFRA 189 (264)
Q Consensus 150 ~~avl~~L~~~gl~~a~~VllsG~SAGGlga~~~~d~v~~ 189 (264)
++..++.+++ ..++ .++++||+|-||-=|.+.+..++.
T Consensus 307 v~~~lk~ll~-~~p~-~kIvVTGHSLGGALAtLaA~~L~l 344 (515)
T PLN02934 307 VRSKLKSLLK-EHKN-AKFVVTGHSLGGALAILFPTVLVL 344 (515)
T ss_pred HHHHHHHHHH-HCCC-CeEEEeccccHHHHHHHHHHHHHH
Confidence 5555666665 2344 479999999999888887776654
No 117
>cd07225 Pat_PNPLA6_PNPLA7 Patatin-like phospholipase domain containing protein 6 and protein 7. Patatin-like phospholipase domain containing protein 6 (PNPLA6) and protein 7 (PNPLA7) are 60% identical to each other. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. PNPLA7 is an insulin-regulated phospholipase that is homologous to Neuropathy Target Esterase (NTE or PNPLA6) and is also known as NTE-related esterase (NRE). Human NRE is predominantly expressed in prostate, white adipose, and pancreatic tissue. NRE
Probab=37.48 E-value=39 Score=31.71 Aligned_cols=30 Identities=23% Similarity=0.432 Sum_probs=22.9
Q ss_pred HHHHHHHhCCCccCeEEEEeeChhhHHHHHhhH
Q 024663 153 VMEDLMAKGMKNAQNAVLSGCSAGGLTSILHCD 185 (264)
Q Consensus 153 vl~~L~~~gl~~a~~VllsG~SAGGlga~~~~d 185 (264)
||+.|.++|++ --.++|+|||++=+.+++-
T Consensus 33 vL~aLee~gi~---~d~v~GtSaGAi~ga~ya~ 62 (306)
T cd07225 33 VIKALEEAGIP---VDMVGGTSIGAFIGALYAE 62 (306)
T ss_pred HHHHHHHcCCC---CCEEEEECHHHHHHHHHHc
Confidence 57888877775 3589999999987776654
No 118
>PRK10279 hypothetical protein; Provisional
Probab=37.27 E-value=41 Score=31.59 Aligned_cols=29 Identities=28% Similarity=0.545 Sum_probs=22.3
Q ss_pred HHHHHHHhCCCccCeEEEEeeChhhHHHHHhh
Q 024663 153 VMEDLMAKGMKNAQNAVLSGCSAGGLTSILHC 184 (264)
Q Consensus 153 vl~~L~~~gl~~a~~VllsG~SAGGlga~~~~ 184 (264)
||+.|.++|++ --+++|+|||++=+.+.+
T Consensus 23 VL~aL~E~gi~---~d~i~GtS~GAlvga~yA 51 (300)
T PRK10279 23 VINALKKVGIE---IDIVAGCSIGSLVGAAYA 51 (300)
T ss_pred HHHHHHHcCCC---cCEEEEEcHHHHHHHHHH
Confidence 47788877775 358999999998776655
No 119
>COG2945 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=37.26 E-value=40 Score=30.39 Aligned_cols=40 Identities=18% Similarity=0.110 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHhCCCccCeEEEEeeChhhHHHHHhhHHH
Q 024663 147 ARVFQAVMEDLMAKGMKNAQNAVLSGCSAGGLTSILHCDNF 187 (264)
Q Consensus 147 ~~n~~avl~~L~~~gl~~a~~VllsG~SAGGlga~~~~d~v 187 (264)
..-..++++|+.+ .-+++....|+|.|-|++=+.+-+.+.
T Consensus 85 ~~Da~aaldW~~~-~hp~s~~~~l~GfSFGa~Ia~~la~r~ 124 (210)
T COG2945 85 LEDAAAALDWLQA-RHPDSASCWLAGFSFGAYIAMQLAMRR 124 (210)
T ss_pred HHHHHHHHHHHHh-hCCCchhhhhcccchHHHHHHHHHHhc
Confidence 5678999999998 456666678999999997666544443
No 120
>PF05677 DUF818: Chlamydia CHLPS protein (DUF818); InterPro: IPR008536 This family of unknown function includes several Chlamydia CHLPS proteins and Legionella SidB proteins.
Probab=37.05 E-value=71 Score=31.14 Aligned_cols=53 Identities=23% Similarity=0.308 Sum_probs=36.0
Q ss_pred HHHHHHHHHHh-CCCccCeEEEEeeChhhHHHHHhhHHHHhh-CC--CCceEEEeecccc
Q 024663 150 FQAVMEDLMAK-GMKNAQNAVLSGCSAGGLTSILHCDNFRAL-FP--VGTKVKCFADAGY 205 (264)
Q Consensus 150 ~~avl~~L~~~-gl~~a~~VllsG~SAGGlga~~~~d~v~~~-lp--~~a~v~~l~DSG~ 205 (264)
.+|++++|.++ .=++|+++++-|.|-||.=+. ..+++. +. .+++..++-|-||
T Consensus 198 ~~a~v~yL~d~~~G~ka~~Ii~yG~SLGG~Vqa---~AL~~~~~~~~dgi~~~~ikDRsf 254 (365)
T PF05677_consen 198 YQACVRYLRDEEQGPKAKNIILYGHSLGGGVQA---EALKKEVLKGSDGIRWFLIKDRSF 254 (365)
T ss_pred HHHHHHHHHhcccCCChheEEEeeccccHHHHH---HHHHhcccccCCCeeEEEEecCCc
Confidence 57788888863 235899999999999884322 344432 21 2577778888774
No 121
>PLN02847 triacylglycerol lipase
Probab=36.63 E-value=91 Score=32.57 Aligned_cols=25 Identities=28% Similarity=0.222 Sum_probs=19.5
Q ss_pred CeEEEEeeChhhHHHHHhhHHHHhh
Q 024663 166 QNAVLSGCSAGGLTSILHCDNFRAL 190 (264)
Q Consensus 166 ~~VllsG~SAGGlga~~~~d~v~~~ 190 (264)
-+++|+|+|-||-=|.+-+-.+|+.
T Consensus 251 YkLVITGHSLGGGVAALLAilLRe~ 275 (633)
T PLN02847 251 FKIKIVGHSLGGGTAALLTYILREQ 275 (633)
T ss_pred CeEEEeccChHHHHHHHHHHHHhcC
Confidence 4899999999986666667777753
No 122
>PF05057 DUF676: Putative serine esterase (DUF676); InterPro: IPR007751 This domain, whose function is unknown, is found within a group of putative lipases.
Probab=36.46 E-value=32 Score=30.23 Aligned_cols=47 Identities=17% Similarity=0.285 Sum_probs=30.1
Q ss_pred eeEehHHHHHHHHHHHHHhCCCccCeEEEEeeChhhHHHHHhhHHHHh
Q 024663 142 LHFRGARVFQAVMEDLMAKGMKNAQNAVLSGCSAGGLTSILHCDNFRA 189 (264)
Q Consensus 142 l~frG~~n~~avl~~L~~~gl~~a~~VllsG~SAGGlga~~~~d~v~~ 189 (264)
+.--|.+..+.+.+.+... -....++.+.|+|-||+=+-.-...+.+
T Consensus 55 I~~~g~rL~~eI~~~~~~~-~~~~~~IsfIgHSLGGli~r~al~~~~~ 101 (217)
T PF05057_consen 55 IDVCGERLAEEILEHIKDY-ESKIRKISFIGHSLGGLIARYALGLLHD 101 (217)
T ss_pred hHHHHHHHHHHHHHhcccc-ccccccceEEEecccHHHHHHHHHHhhh
Confidence 3345666677777666542 1224689999999999876655544443
No 123
>cd07208 Pat_hypo_Ecoli_yjju_like Hypothetical patatin similar to yjju protein of Escherichia coli. Patatin-like phospholipase similar to yjju protein of Escherichia coli. This family predominantly consists of bacterial patatin glycoproteins, and some representatives from eukaryotes and archaea. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates.
Probab=36.35 E-value=43 Score=30.08 Aligned_cols=30 Identities=23% Similarity=0.471 Sum_probs=21.2
Q ss_pred HHHHHHHHhCCCccCeEEEEeeChhhHHHHHh
Q 024663 152 AVMEDLMAKGMKNAQNAVLSGCSAGGLTSILH 183 (264)
Q Consensus 152 avl~~L~~~gl~~a~~VllsG~SAGGlga~~~ 183 (264)
-||+.|.++++. .==+++|.|||++=+...
T Consensus 15 Gvl~al~e~~~~--~fd~i~GtSaGAi~a~~~ 44 (266)
T cd07208 15 GVLDAFLEAGIR--PFDLVIGVSAGALNAASY 44 (266)
T ss_pred HHHHHHHHcCCC--CCCEEEEECHHHHhHHHH
Confidence 357777776665 223899999999876654
No 124
>cd01819 Patatin_and_cPLA2 Patatins and Phospholipases. Patatin-like phospholipase. This family consists of various patatin glycoproteins from plants. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates. This family also includes the catalytic domain of cytosolic phospholipase A2 (PLA2; EC 3.1.1.4) hydrolyzes the sn-2-acyl ester bond of phospholipids to release arachidonic acid. At the active site, cPLA2 contains a serine nucleophile through which the catalytic mechanism is initiated. The active site is partially covered by a solvent-accessible flexible lid. cPLA2 displays interfacial activation as it exists in both "closed lid" and "open lid" forms.
Probab=36.29 E-value=54 Score=27.26 Aligned_cols=32 Identities=22% Similarity=0.355 Sum_probs=23.2
Q ss_pred HHHHHHHHhCCCccCeEEEEeeChhhHHHHHhh
Q 024663 152 AVMEDLMAKGMKNAQNAVLSGCSAGGLTSILHC 184 (264)
Q Consensus 152 avl~~L~~~gl~~a~~VllsG~SAGGlga~~~~ 184 (264)
-+++.|.++++.+ .--.++|.|||++-+...+
T Consensus 15 gvl~~l~~~~~~~-~~~~~~G~SaGa~~~~~~~ 46 (155)
T cd01819 15 GVLSALAERGLLD-CVTYLAGTSGGAWVAATLY 46 (155)
T ss_pred HHHHHHHHhCCcc-CCCEEEEEcHHHHHHHHHh
Confidence 3567777666542 3358899999999888776
No 125
>PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A ....
Probab=36.13 E-value=64 Score=26.52 Aligned_cols=36 Identities=22% Similarity=0.266 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHhCCCccCeEEEEeeChhhHHHHHhhHH
Q 024663 149 VFQAVMEDLMAKGMKNAQNAVLSGCSAGGLTSILHCDN 186 (264)
Q Consensus 149 n~~avl~~L~~~gl~~a~~VllsG~SAGGlga~~~~d~ 186 (264)
-+.+.++.+++ .++..+ +.+.|.|.||.=+...+..
T Consensus 29 ~~~~~~~~~~~-~l~~~~-~~~vG~S~Gg~~~~~~a~~ 64 (230)
T PF00561_consen 29 DLAADLEALRE-ALGIKK-INLVGHSMGGMLALEYAAQ 64 (230)
T ss_dssp HHHHHHHHHHH-HHTTSS-EEEEEETHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HhCCCC-eEEEEECCChHHHHHHHHH
Confidence 44455555554 233333 9999999999777665544
No 126
>PRK10985 putative hydrolase; Provisional
Probab=36.06 E-value=1e+02 Score=28.30 Aligned_cols=33 Identities=15% Similarity=0.045 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHhCCCccCeEEEEeeChhhHHHHH
Q 024663 148 RVFQAVMEDLMAKGMKNAQNAVLSGCSAGGLTSIL 182 (264)
Q Consensus 148 ~n~~avl~~L~~~gl~~a~~VllsG~SAGGlga~~ 182 (264)
..+.++++++.++ ++ .+++++.|.|.||.=+..
T Consensus 115 ~D~~~~i~~l~~~-~~-~~~~~~vG~S~GG~i~~~ 147 (324)
T PRK10985 115 EDARFFLRWLQRE-FG-HVPTAAVGYSLGGNMLAC 147 (324)
T ss_pred HHHHHHHHHHHHh-CC-CCCEEEEEecchHHHHHH
Confidence 4577788888863 33 356999999999964433
No 127
>KOG2564 consensus Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]
Probab=35.80 E-value=58 Score=31.21 Aligned_cols=38 Identities=24% Similarity=0.367 Sum_probs=24.2
Q ss_pred HHHHHHHHHhCCCccCeEEEEeeChhhHHHHHhhHHHHhhCCC
Q 024663 151 QAVMEDLMAKGMKNAQNAVLSGCSAGGLTSILHCDNFRALFPV 193 (264)
Q Consensus 151 ~avl~~L~~~gl~~a~~VllsG~SAGGlga~~~~d~v~~~lp~ 193 (264)
-++++.|.. ..+.+|+|.|+|.||-=+ -.-.....+|+
T Consensus 134 ~~~i~~~fg---e~~~~iilVGHSmGGaIa--v~~a~~k~lps 171 (343)
T KOG2564|consen 134 GAVIKELFG---ELPPQIILVGHSMGGAIA--VHTAASKTLPS 171 (343)
T ss_pred HHHHHHHhc---cCCCceEEEeccccchhh--hhhhhhhhchh
Confidence 355665553 456679999999998433 22334556774
No 128
>TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=35.40 E-value=82 Score=25.81 Aligned_cols=21 Identities=33% Similarity=0.396 Sum_probs=16.5
Q ss_pred cCeEEEEeeChhhHHHHHhhH
Q 024663 165 AQNAVLSGCSAGGLTSILHCD 185 (264)
Q Consensus 165 a~~VllsG~SAGGlga~~~~d 185 (264)
.++|.|.|.|.||.-++..+.
T Consensus 78 ~~~v~liG~S~Gg~~a~~~a~ 98 (251)
T TIGR02427 78 IERAVFCGLSLGGLIAQGLAA 98 (251)
T ss_pred CCceEEEEeCchHHHHHHHHH
Confidence 367999999999987765543
No 129
>COG0627 Predicted esterase [General function prediction only]
Probab=35.23 E-value=40 Score=31.98 Aligned_cols=26 Identities=19% Similarity=0.294 Sum_probs=20.4
Q ss_pred eEEEEeeChhhHHHHHhhHHHHhhCC
Q 024663 167 NAVLSGCSAGGLTSILHCDNFRALFP 192 (264)
Q Consensus 167 ~VllsG~SAGGlga~~~~d~v~~~lp 192 (264)
+--++|.|.||.||+..+-+--++|+
T Consensus 153 ~~aI~G~SMGG~GAl~lA~~~pd~f~ 178 (316)
T COG0627 153 GRAIAGHSMGGYGALKLALKHPDRFK 178 (316)
T ss_pred CceeEEEeccchhhhhhhhhCcchhc
Confidence 78999999999999986655445553
No 130
>KOG4389 consensus Acetylcholinesterase/Butyrylcholinesterase [Signal transduction mechanisms]
Probab=35.23 E-value=59 Score=33.34 Aligned_cols=122 Identities=17% Similarity=0.150 Sum_probs=74.0
Q ss_pred EEEecCCCCccCCCccc-ccCC---------------------CceeE---------ehHHHHHHHHHHHHHh--CC-Cc
Q 024663 119 IKVRYCDGASFTGDVEA-VNPA---------------------NNLHF---------RGARVFQAVMEDLMAK--GM-KN 164 (264)
Q Consensus 119 V~vpYCdGd~~~Gd~~~-~~~~---------------------~~l~f---------rG~~n~~avl~~L~~~--gl-~~ 164 (264)
|.|.-=-|..++|..+- +|.| .=||+ .|.--=+-+|.|+.++ -| ++
T Consensus 137 VlVWiyGGGF~sGt~SLdvYdGk~la~~envIvVs~NYRvG~FGFL~l~~~~eaPGNmGl~DQqLAl~WV~~Ni~aFGGn 216 (601)
T KOG4389|consen 137 VLVWIYGGGFYSGTPSLDVYDGKFLAAVENVIVVSMNYRVGAFGFLYLPGHPEAPGNMGLLDQQLALQWVQENIAAFGGN 216 (601)
T ss_pred EEEEEEcCccccCCcceeeeccceeeeeccEEEEEeeeeeccceEEecCCCCCCCCccchHHHHHHHHHHHHhHHHhCCC
Confidence 77877788888887652 2221 11343 3444456678898873 23 68
Q ss_pred cCeEEEEeeChhhHHHHHhhH--HHHhhCCCCceEEEeeccccccccCCCCCchhHHHHHHHHHHhccccCCch----hh
Q 024663 165 AQNAVLSGCSAGGLTSILHCD--NFRALFPVGTKVKCFADAGYFINAKDVSGASHIEQFYAQVVATHVHTLFLT----LC 238 (264)
Q Consensus 165 a~~VllsG~SAGGlga~~~~d--~v~~~lp~~a~v~~l~DSG~fld~~~~~g~~~~~~~~~~~~~~~~~~~~lp----~C 238 (264)
+++|-|.|.|||+-.+.+|.= --|..+ -++|.-||-+-+.-.+.....++..-..+.++-|+.+.=+ +|
T Consensus 217 p~~vTLFGESAGaASv~aHLlsP~S~glF-----~raIlQSGS~~~pWA~~s~~~A~~~s~~La~lvgC~~~~~~~i~~C 291 (601)
T KOG4389|consen 217 PSRVTLFGESAGAASVVAHLLSPGSRGLF-----HRAILQSGSLNNPWAIVSPGEARQRSTALANLVGCNKTNDTEIVAC 291 (601)
T ss_pred cceEEEeccccchhhhhheecCCCchhhH-----HHHHhhcCCCCCCccccChHHHHHHHHHHHHHhCCCCCChHHHHHH
Confidence 999999999999987777631 111111 1345667766665555555555555556666666655332 27
Q ss_pred ccCCCch
Q 024663 239 HAYTDKL 245 (264)
Q Consensus 239 ~~~~~p~ 245 (264)
.-..+|.
T Consensus 292 lR~~~a~ 298 (601)
T KOG4389|consen 292 LRSVPAQ 298 (601)
T ss_pred HhcCCHH
Confidence 7665553
No 131
>cd07213 Pat17_PNPLA8_PNPLA9_like1 Patatin-like phospholipase. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=35.11 E-value=62 Score=29.69 Aligned_cols=35 Identities=17% Similarity=0.188 Sum_probs=21.8
Q ss_pred HHHHHHHHHHhCCCccCe-EEEEeeChhhHHHHHhh
Q 024663 150 FQAVMEDLMAKGMKNAQN-AVLSGCSAGGLTSILHC 184 (264)
Q Consensus 150 ~~avl~~L~~~gl~~a~~-VllsG~SAGGlga~~~~ 184 (264)
--.+|+.|.+++.+-.+. =+++|.||||+=+...+
T Consensus 17 ~~~vL~~Le~~~~~~~~~fD~i~GTSaGaiia~~la 52 (288)
T cd07213 17 QLVLLKRLAEEFPSFLDQIDLFAGTSAGSLIALGLA 52 (288)
T ss_pred HHHHHHHHHHhCcccccceeEEEEeCHHHHHHHHHH
Confidence 345677777653211122 28999999998776543
No 132
>cd07232 Pat_PLPL Patain-like phospholipase. Patatin-like phospholipase. This family consists of various patatin glycoproteins from plants and fungi. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have been found also in vertebrates.
Probab=34.68 E-value=49 Score=32.49 Aligned_cols=31 Identities=32% Similarity=0.596 Sum_probs=22.6
Q ss_pred HHHHHHHHhCCCccCeEEEEeeChhhHHHHHhhH
Q 024663 152 AVMEDLMAKGMKNAQNAVLSGCSAGGLTSILHCD 185 (264)
Q Consensus 152 avl~~L~~~gl~~a~~VllsG~SAGGlga~~~~d 185 (264)
-|++-|.++++. + =+++|.|||++-+.+.+-
T Consensus 84 GVlkaL~e~gll-p--~iI~GtSAGAivaalla~ 114 (407)
T cd07232 84 GVVKALLDADLL-P--NVISGTSGGSLVAALLCT 114 (407)
T ss_pred HHHHHHHhCCCC-C--CEEEEECHHHHHHHHHHc
Confidence 357777776654 2 259999999998877665
No 133
>TIGR01392 homoserO_Ac_trn homoserine O-acetyltransferase. This family describes homoserine-O-acetyltransferase, an enzyme of methionine biosynthesis. This model has been rebuilt to identify sequences more broadly, including a number of sequences suggested to be homoserine O-acetyltransferase based on proximity to other Met biosynthesis genes.
Probab=34.61 E-value=1e+02 Score=28.53 Aligned_cols=37 Identities=16% Similarity=0.287 Sum_probs=24.4
Q ss_pred Ce-EEEEeeChhhHHHHHhhHHHHhhCCCCceEEEeeccccc
Q 024663 166 QN-AVLSGCSAGGLTSILHCDNFRALFPVGTKVKCFADAGYF 206 (264)
Q Consensus 166 ~~-VllsG~SAGGlga~~~~d~v~~~lp~~a~v~~l~DSG~f 206 (264)
++ ++|.|+|.||.=++..+.. .|..++-.++.|+...
T Consensus 126 ~~~~~l~G~S~Gg~ia~~~a~~----~p~~v~~lvl~~~~~~ 163 (351)
T TIGR01392 126 EQIAAVVGGSMGGMQALEWAID----YPERVRAIVVLATSAR 163 (351)
T ss_pred CCceEEEEECHHHHHHHHHHHH----ChHhhheEEEEccCCc
Confidence 45 9999999999777665543 3544444555666544
No 134
>cd07221 Pat_PNPLA3 Patatin-like phospholipase domain containing protein 3. PNPLA3 is a triacylglycerol lipase that mediates triacylglycerol hydrolysis in adipocytes and is an indicator of the nutritional state. PNPLA3 is also known as adiponutrin (ADPN) or iPLA2-epsilon. Human adiponutrins are bound to the cell membrane of adipocytes and show transacylase, TG hydrolase, and PLA2 activity. This family includes patatin-like proteins: ADPN (adiponutrin) from mammals, PNPLA3 (Patatin-like phospholipase domain-containing protein 3), and iPLA2-epsilon (Calcium-independent phospholipase A2) from Homo sapiens.
Probab=34.46 E-value=47 Score=30.31 Aligned_cols=32 Identities=22% Similarity=0.245 Sum_probs=20.4
Q ss_pred HHHHHHHhCCCcc-CeEEEEeeChhhHHHHHhh
Q 024663 153 VMEDLMAKGMKNA-QNAVLSGCSAGGLTSILHC 184 (264)
Q Consensus 153 vl~~L~~~gl~~a-~~VllsG~SAGGlga~~~~ 184 (264)
|++-|++++..-- +--.++|.|||++-+...+
T Consensus 18 Vl~aL~e~~~~l~~~~~~i~GtSAGAl~aa~~a 50 (252)
T cd07221 18 VTRCLSERAPHLLRDARMFFGASAGALHCVTFL 50 (252)
T ss_pred HHHHHHHhCcchhccCCEEEEEcHHHHHHHHHH
Confidence 3666665432211 1247999999999887664
No 135
>KOG3101 consensus Esterase D [General function prediction only]
Probab=34.46 E-value=16 Score=33.68 Aligned_cols=36 Identities=19% Similarity=0.347 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHH----hCCC-ccCeEEEEeeChhhHHHHH
Q 024663 147 ARVFQAVMEDLMA----KGMK-NAQNAVLSGCSAGGLTSIL 182 (264)
Q Consensus 147 ~~n~~avl~~L~~----~gl~-~a~~VllsG~SAGGlga~~ 182 (264)
+|..+-|.++|.+ ..++ ++.++=++|+|.||.||+.
T Consensus 117 yrMYdYv~kELp~~l~~~~~pld~~k~~IfGHSMGGhGAl~ 157 (283)
T KOG3101|consen 117 YRMYDYVVKELPQLLNSANVPLDPLKVGIFGHSMGGHGALT 157 (283)
T ss_pred hhHHHHHHHHHHHHhccccccccchhcceeccccCCCceEE
Confidence 3444555555543 2232 4567899999999999975
No 136
>PLN02578 hydrolase
Probab=34.21 E-value=1.3e+02 Score=28.15 Aligned_cols=39 Identities=31% Similarity=0.399 Sum_probs=23.9
Q ss_pred cCeEEEEeeChhhHHHHHhhHHHHhhCCCCceEEEeec-ccccc
Q 024663 165 AQNAVLSGCSAGGLTSILHCDNFRALFPVGTKVKCFAD-AGYFI 207 (264)
Q Consensus 165 a~~VllsG~SAGGlga~~~~d~v~~~lp~~a~v~~l~D-SG~fl 207 (264)
.++++|.|+|.||+=+...+.. .|..++-.++.+ ++.+.
T Consensus 151 ~~~~~lvG~S~Gg~ia~~~A~~----~p~~v~~lvLv~~~~~~~ 190 (354)
T PLN02578 151 KEPAVLVGNSLGGFTALSTAVG----YPELVAGVALLNSAGQFG 190 (354)
T ss_pred cCCeEEEEECHHHHHHHHHHHh----ChHhcceEEEECCCcccc
Confidence 3679999999999866554443 444333334444 44443
No 137
>TIGR03343 biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase. Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself.
Probab=34.15 E-value=91 Score=27.09 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=18.4
Q ss_pred ccCeEEEEeeChhhHHHHHhhHH
Q 024663 164 NAQNAVLSGCSAGGLTSILHCDN 186 (264)
Q Consensus 164 ~a~~VllsG~SAGGlga~~~~d~ 186 (264)
..+++.|.|+|.||.=++..+..
T Consensus 99 ~~~~~~lvG~S~Gg~ia~~~a~~ 121 (282)
T TIGR03343 99 DIEKAHLVGNSMGGATALNFALE 121 (282)
T ss_pred CCCCeeEEEECchHHHHHHHHHh
Confidence 34689999999999888876643
No 138
>PF12715 Abhydrolase_7: Abhydrolase family; PDB: 3NUZ_C 3G8Y_A.
Probab=34.08 E-value=40 Score=33.15 Aligned_cols=39 Identities=15% Similarity=0.199 Sum_probs=27.8
Q ss_pred EehHHHHHH--HHHHHHHhCCCccCeEEEEeeChhhHHHHH
Q 024663 144 FRGARVFQA--VMEDLMAKGMKNAQNAVLSGCSAGGLTSIL 182 (264)
Q Consensus 144 frG~~n~~a--vl~~L~~~gl~~a~~VllsG~SAGGlga~~ 182 (264)
+-|..+++. ++|+|.+.-.-++++|-++|.|.||+=|.+
T Consensus 202 ~~G~~~~ddmr~lDfL~slpeVD~~RIG~~GfSmGg~~a~~ 242 (390)
T PF12715_consen 202 LAGLMAWDDMRALDFLASLPEVDPDRIGCMGFSMGGYRAWW 242 (390)
T ss_dssp HHHHHHHHHHHHHHHHCT-TTEEEEEEEEEEEGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCcccCccceEEEeecccHHHHHH
Confidence 445555544 478887644457899999999999987654
No 139
>cd07231 Pat_SDP1-like Sugar-Dependent 1 like lipase. Sugar-Dependent 1 (SDP1) lipase has a patatin-like acyl-hydrolase domain that initiates the breakdown of storage oil in germinating Arabidopsis seeds. This acyl-hydrolase domain is homologus to yeast triacylglycerol lipase 3 and human adipose triglyceride lipase. This family includes SDP1 from Arabidopsis thaliana.
Probab=34.02 E-value=53 Score=31.51 Aligned_cols=30 Identities=20% Similarity=0.404 Sum_probs=21.5
Q ss_pred HHHHHHHhCCCccCeEEEEeeChhhHHHHHhhH
Q 024663 153 VMEDLMAKGMKNAQNAVLSGCSAGGLTSILHCD 185 (264)
Q Consensus 153 vl~~L~~~gl~~a~~VllsG~SAGGlga~~~~d 185 (264)
|++-|.++|+.. -+++|+|||++-+.+.+-
T Consensus 86 VlkaL~e~gl~p---~~i~GsSaGAivaa~~~~ 115 (323)
T cd07231 86 VVRTLVEHQLLP---RVIAGSSVGSIVCAIIAT 115 (323)
T ss_pred HHHHHHHcCCCC---CEEEEECHHHHHHHHHHc
Confidence 366666667643 259999999998877654
No 140
>KOG1552 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=33.49 E-value=1e+02 Score=28.68 Aligned_cols=41 Identities=22% Similarity=0.334 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHhCCCccCeEEEEeeChhhHHHHHhhHHHHhhCC
Q 024663 147 ARVFQAVMEDLMAKGMKNAQNAVLSGCSAGGLTSILHCDNFRALFP 192 (264)
Q Consensus 147 ~~n~~avl~~L~~~gl~~a~~VllsG~SAGGlga~~~~d~v~~~lp 192 (264)
+.-++|+.+||.+ ..++.++|+|-|.|.|..-++ +++.+.|
T Consensus 112 y~Di~avye~Lr~-~~g~~~~Iil~G~SiGt~~tv----~Lasr~~ 152 (258)
T KOG1552|consen 112 YADIKAVYEWLRN-RYGSPERIILYGQSIGTVPTV----DLASRYP 152 (258)
T ss_pred hhhHHHHHHHHHh-hcCCCceEEEEEecCCchhhh----hHhhcCC
Confidence 4568999999997 334889999999999997643 4555555
No 141
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=32.78 E-value=1.3e+02 Score=28.66 Aligned_cols=57 Identities=19% Similarity=0.229 Sum_probs=39.7
Q ss_pred ceeEehHHHHHHHHHHHHHhCCCccCeEEEEeeChhhHHHHHhhHHHHhhCCC-CceEEEeecccc
Q 024663 141 NLHFRGARVFQAVMEDLMAKGMKNAQNAVLSGCSAGGLTSILHCDNFRALFPV-GTKVKCFADAGY 205 (264)
Q Consensus 141 ~l~frG~~n~~avl~~L~~~gl~~a~~VllsG~SAGGlga~~~~d~v~~~lp~-~a~v~~l~DSG~ 205 (264)
.++.....-.-+...+|.+ ++=++.|.|.|+ ++.-+-.+++.+++ ..-|.+++|+|.
T Consensus 238 ~v~~V~d~~A~~~~r~La~------~eGilvG~SsGA--~~~aa~~~a~~~~~g~~IVti~pD~G~ 295 (300)
T COG0031 238 EVIRVSDEEAIATARRLAR------EEGLLVGISSGA--ALAAALKLAKELPAGKTIVTILPDSGE 295 (300)
T ss_pred eEEEECHHHHHHHHHHHHH------HhCeeecccHHH--HHHHHHHHHHhcCCCCeEEEEECCCcc
Confidence 4555555556666677775 356888888886 55566778888874 446788899983
No 142
>PRK11071 esterase YqiA; Provisional
Probab=32.58 E-value=98 Score=26.44 Aligned_cols=34 Identities=21% Similarity=0.222 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHhCCCccCeEEEEeeChhhHHHHHhh
Q 024663 149 VFQAVMEDLMAKGMKNAQNAVLSGCSAGGLTSILHC 184 (264)
Q Consensus 149 n~~avl~~L~~~gl~~a~~VllsG~SAGGlga~~~~ 184 (264)
.+.+.++++++. ++ .+++++.|+|.||.=+..-+
T Consensus 46 ~~~~~l~~l~~~-~~-~~~~~lvG~S~Gg~~a~~~a 79 (190)
T PRK11071 46 DAAELLESLVLE-HG-GDPLGLVGSSLGGYYATWLS 79 (190)
T ss_pred HHHHHHHHHHHH-cC-CCCeEEEEECHHHHHHHHHH
Confidence 355556666652 22 35799999999998776544
No 143
>PRK03204 haloalkane dehalogenase; Provisional
Probab=32.36 E-value=1.2e+02 Score=27.22 Aligned_cols=50 Identities=10% Similarity=0.056 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHhCCCccCeEEEEeeChhhHHHHHhhHHHHhhCCCCceEEEeeccc
Q 024663 149 VFQAVMEDLMAKGMKNAQNAVLSGCSAGGLTSILHCDNFRALFPVGTKVKCFADAG 204 (264)
Q Consensus 149 n~~avl~~L~~~gl~~a~~VllsG~SAGGlga~~~~d~v~~~lp~~a~v~~l~DSG 204 (264)
.+.+.+.+++++ + ..+++++.|+|.||.=+...+- ..|..++-.++.+++
T Consensus 86 ~~~~~~~~~~~~-~-~~~~~~lvG~S~Gg~va~~~a~----~~p~~v~~lvl~~~~ 135 (286)
T PRK03204 86 EHARVIGEFVDH-L-GLDRYLSMGQDWGGPISMAVAV----ERADRVRGVVLGNTW 135 (286)
T ss_pred HHHHHHHHHHHH-h-CCCCEEEEEECccHHHHHHHHH----hChhheeEEEEECcc
Confidence 345555555542 3 3367999999999975544432 344333333444544
No 144
>PRK03592 haloalkane dehalogenase; Provisional
Probab=32.34 E-value=1.5e+02 Score=26.25 Aligned_cols=34 Identities=24% Similarity=0.261 Sum_probs=23.4
Q ss_pred CeEEEEeeChhhHHHHHhhHHHHhhCCCCceEEEeecc
Q 024663 166 QNAVLSGCSAGGLTSILHCDNFRALFPVGTKVKCFADA 203 (264)
Q Consensus 166 ~~VllsG~SAGGlga~~~~d~v~~~lp~~a~v~~l~DS 203 (264)
++++|.|.|.||.=++..+ .+.|..++-.++.++
T Consensus 93 ~~~~lvGhS~Gg~ia~~~a----~~~p~~v~~lil~~~ 126 (295)
T PRK03592 93 DDVVLVGHDWGSALGFDWA----ARHPDRVRGIAFMEA 126 (295)
T ss_pred CCeEEEEECHHHHHHHHHH----HhChhheeEEEEECC
Confidence 6799999999998776543 445655554455555
No 145
>KOG4391 consensus Predicted alpha/beta hydrolase BEM46 [General function prediction only]
Probab=32.32 E-value=17 Score=33.68 Aligned_cols=43 Identities=26% Similarity=0.246 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHhCCCccCeEEEEeeChhhHHHHHhhHHHHhhC
Q 024663 149 VFQAVMEDLMAKGMKNAQNAVLSGCSAGGLTSILHCDNFRALF 191 (264)
Q Consensus 149 n~~avl~~L~~~gl~~a~~VllsG~SAGGlga~~~~d~v~~~l 191 (264)
--+++||+|+.+..-+-++++|.|-|-||.=|+.-+...++++
T Consensus 132 Ds~avldyl~t~~~~dktkivlfGrSlGGAvai~lask~~~ri 174 (300)
T KOG4391|consen 132 DSEAVLDYLMTRPDLDKTKIVLFGRSLGGAVAIHLASKNSDRI 174 (300)
T ss_pred cHHHHHHHHhcCccCCcceEEEEecccCCeeEEEeeccchhhe
Confidence 4789999999865666789999999999976665555554443
No 146
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=32.29 E-value=46 Score=27.55 Aligned_cols=11 Identities=45% Similarity=0.773 Sum_probs=9.7
Q ss_pred EEEEeeChhhH
Q 024663 168 AVLSGCSAGGL 178 (264)
Q Consensus 168 VllsG~SAGGl 178 (264)
+++.|.|||+.
T Consensus 70 ~vi~G~SAGA~ 80 (154)
T PF03575_consen 70 GVIIGTSAGAM 80 (154)
T ss_dssp SEEEEETHHHH
T ss_pred CEEEEEChHHh
Confidence 78999999993
No 147
>TIGR01836 PHA_synth_III_C poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit. This model represents the PhaC subunit of a heterodimeric form of polyhydroxyalkanoic acid (PHA) synthase. Excepting the PhaC of Bacillus megaterium (which needs PhaR), all members require PhaE (TIGR01834) for activity and are designated class III. This enzyme builds ester polymers for carbon and energy storage that accumulate in inclusions, and both this enzyme and the depolymerase associate with the inclusions. Class III enzymes polymerize short-chain-length hydroxyalkanoates.
Probab=32.24 E-value=60 Score=30.21 Aligned_cols=34 Identities=15% Similarity=0.214 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHhCCCccCeEEEEeeChhhHHHHHhh
Q 024663 149 VFQAVMEDLMAKGMKNAQNAVLSGCSAGGLTSILHC 184 (264)
Q Consensus 149 n~~avl~~L~~~gl~~a~~VllsG~SAGGlga~~~~ 184 (264)
-+.++++++.++ ...+++.+.|+|.||.=+...+
T Consensus 121 ~~~~~v~~l~~~--~~~~~i~lvGhS~GG~i~~~~~ 154 (350)
T TIGR01836 121 YIDKCVDYICRT--SKLDQISLLGICQGGTFSLCYA 154 (350)
T ss_pred HHHHHHHHHHHH--hCCCcccEEEECHHHHHHHHHH
Confidence 367778888863 2457899999999998776543
No 148
>PRK11126 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; Provisional
Probab=32.15 E-value=1.8e+02 Score=24.55 Aligned_cols=22 Identities=27% Similarity=0.227 Sum_probs=17.3
Q ss_pred ccCeEEEEeeChhhHHHHHhhH
Q 024663 164 NAQNAVLSGCSAGGLTSILHCD 185 (264)
Q Consensus 164 ~a~~VllsG~SAGGlga~~~~d 185 (264)
..++++|.|.|.||.=++.-+-
T Consensus 64 ~~~~~~lvG~S~Gg~va~~~a~ 85 (242)
T PRK11126 64 NILPYWLVGYSLGGRIAMYYAC 85 (242)
T ss_pred CCCCeEEEEECHHHHHHHHHHH
Confidence 3478999999999977766444
No 149
>COG1509 KamA Lysine 2,3-aminomutase [Amino acid transport and metabolism]
Probab=31.85 E-value=49 Score=32.27 Aligned_cols=45 Identities=20% Similarity=0.420 Sum_probs=36.4
Q ss_pred EEEecCCCCccCCCcccccCCCceeEehHHHHHHHHHHHHHhCCCccCeEEEEee
Q 024663 119 IKVRYCDGASFTGDVEAVNPANNLHFRGARVFQAVMEDLMAKGMKNAQNAVLSGC 173 (264)
Q Consensus 119 V~vpYCdGd~~~Gd~~~~~~~~~l~frG~~n~~avl~~L~~~gl~~a~~VllsG~ 173 (264)
||=+||.---|.|+... .+ +.+.|+++|+|+.+ -+.-.+|||||.
T Consensus 123 vyCRyCfRr~~~~~~~~-----~~---~~~~~~~al~YIa~--hPeI~eVllSGG 167 (369)
T COG1509 123 VYCRYCFRRRFVGQDNQ-----GF---NKEEWDKALDYIAA--HPEIREVLLSGG 167 (369)
T ss_pred ceeeecccccccccccc-----cC---CHHHHHHHHHHHHc--CchhheEEecCC
Confidence 56789998888886442 21 78899999999995 488899999996
No 150
>TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily. This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase
Probab=31.80 E-value=1.5e+02 Score=24.92 Aligned_cols=21 Identities=24% Similarity=0.134 Sum_probs=16.4
Q ss_pred cCeEEEEeeChhhHHHHHhhH
Q 024663 165 AQNAVLSGCSAGGLTSILHCD 185 (264)
Q Consensus 165 a~~VllsG~SAGGlga~~~~d 185 (264)
.++++|.|+|.||.=++..+.
T Consensus 95 ~~~~~liG~S~Gg~ia~~~a~ 115 (288)
T TIGR01250 95 LDKFYLLGHSWGGMLAQEYAL 115 (288)
T ss_pred CCcEEEEEeehHHHHHHHHHH
Confidence 356999999999987766543
No 151
>PLN02872 triacylglycerol lipase
Probab=31.30 E-value=77 Score=30.81 Aligned_cols=36 Identities=11% Similarity=0.125 Sum_probs=27.3
Q ss_pred EehHHHHHHHHHHHHHhCCCccCeEEEEeeChhhHHHHH
Q 024663 144 FRGARVFQAVMEDLMAKGMKNAQNAVLSGCSAGGLTSIL 182 (264)
Q Consensus 144 frG~~n~~avl~~L~~~gl~~a~~VllsG~SAGGlga~~ 182 (264)
--+..-+.++++++++. . .+++.+.|+|.||.-++.
T Consensus 141 e~a~~Dl~a~id~i~~~--~-~~~v~~VGhS~Gg~~~~~ 176 (395)
T PLN02872 141 ELALYDLAEMIHYVYSI--T-NSKIFIVGHSQGTIMSLA 176 (395)
T ss_pred HHHHHHHHHHHHHHHhc--c-CCceEEEEECHHHHHHHH
Confidence 34446789999998852 2 368999999999987653
No 152
>PF04260 DUF436: Protein of unknown function (DUF436) ; InterPro: IPR006340 Members of this family are uncharacterised proteins of about 180 amino acids from the Bacillus/Clostridium group of Gram-positive bacteria, found in no more than one copy per genome. ; PDB: 1V8D_C.
Probab=31.07 E-value=57 Score=28.55 Aligned_cols=26 Identities=19% Similarity=0.498 Sum_probs=17.8
Q ss_pred HHHHHHHHHHhCCCccCeEEEEeeCh
Q 024663 150 FQAVMEDLMAKGMKNAQNAVLSGCSA 175 (264)
Q Consensus 150 ~~avl~~L~~~gl~~a~~VllsG~SA 175 (264)
+++++++|+++.--++.++++-|||-
T Consensus 3 ~~~~~~El~~~a~l~~g~i~VvGcST 28 (172)
T PF04260_consen 3 LRQALEELLEQANLKPGQIFVVGCST 28 (172)
T ss_dssp HHHHHHHHHHHS---TT-EEEEEE-H
T ss_pred HHHHHHHHHHhcCCCCCCEEEEeeeH
Confidence 67889999986666778999999985
No 153
>PRK06489 hypothetical protein; Provisional
Probab=30.89 E-value=1.1e+02 Score=28.43 Aligned_cols=48 Identities=15% Similarity=0.216 Sum_probs=25.8
Q ss_pred HHHHHHHHHHhCCCccCeE-EEEeeChhhHHHHHhhHHHHhhCCCCceEEEeecc
Q 024663 150 FQAVMEDLMAKGMKNAQNA-VLSGCSAGGLTSILHCDNFRALFPVGTKVKCFADA 203 (264)
Q Consensus 150 ~~avl~~L~~~gl~~a~~V-llsG~SAGGlga~~~~d~v~~~lp~~a~v~~l~DS 203 (264)
.+.+++.+++ .++ .+++ +|.|.|.||.=++..+ .+.|..++-.++.++
T Consensus 139 a~~~~~~l~~-~lg-i~~~~~lvG~SmGG~vAl~~A----~~~P~~V~~LVLi~s 187 (360)
T PRK06489 139 VEAQYRLVTE-GLG-VKHLRLILGTSMGGMHAWMWG----EKYPDFMDALMPMAS 187 (360)
T ss_pred HHHHHHHHHH-hcC-CCceeEEEEECHHHHHHHHHH----HhCchhhheeeeecc
Confidence 4444444443 222 2455 6999999997666544 335544333334444
No 154
>cd07386 MPP_DNA_pol_II_small_archeal_C archeal DNA polymerase II, small subunit, C-terminal metallophosphatase domain. The small subunit of the archeal DNA polymerase II contains a C-terminal metallophosphatase domain. This domain is thought to be functionally active because the active site residues required for phosphoesterase activity in other members of this superfamily are intact. The archeal replicative DNA polymerases are thought to possess intrinsic phosphatase activity that hydrolyzes the pyrophosphate released during nucleotide polymerization. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiestera
Probab=30.89 E-value=1.5e+02 Score=26.16 Aligned_cols=32 Identities=13% Similarity=0.190 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHHHHhC--CCccCeEEEEeeChhh
Q 024663 146 GARVFQAVMEDLMAKG--MKNAQNAVLSGCSAGG 177 (264)
Q Consensus 146 G~~n~~avl~~L~~~g--l~~a~~VllsG~SAGG 177 (264)
+...++..+++|.... -.+++.|+++|...-.
T Consensus 15 ~~~~~~~l~~~l~~~~~~~~~~d~lvi~GDl~d~ 48 (243)
T cd07386 15 LEDAFEKFVRWLNGEDDSASRVKYLIIAGDLVDG 48 (243)
T ss_pred hHHHHHHHHHHHcCCcccccCccEEEEeCCcccc
Confidence 3456778888877411 1257999999987765
No 155
>PF01083 Cutinase: Cutinase; InterPro: IPR000675 Aerial plant organs are protected by a cuticle composed of an insoluble polymeric structural compound, cutin, which is a polyester composed of hydroxy and hydroxyepoxy fatty acids []. Plant pathogenic fungi produce extracellular degradative enzymes [] that play an important role in pathogenesis. They include cutinase, which hydrolyses cutin, facilitating fungus penetration through the cuticle. Inhibition of the enzyme can prevent fungal infection through intact cuticles. Cutin monomers released from the cuticle by small amounts of cutinase on fungal spore surfaces can greatly increase the amount of cutinase secreted by the spore, the mechanism for which process is as yet unknown [, ]. Cutinase is a serine esterase containing the classical Ser, His, Asp triad of serine hydrolases []. The protein belongs to the alpha-beta class, with a central beta-sheet of 5 parallel strands covered by 5 helices on either side of the sheet. The active site cleft is partly covered by 2 thin bridges formed by amino acid side chains, by contrast with the hydrophobic lid possessed by other lipases []. The protein also contains 2 disulphide bridges, which are essential for activity, their cleavage resulting in complete loss of enzymatic activity []. Two cutinase-like proteins (MtCY39.35 and MtCY339.08c) have been found in the genome of the bacteria Mycobacterium tuberculosis.; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 1XZK_A 1XZA_A 1CUD_C 1XZI_A 1XZH_A 1CUF_A 1FFD_A 2CUT_A 1FFA_A 1CUA_A ....
Probab=30.59 E-value=2e+02 Score=24.63 Aligned_cols=40 Identities=23% Similarity=0.302 Sum_probs=29.4
Q ss_pred ehHHHHHHHHHHHHHhCCCccCeEEEEeeChhhHHHHHhhHH
Q 024663 145 RGARVFQAVMEDLMAKGMKNAQNAVLSGCSAGGLTSILHCDN 186 (264)
Q Consensus 145 rG~~n~~avl~~L~~~gl~~a~~VllsG~SAGGlga~~~~d~ 186 (264)
.|..++...+++..++ -++ .+++|+|.|-|+.-+-.....
T Consensus 62 ~G~~~~~~~i~~~~~~-CP~-~kivl~GYSQGA~V~~~~~~~ 101 (179)
T PF01083_consen 62 AGVANLVRLIEEYAAR-CPN-TKIVLAGYSQGAMVVGDALSG 101 (179)
T ss_dssp HHHHHHHHHHHHHHHH-STT-SEEEEEEETHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh-CCC-CCEEEEecccccHHHHHHHHh
Confidence 4677888888877763 343 589999999999776655444
No 156
>cd07227 Pat_Fungal_NTE1 Fungal patatin-like phospholipase domain containing protein 6. These are fungal Neuropathy Target Esterase (NTE), commonly referred to as NTE1. Patatin-like phospholipase. NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. This family includes NTE1 from fungi.
Probab=29.77 E-value=64 Score=29.83 Aligned_cols=30 Identities=20% Similarity=0.357 Sum_probs=22.2
Q ss_pred HHHHHHHhCCCccCeEEEEeeChhhHHHHHhhH
Q 024663 153 VMEDLMAKGMKNAQNAVLSGCSAGGLTSILHCD 185 (264)
Q Consensus 153 vl~~L~~~gl~~a~~VllsG~SAGGlga~~~~d 185 (264)
||+.|.++|++ -=+++|.|||++=+.+.+-
T Consensus 28 VL~aLeE~gi~---~d~v~GtSaGAiiga~ya~ 57 (269)
T cd07227 28 ILQALEEAGIP---IDAIGGTSIGSFVGGLYAR 57 (269)
T ss_pred HHHHHHHcCCC---ccEEEEECHHHHHHHHHHc
Confidence 47777776775 3489999999987766654
No 157
>COG2382 Fes Enterochelin esterase and related enzymes [Inorganic ion transport and metabolism]
Probab=29.43 E-value=1e+02 Score=29.30 Aligned_cols=65 Identities=20% Similarity=0.230 Sum_probs=44.6
Q ss_pred eEehHHHHHHHHHHHHHh---C---CCccCeEEEEeeChhhHHHHHhhHHHHhhCCCCceEEEeeccccccccCCC
Q 024663 143 HFRGARVFQAVMEDLMAK---G---MKNAQNAVLSGCSAGGLTSILHCDNFRALFPVGTKVKCFADAGYFINAKDV 212 (264)
Q Consensus 143 ~frG~~n~~avl~~L~~~---g---l~~a~~VllsG~SAGGlga~~~~d~v~~~lp~~a~v~~l~DSG~fld~~~~ 212 (264)
+|+=.+-++.+.++|+.. . .+.++.=+|+|.|-||+.+++-+-.-=++| -.+++-||.|.+.+..
T Consensus 148 ~~~n~~~~~~L~~eLlP~v~~~yp~~~~a~~r~L~G~SlGG~vsL~agl~~Pe~F-----G~V~s~Sps~~~~~~~ 218 (299)
T COG2382 148 LHCNEAYWRFLAQELLPYVEERYPTSADADGRVLAGDSLGGLVSLYAGLRHPERF-----GHVLSQSGSFWWTPLD 218 (299)
T ss_pred hcccHHHHHHHHHHhhhhhhccCcccccCCCcEEeccccccHHHHHHHhcCchhh-----ceeeccCCccccCccc
Confidence 344455677778877752 2 346777899999999999887543333333 4677888888887654
No 158
>PLN02761 lipase class 3 family protein
Probab=29.26 E-value=1.2e+02 Score=31.16 Aligned_cols=54 Identities=13% Similarity=0.210 Sum_probs=34.0
Q ss_pred cCeEEEEeeChhhHHHHHhhHHHHhh-CC------CCceEEEeeccccccccCCCCCchhHHHHHHH
Q 024663 165 AQNAVLSGCSAGGLTSILHCDNFRAL-FP------VGTKVKCFADAGYFINAKDVSGASHIEQFYAQ 224 (264)
Q Consensus 165 a~~VllsG~SAGGlga~~~~d~v~~~-lp------~~a~v~~l~DSG~fld~~~~~g~~~~~~~~~~ 224 (264)
..+|+++|+|-||-=|.+.+.+++.. +. ....|.++.=+++ --|+..+.++++.
T Consensus 293 ~~sItVTGHSLGGALAtLaA~DIa~~gln~~~~~~~~~PVtv~TFGsP------RVGN~~FA~~~d~ 353 (527)
T PLN02761 293 EISITVTGHSLGASLALVSAYDIAELNLNHVPENNYKIPITVFSFSGP------RVGNLRFKERCDE 353 (527)
T ss_pred CceEEEeccchHHHHHHHHHHHHHHhccccccccccCCceEEEEcCCC------CcCCHHHHHHHHh
Confidence 35899999999998888888888753 21 1223555554432 2355555555554
No 159
>cd07229 Pat_TGL3_like Triacylglycerol lipase 3. Triacylglycerol lipase 3 (TGL3) are responsible for all the TAG lipase activity of the lipid particle. Triacylglycerol (TAG) lipases are also necessary for the mobilization of TAG stored in lipid particles. TGL3 contains the consensus sequence motif GXSXG, which is found in lipolytic enzymes. This family includes Tgl3p from Saccharomyces cerevisiae.
Probab=28.78 E-value=68 Score=31.51 Aligned_cols=30 Identities=23% Similarity=0.438 Sum_probs=21.4
Q ss_pred HHHHHHHhCCCccCeEEEEeeChhhHHHHHhhH
Q 024663 153 VMEDLMAKGMKNAQNAVLSGCSAGGLTSILHCD 185 (264)
Q Consensus 153 vl~~L~~~gl~~a~~VllsG~SAGGlga~~~~d 185 (264)
|++-|.++|+..- +++|+|||++=+.+.+.
T Consensus 101 v~kaL~e~gl~p~---~i~GtS~Gaivaa~~a~ 130 (391)
T cd07229 101 VVKALWLRGLLPR---IITGTATGALIAALVGV 130 (391)
T ss_pred HHHHHHHcCCCCc---eEEEecHHHHHHHHHHc
Confidence 3666666666433 59999999987777665
No 160
>KOG1553 consensus Predicted alpha/beta hydrolase BAT5 [General function prediction only]
Probab=28.66 E-value=1.2e+02 Score=30.15 Aligned_cols=74 Identities=18% Similarity=0.254 Sum_probs=45.3
Q ss_pred ehHHHHHHHHHHHHHhCCC-ccCeEEEEeeChhhHHHHHhhHHHHhhCCCCceEEEeeccccccccCCCCCchhHHHHHH
Q 024663 145 RGARVFQAVMEDLMAKGMK-NAQNAVLSGCSAGGLTSILHCDNFRALFPVGTKVKCFADAGYFINAKDVSGASHIEQFYA 223 (264)
Q Consensus 145 rG~~n~~avl~~L~~~gl~-~a~~VllsG~SAGGlga~~~~d~v~~~lp~~a~v~~l~DSG~fld~~~~~g~~~~~~~~~ 223 (264)
.-..-.++|++.... .++ ..+++||-|.|-||+-+. +.+..+| +++-. +-|+-| =|.-. -.-..|..++.
T Consensus 290 n~~nA~DaVvQfAI~-~Lgf~~edIilygWSIGGF~~~----waAs~YP-dVkav-vLDAtF-DDllp-LAl~rMP~~~~ 360 (517)
T KOG1553|consen 290 NTLNAADAVVQFAIQ-VLGFRQEDIILYGWSIGGFPVA----WAASNYP-DVKAV-VLDATF-DDLLP-LALFRMPTFFS 360 (517)
T ss_pred cchHHHHHHHHHHHH-HcCCCccceEEEEeecCCchHH----HHhhcCC-CceEE-Eeecch-hhhhh-HHhhhchHHHH
Confidence 334567888888775 343 457899999999997664 5677788 44332 235542 22211 12234566776
Q ss_pred HHHH
Q 024663 224 QVVA 227 (264)
Q Consensus 224 ~~~~ 227 (264)
.+|+
T Consensus 361 giV~ 364 (517)
T KOG1553|consen 361 GIVE 364 (517)
T ss_pred HHHH
Confidence 6665
No 161
>PF02450 LCAT: Lecithin:cholesterol acyltransferase; InterPro: IPR003386 Lecithin:cholesterol acyltransferase (LACT), also known as phosphatidylcholine-sterol acyltransferase (2.3.1.43 from EC), is involved in extracellular metabolism of plasma lipoproteins, including cholesterol. It esterifies the free cholesterol transported in plasma lipoproteins, and is activated by apolipoprotein A-I. Defects in LACT cause Norum and Fish eye diseases. This family also includes phospholipid:diacylglycerol acyltransferase (PDAT)(2.3.1.158 from EC), which is involved in triacylglycerol formation by an acyl-CoA independent pathway. The enzyme specifically transfers acyl groups from the sn-2 position of a phospholipid to diacylglycerol, thus forming an sn-1-lysophospholipid [].; GO: 0008374 O-acyltransferase activity, 0006629 lipid metabolic process
Probab=28.17 E-value=85 Score=30.28 Aligned_cols=37 Identities=24% Similarity=0.358 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHhCCCccCeEEEEeeChhhHHHHHhhHHH
Q 024663 148 RVFQAVMEDLMAKGMKNAQNAVLSGCSAGGLTSILHCDNF 187 (264)
Q Consensus 148 ~n~~avl~~L~~~gl~~a~~VllsG~SAGGlga~~~~d~v 187 (264)
..+++.++.+.++ +.++|+|.|+|.||+=+.......
T Consensus 104 ~~lk~~ie~~~~~---~~~kv~li~HSmGgl~~~~fl~~~ 140 (389)
T PF02450_consen 104 TKLKQLIEEAYKK---NGKKVVLIAHSMGGLVARYFLQWM 140 (389)
T ss_pred HHHHHHHHHHHHh---cCCcEEEEEeCCCchHHHHHHHhc
Confidence 3456666666542 378999999999998776655554
No 162
>COG3208 GrsT Predicted thioesterase involved in non-ribosomal peptide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=27.94 E-value=4.2e+02 Score=24.52 Aligned_cols=85 Identities=11% Similarity=0.013 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHhCC--CccCeEEEEeeChhhHHHHHhhHHHHhhCCCCceEEEeecccccccc-CCCCCchhHHHHHHH
Q 024663 148 RVFQAVMEDLMAKGM--KNAQNAVLSGCSAGGLTSILHCDNFRALFPVGTKVKCFADAGYFINA-KDVSGASHIEQFYAQ 224 (264)
Q Consensus 148 ~n~~avl~~L~~~gl--~~a~~VllsG~SAGGlga~~~~d~v~~~lp~~a~v~~l~DSG~fld~-~~~~g~~~~~~~~~~ 224 (264)
..+++..|.|...-. ..-+-..|.|+|.||.=|+--+..+++.--.-..+.+..-...-.+. +.+.-. .-.+|.+.
T Consensus 54 ~di~~Lad~la~el~~~~~d~P~alfGHSmGa~lAfEvArrl~~~g~~p~~lfisg~~aP~~~~~~~i~~~-~D~~~l~~ 132 (244)
T COG3208 54 TDIESLADELANELLPPLLDAPFALFGHSMGAMLAFEVARRLERAGLPPRALFISGCRAPHYDRGKQIHHL-DDADFLAD 132 (244)
T ss_pred ccHHHHHHHHHHHhccccCCCCeeecccchhHHHHHHHHHHHHHcCCCcceEEEecCCCCCCcccCCccCC-CHHHHHHH
Confidence 357777777775322 22345899999999998888888887753212234444333341111 222211 22678899
Q ss_pred HHHhccccC
Q 024663 225 VVATHVHTL 233 (264)
Q Consensus 225 ~~~~~~~~~ 233 (264)
++++.|+..
T Consensus 133 l~~lgG~p~ 141 (244)
T COG3208 133 LVDLGGTPP 141 (244)
T ss_pred HHHhCCCCh
Confidence 999888653
No 163
>PRK04123 ribulokinase; Provisional
Probab=27.81 E-value=1.4e+02 Score=29.91 Aligned_cols=78 Identities=10% Similarity=0.233 Sum_probs=46.0
Q ss_pred eeEEEecCCCCccCCCcccc-c-------CCCceeEehHHHHHHHHHHHH-----------HhCCCccCeEEEEeeChhh
Q 024663 117 NRIKVRYCDGASFTGDVEAV-N-------PANNLHFRGARVFQAVMEDLM-----------AKGMKNAQNAVLSGCSAGG 177 (264)
Q Consensus 117 N~V~vpYCdGd~~~Gd~~~~-~-------~~~~l~frG~~n~~avl~~L~-----------~~gl~~a~~VllsG~SAGG 177 (264)
..+|+||=+ |.+... + -|.++.|.=..+++|+++-+. +.+. ..++|+++| ||
T Consensus 378 gl~f~P~l~-----Ger~P~~~~~arg~~~Gl~~~~~~~~l~RAvlEgia~~~~~~~e~l~~~g~-~~~~i~~~G---Gg 448 (548)
T PRK04123 378 GLVALDWFN-----GRRTPLADQRLKGVITGLTLGTDAPDIYRALIEATAFGTRAIMECFEDQGV-PVEEVIAAG---GI 448 (548)
T ss_pred ceEEccccc-----CCCCCCCCCCCceEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CcceEEEeC---CC
Confidence 358999844 443321 1 234555655667888866332 2122 467888888 55
Q ss_pred -HHHHHhhHHHHhhCCCCceEEEeecc
Q 024663 178 -LTSILHCDNFRALFPVGTKVKCFADA 203 (264)
Q Consensus 178 -lga~~~~d~v~~~lp~~a~v~~l~DS 203 (264)
--.-+|.+-+++.+...+.+..-.++
T Consensus 449 ~s~s~~w~Qi~ADv~g~pV~~~~~~e~ 475 (548)
T PRK04123 449 ARKNPVLMQIYADVLNRPIQVVASDQC 475 (548)
T ss_pred cccCHHHHHHHHHhcCCceEecCcccc
Confidence 45778899999999654433333343
No 164
>CHL00024 psbI photosystem II protein I
Probab=27.73 E-value=34 Score=22.46 Aligned_cols=12 Identities=50% Similarity=0.634 Sum_probs=11.0
Q ss_pred ccccCCCCCCCC
Q 024663 100 SGMLSNKQKFNP 111 (264)
Q Consensus 100 ~Gils~~~~~NP 111 (264)
-|.+|+|+..||
T Consensus 21 fGFlsnDp~RnP 32 (36)
T CHL00024 21 FGFLSNDPGRNP 32 (36)
T ss_pred ccccCCCCCCCC
Confidence 488999999999
No 165
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=27.72 E-value=2.5e+02 Score=22.29 Aligned_cols=93 Identities=15% Similarity=0.172 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHhCCCccCeEEEEeeC--hhhHHHHHhhHHHHhhCCCCceEEEeeccccccccCCCCCchhHHHHHHHHH
Q 024663 149 VFQAVMEDLMAKGMKNAQNAVLSGCS--AGGLTSILHCDNFRALFPVGTKVKCFADAGYFINAKDVSGASHIEQFYAQVV 226 (264)
Q Consensus 149 n~~avl~~L~~~gl~~a~~VllsG~S--AGGlga~~~~d~v~~~lp~~a~v~~l~DSG~fld~~~~~g~~~~~~~~~~~~ 226 (264)
+-+++...|.+ ..+.+|++.+-+ ..+.... .+.+++. ..++..+. -|++-....+..++.+.
T Consensus 12 iG~~~a~~l~~---~g~~~v~~~~r~~~~~~~~~l--~~~l~~~---~~~~~~~~--------~D~~~~~~~~~~~~~~~ 75 (167)
T PF00106_consen 12 IGRALARALAR---RGARVVILTSRSEDSEGAQEL--IQELKAP---GAKITFIE--------CDLSDPESIRALIEEVI 75 (167)
T ss_dssp HHHHHHHHHHH---TTTEEEEEEESSCHHHHHHHH--HHHHHHT---TSEEEEEE--------SETTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh---cCceEEEEeeecccccccccc--ccccccc---cccccccc--------ccccccccccccccccc
Confidence 44566666665 246677888877 4443333 2222221 22333332 12333345677788777
Q ss_pred HhccccCCch--------hhccCCCchhHHHhHHHHHHh
Q 024663 227 ATHVHTLFLT--------LCHAYTDKLMFLTFLLMCVVK 257 (264)
Q Consensus 227 ~~~~~~~~lp--------~C~~~~~p~~~~~~~~~~~~~ 257 (264)
+..+.-+.+- .-...++++.|...|-.++.-
T Consensus 76 ~~~~~ld~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~ 114 (167)
T PF00106_consen 76 KRFGPLDILINNAGIFSDGSLDDLSEEELERVFRVNLFG 114 (167)
T ss_dssp HHHSSESEEEEECSCTTSBSGGGSHHHHHHHHHHHHTHH
T ss_pred cccccccccccccccccccccccccchhhhhccccccce
Confidence 5433322221 233334555566666655443
No 166
>PLN02385 hydrolase; alpha/beta fold family protein
Probab=27.69 E-value=1.1e+02 Score=28.37 Aligned_cols=18 Identities=28% Similarity=0.324 Sum_probs=14.6
Q ss_pred CeEEEEeeChhhHHHHHh
Q 024663 166 QNAVLSGCSAGGLTSILH 183 (264)
Q Consensus 166 ~~VllsG~SAGGlga~~~ 183 (264)
.+++|.|.|.||.-++..
T Consensus 162 ~~~~LvGhSmGG~val~~ 179 (349)
T PLN02385 162 LPSFLFGQSMGGAVALKV 179 (349)
T ss_pred CCEEEEEeccchHHHHHH
Confidence 469999999999776543
No 167
>PRK02655 psbI photosystem II reaction center I protein I; Provisional
Probab=27.55 E-value=34 Score=22.65 Aligned_cols=12 Identities=42% Similarity=0.587 Sum_probs=11.0
Q ss_pred ccccCCCCCCCC
Q 024663 100 SGMLSNKQKFNP 111 (264)
Q Consensus 100 ~Gils~~~~~NP 111 (264)
-|.+|+|+..||
T Consensus 21 FGflsnDP~RnP 32 (38)
T PRK02655 21 FGFLSSDPTRNP 32 (38)
T ss_pred cccCCCCCCCCC
Confidence 488999999999
No 168
>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]
Probab=27.52 E-value=1.1e+02 Score=29.76 Aligned_cols=28 Identities=25% Similarity=0.401 Sum_probs=22.5
Q ss_pred ccCeEEEEeeChhhHHHHHhhHHHHhhCCCC
Q 024663 164 NAQNAVLSGCSAGGLTSILHCDNFRALFPVG 194 (264)
Q Consensus 164 ~a~~VllsG~SAGGlga~~~~d~v~~~lp~~ 194 (264)
.+.++++.|.|+||-.|+. .|...||.+
T Consensus 155 ~~~~iV~IGaStGGp~AL~---~il~~lP~~ 182 (350)
T COG2201 155 AARKIVAIGASTGGPAALR---AVLPALPAD 182 (350)
T ss_pred CCccEEEEEeCCCCHHHHH---HHHHhCCCC
Confidence 5678999999999999875 566777754
No 169
>PF08538 DUF1749: Protein of unknown function (DUF1749); InterPro: IPR013744 This is a plant and fungal family of unknown function. This family contains many hypothetical proteins. ; PDB: 2Q0X_B.
Probab=27.48 E-value=1.1e+02 Score=29.20 Aligned_cols=66 Identities=21% Similarity=0.290 Sum_probs=37.4
Q ss_pred CceeEEEecCCCCccCCCcccccCCCceeEehHHHHHHHHHHHHHh--CCCccCeEEEEeeChhhHHHHHhhHHHH
Q 024663 115 NWNRIKVRYCDGASFTGDVEAVNPANNLHFRGARVFQAVMEDLMAK--GMKNAQNAVLSGCSAGGLTSILHCDNFR 188 (264)
Q Consensus 115 nwN~V~vpYCdGd~~~Gd~~~~~~~~~l~frG~~n~~avl~~L~~~--gl~~a~~VllsG~SAGGlga~~~~d~v~ 188 (264)
+|..|.+.-.+ +|.|-... .| =|=.+-+.+.+++|... |..+.++|+|.|+|-|..-++.......
T Consensus 63 ~wsl~q~~LsS--Sy~G~G~~-----SL-~~D~~eI~~~v~ylr~~~~g~~~~~kIVLmGHSTGcQdvl~Yl~~~~ 130 (303)
T PF08538_consen 63 GWSLFQVQLSS--SYSGWGTS-----SL-DRDVEEIAQLVEYLRSEKGGHFGREKIVLMGHSTGCQDVLHYLSSPN 130 (303)
T ss_dssp T-EEEEE--GG--GBTTS-S-------H-HHHHHHHHHHHHHHHHHS------S-EEEEEECCHHHHHHHHHHH-T
T ss_pred CeEEEEEEecC--ccCCcCcc-----hh-hhHHHHHHHHHHHHHHhhccccCCccEEEEecCCCcHHHHHHHhccC
Confidence 79999988665 34442211 00 01134578889999974 3447899999999999988887655544
No 170
>PRK08775 homoserine O-acetyltransferase; Provisional
Probab=27.23 E-value=1.2e+02 Score=27.93 Aligned_cols=34 Identities=15% Similarity=0.234 Sum_probs=21.5
Q ss_pred eEEEEeeChhhHHHHHhhHHHHhhCCCCceEEEeeccc
Q 024663 167 NAVLSGCSAGGLTSILHCDNFRALFPVGTKVKCFADAG 204 (264)
Q Consensus 167 ~VllsG~SAGGlga~~~~d~v~~~lp~~a~v~~l~DSG 204 (264)
.++|.|+|.||.=++..+- +.|..++-.++.+++
T Consensus 139 ~~~lvG~SmGG~vA~~~A~----~~P~~V~~LvLi~s~ 172 (343)
T PRK08775 139 LHAFVGYSYGALVGLQFAS----RHPARVRTLVVVSGA 172 (343)
T ss_pred ceEEEEECHHHHHHHHHHH----HChHhhheEEEECcc
Confidence 3579999999976655443 345444445555654
No 171
>PF02129 Peptidase_S15: X-Pro dipeptidyl-peptidase (S15 family); InterPro: IPR000383 This entry represents a domain found peptidases Xaa-Pro dipeptidyl-peptidase and glutaryl-7-aminocephalosporanic-acid acylase, which belong to MEROPS peptidase families S15 and S45 respectively []. It is also found in hydrolases from the CocE/NonD family. Cocaine esterase (CocE) hydrolyzes cocaine endowing the bacteria with the ability to utilise cocaine as a sole source of carbon and energy []. ; GO: 0004177 aminopeptidase activity, 0006508 proteolysis; PDB: 1LNS_A 3PUI_A 3PUH_B 1JU3_A 3I2I_A 3I2G_A 1JU4_A 3I2K_A 3IDA_A 3I2H_A ....
Probab=27.05 E-value=87 Score=28.02 Aligned_cols=37 Identities=19% Similarity=0.118 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHhCCCccCeEEEEeeChhhHHHHHhhH
Q 024663 148 RVFQAVMEDLMAKGMKNAQNAVLSGCSAGGLTSILHCD 185 (264)
Q Consensus 148 ~n~~avl~~L~~~gl~~a~~VllsG~SAGGlga~~~~d 185 (264)
+-..++|+||..+-.. ..+|-+.|+|.+|..+++-+.
T Consensus 84 ~D~~d~I~W~~~Qpws-~G~VGm~G~SY~G~~q~~~A~ 120 (272)
T PF02129_consen 84 QDGYDTIEWIAAQPWS-NGKVGMYGISYGGFTQWAAAA 120 (272)
T ss_dssp HHHHHHHHHHHHCTTE-EEEEEEEEETHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCC-CCeEEeeccCHHHHHHHHHHh
Confidence 3467889999975222 358999999999988776443
No 172
>PHA02857 monoglyceride lipase; Provisional
Probab=26.96 E-value=1.2e+02 Score=26.56 Aligned_cols=34 Identities=21% Similarity=0.159 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhCCCccCeEEEEeeChhhHHHHHhhH
Q 024663 150 FQAVMEDLMAKGMKNAQNAVLSGCSAGGLTSILHCD 185 (264)
Q Consensus 150 ~~avl~~L~~~gl~~a~~VllsG~SAGGlga~~~~d 185 (264)
+...++.+.+ ..+ .+.++|.|.|.||.=++..+.
T Consensus 83 ~~~~l~~~~~-~~~-~~~~~lvG~S~GG~ia~~~a~ 116 (276)
T PHA02857 83 VVQHVVTIKS-TYP-GVPVFLLGHSMGATISILAAY 116 (276)
T ss_pred HHHHHHHHHh-hCC-CCCEEEEEcCchHHHHHHHHH
Confidence 3444444443 222 456999999999986665443
No 173
>PRK13690 hypothetical protein; Provisional
Probab=26.79 E-value=88 Score=27.70 Aligned_cols=28 Identities=18% Similarity=0.450 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHhCCCccCeEEEEeeCh
Q 024663 148 RVFQAVMEDLMAKGMKNAQNAVLSGCSA 175 (264)
Q Consensus 148 ~n~~avl~~L~~~gl~~a~~VllsG~SA 175 (264)
..++.++++|+++.--++.++++-|||-
T Consensus 8 ~~~~~~~~El~~~a~l~~g~i~VvGcST 35 (184)
T PRK13690 8 KQTRQILEELLEQANLKPGQIFVLGCST 35 (184)
T ss_pred HHHHHHHHHHHHhhCCCCCCEEEEecch
Confidence 4578889999876555677899999984
No 174
>PF04631 Baculo_44: Baculovirus hypothetical protein; InterPro: IPR006725 This family includes several hypothetical baculoviral proteins, with predicted molecular weights of approximately 44 kDa.
Probab=26.79 E-value=41 Score=32.73 Aligned_cols=38 Identities=18% Similarity=0.573 Sum_probs=29.5
Q ss_pred CccccCCCCCeEEEecCCCCCCccEEE---EeeccccccCc---hhhhc
Q 024663 39 GAVCLDGSPPAYHFDKGFGAGINNWLV---HIEGGGWCNNV---TTCLE 81 (264)
Q Consensus 39 gA~ClDGSp~~y~~~~g~g~~s~k~lI---~leGGG~C~d~---~tC~~ 81 (264)
.++|.|.|...||+.+. +|++| .|.-||||... ..|..
T Consensus 94 t~iC~n~sA~yf~V~~~-----dkfvvng~~L~~GgYCttnsvPrnCNr 137 (371)
T PF04631_consen 94 TSICDNPSAVYFFVGEH-----DKFVVNGQRLSPGGYCTTNSVPRNCNR 137 (371)
T ss_pred hhhcCCCcceEEEecCC-----ceEEEcCcCccCCccccCCCcccccCc
Confidence 45899999988888775 67777 48899999753 36773
No 175
>PLN02652 hydrolase; alpha/beta fold family protein
Probab=26.68 E-value=1.1e+02 Score=29.75 Aligned_cols=34 Identities=21% Similarity=0.257 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHhCCCccCeEEEEeeChhhHHHHHhh
Q 024663 149 VFQAVMEDLMAKGMKNAQNAVLSGCSAGGLTSILHC 184 (264)
Q Consensus 149 n~~avl~~L~~~gl~~a~~VllsG~SAGGlga~~~~ 184 (264)
.+.++++.+..+ .+ ..+++|.|+|.||+-+...+
T Consensus 193 Dl~~~l~~l~~~-~~-~~~i~lvGhSmGG~ial~~a 226 (395)
T PLN02652 193 DTEAFLEKIRSE-NP-GVPCFLFGHSTGGAVVLKAA 226 (395)
T ss_pred HHHHHHHHHHHh-CC-CCCEEEEEECHHHHHHHHHH
Confidence 456667776642 22 23699999999999887544
No 176
>PF11187 DUF2974: Protein of unknown function (DUF2974); InterPro: IPR024499 This family of proteins has no known function.
Probab=26.54 E-value=1.7e+02 Score=26.19 Aligned_cols=34 Identities=18% Similarity=0.224 Sum_probs=20.5
Q ss_pred HHHHHHHHHHhCCCccCeEEEEeeChhhHHHHHhhHH
Q 024663 150 FQAVMEDLMAKGMKNAQNAVLSGCSAGGLTSILHCDN 186 (264)
Q Consensus 150 ~~avl~~L~~~gl~~a~~VllsG~SAGGlga~~~~d~ 186 (264)
..+-++.+++ ..+. ++.|+|+|=||.=|.+-+-.
T Consensus 71 A~~yl~~~~~-~~~~--~i~v~GHSkGGnLA~yaa~~ 104 (224)
T PF11187_consen 71 ALAYLKKIAK-KYPG--KIYVTGHSKGGNLAQYAAAN 104 (224)
T ss_pred HHHHHHHHHH-hCCC--CEEEEEechhhHHHHHHHHH
Confidence 3344444443 2333 59999999999655444444
No 177
>COG0596 MhpC Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=26.07 E-value=1.8e+02 Score=23.18 Aligned_cols=21 Identities=29% Similarity=0.349 Sum_probs=15.4
Q ss_pred EEEEeeChhhHHHHHhhHHHH
Q 024663 168 AVLSGCSAGGLTSILHCDNFR 188 (264)
Q Consensus 168 VllsG~SAGGlga~~~~d~v~ 188 (264)
++|.|+|.||.-+...+....
T Consensus 90 ~~l~G~S~Gg~~~~~~~~~~p 110 (282)
T COG0596 90 VVLVGHSMGGAVALALALRHP 110 (282)
T ss_pred eEEEEecccHHHHHHHHHhcc
Confidence 999999999866665544433
No 178
>PRK06179 short chain dehydrogenase; Provisional
Probab=25.75 E-value=4.4e+02 Score=22.86 Aligned_cols=62 Identities=23% Similarity=0.252 Sum_probs=32.2
Q ss_pred ccCeEEEEeeChhhHHHHHhhHHHHhhCCCCceEEEeecc--------ccccccCCCCCchhHHHHHHHHHHhcc
Q 024663 164 NAQNAVLSGCSAGGLTSILHCDNFRALFPVGTKVKCFADA--------GYFINAKDVSGASHIEQFYAQVVATHV 230 (264)
Q Consensus 164 ~a~~VllsG~SAGGlga~~~~d~v~~~lp~~a~v~~l~DS--------G~fld~~~~~g~~~~~~~~~~~~~~~~ 230 (264)
+.+.|+|+|+| ||+|.-+-....++ ..+|.++.-. +.-+-.-|+.-...++..++.+.+.++
T Consensus 3 ~~~~vlVtGas-g~iG~~~a~~l~~~----g~~V~~~~r~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~g 72 (270)
T PRK06179 3 NSKVALVTGAS-SGIGRATAEKLARA----GYRVFGTSRNPARAAPIPGVELLELDVTDDASVQAAVDEVIARAG 72 (270)
T ss_pred CCCEEEEecCC-CHHHHHHHHHHHHC----CCEEEEEeCChhhccccCCCeeEEeecCCHHHHHHHHHHHHHhCC
Confidence 34579999976 88887654433322 4455554421 111111233333455666776665444
No 179
>cd06377 PBP1_iGluR_NMDA_NR3 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR3 subunit of NMDA receptor family. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR3 subunit of NMDA receptor family. The ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer composed of two NR1 and two NR2 (A, B, C, and D) or of NR3 (A and B) subunits. The receptor controls a cation channel that is highly permeable to monovalent ions and calcium and exhibits voltage-dependent inhibition by magnesium. Dual agonists, glutamate and glycine, are required for efficient activation of the NMDA receptor. Among NMDA receptor subtypes, the NR2B subunit containing receptors appear particularly important for pain perception; thus NR2B-selective antagonists may be useful in
Probab=25.73 E-value=1.1e+02 Score=30.00 Aligned_cols=63 Identities=19% Similarity=0.264 Sum_probs=39.6
Q ss_pred CccCceeEEEecCCCCccCCCcccc--c--C--CCceeE--------ehHHHHHHHHHHHHHhCCCccCeEEEEeeChhh
Q 024663 112 DFYNWNRIKVRYCDGASFTGDVEAV--N--P--ANNLHF--------RGARVFQAVMEDLMAKGMKNAQNAVLSGCSAGG 177 (264)
Q Consensus 112 ~F~nwN~V~vpYCdGd~~~Gd~~~~--~--~--~~~l~f--------rG~~n~~avl~~L~~~gl~~a~~VllsG~SAGG 177 (264)
..++|+++.+=||+..-+..=.... . . ...+.. -+...++.+|+++.. +.+++++|-+||.=.
T Consensus 147 ~~~~W~~f~~iy~~~~gl~~lq~l~~~~~~~~~~~~i~v~~~~~~~~d~~~~~~~~L~~i~~---~~~~~~ill~cs~e~ 223 (382)
T cd06377 147 QRNGWEDVSLVLCRERDPTGLLLLWTNHARFHLGSVLNLSRNDPSTADLLDFLRAQLELLKD---PPGPAVVLFGCDVAR 223 (382)
T ss_pred HHCCCcEEEEEEecCcCHHHHHHHHHHhcccccCceEEEEeccCccCChhHHHHHHHHHhhc---ccCceEEEEECCHHH
Confidence 3679999999999998665421110 0 1 134444 234455888888764 443678888887543
No 180
>TIGR03607 patatin-related protein. This bacterial protein family contains an N-terminal patatin domain, where patatins are plant storage proteins capable of phospholipase activity (see pfam01734). Regions of strong sequence conservation are separated by regions of significant sequence and length variability. Members of the family are distributed sporadically among bacteria. The function is unknown.
Probab=25.61 E-value=1.6e+02 Score=31.47 Aligned_cols=29 Identities=41% Similarity=0.639 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHhCCC-ccCeEEEEeeChhhH
Q 024663 149 VFQAVMEDLMAKGMK-NAQNAVLSGCSAGGL 178 (264)
Q Consensus 149 n~~avl~~L~~~gl~-~a~~VllsG~SAGGl 178 (264)
.+.++++.|-. .+. ...-=+++|+||||+
T Consensus 49 ~Y~~l~~~l~~-~~~~~~~~d~iaGTSAGAI 78 (739)
T TIGR03607 49 VYGALLELLGA-HLRLRVRVDVISGTSAGGI 78 (739)
T ss_pred HHHHHHHHhhh-hhccCCCCceEEeeCHHHH
Confidence 45555555542 122 222338999999999
No 181
>TIGR01440 conserved hypothetical protein TIGR01440. Members of this family are uncharacterized proteins of about 180 amino acids from the Bacillus/Clostridium group of Gram-positive bacteria, found in no more than one copy per genome.
Probab=25.39 E-value=76 Score=27.81 Aligned_cols=27 Identities=22% Similarity=0.409 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHhCCCccCeEEEEeeCh
Q 024663 149 VFQAVMEDLMAKGMKNAQNAVLSGCSA 175 (264)
Q Consensus 149 n~~avl~~L~~~gl~~a~~VllsG~SA 175 (264)
.++.++++|+++..-++.++++-|||-
T Consensus 2 ~~~~~~~El~~~a~l~~g~i~VvGcST 28 (172)
T TIGR01440 2 QLTTVLEELKDASNLKKGDLFVIGCST 28 (172)
T ss_pred hHHHHHHHHHHhhCCCCCCEEEEecch
Confidence 467888999976555677899999984
No 182
>PF10290 DUF2403: Glycine-rich protein domain (DUF2403); InterPro: IPR018807 This domain is found N-terminal to IPR018805 from INTERPRO. The function of this glycine-rich domain is unknown.
Probab=25.35 E-value=40 Score=24.94 Aligned_cols=23 Identities=35% Similarity=0.663 Sum_probs=16.0
Q ss_pred ccCCCcccccCCCceeEehHHHH
Q 024663 128 SFTGDVEAVNPANNLHFRGARVF 150 (264)
Q Consensus 128 ~~~Gd~~~~~~~~~l~frG~~n~ 150 (264)
.|+|....-+.+.++||||--++
T Consensus 34 ~fsG~laPl~EelSvhFRGPl~L 56 (65)
T PF10290_consen 34 SFSGPLAPLNEELSVHFRGPLNL 56 (65)
T ss_pred EeeCCCCCCCCcEEEEEeCCcEE
Confidence 45666555566789999997543
No 183
>COG1505 Serine proteases of the peptidase family S9A [Amino acid transport and metabolism]
Probab=25.06 E-value=34 Score=35.55 Aligned_cols=35 Identities=34% Similarity=0.490 Sum_probs=32.4
Q ss_pred EehHHHHHHHHHHHHHhCCCccCeEEEEeeChhhH
Q 024663 144 FRGARVFQAVMEDLMAKGMKNAQNAVLSGCSAGGL 178 (264)
Q Consensus 144 frG~~n~~avl~~L~~~gl~~a~~VllsG~SAGGl 178 (264)
++..+-+.||.++|.++|...|+++=+-|.|=|||
T Consensus 478 q~vfdDf~AVaedLi~rgitspe~lgi~GgSNGGL 512 (648)
T COG1505 478 QNVFDDFIAVAEDLIKRGITSPEKLGIQGGSNGGL 512 (648)
T ss_pred hhhhHHHHHHHHHHHHhCCCCHHHhhhccCCCCce
Confidence 56678899999999999999999999999999996
No 184
>PF11288 DUF3089: Protein of unknown function (DUF3089); InterPro: IPR021440 This family of proteins has no known function.
Probab=23.92 E-value=1.2e+02 Score=27.28 Aligned_cols=36 Identities=19% Similarity=0.308 Sum_probs=26.7
Q ss_pred ehHHHHHHHHHHHHHhCCCccCeEEEEeeChhhHHHH
Q 024663 145 RGARVFQAVMEDLMAKGMKNAQNAVLSGCSAGGLTSI 181 (264)
Q Consensus 145 rG~~n~~avl~~L~~~gl~~a~~VllsG~SAGGlga~ 181 (264)
-++.-+++.+++-++ +..+-.-+||+|+|=|+.-..
T Consensus 75 ~ay~DV~~AF~~yL~-~~n~GRPfILaGHSQGs~~l~ 110 (207)
T PF11288_consen 75 LAYSDVRAAFDYYLA-NYNNGRPFILAGHSQGSMHLL 110 (207)
T ss_pred hhHHHHHHHHHHHHH-hcCCCCCEEEEEeChHHHHHH
Confidence 356667777777775 566667899999999985443
No 185
>cd07219 Pat_PNPLA1 Patatin-like phospholipase domain containing protein 1. Members of this family share a patatin domain, initially discovered in potato tubers. Some members of PNPLA1 subfamily do not have the lipase consensus sequence Gly-X-Ser-X-Gly which is essential for hydrolase activity. This family includes PNPLA1 from Homo sapiens and Gallus gallus. Currently, there is no literature available on the physiological role, structure, or enzymatic activity of PNPLA1. It is expressed in various human tissues in low mRNA levels.
Probab=23.62 E-value=92 Score=30.58 Aligned_cols=31 Identities=19% Similarity=0.242 Sum_probs=19.1
Q ss_pred HHHHHHhCCCcc-CeEEEEeeChhhHHHHHhh
Q 024663 154 MEDLMAKGMKNA-QNAVLSGCSAGGLTSILHC 184 (264)
Q Consensus 154 l~~L~~~gl~~a-~~VllsG~SAGGlga~~~~ 184 (264)
++.|.+++..-- .--.++|.|||++-+.+.+
T Consensus 31 l~aL~E~gp~ll~~~d~IaGtSAGALvAAl~a 62 (382)
T cd07219 31 VDALRDLAPRMLETAHRVAGTSAGSVIAALVV 62 (382)
T ss_pred HHHHHhcCCcccccCCeEEEEcHHHHHHHHHH
Confidence 566665332111 1235899999999887664
No 186
>COG1075 LipA Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]
Probab=23.52 E-value=1.6e+02 Score=27.86 Aligned_cols=26 Identities=31% Similarity=0.428 Sum_probs=20.4
Q ss_pred CccCeEEEEeeChhhHHHHHhhHHHHhhCC
Q 024663 163 KNAQNAVLSGCSAGGLTSILHCDNFRALFP 192 (264)
Q Consensus 163 ~~a~~VllsG~SAGGlga~~~~d~v~~~lp 192 (264)
..+++|.|.|+|+||.-+. ++.+.++
T Consensus 124 ~ga~~v~LigHS~GG~~~r----y~~~~~~ 149 (336)
T COG1075 124 TGAKKVNLIGHSMGGLDSR----YYLGVLG 149 (336)
T ss_pred cCCCceEEEeecccchhhH----HHHhhcC
Confidence 5669999999999998888 4444454
No 187
>COG3007 Uncharacterized paraquat-inducible protein B [Function unknown]
Probab=23.43 E-value=2.5e+02 Score=27.17 Aligned_cols=67 Identities=21% Similarity=0.393 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHhC-CC-ccCeEEEEeeChh-hHHHHHhhHHHHhhCCCCceEEEeeccccccccCCCCCchhHHHHHH
Q 024663 147 ARVFQAVMEDLMAKG-MK-NAQNAVLSGCSAG-GLTSILHCDNFRALFPVGTKVKCFADAGYFINAKDVSGASHIEQFYA 223 (264)
Q Consensus 147 ~~n~~avl~~L~~~g-l~-~a~~VllsG~SAG-Glga~~~~d~v~~~lp~~a~v~~l~DSG~fld~~~~~g~~~~~~~~~ 223 (264)
.+|+..-+++.+.+| +. .|++|++.|.|-| |+++ ++...|...+.- =|.|+..+...........|+
T Consensus 21 e~nV~~QI~y~k~~gp~~ngPKkVLviGaSsGyGLa~-----RIsaaFG~gAdT-----iGVffE~pgte~~~gtagwyn 90 (398)
T COG3007 21 EANVLQQIDYVKAAGPIKNGPKKVLVIGASSGYGLAA-----RISAAFGPGADT-----IGVFFERPGTERKPGTAGWYN 90 (398)
T ss_pred HHHHHHHHHHHHhcCCccCCCceEEEEecCCcccHHH-----HHHHHhCCCCce-----eeEEeecCCccCCCcchhhhH
Confidence 568888899988754 44 6899999999988 5544 455566544321 267777776655543333333
No 188
>PLN02511 hydrolase
Probab=23.38 E-value=1.2e+02 Score=29.08 Aligned_cols=34 Identities=15% Similarity=0.147 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHhCCCccCeEEEEeeChhhHHHHHhh
Q 024663 149 VFQAVMEDLMAKGMKNAQNAVLSGCSAGGLTSILHC 184 (264)
Q Consensus 149 n~~avl~~L~~~gl~~a~~VllsG~SAGGlga~~~~ 184 (264)
-+++++++|.. .+++ .++++.|.|.||.=+...+
T Consensus 158 Dl~~~i~~l~~-~~~~-~~~~lvG~SlGg~i~~~yl 191 (388)
T PLN02511 158 DLRQVVDHVAG-RYPS-ANLYAAGWSLGANILVNYL 191 (388)
T ss_pred HHHHHHHHHHH-HCCC-CCEEEEEechhHHHHHHHH
Confidence 57888999886 3443 4799999999997665544
No 189
>smart00704 ZnF_CDGSH CDGSH-type zinc finger. Function unknown.
Probab=23.18 E-value=33 Score=22.59 Aligned_cols=6 Identities=67% Similarity=1.708 Sum_probs=5.1
Q ss_pred ecCCCC
Q 024663 122 RYCDGA 127 (264)
Q Consensus 122 pYCdGd 127 (264)
|||||.
T Consensus 26 PfCDGs 31 (38)
T smart00704 26 PYCDGS 31 (38)
T ss_pred CccCCc
Confidence 899985
No 190
>PRK00175 metX homoserine O-acetyltransferase; Provisional
Probab=23.14 E-value=2e+02 Score=27.25 Aligned_cols=37 Identities=16% Similarity=0.259 Sum_probs=23.2
Q ss_pred Ce-EEEEeeChhhHHHHHhhHHHHhhCCCCceEEEeeccccc
Q 024663 166 QN-AVLSGCSAGGLTSILHCDNFRALFPVGTKVKCFADAGYF 206 (264)
Q Consensus 166 ~~-VllsG~SAGGlga~~~~d~v~~~lp~~a~v~~l~DSG~f 206 (264)
++ ++|.|.|.||.=++..+.. .|..++-.++.|++..
T Consensus 146 ~~~~~lvG~S~Gg~ia~~~a~~----~p~~v~~lvl~~~~~~ 183 (379)
T PRK00175 146 TRLAAVVGGSMGGMQALEWAID----YPDRVRSALVIASSAR 183 (379)
T ss_pred CCceEEEEECHHHHHHHHHHHh----ChHhhhEEEEECCCcc
Confidence 45 5899999999766665544 4444444445565543
No 191
>COG4947 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.90 E-value=52 Score=29.47 Aligned_cols=35 Identities=29% Similarity=0.547 Sum_probs=20.0
Q ss_pred HHHHHHHHhCCCccCeEEEEeeChhhHHHHHhhHHHHhhCC
Q 024663 152 AVMEDLMAKGMKNAQNAVLSGCSAGGLTSILHCDNFRALFP 192 (264)
Q Consensus 152 avl~~L~~~gl~~a~~VllsG~SAGGlga~~~~d~v~~~lp 192 (264)
|--.++++.-++ -.-+++|||.||+ |+-.+-=+.|
T Consensus 89 AyerYv~eEalp--gs~~~sgcsmGay----hA~nfvfrhP 123 (227)
T COG4947 89 AYERYVIEEALP--GSTIVSGCSMGAY----HAANFVFRHP 123 (227)
T ss_pred HHHHHHHHhhcC--CCccccccchhhh----hhhhhheeCh
Confidence 333444443344 3478999999995 4444444444
No 192
>PRK05371 x-prolyl-dipeptidyl aminopeptidase; Provisional
Probab=22.76 E-value=1.4e+02 Score=31.71 Aligned_cols=36 Identities=17% Similarity=0.169 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHhCCC--c------------cCeEEEEeeChhhHHHHH
Q 024663 147 ARVFQAVMEDLMAKGMK--N------------AQNAVLSGCSAGGLTSIL 182 (264)
Q Consensus 147 ~~n~~avl~~L~~~gl~--~------------a~~VllsG~SAGGlga~~ 182 (264)
..-..++|+||..+... + ..+|-+.|.|.||.-++.
T Consensus 305 ~~D~~~vIeWl~~~~~~~~d~~~~~~~kq~WsnGkVGm~G~SY~G~~~~~ 354 (767)
T PRK05371 305 IESMKAVIDWLNGRATAYTDRTRGKEVKADWSNGKVAMTGKSYLGTLPNA 354 (767)
T ss_pred HHHHHHHHHHHhhCCccccccccccccccCCCCCeeEEEEEcHHHHHHHH
Confidence 35577899999953211 1 479999999999977664
No 193
>COG4099 Predicted peptidase [General function prediction only]
Probab=22.73 E-value=1.1e+02 Score=29.77 Aligned_cols=41 Identities=17% Similarity=0.239 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHhCCCccCeEEEEeeChhhHHHHHhhHHHHh
Q 024663 149 VFQAVMEDLMAKGMKNAQNAVLSGCSAGGLTSILHCDNFRA 189 (264)
Q Consensus 149 n~~avl~~L~~~gl~~a~~VllsG~SAGGlga~~~~d~v~~ 189 (264)
-++.+.+.|.+.---+-.++.++|-|-||+|++.-...+-+
T Consensus 252 ~idli~~vlas~ynID~sRIYviGlSrG~~gt~al~~kfPd 292 (387)
T COG4099 252 KIDLILEVLASTYNIDRSRIYVIGLSRGGFGTWALAEKFPD 292 (387)
T ss_pred HHHHHHHHHhhccCcccceEEEEeecCcchhhHHHHHhCch
Confidence 34555556665311245789999999999999986654333
No 194
>PRK15222 putative pilin structural protein SafD; Provisional
Probab=22.65 E-value=1.1e+02 Score=26.37 Aligned_cols=65 Identities=20% Similarity=0.326 Sum_probs=40.1
Q ss_pred CCCCCeEEEecCCCCCCccEEEEeeccccccCchhhhcccCCCCCCccccccccccccccCCCCCCCCCcc
Q 024663 44 DGSPPAYHFDKGFGAGINNWLVHIEGGGWCNNVTTCLERKKTRLGSSKQMVKVVAFSGMLSNKQKFNPDFY 114 (264)
Q Consensus 44 DGSp~~y~~~~g~g~~s~k~lI~leGGG~C~d~~tC~~r~~t~lGSs~~~~~~~~~~Gils~~~~~NP~F~ 114 (264)
+|-.|+.|+-.|.....+++-|=++|.||--|.. ..+.. .+..-+++..|.=+.+.++..+||-|
T Consensus 78 ~gg~p~~Yil~G~~ds~h~LrVRl~G~GW~pd~~--~g~Gi----v~~~~e~~~~FdVv~DGnQ~v~~d~Y 142 (156)
T PRK15222 78 AGNTPTVLLLSGQQDPRHHIQVRLEGEGWQPDTV--SGRGA----ILRTAADNASFSVVVDGNQEVPADTW 142 (156)
T ss_pred cCCCccEEEEECCCCCcceEEEEecCCCccCCCC--CCcee----EEecCCcceEEEEEEeCCEecCCCeE
Confidence 4555566666665556789999999999988875 22211 11222344455566667777777543
No 195
>PF10081 Abhydrolase_9: Alpha/beta-hydrolase family; InterPro: IPR012037 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=22.28 E-value=1.4e+02 Score=28.28 Aligned_cols=45 Identities=20% Similarity=0.203 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHHHHhCCCcc--CeEEEEeeChhhHHHHHhhHHHHhhCC
Q 024663 146 GARVFQAVMEDLMAKGMKNA--QNAVLSGCSAGGLTSILHCDNFRALFP 192 (264)
Q Consensus 146 G~~n~~avl~~L~~~gl~~a--~~VllsG~SAGGlga~~~~d~v~~~lp 192 (264)
|+.-+++|-+++. .++.. -+++|.|-|-|++|+-.-.+.+.++..
T Consensus 89 ~~aL~~aV~~~~~--~lP~~~RPkL~l~GeSLGa~g~~~af~~~~~~~~ 135 (289)
T PF10081_consen 89 ARALFEAVYARWS--TLPEDRRPKLYLYGESLGAYGGEAAFDGLDDLRD 135 (289)
T ss_pred HHHHHHHHHHHHH--hCCcccCCeEEEeccCccccchhhhhccHHHhhh
Confidence 3445566665555 45543 579999999999998877777776664
No 196
>PRK07581 hypothetical protein; Validated
Probab=22.28 E-value=1.6e+02 Score=26.99 Aligned_cols=22 Identities=18% Similarity=0.315 Sum_probs=16.7
Q ss_pred Ce-EEEEeeChhhHHHHHhhHHH
Q 024663 166 QN-AVLSGCSAGGLTSILHCDNF 187 (264)
Q Consensus 166 ~~-VllsG~SAGGlga~~~~d~v 187 (264)
++ ++|.|+|.||.=++..+..-
T Consensus 123 ~~~~~lvG~S~GG~va~~~a~~~ 145 (339)
T PRK07581 123 ERLALVVGWSMGAQQTYHWAVRY 145 (339)
T ss_pred CceEEEEEeCHHHHHHHHHHHHC
Confidence 45 68999999998887655543
No 197
>PF05448 AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR008391 This family consists of several bacterial acetyl xylan esterase proteins. Acetyl xylan esterases are enzymes that hydrolyse the ester linkages of the acetyl groups in position 2 and/or 3 of the xylose moieties of natural acetylated xylan from hardwood. These enzymes are one of the accessory enzymes which are part of the xylanolytic system, together with xylanases, beta-xylosidases, alpha-arabinofuranosidases and methylglucuronidases; these are all required for the complete hydrolysis of xylan [].; PDB: 1VLQ_H 3M81_E 3M82_D 3M83_C 3FCY_A 1ODS_F 1ODT_C 1L7A_A 3FYT_A 2XLB_F ....
Probab=22.22 E-value=79 Score=29.83 Aligned_cols=43 Identities=14% Similarity=0.203 Sum_probs=28.4
Q ss_pred CceeEehH-HHHHHHHHHHHHhCCC--ccCeEEEEeeChhhHHHHHhh
Q 024663 140 NNLHFRGA-RVFQAVMEDLMAKGMK--NAQNAVLSGCSAGGLTSILHC 184 (264)
Q Consensus 140 ~~l~frG~-~n~~avl~~L~~~gl~--~a~~VllsG~SAGGlga~~~~ 184 (264)
.+.|||+- ......++.|.+ ++ ++++|.++|.|=||.=|++-+
T Consensus 148 e~~yyr~~~~D~~ravd~l~s--lpevD~~rI~v~G~SqGG~lal~~a 193 (320)
T PF05448_consen 148 EDYYYRRVYLDAVRAVDFLRS--LPEVDGKRIGVTGGSQGGGLALAAA 193 (320)
T ss_dssp TT-HHHHHHHHHHHHHHHHHT--STTEEEEEEEEEEETHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh--CCCcCcceEEEEeecCchHHHHHHH
Confidence 46778774 333334666664 55 578999999999996665543
No 198
>PF10230 DUF2305: Uncharacterised conserved protein (DUF2305); InterPro: IPR019363 This entry contains proteins that have no known function.
Probab=21.62 E-value=1e+02 Score=28.11 Aligned_cols=17 Identities=24% Similarity=0.325 Sum_probs=13.7
Q ss_pred ccCeEEEEeeChhhHHH
Q 024663 164 NAQNAVLSGCSAGGLTS 180 (264)
Q Consensus 164 ~a~~VllsG~SAGGlga 180 (264)
.-.+++|.|+|-|++=+
T Consensus 82 ~~~~liLiGHSIGayi~ 98 (266)
T PF10230_consen 82 PNVKLILIGHSIGAYIA 98 (266)
T ss_pred CCCcEEEEeCcHHHHHH
Confidence 56789999999998433
No 199
>PF02532 PsbI: Photosystem II reaction centre I protein (PSII 4.8 kDa protein); InterPro: IPR003686 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbI, which is tightly associated with the D1/D2 heterodimer in PSII. The function of PsbI is unknown, but it may be involved in the assembly, dimerisation or stabilisation of PSII dimers [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_i 3ARC_I 3A0B_i 3BZ2_I 3PRQ_I 3KZI_I 3PRR_I 2AXT_i 4FBY_I 1S5L_i ....
Probab=21.45 E-value=41 Score=22.10 Aligned_cols=12 Identities=50% Similarity=0.634 Sum_probs=10.7
Q ss_pred ccccCCCCCCCC
Q 024663 100 SGMLSNKQKFNP 111 (264)
Q Consensus 100 ~Gils~~~~~NP 111 (264)
-|.+|+|+..||
T Consensus 21 fGflsnDp~RnP 32 (36)
T PF02532_consen 21 FGFLSNDPGRNP 32 (36)
T ss_dssp HHHHTTCTTSSS
T ss_pred ccccCCCCCCCC
Confidence 488999999999
No 200
>PF13173 AAA_14: AAA domain
Probab=21.25 E-value=1.1e+02 Score=24.15 Aligned_cols=30 Identities=20% Similarity=0.340 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHhCCCccCeEEEEeeChhhHH
Q 024663 148 RVFQAVMEDLMAKGMKNAQNAVLSGCSAGGLT 179 (264)
Q Consensus 148 ~n~~avl~~L~~~gl~~a~~VllsG~SAGGlg 179 (264)
.+|...++.+.+++ ..-++++||+|++.+.
T Consensus 74 ~~~~~~lk~l~d~~--~~~~ii~tgS~~~~l~ 103 (128)
T PF13173_consen 74 PDWEDALKFLVDNG--PNIKIILTGSSSSLLS 103 (128)
T ss_pred ccHHHHHHHHHHhc--cCceEEEEccchHHHh
Confidence 35777788877643 3458999999999863
No 201
>cd07212 Pat_PNPLA9 Patatin-like phospholipase domain containing protein 9. PNPLA9 is a Ca-independent phospholipase that catalyzes the hydrolysis of glycerophospholipids at the sn-2 position. PNPLA9 is also known as PLA2G6 (phospholipase A2 group VI) or iPLA2beta. PLA2G6 is stimulated by ATP and inhibited by bromoenol lactone (BEL). In humans, PNPLA9 in expressed ubiquitously and is involved in signal transduction, cell proliferation, and apoptotic cell death. Mutations in human PLA2G6 leads to infantile neuroaxonal dystrophy (INAD) and idiopathic neurodegeneration with brain iron accumulation (NBIA). This family includes PLA2G6 from Homo sapiens and Rattus norvegicus.
Probab=21.01 E-value=1.4e+02 Score=27.92 Aligned_cols=35 Identities=14% Similarity=0.219 Sum_probs=21.4
Q ss_pred HHHHHHHHHHh-CCCccCeE-EEEeeChhhHHHHHhh
Q 024663 150 FQAVMEDLMAK-GMKNAQNA-VLSGCSAGGLTSILHC 184 (264)
Q Consensus 150 ~~avl~~L~~~-gl~~a~~V-llsG~SAGGlga~~~~ 184 (264)
.-.+|+.|.++ |.+-.+.+ +++|.|+||+=|...+
T Consensus 14 ~i~vL~~le~~~g~~i~~~fD~i~GTStGgiIA~~la 50 (312)
T cd07212 14 LIQMLIAIEKALGRPIRELFDWIAGTSTGGILALALL 50 (312)
T ss_pred HHHHHHHHHHHhCCCchhhccEEEeeChHHHHHHHHH
Confidence 33456666653 43322333 8999999997666544
No 202
>TIGR01138 cysM cysteine synthase B. Alternate name: O-acetylserine (thiol)-lyase
Probab=20.82 E-value=1.7e+02 Score=26.92 Aligned_cols=36 Identities=19% Similarity=0.296 Sum_probs=26.0
Q ss_pred CeEEEEeeChhhHHHHHhhHHHHhhCCCCceEEEeeccc
Q 024663 166 QNAVLSGCSAGGLTSILHCDNFRALFPVGTKVKCFADAG 204 (264)
Q Consensus 166 ~~VllsG~SAGGlga~~~~d~v~~~lp~~a~v~~l~DSG 204 (264)
+.+++.++||..+++.++ +++.++.+.-|.+++|+|
T Consensus 246 ~gi~~g~ssga~laa~~~---~~~~~~~~~vv~v~~d~g 281 (290)
T TIGR01138 246 EGIFCGVSSGGAVAAALR---LARELPDAVVVAIICDRG 281 (290)
T ss_pred hCceEcHhHHHHHHHHHH---HHHHCCCCeEEEEECCCC
Confidence 566777888888888875 333466555678889998
No 203
>KOG4409 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=20.60 E-value=2.1e+02 Score=28.07 Aligned_cols=53 Identities=15% Similarity=0.182 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHhCCCccCeEEEEeeChhhHHHHHhhHHHHhhCCCCceEEEeeccccccc
Q 024663 149 VFQAVMEDLMAKGMKNAQNAVLSGCSAGGLTSILHCDNFRALFPVGTKVKCFADAGYFIN 208 (264)
Q Consensus 149 n~~avl~~L~~~gl~~a~~VllsG~SAGGlga~~~~d~v~~~lp~~a~v~~l~DSG~fld 208 (264)
-++.+=+|-..+|+. +.+|.|+|-||+=+...+ -.+|+.++-.+|.|..=|-.
T Consensus 146 fvesiE~WR~~~~L~---KmilvGHSfGGYLaa~YA----lKyPerV~kLiLvsP~Gf~~ 198 (365)
T KOG4409|consen 146 FVESIEQWRKKMGLE---KMILVGHSFGGYLAAKYA----LKYPERVEKLILVSPWGFPE 198 (365)
T ss_pred HHHHHHHHHHHcCCc---ceeEeeccchHHHHHHHH----HhChHhhceEEEeccccccc
Confidence 355555565554554 899999999996554433 23676777777777543433
No 204
>PRK11761 cysM cysteine synthase B; Provisional
Probab=20.44 E-value=1.2e+02 Score=28.16 Aligned_cols=36 Identities=19% Similarity=0.223 Sum_probs=26.6
Q ss_pred CeEEEEeeChhhHHHHHhhHHHHhhCCCCceEEEeeccc
Q 024663 166 QNAVLSGCSAGGLTSILHCDNFRALFPVGTKVKCFADAG 204 (264)
Q Consensus 166 ~~VllsG~SAGGlga~~~~d~v~~~lp~~a~v~~l~DSG 204 (264)
+.+++.++||..+++.++. ++..+.+.-|.+++|+|
T Consensus 250 ~gi~ve~ssga~laaa~~~---~~~~~~~~vV~v~~d~g 285 (296)
T PRK11761 250 EGIFCGVSSGGAVAAALRI---ARENPNAVIVAIICDRG 285 (296)
T ss_pred hCceEchhHHHHHHHHHHH---HHHCCCCeEEEEECCCC
Confidence 5677788899888888863 34466555677889999
No 205
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=20.36 E-value=86 Score=24.67 Aligned_cols=15 Identities=40% Similarity=0.696 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHhhCC
Q 024663 10 LNLLVCALILLKADG 24 (264)
Q Consensus 10 ~~~~~~~~~~~~~~~ 24 (264)
+++++.+||+++.+.
T Consensus 9 L~l~LA~lLlisSev 23 (95)
T PF07172_consen 9 LGLLLAALLLISSEV 23 (95)
T ss_pred HHHHHHHHHHHHhhh
Confidence 333444444444433
No 206
>PLN03087 BODYGUARD 1 domain containing hydrolase; Provisional
Probab=20.07 E-value=3.1e+02 Score=27.55 Aligned_cols=40 Identities=13% Similarity=0.120 Sum_probs=26.1
Q ss_pred cCeEEEEeeChhhHHHHHhhHHHHhhCCCCceEEEeeccccccc
Q 024663 165 AQNAVLSGCSAGGLTSILHCDNFRALFPVGTKVKCFADAGYFIN 208 (264)
Q Consensus 165 a~~VllsG~SAGGlga~~~~d~v~~~lp~~a~v~~l~DSG~fld 208 (264)
.+++.|.|.|.||+=++..+. ..|..++-.++.+++.+..
T Consensus 273 ~~k~~LVGhSmGG~iAl~~A~----~~Pe~V~~LVLi~~~~~~~ 312 (481)
T PLN03087 273 VKSFHIVAHSLGCILALALAV----KHPGAVKSLTLLAPPYYPV 312 (481)
T ss_pred CCCEEEEEECHHHHHHHHHHH----hChHhccEEEEECCCcccc
Confidence 467999999999987765444 4564444445556555443
No 207
>smart00824 PKS_TE Thioesterase. Peptide synthetases are involved in the non-ribosomal synthesis of peptide antibiotics. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates. There are also modules within the peptide synthetases that also share this similarity. With respect to antibiotic production, thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Thioesterases (non-integrated) have molecular masses of 25-29 kDa.
Probab=20.03 E-value=4.6e+02 Score=20.95 Aligned_cols=38 Identities=24% Similarity=0.256 Sum_probs=26.4
Q ss_pred cCeEEEEeeChhhHHHHHhhHHHHhhCCCCceEEEeecc
Q 024663 165 AQNAVLSGCSAGGLTSILHCDNFRALFPVGTKVKCFADA 203 (264)
Q Consensus 165 a~~VllsG~SAGGlga~~~~d~v~~~lp~~a~v~~l~DS 203 (264)
...+++.|.|.||.-++..+..+.+.- ..+.-.++.|+
T Consensus 63 ~~~~~l~g~s~Gg~~a~~~a~~l~~~~-~~~~~l~~~~~ 100 (212)
T smart00824 63 GRPFVLVGHSSGGLLAHAVAARLEARG-IPPAAVVLLDT 100 (212)
T ss_pred CCCeEEEEECHHHHHHHHHHHHHHhCC-CCCcEEEEEcc
Confidence 356899999999999988888777542 23333355554
Done!