Query 024665
Match_columns 264
No_of_seqs 385 out of 2819
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 06:27:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024665.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024665hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1596 Fibrillarin and relate 100.0 1E-54 2.2E-59 369.4 18.4 180 56-236 70-249 (317)
2 PTZ00146 fibrillarin; Provisio 100.0 4.8E-46 1E-50 330.9 24.4 172 67-238 55-230 (293)
3 PF01269 Fibrillarin: Fibrilla 100.0 1.7E-38 3.6E-43 270.0 17.1 164 71-235 1-165 (229)
4 COG1889 NOP1 Fibrillarin-like 100.0 1E-34 2.2E-39 241.9 16.4 163 67-235 2-167 (231)
5 PRK04266 fibrillarin; Provisio 99.9 6.5E-24 1.4E-28 184.5 16.6 161 72-238 4-169 (226)
6 COG2519 GCD14 tRNA(1-methylade 99.7 1.8E-16 3.9E-21 137.7 14.9 157 86-253 37-211 (256)
7 PF08704 GCD14: tRNA methyltra 99.7 1.5E-16 3.4E-21 139.5 11.6 139 114-255 9-164 (247)
8 KOG2915 tRNA(1-methyladenosine 99.6 5.3E-15 1.2E-19 129.0 14.4 159 85-251 47-224 (314)
9 TIGR00446 nop2p NOL1/NOP2/sun 99.6 3.2E-15 6.9E-20 132.9 11.5 103 99-223 46-150 (264)
10 PRK14903 16S rRNA methyltransf 99.6 2.1E-14 4.6E-19 136.0 12.4 104 99-223 212-317 (431)
11 COG2264 PrmA Ribosomal protein 99.5 4.7E-14 1E-18 126.3 11.5 159 65-257 111-283 (300)
12 PRK14901 16S rRNA methyltransf 99.5 5.8E-14 1.3E-18 133.2 12.2 106 99-223 227-335 (434)
13 PRK11933 yebU rRNA (cytosine-C 99.5 6.8E-14 1.5E-18 133.3 10.5 107 98-223 85-193 (470)
14 PRK10901 16S rRNA methyltransf 99.5 2.2E-13 4.7E-18 129.0 13.4 105 99-224 219-324 (427)
15 COG0144 Sun tRNA and rRNA cyto 99.5 1.1E-13 2.4E-18 127.9 11.1 136 100-254 132-283 (355)
16 PRK14902 16S rRNA methyltransf 99.5 2.8E-13 6.2E-18 128.8 12.8 105 98-223 224-330 (444)
17 PRK14904 16S rRNA methyltransf 99.5 2.8E-13 6.2E-18 128.9 11.2 102 99-223 225-328 (445)
18 TIGR00563 rsmB ribosomal RNA s 99.5 5E-13 1.1E-17 126.5 12.5 104 99-223 213-319 (426)
19 COG2226 UbiE Methylase involve 99.4 6.4E-13 1.4E-17 115.9 11.2 94 141-238 49-149 (238)
20 PF06325 PrmA: Ribosomal prote 99.4 2.6E-13 5.7E-18 122.1 8.8 155 66-257 111-278 (295)
21 PF01209 Ubie_methyltran: ubiE 99.4 1.7E-13 3.7E-18 119.7 5.7 96 140-238 44-146 (233)
22 COG4123 Predicted O-methyltran 99.4 9.8E-13 2.1E-17 115.0 9.8 116 141-258 42-169 (248)
23 TIGR00406 prmA ribosomal prote 99.4 1.1E-11 2.3E-16 111.7 14.5 121 125-257 145-278 (288)
24 PF13847 Methyltransf_31: Meth 99.3 1.2E-11 2.6E-16 100.7 11.4 79 142-222 2-82 (152)
25 PF12847 Methyltransf_18: Meth 99.3 1.8E-11 3.9E-16 93.9 11.4 74 143-221 1-78 (112)
26 PF01189 Nol1_Nop2_Fmu: NOL1/N 99.3 2.3E-12 5.1E-17 115.7 6.7 105 99-223 60-166 (283)
27 COG2242 CobL Precorrin-6B meth 99.3 5.4E-11 1.2E-15 99.4 14.2 114 131-251 25-149 (187)
28 COG2230 Cfa Cyclopropane fatty 99.3 1.2E-11 2.7E-16 109.9 10.9 135 88-255 33-172 (283)
29 PRK00377 cbiT cobalt-precorrin 99.3 5.5E-11 1.2E-15 101.2 14.2 110 140-251 37-159 (198)
30 TIGR00080 pimt protein-L-isoas 99.3 3.7E-11 8E-16 103.6 13.2 93 126-224 63-157 (215)
31 PRK13942 protein-L-isoaspartat 99.3 6.8E-11 1.5E-15 101.9 13.5 92 126-223 62-155 (212)
32 PF05175 MTS: Methyltransferas 99.3 1.7E-11 3.6E-16 102.0 9.3 75 143-222 31-107 (170)
33 KOG1122 tRNA and rRNA cytosine 99.3 1E-11 2.3E-16 114.3 7.8 106 98-223 215-322 (460)
34 PRK11188 rrmJ 23S rRNA methylt 99.3 2.3E-11 5E-16 104.6 9.3 102 141-257 49-163 (209)
35 PLN02233 ubiquinone biosynthes 99.3 1.2E-10 2.5E-15 103.5 13.9 96 140-238 70-175 (261)
36 PRK13944 protein-L-isoaspartat 99.3 1.2E-10 2.6E-15 99.8 13.5 91 127-223 59-152 (205)
37 COG2263 Predicted RNA methylas 99.2 4.7E-11 1E-15 99.7 10.2 89 126-222 28-117 (198)
38 TIGR02752 MenG_heptapren 2-hep 99.2 1.3E-10 2.9E-15 100.6 13.1 96 140-238 42-144 (231)
39 PF01135 PCMT: Protein-L-isoas 99.2 6.3E-11 1.4E-15 101.9 10.8 95 125-225 57-153 (209)
40 PF13659 Methyltransf_26: Meth 99.2 2.1E-11 4.6E-16 94.3 5.9 111 144-259 1-115 (117)
41 COG2265 TrmA SAM-dependent met 99.2 1.1E-10 2.4E-15 110.3 11.6 107 126-238 279-389 (432)
42 PRK14103 trans-aconitate 2-met 99.2 1.1E-10 2.3E-15 103.2 9.7 100 126-238 15-119 (255)
43 PRK14967 putative methyltransf 99.2 1.5E-10 3.2E-15 100.3 10.2 77 140-222 33-110 (223)
44 PF02475 Met_10: Met-10+ like- 99.2 1.6E-10 3.4E-15 98.7 9.6 77 141-222 99-178 (200)
45 PRK00517 prmA ribosomal protei 99.2 3.9E-10 8.4E-15 99.5 12.1 103 141-256 117-232 (250)
46 TIGR03704 PrmC_rel_meth putati 99.2 3.1E-10 6.8E-15 100.3 11.5 93 126-223 71-163 (251)
47 TIGR00138 gidB 16S rRNA methyl 99.2 6.2E-10 1.3E-14 93.7 12.7 91 143-238 42-135 (181)
48 TIGR00091 tRNA (guanine-N(7)-) 99.2 3.8E-10 8.3E-15 95.8 11.5 82 143-225 16-99 (194)
49 PLN02244 tocopherol O-methyltr 99.2 4.9E-10 1.1E-14 103.2 13.0 92 142-238 117-216 (340)
50 smart00650 rADc Ribosomal RNA 99.2 2.5E-10 5.4E-15 94.7 10.0 78 140-223 10-87 (169)
51 PRK10909 rsmD 16S rRNA m(2)G96 99.1 3.4E-10 7.5E-15 96.6 10.8 93 125-223 37-131 (199)
52 TIGR03533 L3_gln_methyl protei 99.1 7.1E-10 1.5E-14 99.7 13.2 76 142-222 120-198 (284)
53 PTZ00098 phosphoethanolamine N 99.1 7E-10 1.5E-14 98.6 12.8 76 140-220 49-124 (263)
54 TIGR02469 CbiT precorrin-6Y C5 99.1 1.6E-09 3.5E-14 84.0 13.3 100 140-255 16-118 (124)
55 PRK08287 cobalt-precorrin-6Y C 99.1 2.2E-09 4.7E-14 90.4 14.9 105 141-251 29-145 (187)
56 PRK00107 gidB 16S rRNA methylt 99.1 1.1E-09 2.3E-14 92.7 12.9 93 141-238 43-138 (187)
57 PRK13168 rumA 23S rRNA m(5)U19 99.1 3.2E-10 6.9E-15 108.0 10.7 106 127-238 284-393 (443)
58 PRK15451 tRNA cmo(5)U34 methyl 99.1 3.3E-10 7.1E-15 99.7 9.6 77 141-222 54-134 (247)
59 PRK08317 hypothetical protein; 99.1 1.5E-09 3.3E-14 93.5 13.5 108 125-238 4-117 (241)
60 PRK01683 trans-aconitate 2-met 99.1 6E-10 1.3E-14 98.3 11.0 101 127-238 18-123 (258)
61 COG2518 Pcm Protein-L-isoaspar 99.1 8.1E-10 1.8E-14 94.2 11.1 90 126-224 58-149 (209)
62 PRK00121 trmB tRNA (guanine-N( 99.1 1.2E-09 2.5E-14 93.5 12.2 82 142-225 39-123 (202)
63 PRK14966 unknown domain/N5-glu 99.1 8.9E-10 1.9E-14 103.2 12.3 79 141-222 249-328 (423)
64 COG2520 Predicted methyltransf 99.1 9.8E-10 2.1E-14 100.5 12.1 152 68-238 124-282 (341)
65 PF02353 CMAS: Mycolic acid cy 99.1 1.7E-10 3.7E-15 103.1 7.0 76 137-220 56-134 (273)
66 PRK07402 precorrin-6B methylas 99.1 4.4E-09 9.6E-14 89.2 15.1 95 141-238 38-135 (196)
67 PRK11873 arsM arsenite S-adeno 99.1 1E-09 2.2E-14 97.7 11.7 96 140-238 74-176 (272)
68 TIGR00537 hemK_rel_arch HemK-r 99.1 9.3E-10 2E-14 92.0 10.6 74 141-222 17-91 (179)
69 TIGR00740 methyltransferase, p 99.1 9E-10 2E-14 96.3 10.7 94 140-238 50-154 (239)
70 PRK14896 ksgA 16S ribosomal RN 99.1 2.3E-09 4.9E-14 95.1 13.3 86 127-223 16-101 (258)
71 PRK13943 protein-L-isoaspartat 99.1 2.1E-09 4.5E-14 98.2 13.2 92 126-223 66-159 (322)
72 TIGR00438 rrmJ cell division p 99.1 1.7E-09 3.7E-14 91.1 11.8 74 140-222 29-107 (188)
73 PRK15001 SAM-dependent 23S rib 99.1 8.7E-10 1.9E-14 102.6 10.8 78 141-223 226-308 (378)
74 TIGR01177 conserved hypothetic 99.1 1.3E-09 2.9E-14 99.9 11.7 89 126-223 168-258 (329)
75 PRK03522 rumB 23S rRNA methylu 99.1 5.3E-10 1.2E-14 101.9 8.8 92 142-238 172-267 (315)
76 PRK14121 tRNA (guanine-N(7)-)- 99.1 9.9E-10 2.2E-14 102.1 10.6 84 141-226 120-205 (390)
77 PRK15128 23S rRNA m(5)C1962 me 99.0 1.5E-09 3.2E-14 101.9 11.5 81 141-223 218-303 (396)
78 KOG1540 Ubiquinone biosynthesi 99.0 2.5E-09 5.5E-14 93.1 11.9 96 140-238 97-207 (296)
79 PRK11207 tellurite resistance 99.0 1.7E-09 3.6E-14 92.2 10.7 75 141-222 28-104 (197)
80 TIGR00536 hemK_fam HemK family 99.0 2.4E-09 5.1E-14 96.2 12.1 75 144-223 115-192 (284)
81 PRK09328 N5-glutamine S-adenos 99.0 3.5E-09 7.6E-14 94.0 12.8 91 125-223 93-185 (275)
82 TIGR00479 rumA 23S rRNA (uraci 99.0 2.3E-09 5E-14 101.7 12.2 95 141-238 290-389 (431)
83 PRK00312 pcm protein-L-isoaspa 99.0 5.8E-09 1.2E-13 89.5 13.5 89 126-223 64-154 (212)
84 PRK11805 N5-glutamine S-adenos 99.0 3.5E-09 7.6E-14 96.2 12.4 74 145-223 135-211 (307)
85 TIGR03534 RF_mod_PrmC protein- 99.0 3.9E-09 8.6E-14 92.2 11.9 90 125-223 73-164 (251)
86 TIGR00477 tehB tellurite resis 99.0 1.1E-09 2.4E-14 93.1 8.1 75 141-222 28-103 (195)
87 PHA03412 putative methyltransf 99.0 1.5E-09 3.3E-14 94.4 8.8 112 143-263 49-165 (241)
88 TIGR00095 RNA methyltransferas 99.0 2.4E-09 5.2E-14 90.8 9.8 94 126-223 34-131 (189)
89 COG2890 HemK Methylase of poly 99.0 2.1E-09 4.5E-14 96.5 10.0 71 146-222 113-185 (280)
90 PF13649 Methyltransf_25: Meth 99.0 1.9E-09 4.1E-14 81.6 8.0 71 147-220 1-74 (101)
91 PF08241 Methyltransf_11: Meth 99.0 2.2E-09 4.7E-14 79.0 8.2 92 148-255 1-93 (95)
92 COG0293 FtsJ 23S rRNA methylas 99.0 2.3E-09 5E-14 91.2 9.3 89 125-222 26-120 (205)
93 TIGR02085 meth_trns_rumB 23S r 99.0 1.6E-09 3.5E-14 101.0 9.0 93 141-238 231-327 (374)
94 COG2227 UbiG 2-polyprenyl-3-me 99.0 5.7E-10 1.2E-14 96.6 5.3 91 142-238 58-154 (243)
95 COG2813 RsmC 16S RNA G1207 met 99.0 5.3E-09 1.1E-13 93.6 11.2 77 140-222 155-233 (300)
96 PRK09489 rsmC 16S ribosomal RN 99.0 6.8E-09 1.5E-13 95.7 12.0 76 142-223 195-271 (342)
97 PLN02396 hexaprenyldihydroxybe 99.0 6.7E-09 1.4E-13 94.9 11.7 92 141-238 129-228 (322)
98 PRK14968 putative methyltransf 99.0 1E-08 2.3E-13 85.5 11.9 75 141-222 21-99 (188)
99 PF07021 MetW: Methionine bios 99.0 2.5E-09 5.4E-14 90.0 8.0 74 141-222 11-84 (193)
100 PRK00274 ksgA 16S ribosomal RN 99.0 4.8E-09 1E-13 93.7 10.3 87 127-223 29-115 (272)
101 PRK11036 putative S-adenosyl-L 98.9 6E-09 1.3E-13 92.0 10.7 92 142-238 43-142 (255)
102 PTZ00338 dimethyladenosine tra 98.9 5.1E-09 1.1E-13 94.6 10.1 86 127-223 23-111 (294)
103 PRK01544 bifunctional N5-gluta 98.9 8.5E-09 1.8E-13 99.7 11.9 75 143-222 138-215 (506)
104 COG0030 KsgA Dimethyladenosine 98.9 9.1E-09 2E-13 90.8 10.3 88 127-222 17-104 (259)
105 PRK10258 biotin biosynthesis p 98.9 6.7E-09 1.5E-13 91.3 9.6 89 141-238 40-133 (251)
106 TIGR03587 Pse_Me-ase pseudamin 98.9 1.6E-08 3.5E-13 86.7 11.6 74 141-222 41-114 (204)
107 PF05958 tRNA_U5-meth_tr: tRNA 98.9 3.2E-09 6.8E-14 98.3 7.7 90 126-222 183-287 (352)
108 PF01170 UPF0020: Putative RNA 98.9 1.1E-08 2.3E-13 86.0 10.2 92 125-222 13-115 (179)
109 PRK00050 16S rRNA m(4)C1402 me 98.9 6.9E-09 1.5E-13 93.6 9.5 95 125-222 4-99 (296)
110 TIGR02072 BioC biotin biosynth 98.9 8.5E-09 1.8E-13 88.9 9.8 106 127-238 18-128 (240)
111 PLN02781 Probable caffeoyl-CoA 98.9 1E-08 2.3E-13 89.7 10.3 98 141-238 66-171 (234)
112 KOG2904 Predicted methyltransf 98.9 9.8E-09 2.1E-13 90.2 9.9 95 127-222 132-231 (328)
113 PHA03411 putative methyltransf 98.9 6.8E-09 1.5E-13 92.3 9.0 74 141-222 62-135 (279)
114 PF03602 Cons_hypoth95: Conser 98.9 4.6E-09 1E-13 88.6 7.6 100 122-224 22-125 (183)
115 KOG3191 Predicted N6-DNA-methy 98.9 1.1E-08 2.5E-13 84.8 9.4 75 144-222 44-119 (209)
116 PRK12335 tellurite resistance 98.9 1.4E-08 3.1E-13 91.3 10.9 73 143-222 120-193 (287)
117 PRK05785 hypothetical protein; 98.9 1.4E-08 3E-13 88.4 10.0 86 142-238 50-140 (226)
118 PRK05031 tRNA (uracil-5-)-meth 98.9 7.7E-09 1.7E-13 96.1 8.8 76 145-223 208-298 (362)
119 TIGR00755 ksgA dimethyladenosi 98.9 2.3E-08 5E-13 88.3 11.4 87 126-223 15-104 (253)
120 PLN02336 phosphoethanolamine N 98.9 3.7E-08 8E-13 94.5 13.6 94 140-238 263-362 (475)
121 PRK11783 rlmL 23S rRNA m(2)G24 98.9 9.4E-09 2E-13 103.1 9.6 79 141-223 536-618 (702)
122 COG1092 Predicted SAM-dependen 98.9 7.5E-09 1.6E-13 96.5 8.2 77 144-222 218-299 (393)
123 COG4106 Tam Trans-aconitate me 98.9 5.8E-09 1.3E-13 88.9 6.8 91 140-238 27-122 (257)
124 COG0742 N6-adenine-specific me 98.8 3.2E-08 6.9E-13 83.2 10.9 97 125-224 26-125 (187)
125 PLN02336 phosphoethanolamine N 98.8 1.9E-08 4.1E-13 96.4 10.4 78 141-222 35-112 (475)
126 PLN02490 MPBQ/MSBQ methyltrans 98.8 4.5E-08 9.7E-13 90.0 12.3 92 142-238 112-208 (340)
127 PRK06922 hypothetical protein; 98.8 2E-08 4.4E-13 98.4 10.6 80 141-222 416-496 (677)
128 KOG2198 tRNA cytosine-5-methyl 98.8 1.4E-08 3E-13 92.8 8.6 83 140-222 152-245 (375)
129 PRK04338 N(2),N(2)-dimethylgua 98.8 5.3E-08 1.2E-12 91.0 12.6 92 143-238 57-151 (382)
130 PLN02476 O-methyltransferase 98.8 3.5E-08 7.5E-13 88.2 10.9 98 141-238 116-221 (278)
131 PRK04457 spermidine synthase; 98.8 7E-08 1.5E-12 85.8 12.7 78 142-222 65-145 (262)
132 PRK00216 ubiE ubiquinone/menaq 98.8 1.1E-07 2.3E-12 82.2 13.3 95 141-238 49-151 (239)
133 TIGR02021 BchM-ChlM magnesium 98.8 4E-08 8.7E-13 84.7 10.6 71 141-220 53-126 (219)
134 TIGR02143 trmA_only tRNA (urac 98.8 1.8E-08 3.9E-13 93.3 9.0 76 145-223 199-289 (353)
135 PRK11088 rrmA 23S rRNA methylt 98.8 5.1E-08 1.1E-12 87.0 10.9 90 141-238 83-174 (272)
136 PRK15068 tRNA mo(5)U34 methylt 98.8 7.2E-08 1.6E-12 88.2 12.0 92 141-238 120-219 (322)
137 KOG1270 Methyltransferases [Co 98.8 1.6E-08 3.5E-13 88.5 7.3 86 144-238 90-188 (282)
138 KOG4589 Cell division protein 98.8 9.4E-09 2E-13 85.7 5.4 89 125-222 50-145 (232)
139 TIGR03840 TMPT_Se_Te thiopurin 98.8 3.1E-08 6.8E-13 85.5 9.0 74 141-219 32-119 (213)
140 PF03848 TehB: Tellurite resis 98.8 1.3E-07 2.7E-12 80.2 12.1 75 141-222 28-103 (192)
141 COG3963 Phospholipid N-methylt 98.8 7.9E-08 1.7E-12 78.9 10.3 95 122-222 30-126 (194)
142 PF09445 Methyltransf_15: RNA 98.8 1.6E-08 3.5E-13 83.5 6.3 75 145-222 1-78 (163)
143 PRK13255 thiopurine S-methyltr 98.8 3.8E-08 8.3E-13 85.2 9.0 74 141-219 35-122 (218)
144 PRK06202 hypothetical protein; 98.8 6.8E-08 1.5E-12 84.0 10.6 78 141-222 58-138 (232)
145 PRK11705 cyclopropane fatty ac 98.8 1.1E-07 2.3E-12 89.1 12.4 74 139-221 163-236 (383)
146 TIGR01934 MenG_MenH_UbiE ubiqu 98.7 1.9E-07 4E-12 79.8 13.0 95 141-238 37-136 (223)
147 PRK00811 spermidine synthase; 98.7 3.4E-07 7.3E-12 82.4 14.9 80 142-224 75-161 (283)
148 PF01728 FtsJ: FtsJ-like methy 98.7 2.8E-09 6E-14 89.2 1.2 85 129-222 6-100 (181)
149 PLN03075 nicotianamine synthas 98.7 1.5E-07 3.2E-12 84.8 12.3 95 141-238 121-226 (296)
150 PF02390 Methyltransf_4: Putat 98.7 5.7E-08 1.2E-12 82.7 9.0 110 144-256 18-130 (195)
151 PF01596 Methyltransf_3: O-met 98.7 2.3E-08 5E-13 85.8 6.5 81 142-222 44-130 (205)
152 PLN02585 magnesium protoporphy 98.7 9E-08 2E-12 87.3 10.3 85 127-220 128-219 (315)
153 COG2521 Predicted archaeal met 98.7 2.9E-08 6.2E-13 85.6 6.4 77 141-224 132-216 (287)
154 smart00828 PKS_MT Methyltransf 98.7 1.9E-07 4.1E-12 80.5 11.6 71 145-220 1-74 (224)
155 TIGR00452 methyltransferase, p 98.7 1.9E-07 4.2E-12 85.1 11.9 93 140-238 118-218 (314)
156 PLN02672 methionine S-methyltr 98.7 6.1E-08 1.3E-12 100.1 9.1 76 144-222 119-212 (1082)
157 PRK07580 Mg-protoporphyrin IX 98.7 2.7E-07 5.8E-12 79.6 11.8 84 130-222 50-136 (230)
158 COG4122 Predicted O-methyltran 98.7 2.5E-07 5.4E-12 79.9 11.2 97 141-238 57-159 (219)
159 PF00398 RrnaAD: Ribosomal RNA 98.7 1.8E-07 3.9E-12 83.2 10.3 92 126-223 16-107 (262)
160 PLN02366 spermidine synthase 98.6 4.3E-07 9.3E-12 82.6 12.7 81 142-224 90-176 (308)
161 TIGR00478 tly hemolysin TlyA f 98.6 4.7E-07 1E-11 78.9 11.8 57 125-183 56-113 (228)
162 KOG0820 Ribosomal RNA adenine 98.6 2.9E-07 6.2E-12 81.1 10.3 85 127-222 45-132 (315)
163 TIGR02081 metW methionine bios 98.6 2.9E-07 6.3E-12 77.9 10.0 74 141-222 11-84 (194)
164 TIGR00308 TRM1 tRNA(guanine-26 98.6 2.8E-07 6.1E-12 85.9 10.7 91 145-237 46-139 (374)
165 KOG3420 Predicted RNA methylas 98.6 6.8E-08 1.5E-12 77.6 5.3 95 123-222 27-123 (185)
166 cd02440 AdoMet_MTases S-adenos 98.6 3.5E-07 7.5E-12 66.9 8.7 75 146-224 1-77 (107)
167 KOG2187 tRNA uracil-5-methyltr 98.6 9.1E-08 2E-12 90.6 6.7 106 127-236 366-480 (534)
168 smart00138 MeTrc Methyltransfe 98.6 1.9E-07 4E-12 83.2 8.4 77 141-220 97-210 (264)
169 PF10672 Methyltrans_SAM: S-ad 98.6 2.4E-07 5.2E-12 83.2 9.1 79 142-222 122-204 (286)
170 KOG1271 Methyltransferases [Ge 98.6 6.7E-08 1.5E-12 80.4 5.0 69 146-218 70-141 (227)
171 COG0220 Predicted S-adenosylme 98.6 2.2E-07 4.8E-12 80.9 8.0 109 145-257 50-162 (227)
172 PF05401 NodS: Nodulation prot 98.6 2.5E-07 5.5E-12 78.2 8.0 73 142-221 42-114 (201)
173 PRK03612 spermidine synthase; 98.6 5.2E-07 1.1E-11 87.7 11.2 81 142-225 296-385 (521)
174 KOG1499 Protein arginine N-met 98.5 2E-07 4.4E-12 84.7 7.4 76 140-220 57-134 (346)
175 PF08242 Methyltransf_12: Meth 98.5 1.8E-08 3.9E-13 75.7 0.3 73 148-222 1-75 (99)
176 PF13489 Methyltransf_23: Meth 98.5 3.8E-07 8.2E-12 73.7 7.9 68 141-222 20-87 (161)
177 KOG1500 Protein arginine N-met 98.5 4.4E-07 9.6E-12 82.0 8.7 76 141-222 175-252 (517)
178 TIGR02716 C20_methyl_CrtF C-20 98.5 9.2E-07 2E-11 80.1 10.9 74 140-220 146-222 (306)
179 COG1189 Predicted rRNA methyla 98.5 1.1E-06 2.5E-11 76.0 10.7 112 96-222 40-153 (245)
180 PRK11727 23S rRNA mA1618 methy 98.5 1.2E-06 2.6E-11 80.0 11.4 79 143-222 114-198 (321)
181 TIGR03438 probable methyltrans 98.5 9.6E-07 2.1E-11 80.0 10.6 65 141-205 61-128 (301)
182 PLN02589 caffeoyl-CoA O-methyl 98.5 1E-06 2.2E-11 77.8 10.4 82 141-222 77-165 (247)
183 PRK13256 thiopurine S-methyltr 98.5 7E-07 1.5E-11 77.7 8.6 76 140-218 40-129 (226)
184 TIGR00417 speE spermidine synt 98.5 2.1E-06 4.5E-11 76.6 11.6 78 144-224 73-156 (270)
185 KOG2360 Proliferation-associat 98.4 3.6E-07 7.8E-12 83.8 6.5 91 125-222 201-293 (413)
186 COG1041 Predicted DNA modifica 98.4 8.4E-07 1.8E-11 81.0 8.8 120 126-257 183-308 (347)
187 PRK10742 putative methyltransf 98.4 1.2E-06 2.6E-11 76.8 9.3 81 140-225 83-176 (250)
188 PRK11760 putative 23S rRNA C24 98.4 2.3E-06 5E-11 78.2 11.4 74 141-225 209-283 (357)
189 PRK01581 speE spermidine synth 98.4 7.9E-07 1.7E-11 82.1 8.4 79 144-225 151-238 (374)
190 PRK11783 rlmL 23S rRNA m(2)G24 98.4 1.7E-06 3.7E-11 87.0 11.0 97 123-222 172-312 (702)
191 COG0116 Predicted N6-adenine-s 98.4 3.1E-06 6.8E-11 78.3 11.0 102 115-222 163-308 (381)
192 PRK05134 bifunctional 3-demeth 98.4 4.5E-06 9.7E-11 72.4 11.2 76 141-221 46-122 (233)
193 TIGR01983 UbiG ubiquinone bios 98.3 3.7E-06 8.1E-11 72.2 10.0 91 143-238 45-142 (224)
194 PRK04148 hypothetical protein; 98.3 9.2E-06 2E-10 64.9 11.2 77 142-228 15-92 (134)
195 KOG1541 Predicted protein carb 98.3 1.1E-06 2.3E-11 75.4 6.1 85 126-221 34-120 (270)
196 PF05185 PRMT5: PRMT5 arginine 98.3 3.1E-06 6.7E-11 80.7 8.4 75 144-222 187-267 (448)
197 COG4076 Predicted RNA methylas 98.2 5.7E-06 1.2E-10 69.4 8.4 70 145-222 34-105 (252)
198 PF02384 N6_Mtase: N-6 DNA Met 98.2 4.5E-06 9.8E-11 75.6 8.5 82 140-222 43-134 (311)
199 KOG3010 Methyltransferase [Gen 98.2 2.4E-06 5.2E-11 74.1 6.2 99 141-260 30-138 (261)
200 TIGR00006 S-adenosyl-methyltra 98.2 1.6E-05 3.4E-10 72.1 10.2 94 125-222 5-101 (305)
201 KOG1661 Protein-L-isoaspartate 98.1 1.4E-05 3E-10 68.1 8.9 95 126-224 66-173 (237)
202 PF08123 DOT1: Histone methyla 98.1 3.5E-05 7.5E-10 66.2 11.4 84 139-223 38-132 (205)
203 PRK01544 bifunctional N5-gluta 98.1 6.1E-06 1.3E-10 80.0 7.5 84 142-227 346-431 (506)
204 PF10294 Methyltransf_16: Puta 98.1 1.9E-05 4.1E-10 65.9 9.5 106 114-222 14-129 (173)
205 PLN02823 spermine synthase 98.1 2.6E-05 5.7E-10 71.8 10.5 78 144-224 104-187 (336)
206 KOG1099 SAM-dependent methyltr 98.1 3.3E-06 7.2E-11 72.7 3.6 89 125-222 22-124 (294)
207 PF05724 TPMT: Thiopurine S-me 98.1 9.4E-06 2E-10 70.3 6.5 74 140-218 34-121 (218)
208 KOG2361 Predicted methyltransf 98.0 2.4E-06 5.3E-11 74.1 2.5 73 146-219 74-150 (264)
209 KOG1098 Putative SAM-dependent 98.0 1E-05 2.2E-10 78.2 5.6 89 125-222 25-119 (780)
210 COG4976 Predicted methyltransf 97.9 3.8E-06 8.2E-11 72.5 1.4 84 126-219 111-194 (287)
211 KOG1663 O-methyltransferase [S 97.9 7E-05 1.5E-09 64.7 8.9 81 141-221 71-157 (237)
212 PF08003 Methyltransf_9: Prote 97.9 0.0001 2.2E-09 66.4 9.9 91 142-238 114-212 (315)
213 KOG4300 Predicted methyltransf 97.9 5.4E-05 1.2E-09 64.5 7.5 89 146-238 79-175 (252)
214 KOG2730 Methylase [General fun 97.8 7E-05 1.5E-09 64.3 7.8 93 121-222 73-174 (263)
215 PF01564 Spermine_synth: Sperm 97.8 9.5E-05 2.1E-09 65.2 8.0 79 143-224 76-161 (246)
216 PF03291 Pox_MCEL: mRNA cappin 97.8 0.00013 2.9E-09 67.0 9.2 93 126-222 47-154 (331)
217 TIGR02987 met_A_Alw26 type II 97.8 0.0001 2.2E-09 71.8 8.8 80 143-222 31-121 (524)
218 PF04445 SAM_MT: Putative SAM- 97.7 0.00012 2.6E-09 63.8 7.6 81 140-225 70-163 (234)
219 KOG2899 Predicted methyltransf 97.6 0.00012 2.7E-09 63.7 5.9 46 141-187 56-101 (288)
220 TIGR01444 fkbM_fam methyltrans 97.6 0.00025 5.5E-09 56.4 7.2 57 146-203 1-59 (143)
221 COG0421 SpeE Spermidine syntha 97.5 0.00082 1.8E-08 60.4 10.0 81 140-224 74-160 (282)
222 PF13578 Methyltransf_24: Meth 97.5 0.0001 2.2E-09 55.9 3.4 80 148-228 1-84 (106)
223 PF05219 DREV: DREV methyltran 97.5 0.00092 2E-08 59.0 9.5 83 143-238 94-181 (265)
224 PF02527 GidB: rRNA small subu 97.4 0.0021 4.7E-08 54.2 11.3 78 146-229 51-131 (184)
225 PF01861 DUF43: Protein of unk 97.4 0.001 2.2E-08 58.1 9.0 81 142-225 43-124 (243)
226 PF00891 Methyltransf_2: O-met 97.4 0.0024 5.1E-08 55.7 11.3 70 140-221 97-166 (241)
227 PF13679 Methyltransf_32: Meth 97.4 0.0011 2.4E-08 53.2 8.5 75 141-219 23-105 (141)
228 KOG3973 Uncharacterized conser 97.3 0.00065 1.4E-08 61.6 7.2 6 60-65 457-462 (465)
229 cd00315 Cyt_C5_DNA_methylase C 97.3 0.0014 3E-08 58.7 9.2 71 146-223 2-72 (275)
230 PF01795 Methyltransf_5: MraW 97.3 0.00042 9.1E-09 62.9 5.8 94 125-222 5-102 (310)
231 PF12147 Methyltransf_20: Puta 97.3 0.003 6.5E-08 56.7 10.8 78 145-222 137-218 (311)
232 KOG1975 mRNA cap methyltransfe 97.2 0.0017 3.6E-08 59.0 8.6 110 140-251 114-248 (389)
233 COG0357 GidB Predicted S-adeno 97.2 0.0053 1.1E-07 53.0 11.2 75 144-223 68-145 (215)
234 COG0275 Predicted S-adenosylme 97.2 0.0034 7.3E-08 56.6 10.2 95 125-222 8-105 (314)
235 COG3897 Predicted methyltransf 97.1 0.00098 2.1E-08 56.4 5.5 71 141-220 77-149 (218)
236 PF06080 DUF938: Protein of un 97.1 0.0022 4.8E-08 54.9 7.3 75 143-219 25-108 (204)
237 COG4798 Predicted methyltransf 97.0 0.00092 2E-08 56.6 4.8 76 140-219 45-128 (238)
238 KOG2671 Putative RNA methylase 96.9 0.00061 1.3E-08 62.2 2.5 79 140-223 205-294 (421)
239 COG0286 HsdM Type I restrictio 96.9 0.0037 8E-08 60.5 8.1 82 141-223 184-274 (489)
240 TIGR03439 methyl_EasF probable 96.8 0.0061 1.3E-07 55.8 8.8 65 141-205 74-145 (319)
241 PRK00536 speE spermidine synth 96.8 0.036 7.7E-07 49.4 12.9 86 144-238 73-164 (262)
242 PF05971 Methyltransf_10: Prot 96.7 0.008 1.7E-07 54.4 8.6 78 144-222 103-186 (299)
243 KOG2078 tRNA modification enzy 96.7 0.0014 3.1E-08 61.3 3.4 77 121-205 232-312 (495)
244 KOG1227 Putative methyltransfe 96.7 0.0015 3.3E-08 58.6 3.4 91 143-238 194-288 (351)
245 PRK10611 chemotaxis methyltran 96.6 0.009 1.9E-07 53.9 8.1 73 145-219 117-229 (287)
246 PF00145 DNA_methylase: C-5 cy 96.6 0.012 2.6E-07 53.0 8.6 69 146-222 2-70 (335)
247 PF04989 CmcI: Cephalosporin h 96.5 0.0038 8.1E-08 53.5 4.8 81 141-222 31-120 (206)
248 PLN02232 ubiquinone biosynthes 96.5 0.0085 1.8E-07 49.1 6.6 64 172-238 1-74 (160)
249 PTZ00146 fibrillarin; Provisio 96.5 0.007 1.5E-07 54.6 6.4 13 193-205 202-214 (293)
250 PF09243 Rsm22: Mitochondrial 96.4 0.015 3.2E-07 52.1 8.4 39 145-183 35-73 (274)
251 PF06962 rRNA_methylase: Putat 96.3 0.0084 1.8E-07 48.3 5.3 93 170-264 1-127 (140)
252 PF04816 DUF633: Family of unk 96.2 0.021 4.6E-07 49.0 7.8 72 147-222 1-76 (205)
253 COG4262 Predicted spermidine s 96.2 0.015 3.3E-07 53.8 7.1 81 141-225 287-377 (508)
254 PF01739 CheR: CheR methyltran 96.2 0.013 2.7E-07 50.0 6.2 75 143-220 31-143 (196)
255 PF11599 AviRa: RRNA methyltra 96.2 0.034 7.4E-07 47.9 8.6 79 144-222 52-177 (246)
256 COG1352 CheR Methylase of chem 96.2 0.03 6.5E-07 50.0 8.6 74 144-220 97-209 (268)
257 TIGR00675 dcm DNA-methyltransf 96.1 0.023 4.9E-07 51.9 7.6 68 147-222 1-68 (315)
258 PF03059 NAS: Nicotianamine sy 96.0 0.11 2.4E-06 46.6 11.7 75 145-222 122-201 (276)
259 PHA01634 hypothetical protein 96.0 0.04 8.7E-07 43.7 7.5 74 143-222 28-101 (156)
260 PF01555 N6_N4_Mtase: DNA meth 95.9 0.0096 2.1E-07 50.5 4.1 49 126-181 178-226 (231)
261 COG0270 Dcm Site-specific DNA 95.7 0.058 1.3E-06 49.5 8.8 73 145-223 4-77 (328)
262 KOG2940 Predicted methyltransf 95.7 0.034 7.5E-07 48.5 6.6 89 143-238 72-167 (325)
263 COG1064 AdhP Zn-dependent alco 95.5 0.1 2.2E-06 48.1 9.6 93 135-238 158-252 (339)
264 KOG1709 Guanidinoacetate methy 95.5 0.034 7.3E-07 48.0 5.9 79 141-222 99-178 (271)
265 PF02005 TRM: N2,N2-dimethylgu 95.5 0.045 9.8E-07 51.3 7.1 92 143-236 49-145 (377)
266 COG1867 TRM1 N2,N2-dimethylgua 95.4 0.15 3.2E-06 47.3 10.1 89 144-235 53-144 (380)
267 PF07091 FmrO: Ribosomal RNA m 95.4 0.072 1.6E-06 47.0 7.7 75 141-220 103-178 (251)
268 PF05148 Methyltransf_8: Hypot 95.4 0.057 1.2E-06 46.4 6.9 86 131-238 62-151 (219)
269 COG0500 SmtA SAM-dependent met 95.3 0.24 5.2E-06 37.2 9.8 71 147-220 52-126 (257)
270 KOG3115 Methyltransferase-like 95.3 0.051 1.1E-06 46.5 6.1 80 145-225 62-150 (249)
271 PF05891 Methyltransf_PK: AdoM 95.3 0.041 8.8E-07 47.5 5.6 95 143-251 55-152 (218)
272 COG2933 Predicted SAM-dependen 95.3 0.15 3.2E-06 45.4 9.1 72 140-222 208-279 (358)
273 PRK11524 putative methyltransf 95.1 0.04 8.7E-07 49.5 5.3 39 140-181 205-243 (284)
274 COG1568 Predicted methyltransf 94.9 0.11 2.3E-06 46.6 7.3 79 143-224 152-232 (354)
275 PRK10458 DNA cytosine methylas 94.7 0.2 4.3E-06 48.3 9.3 78 144-223 88-179 (467)
276 KOG3045 Predicted RNA methylas 94.4 0.15 3.4E-06 45.2 7.0 57 144-222 181-237 (325)
277 PRK13699 putative methylase; P 94.3 0.073 1.6E-06 46.3 5.0 39 140-181 160-198 (227)
278 PF02254 TrkA_N: TrkA-N domain 94.3 0.26 5.7E-06 37.4 7.5 82 152-238 4-89 (116)
279 KOG1596 Fibrillarin and relate 94.1 0.21 4.6E-06 43.9 7.1 18 147-164 186-203 (317)
280 KOG3987 Uncharacterized conser 94.0 0.02 4.3E-07 49.2 0.6 39 143-184 112-150 (288)
281 PF04672 Methyltransf_19: S-ad 93.8 0.17 3.8E-06 45.1 6.4 62 145-206 70-135 (267)
282 KOG3924 Putative protein methy 93.2 0.19 4.2E-06 47.0 5.7 95 127-222 176-281 (419)
283 COG2384 Predicted SAM-dependen 92.9 0.63 1.4E-05 40.3 8.0 79 141-223 14-96 (226)
284 COG1748 LYS9 Saccharopine dehy 92.8 0.66 1.4E-05 43.7 8.8 79 145-227 2-82 (389)
285 KOG1501 Arginine N-methyltrans 92.6 0.29 6.3E-06 46.5 6.0 58 146-205 69-129 (636)
286 PF10237 N6-adenineMlase: Prob 92.2 2.1 4.6E-05 35.3 10.1 71 143-223 25-96 (162)
287 KOG2352 Predicted spermine/spe 91.9 0.46 9.9E-06 45.6 6.6 110 141-259 45-161 (482)
288 PF07757 AdoMet_MTase: Predict 91.5 0.25 5.4E-06 38.0 3.6 49 128-179 42-91 (112)
289 KOG2793 Putative N2,N2-dimethy 90.3 1.2 2.6E-05 39.4 7.2 75 143-219 86-168 (248)
290 KOG1253 tRNA methyltransferase 90.3 0.26 5.6E-06 47.4 3.3 93 143-235 109-206 (525)
291 TIGR00497 hsdM type I restrict 90.1 1.3 2.9E-05 43.0 8.2 79 143-222 217-302 (501)
292 PF03141 Methyltransf_29: Puta 90.0 0.071 1.5E-06 51.3 -0.8 67 146-220 120-188 (506)
293 PRK12829 short chain dehydroge 89.8 4.7 0.0001 34.7 10.7 80 141-222 8-95 (264)
294 KOG1269 SAM-dependent methyltr 89.6 0.58 1.3E-05 43.7 5.0 94 140-238 107-208 (364)
295 PRK05786 fabG 3-ketoacyl-(acyl 89.4 4 8.6E-05 34.6 9.8 79 143-222 4-90 (238)
296 PF05206 TRM13: Methyltransfer 89.2 1.1 2.4E-05 39.8 6.3 72 134-205 8-86 (259)
297 PLN02896 cinnamyl-alcohol dehy 89.2 2.4 5.2E-05 38.7 8.8 79 143-222 9-88 (353)
298 KOG4058 Uncharacterized conser 89.1 1.3 2.8E-05 36.2 6.0 39 141-181 70-108 (199)
299 KOG1331 Predicted methyltransf 89.0 0.46 1E-05 42.6 3.7 66 141-219 43-109 (293)
300 PF11312 DUF3115: Protein of u 88.9 2.9 6.3E-05 38.1 8.8 136 114-255 42-237 (315)
301 KOG3178 Hydroxyindole-O-methyl 88.8 1 2.3E-05 41.5 5.9 65 143-219 177-242 (342)
302 PF07942 N2227: N2227-like pro 88.7 3 6.6E-05 37.3 8.7 35 143-180 56-90 (270)
303 PRK06138 short chain dehydroge 88.7 6.3 0.00014 33.6 10.7 78 144-222 5-90 (252)
304 PRK05872 short chain dehydroge 88.7 5.7 0.00012 35.4 10.7 79 143-222 8-94 (296)
305 KOG0822 Protein kinase inhibit 88.7 0.88 1.9E-05 44.3 5.5 75 145-222 369-448 (649)
306 COG1565 Uncharacterized conser 88.4 1.7 3.7E-05 40.4 7.1 58 126-183 60-124 (370)
307 PRK06940 short chain dehydroge 88.3 6.6 0.00014 34.5 10.7 75 146-222 4-85 (275)
308 PF11968 DUF3321: Putative met 88.1 1.2 2.6E-05 38.5 5.6 59 145-220 53-111 (219)
309 PRK07454 short chain dehydroge 88.0 9.8 0.00021 32.3 11.3 79 143-222 5-92 (241)
310 PF02636 Methyltransf_28: Puta 87.9 1.1 2.3E-05 39.4 5.3 39 145-183 20-65 (252)
311 PRK05867 short chain dehydroge 87.8 10 0.00022 32.6 11.4 79 143-222 8-95 (253)
312 KOG2651 rRNA adenine N-6-methy 87.7 1.7 3.8E-05 40.7 6.6 37 142-180 152-188 (476)
313 TIGR03589 PseB UDP-N-acetylglu 87.7 2.6 5.7E-05 38.2 7.9 77 144-222 4-83 (324)
314 PRK07063 short chain dehydroge 87.7 8.9 0.00019 33.0 11.0 79 143-222 6-95 (260)
315 PRK06139 short chain dehydroge 87.6 6.3 0.00014 36.0 10.4 79 143-222 6-93 (330)
316 PRK01747 mnmC bifunctional tRN 87.3 2.6 5.7E-05 42.3 8.4 76 144-221 58-174 (662)
317 PRK12939 short chain dehydroge 87.1 9.9 0.00021 32.3 10.9 79 143-222 6-93 (250)
318 PRK12429 3-hydroxybutyrate deh 87.1 9.9 0.00021 32.4 10.9 78 144-222 4-90 (258)
319 COG3129 Predicted SAM-dependen 87.0 3.4 7.3E-05 36.4 7.6 82 142-224 77-164 (292)
320 TIGR03206 benzo_BadH 2-hydroxy 86.9 11 0.00024 32.0 11.1 78 144-222 3-89 (250)
321 PLN03209 translocon at the inn 86.5 4.6 9.9E-05 40.1 9.2 83 139-222 75-168 (576)
322 PTZ00357 methyltransferase; Pr 86.5 2.8 6E-05 42.3 7.6 77 146-222 703-801 (1072)
323 PRK10669 putative cation:proto 86.4 2.7 5.9E-05 41.3 7.8 82 152-238 423-508 (558)
324 PRK06172 short chain dehydroge 86.3 9.7 0.00021 32.6 10.5 79 143-222 6-93 (253)
325 PRK09072 short chain dehydroge 86.3 8.5 0.00018 33.3 10.1 79 143-222 4-89 (263)
326 PLN02214 cinnamoyl-CoA reducta 86.2 5.4 0.00012 36.4 9.2 80 142-222 8-90 (342)
327 PF10354 DUF2431: Domain of un 85.9 9.5 0.00021 31.5 9.6 102 150-255 3-121 (166)
328 PLN02662 cinnamyl-alcohol dehy 85.8 3.1 6.7E-05 37.2 7.2 78 144-222 4-85 (322)
329 COG0569 TrkA K+ transport syst 85.8 4.7 0.0001 34.9 8.1 84 147-235 3-88 (225)
330 PRK07666 fabG 3-ketoacyl-(acyl 85.7 14 0.0003 31.3 11.0 78 144-222 7-93 (239)
331 PRK07097 gluconate 5-dehydroge 85.7 8.7 0.00019 33.3 9.9 80 143-222 9-96 (265)
332 PRK07904 short chain dehydroge 85.7 4 8.7E-05 35.5 7.7 81 141-222 5-96 (253)
333 PRK09291 short chain dehydroge 85.6 16 0.00035 31.2 11.5 77 145-222 3-82 (257)
334 PRK06194 hypothetical protein; 85.6 11 0.00025 32.9 10.7 78 144-222 6-92 (287)
335 PRK08267 short chain dehydroge 85.5 7.2 0.00016 33.6 9.3 75 146-222 3-86 (260)
336 PF06460 NSP13: Coronavirus NS 85.5 2.9 6.3E-05 37.2 6.5 103 140-256 58-166 (299)
337 PRK08339 short chain dehydroge 85.5 15 0.00033 31.9 11.4 79 143-222 7-94 (263)
338 PRK06181 short chain dehydroge 85.4 11 0.00024 32.4 10.4 77 145-222 2-87 (263)
339 TIGR01963 PHB_DH 3-hydroxybuty 85.2 20 0.00043 30.4 11.8 76 146-222 3-87 (255)
340 PRK06949 short chain dehydroge 85.2 18 0.00039 30.9 11.6 79 143-222 8-95 (258)
341 PF03435 Saccharop_dh: Sacchar 85.1 6.1 0.00013 36.7 9.1 75 147-224 1-78 (386)
342 KOG1562 Spermidine synthase [A 85.1 2 4.2E-05 39.0 5.4 83 141-225 119-207 (337)
343 PRK09496 trkA potassium transp 85.1 6.2 0.00014 37.3 9.3 76 144-224 231-308 (453)
344 PRK06124 gluconate 5-dehydroge 85.0 9.1 0.0002 32.8 9.7 79 143-222 10-97 (256)
345 PRK08340 glucose-1-dehydrogena 84.9 5.8 0.00013 34.3 8.4 76 146-222 2-85 (259)
346 PRK08226 short chain dehydroge 84.9 15 0.00031 31.7 10.9 79 143-222 5-91 (263)
347 PLN02253 xanthoxin dehydrogena 84.7 5.4 0.00012 34.9 8.2 79 143-222 17-103 (280)
348 PRK05650 short chain dehydroge 84.6 15 0.00033 31.8 11.0 76 146-222 2-86 (270)
349 PRK07576 short chain dehydroge 84.6 9.7 0.00021 33.1 9.7 79 143-222 8-95 (264)
350 KOG0821 Predicted ribosomal RN 84.5 7.1 0.00015 34.2 8.4 62 141-204 48-110 (326)
351 KOG1201 Hydroxysteroid 17-beta 84.4 15 0.00033 33.3 10.8 77 143-222 37-123 (300)
352 PRK07326 short chain dehydroge 84.1 7.5 0.00016 32.8 8.6 79 143-222 5-91 (237)
353 PRK08324 short chain dehydroge 84.0 8.3 0.00018 38.9 10.1 79 143-222 421-507 (681)
354 COG3510 CmcI Cephalosporin hyd 83.9 4.5 9.7E-05 34.6 6.7 61 141-205 68-131 (237)
355 PRK08589 short chain dehydroge 83.7 11 0.00023 33.0 9.7 78 143-222 5-91 (272)
356 PRK09496 trkA potassium transp 83.6 10 0.00022 35.8 10.1 74 146-225 2-77 (453)
357 PRK07677 short chain dehydroge 83.3 15 0.00031 31.6 10.2 77 145-222 2-87 (252)
358 KOG2782 Putative SAM dependent 83.1 0.71 1.5E-05 40.1 1.7 93 125-222 28-127 (303)
359 PRK07109 short chain dehydroge 83.1 13 0.00029 33.8 10.3 79 143-222 7-94 (334)
360 COG0863 DNA modification methy 82.6 2.4 5.3E-05 37.6 5.1 46 140-188 219-264 (302)
361 TIGR00853 pts-lac PTS system, 82.6 2.7 5.9E-05 31.4 4.6 55 146-222 5-59 (95)
362 PRK12937 short chain dehydroge 82.6 19 0.00042 30.4 10.6 79 143-222 4-92 (245)
363 PRK12826 3-ketoacyl-(acyl-carr 82.5 22 0.00048 30.0 11.0 79 143-222 5-92 (251)
364 PRK13394 3-hydroxybutyrate deh 82.5 21 0.00046 30.4 10.9 78 144-222 7-93 (262)
365 PRK07102 short chain dehydroge 82.5 17 0.00036 30.9 10.2 77 145-222 2-85 (243)
366 PRK06182 short chain dehydroge 82.3 18 0.00038 31.5 10.4 73 144-222 3-83 (273)
367 PRK07024 short chain dehydroge 82.3 6.5 0.00014 33.9 7.6 77 145-222 3-87 (257)
368 PRK08217 fabG 3-ketoacyl-(acyl 82.2 7.4 0.00016 33.0 7.9 79 143-222 4-91 (253)
369 PRK08643 acetoin reductase; Va 82.1 25 0.00054 30.1 11.2 77 145-222 3-88 (256)
370 PRK08862 short chain dehydroge 82.1 28 0.00061 29.7 11.4 79 143-221 4-91 (227)
371 PRK07523 gluconate 5-dehydroge 82.0 19 0.00042 30.8 10.5 79 143-222 9-96 (255)
372 PRK08265 short chain dehydroge 81.9 13 0.00028 32.2 9.4 77 143-222 5-89 (261)
373 PRK06180 short chain dehydroge 81.9 16 0.00034 32.0 10.0 76 144-222 4-87 (277)
374 PRK07231 fabG 3-ketoacyl-(acyl 81.9 8.3 0.00018 32.7 8.0 78 144-222 5-90 (251)
375 PRK07062 short chain dehydroge 81.8 12 0.00027 32.2 9.2 79 143-222 7-96 (265)
376 KOG2920 Predicted methyltransf 81.7 1.8 4E-05 38.8 3.9 38 142-181 115-152 (282)
377 PRK03562 glutathione-regulated 81.7 5.7 0.00012 39.8 7.8 87 145-238 401-491 (621)
378 PRK07533 enoyl-(acyl carrier p 81.4 9 0.0002 33.2 8.2 80 143-222 9-97 (258)
379 PRK06935 2-deoxy-D-gluconate 3 81.0 32 0.0007 29.5 11.6 78 143-222 14-100 (258)
380 PRK06701 short chain dehydroge 81.0 16 0.00035 32.4 9.8 79 143-222 45-133 (290)
381 PRK06914 short chain dehydroge 80.9 25 0.00054 30.5 10.9 78 144-222 3-90 (280)
382 COG5459 Predicted rRNA methyla 80.8 1.2 2.5E-05 41.4 2.3 38 141-179 112-149 (484)
383 PRK06125 short chain dehydroge 80.6 30 0.00064 29.7 11.2 79 143-222 6-90 (259)
384 PRK09590 celB cellobiose phosp 80.6 3.8 8.2E-05 31.2 4.8 56 146-221 3-58 (104)
385 PF01234 NNMT_PNMT_TEMT: NNMT/ 80.4 1.7 3.6E-05 38.7 3.1 79 142-222 55-167 (256)
386 PLN02427 UDP-apiose/xylose syn 80.3 5.2 0.00011 37.1 6.6 77 145-222 15-95 (386)
387 PF05050 Methyltransf_21: Meth 80.3 4.4 9.5E-05 32.2 5.4 39 149-187 1-42 (167)
388 COG2961 ComJ Protein involved 80.2 8.7 0.00019 34.1 7.4 79 140-222 86-165 (279)
389 PRK09880 L-idonate 5-dehydroge 80.0 24 0.00052 32.0 10.8 42 138-180 164-206 (343)
390 PRK05866 short chain dehydroge 80.0 11 0.00023 33.6 8.4 78 144-222 40-126 (293)
391 PRK07890 short chain dehydroge 80.0 16 0.00034 31.3 9.2 79 143-222 4-91 (258)
392 PRK08628 short chain dehydroge 80.0 18 0.00039 31.0 9.6 79 143-222 6-92 (258)
393 PRK03659 glutathione-regulated 80.0 6.4 0.00014 39.2 7.4 82 152-238 406-491 (601)
394 PRK06500 short chain dehydroge 80.0 22 0.00048 30.1 10.1 77 143-222 5-89 (249)
395 PRK07791 short chain dehydroge 79.9 38 0.00081 29.9 11.8 81 142-222 4-101 (286)
396 PRK09242 tropinone reductase; 79.8 23 0.00049 30.4 10.2 79 143-222 8-97 (257)
397 PRK08277 D-mannonate oxidoredu 78.6 14 0.0003 32.2 8.5 79 143-222 9-96 (278)
398 PRK05876 short chain dehydroge 78.6 28 0.0006 30.6 10.5 79 143-222 5-92 (275)
399 TIGR02415 23BDH acetoin reduct 78.3 28 0.0006 29.6 10.2 76 146-222 2-86 (254)
400 KOG3201 Uncharacterized conser 78.3 1.1 2.3E-05 37.3 1.1 59 125-186 14-72 (201)
401 PRK07814 short chain dehydroge 78.1 41 0.00089 29.0 11.3 79 143-222 9-96 (263)
402 PRK12823 benD 1,6-dihydroxycyc 78.0 14 0.0003 31.7 8.3 78 143-222 7-93 (260)
403 PRK05993 short chain dehydroge 78.0 15 0.00032 32.2 8.6 74 143-222 3-85 (277)
404 PRK07478 short chain dehydroge 78.0 16 0.00034 31.3 8.6 78 144-222 6-92 (254)
405 PRK07825 short chain dehydroge 77.7 33 0.00071 29.7 10.6 75 144-222 5-87 (273)
406 PRK05875 short chain dehydroge 77.5 15 0.00032 32.0 8.3 79 143-222 6-95 (276)
407 PRK06113 7-alpha-hydroxysteroi 77.5 39 0.00084 28.9 10.9 79 143-222 10-97 (255)
408 cd01065 NAD_bind_Shikimate_DH 77.3 19 0.0004 28.5 8.2 73 142-223 17-91 (155)
409 PF01073 3Beta_HSD: 3-beta hyd 77.1 2.4 5.3E-05 37.8 3.2 69 152-222 4-75 (280)
410 PRK06841 short chain dehydroge 77.0 33 0.00072 29.2 10.4 77 143-222 14-98 (255)
411 PLN02657 3,8-divinyl protochlo 76.8 8.3 0.00018 36.1 6.9 81 141-222 57-145 (390)
412 PRK06114 short chain dehydroge 76.7 32 0.00069 29.5 10.2 79 143-222 7-95 (254)
413 PLN00198 anthocyanidin reducta 76.7 12 0.00026 33.8 7.8 79 143-222 8-89 (338)
414 PRK09186 flagellin modificatio 76.7 46 0.001 28.3 11.3 79 143-222 3-92 (256)
415 PRK07453 protochlorophyllide o 76.2 14 0.00031 33.1 8.1 79 143-222 5-92 (322)
416 PRK07074 short chain dehydroge 75.7 40 0.00086 28.8 10.5 76 145-222 3-86 (257)
417 PRK05717 oxidoreductase; Valid 75.7 28 0.00061 29.8 9.6 77 143-222 9-93 (255)
418 PRK07035 short chain dehydroge 75.6 19 0.00042 30.7 8.4 79 144-222 8-94 (252)
419 PRK12384 sorbitol-6-phosphate 75.2 39 0.00084 28.9 10.3 77 145-222 3-90 (259)
420 PRK08085 gluconate 5-dehydroge 74.7 43 0.00093 28.6 10.4 79 143-222 8-95 (254)
421 PRK05565 fabG 3-ketoacyl-(acyl 74.7 50 0.0011 27.7 10.7 77 145-222 6-92 (247)
422 PRK12828 short chain dehydroge 74.6 49 0.0011 27.6 11.2 78 143-222 6-91 (239)
423 PRK11524 putative methyltransf 74.6 1.3 2.8E-05 39.7 0.8 30 193-223 8-37 (284)
424 PRK08278 short chain dehydroge 74.6 45 0.00098 29.0 10.7 79 143-222 5-99 (273)
425 KOG3350 Uncharacterized conser 74.4 10 0.00023 31.9 6.0 83 126-222 61-144 (217)
426 PRK06198 short chain dehydroge 74.4 47 0.001 28.3 10.6 79 143-222 5-93 (260)
427 PRK15181 Vi polysaccharide bio 74.3 6.1 0.00013 36.1 5.2 78 144-222 15-99 (348)
428 KOG1209 1-Acyl dihydroxyaceton 74.1 32 0.00068 30.2 9.0 74 144-222 7-90 (289)
429 TIGR03693 ocin_ThiF_like putat 73.8 20 0.00043 35.9 8.7 85 141-225 126-216 (637)
430 PRK05855 short chain dehydroge 73.8 25 0.00053 33.9 9.5 78 144-222 315-401 (582)
431 PRK07831 short chain dehydroge 73.7 57 0.0012 28.0 11.9 81 141-222 14-106 (262)
432 PRK08219 short chain dehydroge 73.7 30 0.00065 28.7 9.0 74 145-222 4-80 (227)
433 PF02086 MethyltransfD12: D12 73.2 3.2 6.9E-05 36.1 2.9 48 126-180 6-54 (260)
434 PRK07424 bifunctional sterol d 73.1 47 0.001 31.5 10.9 77 143-222 177-254 (406)
435 PRK07806 short chain dehydroge 73.0 27 0.00059 29.6 8.7 79 143-222 5-93 (248)
436 KOG2912 Predicted DNA methylas 72.9 10 0.00022 35.0 6.0 102 122-224 79-189 (419)
437 PRK06200 2,3-dihydroxy-2,3-dih 72.9 22 0.00047 30.7 8.2 77 143-222 5-89 (263)
438 PRK06720 hypothetical protein; 72.9 45 0.00098 27.3 9.6 80 143-222 15-102 (169)
439 PRK12481 2-deoxy-D-gluconate 3 72.9 44 0.00096 28.6 10.1 77 143-222 7-92 (251)
440 PRK08263 short chain dehydroge 72.6 44 0.00096 29.0 10.1 75 145-222 4-86 (275)
441 PRK07774 short chain dehydroge 72.6 27 0.00059 29.6 8.6 79 143-222 5-92 (250)
442 PRK06123 short chain dehydroge 72.6 56 0.0012 27.6 10.6 77 145-222 3-89 (248)
443 PRK05854 short chain dehydroge 72.4 19 0.00041 32.4 7.9 79 143-222 13-102 (313)
444 PLN02989 cinnamyl-alcohol dehy 72.3 19 0.00042 32.1 7.9 79 143-222 4-86 (325)
445 PRK08264 short chain dehydroge 72.0 33 0.00072 28.8 9.0 73 143-222 5-82 (238)
446 PRK12746 short chain dehydroge 71.9 55 0.0012 27.8 10.4 78 144-222 6-99 (254)
447 PRK10310 PTS system galactitol 71.6 11 0.00025 27.9 5.2 13 150-162 7-19 (94)
448 PRK08063 enoyl-(acyl carrier p 71.6 52 0.0011 27.8 10.2 79 143-222 3-91 (250)
449 PRK08690 enoyl-(acyl carrier p 71.5 23 0.00051 30.7 8.1 80 143-222 5-93 (261)
450 PF00106 adh_short: short chai 71.5 18 0.00038 28.6 6.8 75 146-222 2-89 (167)
451 PRK06077 fabG 3-ketoacyl-(acyl 71.3 61 0.0013 27.4 10.5 78 144-222 6-93 (252)
452 PF03686 UPF0146: Uncharacteri 71.3 15 0.00032 29.1 5.9 70 143-225 13-82 (127)
453 cd05565 PTS_IIB_lactose PTS_II 71.2 6.3 0.00014 29.8 3.7 54 147-222 3-56 (99)
454 PRK05884 short chain dehydroge 71.2 33 0.00071 29.0 8.7 72 146-222 2-78 (223)
455 PLN02819 lysine-ketoglutarate 71.2 35 0.00076 36.4 10.3 76 143-223 568-658 (1042)
456 cd08283 FDH_like_1 Glutathione 71.2 12 0.00025 34.8 6.4 40 140-180 181-221 (386)
457 PF13460 NAD_binding_10: NADH( 70.9 14 0.0003 29.9 6.1 64 153-223 6-70 (183)
458 PRK05599 hypothetical protein; 70.6 42 0.00091 28.7 9.4 76 146-222 2-86 (246)
459 PRK07792 fabG 3-ketoacyl-(acyl 70.5 79 0.0017 28.2 11.8 79 143-222 11-98 (306)
460 PRK10538 malonic semialdehyde 70.4 67 0.0015 27.3 10.7 74 146-222 2-83 (248)
461 PRK12748 3-ketoacyl-(acyl-carr 69.9 64 0.0014 27.6 10.4 79 144-222 5-104 (256)
462 PRK06128 oxidoreductase; Provi 69.8 50 0.0011 29.2 10.0 79 143-222 54-143 (300)
463 COG1255 Uncharacterized protei 69.6 23 0.0005 27.7 6.5 71 146-229 16-86 (129)
464 PRK08251 short chain dehydroge 69.4 32 0.0007 29.1 8.4 77 145-222 3-90 (248)
465 PF02719 Polysacc_synt_2: Poly 69.3 22 0.00048 32.2 7.4 71 152-222 5-86 (293)
466 CHL00194 ycf39 Ycf39; Provisio 69.2 19 0.00041 32.3 7.1 70 146-221 2-72 (317)
467 PRK12824 acetoacetyl-CoA reduc 69.1 44 0.00096 28.1 9.1 76 146-222 4-89 (245)
468 PRK07067 sorbitol dehydrogenas 68.9 73 0.0016 27.2 11.3 76 144-222 6-89 (257)
469 PLN00141 Tic62-NAD(P)-related 68.8 26 0.00057 30.1 7.7 75 144-222 17-94 (251)
470 PRK06057 short chain dehydroge 68.6 23 0.0005 30.3 7.3 75 143-222 6-88 (255)
471 PRK11908 NAD-dependent epimera 68.6 21 0.00045 32.4 7.3 70 146-220 3-75 (347)
472 PRK06196 oxidoreductase; Provi 68.5 33 0.00072 30.6 8.6 76 143-222 25-108 (315)
473 PF11899 DUF3419: Protein of u 68.4 12 0.00027 35.1 5.8 36 140-178 32-67 (380)
474 PRK06197 short chain dehydroge 68.3 29 0.00064 30.8 8.2 79 143-222 15-104 (306)
475 cd05564 PTS_IIB_chitobiose_lic 68.2 8.6 0.00019 28.6 3.9 52 149-221 3-54 (96)
476 PF04378 RsmJ: Ribosomal RNA s 68.1 3.6 7.9E-05 36.3 2.1 72 148-222 62-134 (245)
477 PRK08993 2-deoxy-D-gluconate 3 68.1 69 0.0015 27.4 10.2 77 143-222 9-94 (253)
478 PRK06997 enoyl-(acyl carrier p 68.0 25 0.00055 30.5 7.5 80 143-222 5-93 (260)
479 cd01078 NAD_bind_H4MPT_DH NADP 67.9 40 0.00087 27.9 8.4 79 143-222 27-106 (194)
480 PRK06484 short chain dehydroge 67.8 44 0.00095 32.1 9.8 78 142-222 267-352 (520)
481 TIGR02622 CDP_4_6_dhtase CDP-g 67.6 22 0.00047 32.3 7.3 78 144-222 4-84 (349)
482 PRK05693 short chain dehydroge 67.5 51 0.0011 28.5 9.4 71 146-222 3-81 (274)
483 PRK06179 short chain dehydroge 67.4 43 0.00094 28.8 8.9 71 144-222 4-82 (270)
484 PRK07985 oxidoreductase; Provi 67.2 47 0.001 29.5 9.2 79 143-222 48-137 (294)
485 PRK12367 short chain dehydroge 67.1 83 0.0018 27.2 10.7 75 144-222 14-88 (245)
486 COG0451 WcaG Nucleoside-diphos 67.0 10 0.00022 33.4 4.8 69 147-222 3-73 (314)
487 TIGR03325 BphB_TodD cis-2,3-di 66.7 28 0.00062 29.9 7.6 77 143-222 4-88 (262)
488 PRK08213 gluconate 5-dehydroge 66.6 82 0.0018 26.9 12.0 79 143-222 11-98 (259)
489 PRK12744 short chain dehydroge 66.6 69 0.0015 27.3 10.0 79 143-222 7-98 (257)
490 COG4221 Short-chain alcohol de 66.4 52 0.0011 29.0 8.9 78 144-222 6-90 (246)
491 PRK08945 putative oxoacyl-(acy 66.1 55 0.0012 27.7 9.2 81 141-222 9-101 (247)
492 PRK12747 short chain dehydroge 65.8 83 0.0018 26.7 10.5 78 144-222 4-97 (252)
493 TIGR02632 RhaD_aldol-ADH rhamn 65.6 72 0.0016 32.3 11.1 79 143-222 413-502 (676)
494 PRK08220 2,3-dihydroxybenzoate 65.5 61 0.0013 27.4 9.3 101 143-251 7-123 (252)
495 PLN02650 dihydroflavonol-4-red 65.3 28 0.0006 31.6 7.5 82 141-222 1-86 (351)
496 PRK06603 enoyl-(acyl carrier p 64.9 41 0.00088 29.1 8.2 79 143-221 7-94 (260)
497 PRK06482 short chain dehydroge 64.9 75 0.0016 27.5 9.9 105 145-251 3-123 (276)
498 COG1087 GalE UDP-glucose 4-epi 64.3 13 0.00028 34.0 4.8 108 150-261 5-117 (329)
499 PRK08159 enoyl-(acyl carrier p 64.3 45 0.00097 29.2 8.4 79 143-221 9-96 (272)
500 PRK12936 3-ketoacyl-(acyl-carr 64.3 85 0.0018 26.3 11.1 117 143-261 5-140 (245)
No 1
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=100.00 E-value=1e-54 Score=369.37 Aligned_cols=180 Identities=83% Similarity=1.268 Sum_probs=172.3
Q ss_pred CCCCCCCCCCCceeeecceeeceEEEecCCcccccccccCCCceeeeeeEEEEecCCCceecceEeCCcchHHHHHHHhc
Q 024665 56 RGRGGGGMKGGSKVVVEPHRHEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGG 135 (264)
Q Consensus 56 ~~~~~~~~~~g~k~~i~~~~~~g~~~~~~~~d~l~~~~~~~g~~vy~e~~~~v~~~~~~~~~yr~~~p~~s~l~~~il~~ 135 (264)
+++..++.++|+||+||||+|+|||++|+|+|+|+|+|++|++++|+|++++++.+++ ++|||+||||+|+|++.|+..
T Consensus 70 ~~~~~~g~~gG~~v~vEPHRh~GVfi~rgkeDaLvTkNlvpge~vYgEkRisv~~~~~-kvEyRVWnPfrSKLAA~I~gG 148 (317)
T KOG1596|consen 70 RGGVAGGIKGGSKVLVEPHRHAGVFIARGKEDALVTKNLVPGESVYGEKRISVENEDG-KVEYRVWNPFRSKLAAGILGG 148 (317)
T ss_pred cccccccccCCceEEeccccccceEEEcCchhheeecccCCcccccCceEEEeecCCC-cEEEEEeChHHHHHHHHhhcC
Confidence 3333456789999999999999999999999999999999999999999999998754 999999999999999999999
Q ss_pred ccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCcc
Q 024665 136 VDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVD 215 (264)
Q Consensus 136 l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD 215 (264)
+++++++|+++||+||+++|+..+|+++.++|++.|||||+|+++.++|+++|++++||.+|++|++++.+|+|+..++|
T Consensus 149 vdnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtNiiPIiEDArhP~KYRmlVgmVD 228 (317)
T KOG1596|consen 149 VDNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTNIIPIIEDARHPAKYRMLVGMVD 228 (317)
T ss_pred ccceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccCCceeeeccCCCchheeeeeeeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCchHHHHHHHHHhC
Q 024665 216 VIFSDVAQPDQVCFLCLILFQ 236 (264)
Q Consensus 216 ~V~~d~p~~~~~~~~~~~~l~ 236 (264)
+||+|+++|+|+++++||+.+
T Consensus 229 vIFaDvaqpdq~RivaLNA~~ 249 (317)
T KOG1596|consen 229 VIFADVAQPDQARIVALNAQY 249 (317)
T ss_pred EEeccCCCchhhhhhhhhhhh
Confidence 999999999999999999864
No 2
>PTZ00146 fibrillarin; Provisional
Probab=100.00 E-value=4.8e-46 Score=330.87 Aligned_cols=172 Identities=74% Similarity=1.153 Sum_probs=156.6
Q ss_pred ceeeecceeeceEEEecCCcccccccccCCCceeeeeeEEEEecCCC-ceecceEeCCcchHHHHHHHhcccccCCCCCC
Q 024665 67 SKVVVEPHRHEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDG-TKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGA 145 (264)
Q Consensus 67 ~k~~i~~~~~~g~~~~~~~~d~l~~~~~~~g~~vy~e~~~~v~~~~~-~~~~yr~~~p~~s~l~~~il~~l~~~~l~~g~ 145 (264)
.+|+||||.|+|+|++++++|.|+|+|++|++++|+|+++.++.+++ +.++||+|+||+|||++.|+..+++++++|++
T Consensus 55 ~~~~~~~~~~~gv~~~~~~~~~l~t~n~~pg~~vygek~~~~~~~~~~~~~eyR~w~p~rSKlaa~i~~g~~~l~IkpG~ 134 (293)
T PTZ00146 55 GKVIVVPHRFPGVFIAKGKSDALVTKNMVPGESVYGEKRISVEDAEGGEKIEYRVWNPFRSKLAAAIIGGVANIPIKPGS 134 (293)
T ss_pred CceEEeeeeecCEEEeecCCceeEeecCCCCcccccceEEeeccCCCCCcceeeeeCCcccHHHHHHHCCcceeccCCCC
Confidence 79999999999999999988999999999999999999999986543 68899999999999999999999999999999
Q ss_pred EEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEcCCCch
Q 024665 146 RVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPD 225 (264)
Q Consensus 146 ~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p~~~ 225 (264)
+|||||||||++++++|++++++++|||||+++++.+++++.++.++||.+++.|++++..|+++.++||+||+|+++||
T Consensus 135 ~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDvV~~Dva~pd 214 (293)
T PTZ00146 135 KVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDVIFADVAQPD 214 (293)
T ss_pred EEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCEEEEeCCCcc
Confidence 99999999999999999999989999999999999999999998888999999999886666666679999999999999
Q ss_pred HHHHHHHH---HhCCC
Q 024665 226 QVCFLCLI---LFQPI 238 (264)
Q Consensus 226 ~~~~~~~~---~l~~~ 238 (264)
+..+..++ .|+|.
T Consensus 215 q~~il~~na~r~LKpG 230 (293)
T PTZ00146 215 QARIVALNAQYFLKNG 230 (293)
T ss_pred hHHHHHHHHHHhccCC
Confidence 87766654 34555
No 3
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=100.00 E-value=1.7e-38 Score=270.01 Aligned_cols=164 Identities=76% Similarity=1.157 Sum_probs=140.8
Q ss_pred ecce-eeceEEEecCCcccccccccCCCceeeeeeEEEEecCCCceecceEeCCcchHHHHHHHhcccccCCCCCCEEEE
Q 024665 71 VEPH-RHEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLY 149 (264)
Q Consensus 71 i~~~-~~~g~~~~~~~~d~l~~~~~~~g~~vy~e~~~~v~~~~~~~~~yr~~~p~~s~l~~~il~~l~~~~l~~g~~VLD 149 (264)
|||| +|+|+|++++++|.|+|+|++||+++|+|+++.++.. +++.+||+|+||+|||++.|+..++.++++||++||+
T Consensus 1 i~~h~~~~gvy~~~~~~~~l~T~n~~pg~~vYGEk~i~~~~~-~~~~eYR~W~P~RSKLaAai~~Gl~~~~ik~gskVLY 79 (229)
T PF01269_consen 1 IEPHERFEGVYIARGKGDALATKNLVPGESVYGEKRISVEGE-GKKVEYRVWNPFRSKLAAAILKGLENIPIKPGSKVLY 79 (229)
T ss_dssp -EEEESSTTEEEEETTSTEEEEE-SSTT--SSSSEEEEETTE----EEEEEE-TTT-HHHHHHHTT-S--S--TT-EEEE
T ss_pred CcceeeecCEEEEecCCCeEEEecCCCCCcccCceeEeecCC-CCccceeecCchhhHHHHHHHcCccccCCCCCCEEEE
Confidence 6899 9999999999999999999999999999999998764 5899999999999999999999999999999999999
Q ss_pred EcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEcCCCchHHHH
Q 024665 150 LGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQVCF 229 (264)
Q Consensus 150 lG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p~~~~~~~ 229 (264)
||+++|++.+|+|+.++++|.|||||+|+++.+++++.+++++||.+|.+|++.+.+|+++.+++|+|++|+++|+|+.+
T Consensus 80 LGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P~~Y~~lv~~VDvI~~DVaQp~Qa~I 159 (229)
T PF01269_consen 80 LGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHPEKYRMLVEMVDVIFQDVAQPDQARI 159 (229)
T ss_dssp ETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSGGGGTTTS--EEEEEEE-SSTTHHHH
T ss_pred ecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeeccCCChHHhhcccccccEEEecCCChHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHh
Q 024665 230 LCLILF 235 (264)
Q Consensus 230 ~~~~~l 235 (264)
..+|+.
T Consensus 160 ~~~Na~ 165 (229)
T PF01269_consen 160 AALNAR 165 (229)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999994
No 4
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1e-34 Score=241.91 Aligned_cols=163 Identities=63% Similarity=0.926 Sum_probs=154.7
Q ss_pred ceeeecce-eeceEEEecCCc--ccccccccCCCceeeeeeEEEEecCCCceecceEeCCcchHHHHHHHhcccccCCCC
Q 024665 67 SKVVVEPH-RHEGVFIAKGKE--DALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKP 143 (264)
Q Consensus 67 ~k~~i~~~-~~~g~~~~~~~~--d~l~~~~~~~g~~vy~e~~~~v~~~~~~~~~yr~~~p~~s~l~~~il~~l~~~~l~~ 143 (264)
.++.|+|| .++|+|+.+.++ +.|+|+|++||..+|+|+.+.+.++ +||.|+|++|+|++.|++.|+++.+++
T Consensus 2 ~~~~v~~~~~~~gvy~~~~~dg~~~l~T~nl~pg~~VYGE~ii~~~~~-----eYR~Wnp~RSKLaAaIl~Gl~~~pi~~ 76 (231)
T COG1889 2 AMVEVKPHERFEGVYIVRFKDGSDRLATKNLVPGERVYGERIIKVEGE-----EYREWNPRRSKLAAAILKGLKNFPIKE 76 (231)
T ss_pred ceeecccccccCCeEEEEcccccceeeeecCCCCccccCceeEEecCc-----ceeeeCcchhHHHHHHHcCcccCCcCC
Confidence 46789999 699999988654 7899999999999999999999885 899999999999999999999999999
Q ss_pred CCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEcCCC
Q 024665 144 GARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQ 223 (264)
Q Consensus 144 g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p~ 223 (264)
+++||+||+++|++.+|+|+.++ .+.|||||+|+++.++++..+.+++||.+|.+||+.+.+|+++.+++|+|+.|++|
T Consensus 77 g~~VLYLGAasGTTvSHVSDIv~-~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~P~~Y~~~Ve~VDviy~DVAQ 155 (231)
T COG1889 77 GSKVLYLGAASGTTVSHVSDIVG-EGRIYAVEFSPRPMRELLDVAEKRPNIIPILEDARKPEKYRHLVEKVDVIYQDVAQ 155 (231)
T ss_pred CCEEEEeeccCCCcHhHHHhccC-CCcEEEEEecchhHHHHHHHHHhCCCceeeecccCCcHHhhhhcccccEEEEecCC
Confidence 99999999999999999999997 89999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHh
Q 024665 224 PDQVCFLCLILF 235 (264)
Q Consensus 224 ~~~~~~~~~~~l 235 (264)
|+|+.+.+.|+.
T Consensus 156 p~Qa~I~~~Na~ 167 (231)
T COG1889 156 PNQAEILADNAE 167 (231)
T ss_pred chHHHHHHHHHH
Confidence 999999999864
No 5
>PRK04266 fibrillarin; Provisional
Probab=99.92 E-value=6.5e-24 Score=184.51 Aligned_cols=161 Identities=53% Similarity=0.799 Sum_probs=132.6
Q ss_pred cceeeceEEEecCCcc--cccccccCCCceeeeeeEEEEecCCCceecceEeCCcchHHHHHHHhcccccCCCCCCEEEE
Q 024665 72 EPHRHEGVFIAKGKED--ALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLY 149 (264)
Q Consensus 72 ~~~~~~g~~~~~~~~d--~l~~~~~~~g~~vy~e~~~~v~~~~~~~~~yr~~~p~~s~l~~~il~~l~~~~l~~g~~VLD 149 (264)
.||+|+|+|++++++| .|+|+|++||+.+|++....... ..|++|+|+++++++.++..++.+.++|+++|||
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-----~~~~~~~~~r~~~~~~ll~~~~~l~i~~g~~VlD 78 (226)
T PRK04266 4 KKEIFEGVYEVEFEDGSKRLATKNLVPGKRVYGERLIKWEG-----VEYREWNPRRSKLAAAILKGLKNFPIKKGSKVLY 78 (226)
T ss_pred cccccCCEEEEecCCCcceEeeecCCCCCCCCCceEEecCC-----cEEEEECCCccchHHHHHhhHhhCCCCCCCEEEE
Confidence 4899999999997544 49999999999999987655433 4799999999999999998665567999999999
Q ss_pred EcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEcCCCchHH--
Q 024665 150 LGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQV-- 227 (264)
Q Consensus 150 lG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p~~~~~-- 227 (264)
+|||+|.+++++++.+. .++|||+|+++.|++.+.+.+....||.++++|+.++..+..+.++||+|++|++.|++.
T Consensus 79 ~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~i~~d~~~p~~~~~ 157 (226)
T PRK04266 79 LGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDVIYQDVAQPNQAEI 157 (226)
T ss_pred EccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCEEEECCCChhHHHH
Confidence 99999999999999985 779999999999988888777767899999999987432223446799999999987754
Q ss_pred -HHHHHHHhCCC
Q 024665 228 -CFLCLILFQPI 238 (264)
Q Consensus 228 -~~~~~~~l~~~ 238 (264)
.......++|+
T Consensus 158 ~L~~~~r~LKpG 169 (226)
T PRK04266 158 AIDNAEFFLKDG 169 (226)
T ss_pred HHHHHHHhcCCC
Confidence 33445566776
No 6
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.72 E-value=1.8e-16 Score=137.66 Aligned_cols=157 Identities=22% Similarity=0.284 Sum_probs=127.7
Q ss_pred cccccccccCCCceeeeee--EEEEecCCCceecceEeCCcc-----hHHHHHHHhcccccCCCCCCEEEEEcccCChHH
Q 024665 86 EDALVTKNLVAGEAVYNEK--RISVQNEDGTKVEYRIWNPFR-----SKLAAAVLGGVDNIWIKPGARVLYLGAASGTTV 158 (264)
Q Consensus 86 ~d~l~~~~~~~g~~vy~e~--~~~v~~~~~~~~~yr~~~p~~-----s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s 158 (264)
.+.++.++ +|+.+-.+. .+++-.| +..+|....|++ ++.++.|+..+. +.|+++|||.|+|||.+|
T Consensus 37 ~~~vigk~--~G~~i~s~~G~~f~vl~p--~~~d~~~~~~R~tQiIyPKD~~~I~~~~g---i~pg~rVlEAGtGSG~lt 109 (256)
T COG2519 37 HDEVIGKP--YGEVIKSHLGVKFYVLKP--TPEDYLLSMKRRTQIIYPKDAGYIVARLG---ISPGSRVLEAGTGSGALT 109 (256)
T ss_pred hhhhcCCC--CCceEEeeCCceEEEeCC--CHHHHHHhCcCCCceecCCCHHHHHHHcC---CCCCCEEEEcccCchHHH
Confidence 46788877 677666442 5777777 777777666665 678888886666 999999999999999999
Q ss_pred HHHHHHhCCCCEEEEEeCChHHHHHHHHHhh---cCCCeEEEEcCCCCchhhcccCCCccEEEEcCCCchHHHHHHHHHh
Q 024665 159 SHVSDIVGPNGVVYAVEFSHRSGRDLVNMAK---KRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQVCFLCLILF 235 (264)
Q Consensus 159 ~~la~~~~~~g~V~avD~s~~~~~~l~~~a~---~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p~~~~~~~~~~~~l 235 (264)
..||..+++.|+|+.+|+.++.++.+.++.. ..++|++...|+.+... .+.||+||+|+|.||.+.....+++
T Consensus 110 ~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~----~~~vDav~LDmp~PW~~le~~~~~L 185 (256)
T COG2519 110 AYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGID----EEDVDAVFLDLPDPWNVLEHVSDAL 185 (256)
T ss_pred HHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccc----ccccCEEEEcCCChHHHHHHHHHHh
Confidence 9999999999999999999877554444333 23359999999988652 3499999999999999999999999
Q ss_pred CCC--------cHHHHHHHHHHhhcc
Q 024665 236 QPI--------VINNLQSVNNETKGG 253 (264)
Q Consensus 236 ~~~--------~~~~l~~~~~~Lk~g 253 (264)
+|+ +.+|++.++++|+..
T Consensus 186 kpgg~~~~y~P~veQv~kt~~~l~~~ 211 (256)
T COG2519 186 KPGGVVVVYSPTVEQVEKTVEALRER 211 (256)
T ss_pred CCCcEEEEEcCCHHHHHHHHHHHHhc
Confidence 998 899999999999843
No 7
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.69 E-value=1.5e-16 Score=139.53 Aligned_cols=139 Identities=25% Similarity=0.303 Sum_probs=101.4
Q ss_pred ceecceEeCCcc-----hHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHH---H
Q 024665 114 TKVEYRIWNPFR-----SKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDL---V 185 (264)
Q Consensus 114 ~~~~yr~~~p~~-----s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l---~ 185 (264)
|..+|....|++ ++.+..|+..++ +.||++|||.|+|||.+|..||..++|.|+||.+|+.++.++.+ .
T Consensus 9 t~e~~~~~l~rrtQIiYpkD~~~I~~~l~---i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~ 85 (247)
T PF08704_consen 9 TPELWTLSLPRRTQIIYPKDISYILMRLD---IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNF 85 (247)
T ss_dssp -HHHHHHTS-SSS----HHHHHHHHHHTT-----TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHH
T ss_pred hHHHHHHhccCCcceeeCchHHHHHHHcC---CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHH
Confidence 444454455554 578888887777 99999999999999999999999999999999999996554333 3
Q ss_pred HHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEcCCCchHHHHHHHHHh-CCC--------cHHHHHHHHHHhhcchh
Q 024665 186 NMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQVCFLCLILF-QPI--------VINNLQSVNNETKGGIF 255 (264)
Q Consensus 186 ~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p~~~~~~~~~~~~l-~~~--------~~~~l~~~~~~Lk~g~f 255 (264)
+......||++.+.|+.+......+...+|+||+|+|.||.+...+..++ +++ +++|++.++++|+...|
T Consensus 86 ~~~gl~~~v~~~~~Dv~~~g~~~~~~~~~DavfLDlp~Pw~~i~~~~~~L~~~gG~i~~fsP~ieQv~~~~~~L~~~gf 164 (247)
T PF08704_consen 86 ERHGLDDNVTVHHRDVCEEGFDEELESDFDAVFLDLPDPWEAIPHAKRALKKPGGRICCFSPCIEQVQKTVEALREHGF 164 (247)
T ss_dssp HHTTCCTTEEEEES-GGCG--STT-TTSEEEEEEESSSGGGGHHHHHHHE-EEEEEEEEEESSHHHHHHHHHHHHHTTE
T ss_pred HHcCCCCCceeEecceecccccccccCcccEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCCHHHHHHHHHHHHHCCC
Confidence 33334459999999996522111234689999999999999999999999 666 99999999999983234
No 8
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=99.64 E-value=5.3e-15 Score=129.01 Aligned_cols=159 Identities=20% Similarity=0.268 Sum_probs=129.0
Q ss_pred CcccccccccCCCceeeeee--EEEEecCCCceecceEeCCcc-----hHHHHHHHhcccccCCCCCCEEEEEcccCChH
Q 024665 85 KEDALVTKNLVAGEAVYNEK--RISVQNEDGTKVEYRIWNPFR-----SKLAAAVLGGVDNIWIKPGARVLYLGAASGTT 157 (264)
Q Consensus 85 ~~d~l~~~~~~~g~~vy~e~--~~~v~~~~~~~~~yr~~~p~~-----s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~ 157 (264)
+...++.+. +|+.+...+ .+++..| +...|.+..|++ +..++.|+..|+ +.||++||+.|+|||++
T Consensus 47 ~h~~iIGK~--~G~~v~sskG~~vylL~P--TpELWTl~LphRTQI~Yt~Dia~I~~~L~---i~PGsvV~EsGTGSGSl 119 (314)
T KOG2915|consen 47 PHSDIIGKP--YGSKVASSKGKFVYLLQP--TPELWTLALPHRTQILYTPDIAMILSMLE---IRPGSVVLESGTGSGSL 119 (314)
T ss_pred chhheecCC--ccceeeecCCcEEEEecC--ChHHhhhhccCcceEEecccHHHHHHHhc---CCCCCEEEecCCCcchH
Confidence 456788877 788877653 7788788 888998888888 567888888777 99999999999999999
Q ss_pred HHHHHHHhCCCCEEEEEeCChHHHHHHHHHhh---cCCCeEEEEcCCCCchhhcccCCCccEEEEcCCCchHHHHHHHHH
Q 024665 158 VSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAK---KRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQVCFLCLIL 234 (264)
Q Consensus 158 s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~---~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p~~~~~~~~~~~~ 234 (264)
+..+|..++|.|++|.+|+.+.-++.+.+.-+ ...||++++.|+...-. ......+|+||+|+|+||.+...+.+.
T Consensus 120 ShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF-~~ks~~aDaVFLDlPaPw~AiPha~~~ 198 (314)
T KOG2915|consen 120 SHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGF-LIKSLKADAVFLDLPAPWEAIPHAAKI 198 (314)
T ss_pred HHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCc-cccccccceEEEcCCChhhhhhhhHHH
Confidence 99999999999999999998644444444332 23599999999976431 111358999999999999999999998
Q ss_pred hCCC---------cHHHHHHHHHHhh
Q 024665 235 FQPI---------VINNLQSVNNETK 251 (264)
Q Consensus 235 l~~~---------~~~~l~~~~~~Lk 251 (264)
++.. +++|++..+++|.
T Consensus 199 lk~~g~r~csFSPCIEQvqrtce~l~ 224 (314)
T KOG2915|consen 199 LKDEGGRLCSFSPCIEQVQRTCEALR 224 (314)
T ss_pred hhhcCceEEeccHHHHHHHHHHHHHH
Confidence 7755 8899999999887
No 9
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.62 E-value=3.2e-15 Score=132.94 Aligned_cols=103 Identities=25% Similarity=0.266 Sum_probs=84.7
Q ss_pred eeeeeeEEEEecCCCceecceEeCCcchHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCCh
Q 024665 99 AVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSH 178 (264)
Q Consensus 99 ~vy~e~~~~v~~~~~~~~~yr~~~p~~s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~ 178 (264)
..|.++.+++|++ +|+++..++ .++|+++|||+|||+|.+|+++|+++.+.+.|+|+|+++
T Consensus 46 ~~~~~G~~~~qd~-------------~s~~~~~~l------~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~ 106 (264)
T TIGR00446 46 PEYLSGLYYIQEA-------------SSMIPPLAL------EPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSK 106 (264)
T ss_pred hhHhCCeEEEECH-------------HHHHHHHHh------CCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCH
Confidence 4688899999997 788777665 478999999999999999999999998788999999998
Q ss_pred HHHHHHHHHhhcC--CCeEEEEcCCCCchhhcccCCCccEEEEcCCC
Q 024665 179 RSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQ 223 (264)
Q Consensus 179 ~~~~~l~~~a~~~--~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p~ 223 (264)
.+++.+.++.... .||++++.|++++.. ....||+|++|+|+
T Consensus 107 ~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~---~~~~fD~Vl~D~Pc 150 (264)
T TIGR00446 107 SRTKVLIANINRCGVLNVAVTNFDGRVFGA---AVPKFDAILLDAPC 150 (264)
T ss_pred HHHHHHHHHHHHcCCCcEEEecCCHHHhhh---hccCCCEEEEcCCC
Confidence 8876665554433 389999999877542 23569999999993
No 10
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.57 E-value=2.1e-14 Score=135.97 Aligned_cols=104 Identities=25% Similarity=0.356 Sum_probs=85.5
Q ss_pred eeeeeeEEEEecCCCceecceEeCCcchHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCCh
Q 024665 99 AVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSH 178 (264)
Q Consensus 99 ~vy~e~~~~v~~~~~~~~~yr~~~p~~s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~ 178 (264)
..|.++.+++|++ +++++..++ .++++++|||+|||+|.+|+++++.+++.++|+|+|+++
T Consensus 212 ~~~~~G~~~~Qd~-------------~s~~~~~~l------~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~ 272 (431)
T PRK14903 212 RVIKDGLATVQGE-------------SSQIVPLLM------ELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISR 272 (431)
T ss_pred hHHHCCeEEEECH-------------HHHHHHHHh------CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCH
Confidence 4688889999987 777777665 488999999999999999999999998889999999998
Q ss_pred HHHHHHHHHhhcC--CCeEEEEcCCCCchhhcccCCCccEEEEcCCC
Q 024665 179 RSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQ 223 (264)
Q Consensus 179 ~~~~~l~~~a~~~--~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p~ 223 (264)
.+++.+.+++... .+|++++.|+.++..+ ..++||+|++|+|+
T Consensus 273 ~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~--~~~~fD~Vl~DaPC 317 (431)
T PRK14903 273 EKIQLVEKHAKRLKLSSIEIKIADAERLTEY--VQDTFDRILVDAPC 317 (431)
T ss_pred HHHHHHHHHHHHcCCCeEEEEECchhhhhhh--hhccCCEEEECCCC
Confidence 8876666555432 3789999999876532 34689999999995
No 11
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.54 E-value=4.7e-14 Score=126.33 Aligned_cols=159 Identities=18% Similarity=0.192 Sum_probs=107.3
Q ss_pred CCceeeecceeeceEEEecCCcccccccccCCCceeeeeeEEEEecCCCceecceEeCCcchHHHHHHHhcccccCCCCC
Q 024665 65 GGSKVVVEPHRHEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPG 144 (264)
Q Consensus 65 ~g~k~~i~~~~~~g~~~~~~~~d~l~~~~~~~g~~vy~e~~~~v~~~~~~~~~yr~~~p~~s~l~~~il~~l~~~~l~~g 144 (264)
=+++++|.|||++ |... ..+..+..+ ||. .|+++. +| ++.+|.+.+..+ ++++
T Consensus 111 ig~~f~I~Psw~~--~~~~-~~~~~i~lD--PGl-AFGTG~----Hp-------------TT~lcL~~Le~~----~~~g 163 (300)
T COG2264 111 IGERFVIVPSWRE--YPEP-SDELNIELD--PGL-AFGTGT----HP-------------TTSLCLEALEKL----LKKG 163 (300)
T ss_pred eeeeEEECCCCcc--CCCC-CCceEEEEc--ccc-ccCCCC----Ch-------------hHHHHHHHHHHh----hcCC
Confidence 4788999999987 2221 133445555 887 898883 77 888998888443 5699
Q ss_pred CEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeE----EEEcCCCCchhhcccCCCccEEEEc
Q 024665 145 ARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVI----PIIEDARHPAKYRMLVGMVDVIFSD 220 (264)
Q Consensus 145 ~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~----~i~~D~~~~~~~~~~~~~fD~V~~d 220 (264)
.+|||+|||||.+++.++.+ ...+|+|+|+++-+++...+++.++ +|. .-..+..+.. ...+||+|++|
T Consensus 164 ~~vlDvGcGSGILaIAa~kL--GA~~v~g~DiDp~AV~aa~eNa~~N-~v~~~~~~~~~~~~~~~----~~~~~DvIVAN 236 (300)
T COG2264 164 KTVLDVGCGSGILAIAAAKL--GAKKVVGVDIDPQAVEAARENARLN-GVELLVQAKGFLLLEVP----ENGPFDVIVAN 236 (300)
T ss_pred CEEEEecCChhHHHHHHHHc--CCceEEEecCCHHHHHHHHHHHHHc-CCchhhhcccccchhhc----ccCcccEEEeh
Confidence 99999999999999999987 5778999999987766555555443 333 2222222211 22589999999
Q ss_pred CC-Cch-HHHHHHHHHhCCC--------cHHHHHHHHHHhhcchhhh
Q 024665 221 VA-QPD-QVCFLCLILFQPI--------VINNLQSVNNETKGGIFEF 257 (264)
Q Consensus 221 ~p-~~~-~~~~~~~~~l~~~--------~~~~l~~~~~~Lk~g~f~~ 257 (264)
+- .|- +........++|. +..+...+.+++....|.+
T Consensus 237 ILA~vl~~La~~~~~~lkpgg~lIlSGIl~~q~~~V~~a~~~~gf~v 283 (300)
T COG2264 237 ILAEVLVELAPDIKRLLKPGGRLILSGILEDQAESVAEAYEQAGFEV 283 (300)
T ss_pred hhHHHHHHHHHHHHHHcCCCceEEEEeehHhHHHHHHHHHHhCCCeE
Confidence 86 222 2223334455665 7777888888876444443
No 12
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.53 E-value=5.8e-14 Score=133.16 Aligned_cols=106 Identities=25% Similarity=0.383 Sum_probs=84.7
Q ss_pred eeeeeeEEEEecCCCceecceEeCCcchHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCCh
Q 024665 99 AVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSH 178 (264)
Q Consensus 99 ~vy~e~~~~v~~~~~~~~~yr~~~p~~s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~ 178 (264)
..|.++.+++|++ ++.+++.++ .++++++|||+|||+|.+|+++++.+.+.++|+|+|+++
T Consensus 227 ~~f~~g~~~~qd~-------------~s~l~~~~l------~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~ 287 (434)
T PRK14901 227 PGYEEGWWTVQDR-------------SAQLVAPLL------DPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSA 287 (434)
T ss_pred hHHhCCeEEEECH-------------HHHHHHHHh------CCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCH
Confidence 3677888899987 777777665 478999999999999999999999988788999999998
Q ss_pred HHHHHHHHHhhcC--CCeEEEEcCCCCchhhc-ccCCCccEEEEcCCC
Q 024665 179 RSGRDLVNMAKKR--TNVIPIIEDARHPAKYR-MLVGMVDVIFSDVAQ 223 (264)
Q Consensus 179 ~~~~~l~~~a~~~--~nV~~i~~D~~~~~~~~-~~~~~fD~V~~d~p~ 223 (264)
.+++.+.++.... .||++++.|+++..... ...++||+|++|+|+
T Consensus 288 ~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~DaPC 335 (434)
T PRK14901 288 SRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRILLDAPC 335 (434)
T ss_pred HHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEEEEeCCC
Confidence 8876666555433 37999999998764210 124589999999994
No 13
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=99.51 E-value=6.8e-14 Score=133.27 Aligned_cols=107 Identities=23% Similarity=0.184 Sum_probs=85.0
Q ss_pred ceeeeeeEEEEecCCCceecceEeCCcchHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCC
Q 024665 98 EAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFS 177 (264)
Q Consensus 98 ~~vy~e~~~~v~~~~~~~~~yr~~~p~~s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s 177 (264)
...|.++.+++|++ +|++++.++. ..++|+++|||+||++|.+|+++|+++.+.+.|+|+|++
T Consensus 85 ~~~~~~G~~yvQd~-------------sS~l~~~~L~----~~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~ 147 (470)
T PRK11933 85 TAEHLSGLFYIQEA-------------SSMLPVAALF----ADDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYS 147 (470)
T ss_pred ChHHHCCcEEEECH-------------HHHHHHHHhc----cCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCC
Confidence 34778899999998 8888887651 136899999999999999999999999888999999999
Q ss_pred hHHHHHHHHHhhcC--CCeEEEEcCCCCchhhcccCCCccEEEEcCCC
Q 024665 178 HRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQ 223 (264)
Q Consensus 178 ~~~~~~l~~~a~~~--~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p~ 223 (264)
+.-++.+.++.... .||++++.|++++... ....||.|++|+|+
T Consensus 148 ~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~--~~~~fD~ILvDaPC 193 (470)
T PRK11933 148 ASRVKVLHANISRCGVSNVALTHFDGRVFGAA--LPETFDAILLDAPC 193 (470)
T ss_pred HHHHHHHHHHHHHcCCCeEEEEeCchhhhhhh--chhhcCeEEEcCCC
Confidence 65544444444322 3899999999876432 34679999999994
No 14
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.50 E-value=2.2e-13 Score=129.02 Aligned_cols=105 Identities=26% Similarity=0.315 Sum_probs=83.5
Q ss_pred eeeeeeEEEEecCCCceecceEeCCcchHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCCh
Q 024665 99 AVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSH 178 (264)
Q Consensus 99 ~vy~e~~~~v~~~~~~~~~yr~~~p~~s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~ 178 (264)
..|.++.+++|++ +|++++.++ .++++++|||+|||+|.+++++++.+. .++|+++|+++
T Consensus 219 ~~~~~G~~~iQd~-------------~s~~~~~~l------~~~~g~~VLDlgaG~G~~t~~la~~~~-~~~v~a~D~s~ 278 (427)
T PRK10901 219 PGFAEGWVSVQDA-------------AAQLAATLL------APQNGERVLDACAAPGGKTAHILELAP-QAQVVALDIDA 278 (427)
T ss_pred chhhCceEEEECH-------------HHHHHHHHc------CCCCCCEEEEeCCCCChHHHHHHHHcC-CCEEEEEeCCH
Confidence 3677889999997 788877766 478999999999999999999999874 37999999999
Q ss_pred HHHHHHHHHhhcC-CCeEEEEcCCCCchhhcccCCCccEEEEcCCCc
Q 024665 179 RSGRDLVNMAKKR-TNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQP 224 (264)
Q Consensus 179 ~~~~~l~~~a~~~-~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p~~ 224 (264)
.+++.+.+++... .++++++.|+.++... ...++||.|++|+|+.
T Consensus 279 ~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~-~~~~~fD~Vl~D~Pcs 324 (427)
T PRK10901 279 QRLERVRENLQRLGLKATVIVGDARDPAQW-WDGQPFDRILLDAPCS 324 (427)
T ss_pred HHHHHHHHHHHHcCCCeEEEEcCcccchhh-cccCCCCEEEECCCCC
Confidence 8876666655443 2678999999875432 1235799999999953
No 15
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=99.50 E-value=1.1e-13 Score=127.91 Aligned_cols=136 Identities=32% Similarity=0.346 Sum_probs=95.9
Q ss_pred eeeeeEEEEecCCCceecceEeCCcchHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCC-EEEEEeCCh
Q 024665 100 VYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNG-VVYAVEFSH 178 (264)
Q Consensus 100 vy~e~~~~v~~~~~~~~~yr~~~p~~s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g-~V~avD~s~ 178 (264)
.|.++.+++|++ +|++++.++ .++|+++|||+|+++|.+|.|+|+++.+.+ .|+|+|+++
T Consensus 132 ~~~~G~~~vQd~-------------sS~l~a~~L------~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~ 192 (355)
T COG0144 132 EFAEGLIYVQDE-------------ASQLPALVL------DPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSP 192 (355)
T ss_pred hhhceEEEEcCH-------------HHHHHHHHc------CCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCH
Confidence 788999999998 899999887 699999999999999999999999998744 459999996
Q ss_pred HHHHHHHHHhhcC--CCeEEEEcCCCCchhhcccCCCccEEEEcCCC---------chHHH---HHHHHHhCCCcHHHHH
Q 024665 179 RSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQ---------PDQVC---FLCLILFQPIVINNLQ 244 (264)
Q Consensus 179 ~~~~~l~~~a~~~--~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p~---------~~~~~---~~~~~~l~~~~~~~l~ 244 (264)
.-++.+.++.+.. .|+++++.|++..........+||.|++|+|+ |+... ...+..+...+.+.|.
T Consensus 193 ~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~ 272 (355)
T COG0144 193 KRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILA 272 (355)
T ss_pred HHHHHHHHHHHHcCCCceEEEecccccccccccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHH
Confidence 4444444444322 27899999988665332222369999999993 32211 1112222222555566
Q ss_pred HHHHHhh-cch
Q 024665 245 SVNNETK-GGI 254 (264)
Q Consensus 245 ~~~~~Lk-~g~ 254 (264)
.+.+.|| +|.
T Consensus 273 ~a~~~lk~GG~ 283 (355)
T COG0144 273 AALKLLKPGGV 283 (355)
T ss_pred HHHHhcCCCCE
Confidence 6667777 443
No 16
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.49 E-value=2.8e-13 Score=128.82 Aligned_cols=105 Identities=27% Similarity=0.324 Sum_probs=83.6
Q ss_pred ceeeeeeEEEEecCCCceecceEeCCcchHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCC
Q 024665 98 EAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFS 177 (264)
Q Consensus 98 ~~vy~e~~~~v~~~~~~~~~yr~~~p~~s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s 177 (264)
...|.++.+++|++ ++.+++.++ .++++++|||+|||+|.+++++++.+++.++|+++|++
T Consensus 224 ~~~~~~G~~~~qd~-------------~s~lv~~~l------~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~ 284 (444)
T PRK14902 224 TDLFKDGLITIQDE-------------SSMLVAPAL------DPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIH 284 (444)
T ss_pred ChHHhCceEEEECh-------------HHHHHHHHh------CCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCC
Confidence 34778889999987 777776655 47889999999999999999999998778899999999
Q ss_pred hHHHHHHHHHhhcC--CCeEEEEcCCCCchhhcccCCCccEEEEcCCC
Q 024665 178 HRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQ 223 (264)
Q Consensus 178 ~~~~~~l~~~a~~~--~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p~ 223 (264)
+.+++.+.++.... .+|++++.|+.++... +.+.||+|++|+|+
T Consensus 285 ~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~--~~~~fD~Vl~D~Pc 330 (444)
T PRK14902 285 EHKLKLIEENAKRLGLTNIETKALDARKVHEK--FAEKFDKILVDAPC 330 (444)
T ss_pred HHHHHHHHHHHHHcCCCeEEEEeCCcccccch--hcccCCEEEEcCCC
Confidence 88766555544432 3799999999875421 23689999999984
No 17
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.47 E-value=2.8e-13 Score=128.86 Aligned_cols=102 Identities=26% Similarity=0.260 Sum_probs=81.9
Q ss_pred eeeeeeEEEEecCCCceecceEeCCcchHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCCh
Q 024665 99 AVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSH 178 (264)
Q Consensus 99 ~vy~e~~~~v~~~~~~~~~yr~~~p~~s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~ 178 (264)
..|.++.+++|++ ++.++..++ .+.++++|||+|||+|.+|+++++.+.+.++|+|+|+|+
T Consensus 225 ~~~~~G~~~vqd~-------------~s~l~~~~l------~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~ 285 (445)
T PRK14904 225 PFLKLGLVSVQNP-------------TQALACLLL------NPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYP 285 (445)
T ss_pred hHHhCcEEEEeCH-------------HHHHHHHhc------CCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCH
Confidence 3677788888886 666666655 477899999999999999999999987778999999998
Q ss_pred HHHHHHHHHhhcC--CCeEEEEcCCCCchhhcccCCCccEEEEcCCC
Q 024665 179 RSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQ 223 (264)
Q Consensus 179 ~~~~~l~~~a~~~--~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p~ 223 (264)
.+++.+.+.+... .||++++.|+.++.+ ...||+|++|+|+
T Consensus 286 ~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~----~~~fD~Vl~D~Pc 328 (445)
T PRK14904 286 QKLEKIRSHASALGITIIETIEGDARSFSP----EEQPDAILLDAPC 328 (445)
T ss_pred HHHHHHHHHHHHhCCCeEEEEeCccccccc----CCCCCEEEEcCCC
Confidence 8876665555432 379999999987542 3579999999994
No 18
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.46 E-value=5e-13 Score=126.49 Aligned_cols=104 Identities=18% Similarity=0.214 Sum_probs=79.8
Q ss_pred eeeeeeEEEEecCCCceecceEeCCcchHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCCh
Q 024665 99 AVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSH 178 (264)
Q Consensus 99 ~vy~e~~~~v~~~~~~~~~yr~~~p~~s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~ 178 (264)
..|.++.+++|++ +|++++.++ .++++++|||+|||+|.+|.++++.++ .++|+|+|+++
T Consensus 213 ~~~~~G~~~~Qd~-------------~s~~~~~~L------~~~~g~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~ 272 (426)
T TIGR00563 213 PGFEEGWVTVQDA-------------SAQWVATWL------APQNEETILDACAAPGGKTTHILELAP-QAQVVALDIHE 272 (426)
T ss_pred chhhCCeEEEECH-------------HHHHHHHHh------CCCCCCeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCH
Confidence 4788999999997 788777766 478999999999999999999999985 78999999998
Q ss_pred HHHHHHHHHhhcCC-C--eEEEEcCCCCchhhcccCCCccEEEEcCCC
Q 024665 179 RSGRDLVNMAKKRT-N--VIPIIEDARHPAKYRMLVGMVDVIFSDVAQ 223 (264)
Q Consensus 179 ~~~~~l~~~a~~~~-n--V~~i~~D~~~~~~~~~~~~~fD~V~~d~p~ 223 (264)
.+++.+.++.+... + ++++++|+.++..+ .....||+|++|+|+
T Consensus 273 ~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~-~~~~~fD~VllDaPc 319 (426)
T TIGR00563 273 HRLKRVYENLKRLGLTIKAETKDGDGRGPSQW-AENEQFDRILLDAPC 319 (426)
T ss_pred HHHHHHHHHHHHcCCCeEEEEecccccccccc-ccccccCEEEEcCCC
Confidence 88766655554322 2 34466776654321 123579999999993
No 19
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.45 E-value=6.4e-13 Score=115.91 Aligned_cols=94 Identities=23% Similarity=0.276 Sum_probs=80.1
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC--CCeEEEEcCCCCchhhcccCCCccEEE
Q 024665 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIF 218 (264)
Q Consensus 141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~--~nV~~i~~D~~~~~~~~~~~~~fD~V~ 218 (264)
++||++|||||||||-+++.+++.++ .++|+++|+|+.|++...+..... .+|+++++||.+++ +.+++||+|.
T Consensus 49 ~~~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LP---f~D~sFD~vt 124 (238)
T COG2226 49 IKPGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLP---FPDNSFDAVT 124 (238)
T ss_pred CCCCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCC---CCCCccCEEE
Confidence 66999999999999999999999987 899999999999987776666542 26999999999987 4678999998
Q ss_pred Ec-----CCCchHHHHHHHHHhCCC
Q 024665 219 SD-----VAQPDQVCFLCLILFQPI 238 (264)
Q Consensus 219 ~d-----~p~~~~~~~~~~~~l~~~ 238 (264)
+. ++.++.+.......++|+
T Consensus 125 ~~fglrnv~d~~~aL~E~~RVlKpg 149 (238)
T COG2226 125 ISFGLRNVTDIDKALKEMYRVLKPG 149 (238)
T ss_pred eeehhhcCCCHHHHHHHHHHhhcCC
Confidence 74 457778888888888887
No 20
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.45 E-value=2.6e-13 Score=122.14 Aligned_cols=155 Identities=17% Similarity=0.266 Sum_probs=97.9
Q ss_pred CceeeecceeeceEEEecCCcccccccccCCCceeeeeeEEEEecCCCceecceEeCCcchHHHHHHHhcccccCCCCCC
Q 024665 66 GSKVVVEPHRHEGVFIAKGKEDALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGA 145 (264)
Q Consensus 66 g~k~~i~~~~~~g~~~~~~~~d~l~~~~~~~g~~vy~e~~~~v~~~~~~~~~yr~~~p~~s~l~~~il~~l~~~~l~~g~ 145 (264)
+.+++|.|+|++ | .....+..+..+ ||. .|+++ .|| ++++|..++..+ .++++
T Consensus 111 g~~~~I~P~w~~--~-~~~~~~~~I~id--Pg~-AFGTG----~H~-------------TT~lcl~~l~~~----~~~g~ 163 (295)
T PF06325_consen 111 GDRLVIVPSWEE--Y-PEPPDEIVIEID--PGM-AFGTG----HHP-------------TTRLCLELLEKY----VKPGK 163 (295)
T ss_dssp CTTEEEEETT-------SSTTSEEEEES--TTS-SS-SS----HCH-------------HHHHHHHHHHHH----SSTTS
T ss_pred CCcEEEECCCcc--c-CCCCCcEEEEEC--CCC-cccCC----CCH-------------HHHHHHHHHHHh----ccCCC
Confidence 567899999987 3 222344455655 775 88888 377 889998888443 67889
Q ss_pred EEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC---CCeEEEEcCCCCchhhcccCCCccEEEEcCC
Q 024665 146 RVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDVIFSDVA 222 (264)
Q Consensus 146 ~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~---~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p 222 (264)
+|||+|||||.+++.++.+ ...+|+|+|+++.+++...+++..+ .++.+. ...+. ...+||+|++|..
T Consensus 164 ~vLDvG~GSGILaiaA~kl--GA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~~~~~-----~~~~~dlvvANI~ 234 (295)
T PF06325_consen 164 RVLDVGCGSGILAIAAAKL--GAKKVVAIDIDPLAVEAARENAELNGVEDRIEVS--LSEDL-----VEGKFDLVVANIL 234 (295)
T ss_dssp EEEEES-TTSHHHHHHHHT--TBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--CTSCT-----CCS-EEEEEEES-
T ss_pred EEEEeCCcHHHHHHHHHHc--CCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--Eeccc-----ccccCCEEEECCC
Confidence 9999999999999999987 4679999999987765555544443 355442 22221 2378999999987
Q ss_pred Cch-HHHHH-HHHHhCCC--------cHHHHHHHHHHhhcchhhh
Q 024665 223 QPD-QVCFL-CLILFQPI--------VINNLQSVNNETKGGIFEF 257 (264)
Q Consensus 223 ~~~-~~~~~-~~~~l~~~--------~~~~l~~~~~~Lk~g~f~~ 257 (264)
... ..... ..+.++|. +..+...+.++++. .|.+
T Consensus 235 ~~vL~~l~~~~~~~l~~~G~lIlSGIl~~~~~~v~~a~~~-g~~~ 278 (295)
T PF06325_consen 235 ADVLLELAPDIASLLKPGGYLILSGILEEQEDEVIEAYKQ-GFEL 278 (295)
T ss_dssp HHHHHHHHHHCHHHEEEEEEEEEEEEEGGGHHHHHHHHHT-TEEE
T ss_pred HHHHHHHHHHHHHhhCCCCEEEEccccHHHHHHHHHHHHC-CCEE
Confidence 322 11111 22334443 66677777777765 4443
No 21
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.42 E-value=1.7e-13 Score=119.74 Aligned_cols=96 Identities=21% Similarity=0.268 Sum_probs=65.8
Q ss_pred CCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC--CCeEEEEcCCCCchhhcccCCCccEE
Q 024665 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVI 217 (264)
Q Consensus 140 ~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~--~nV~~i~~D~~~~~~~~~~~~~fD~V 217 (264)
.++++.+|||+|||||.++..+++.+++.++|+++|+|+.|++...+..... .||+++++|+++++ ...++||+|
T Consensus 44 ~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp---~~d~sfD~v 120 (233)
T PF01209_consen 44 GLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLP---FPDNSFDAV 120 (233)
T ss_dssp T--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB-----S-TT-EEEE
T ss_pred CCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhc---CCCCceeEE
Confidence 3788999999999999999999999888899999999999987766665433 39999999999976 345799999
Q ss_pred EEcC-----CCchHHHHHHHHHhCCC
Q 024665 218 FSDV-----AQPDQVCFLCLILFQPI 238 (264)
Q Consensus 218 ~~d~-----p~~~~~~~~~~~~l~~~ 238 (264)
++-. +.+..+.......++|+
T Consensus 121 ~~~fglrn~~d~~~~l~E~~RVLkPG 146 (233)
T PF01209_consen 121 TCSFGLRNFPDRERALREMYRVLKPG 146 (233)
T ss_dssp EEES-GGG-SSHHHHHHHHHHHEEEE
T ss_pred EHHhhHHhhCCHHHHHHHHHHHcCCC
Confidence 9743 45556666666666665
No 22
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.41 E-value=9.8e-13 Score=115.00 Aligned_cols=116 Identities=16% Similarity=0.207 Sum_probs=83.5
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHH---HHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEE
Q 024665 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSG---RDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVI 217 (264)
Q Consensus 141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~---~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V 217 (264)
+....+|||+|||+|.+++.+|++.. ..+|++||++++++ ++.++.|....+|++++.|+.++.+. ....+||+|
T Consensus 42 ~~~~~~IlDlGaG~G~l~L~la~r~~-~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~-~~~~~fD~I 119 (248)
T COG4123 42 VPKKGRILDLGAGNGALGLLLAQRTE-KAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKA-LVFASFDLI 119 (248)
T ss_pred cccCCeEEEecCCcCHHHHHHhccCC-CCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhc-ccccccCEE
Confidence 55578999999999999999999864 47999999998774 34444444455999999999987754 233479999
Q ss_pred EEcCCC--------chHHHHHHHHHhCCCcHHHHHHHHHHhh-cchhhhh
Q 024665 218 FSDVAQ--------PDQVCFLCLILFQPIVINNLQSVNNETK-GGIFEFL 258 (264)
Q Consensus 218 ~~d~p~--------~~~~~~~~~~~l~~~~~~~l~~~~~~Lk-~g~f~~l 258 (264)
+||||. +++....+...........+..+.+.|| +|.+.++
T Consensus 120 i~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V 169 (248)
T COG4123 120 ICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFV 169 (248)
T ss_pred EeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEE
Confidence 999992 2233333333333336666666677788 7777665
No 23
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.38 E-value=1.1e-11 Score=111.67 Aligned_cols=121 Identities=17% Similarity=0.160 Sum_probs=78.9
Q ss_pred chHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC---CCeEEEEcCC
Q 024665 125 RSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDA 201 (264)
Q Consensus 125 ~s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~---~nV~~i~~D~ 201 (264)
++.++..++.. ..+++++|||+|||+|.+++.++.. ...+|+++|+|+.+++.+.++...+ .++.++..|.
T Consensus 145 tt~l~l~~l~~----~~~~g~~VLDvGcGsG~lai~aa~~--g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~ 218 (288)
T TIGR00406 145 TTSLCLEWLED----LDLKDKNVIDVGCGSGILSIAALKL--GAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYL 218 (288)
T ss_pred HHHHHHHHHHh----hcCCCCEEEEeCCChhHHHHHHHHc--CCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEeccc
Confidence 56666666533 2457899999999999999988865 3568999999988865555544332 2566666663
Q ss_pred CCchhhcccCCCccEEEEcCCCch--HHHHHHHHHhCCC--------cHHHHHHHHHHhhcchhhh
Q 024665 202 RHPAKYRMLVGMVDVIFSDVAQPD--QVCFLCLILFQPI--------VINNLQSVNNETKGGIFEF 257 (264)
Q Consensus 202 ~~~~~~~~~~~~fD~V~~d~p~~~--~~~~~~~~~l~~~--------~~~~l~~~~~~Lk~g~f~~ 257 (264)
... ..++||+|++|..... .........++|. ...+..++.+.++.. |.+
T Consensus 219 ~~~-----~~~~fDlVvan~~~~~l~~ll~~~~~~LkpgG~li~sgi~~~~~~~v~~~~~~~-f~~ 278 (288)
T TIGR00406 219 EQP-----IEGKADVIVANILAEVIKELYPQFSRLVKPGGWLILSGILETQAQSVCDAYEQG-FTV 278 (288)
T ss_pred ccc-----cCCCceEEEEecCHHHHHHHHHHHHHHcCCCcEEEEEeCcHhHHHHHHHHHHcc-Cce
Confidence 322 2468999999976322 2333345566665 445556666666654 544
No 24
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.34 E-value=1.2e-11 Score=100.69 Aligned_cols=79 Identities=22% Similarity=0.265 Sum_probs=63.7
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC--CCeEEEEcCCCCchhhcccCCCccEEEE
Q 024665 142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIFS 219 (264)
Q Consensus 142 ~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~--~nV~~i~~D~~~~~~~~~~~~~fD~V~~ 219 (264)
+.+.+|||+|||+|.++..+++...+..+|+++|+|+.+++.+.+.+... .|++++++|+.+++.. +.++||+|++
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~--~~~~~D~I~~ 79 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQE--LEEKFDIIIS 79 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGC--SSTTEEEEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccc--cCCCeeEEEE
Confidence 46789999999999999999977677889999999999987766655432 3899999999995421 2279999999
Q ss_pred cCC
Q 024665 220 DVA 222 (264)
Q Consensus 220 d~p 222 (264)
+.+
T Consensus 80 ~~~ 82 (152)
T PF13847_consen 80 NGV 82 (152)
T ss_dssp EST
T ss_pred cCc
Confidence 865
No 25
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.33 E-value=1.8e-11 Score=93.87 Aligned_cols=74 Identities=23% Similarity=0.305 Sum_probs=60.6
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHh---hcCCCeEEEEcCC-CCchhhcccCCCccEEE
Q 024665 143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMA---KKRTNVIPIIEDA-RHPAKYRMLVGMVDVIF 218 (264)
Q Consensus 143 ~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a---~~~~nV~~i~~D~-~~~~~~~~~~~~fD~V~ 218 (264)
|+.+|||||||+|.++..+++.. +..+|++||+|+.+++.+.+.+ ....||++++.|+ .... ..++||+|+
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----~~~~~D~v~ 75 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLF-PGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPD----FLEPFDLVI 75 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTT----TSSCEEEEE
T ss_pred CCCEEEEEcCcCCHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcc----cCCCCCEEE
Confidence 68899999999999999999954 5779999999999987776666 2345999999999 2222 346899999
Q ss_pred EcC
Q 024665 219 SDV 221 (264)
Q Consensus 219 ~d~ 221 (264)
++.
T Consensus 76 ~~~ 78 (112)
T PF12847_consen 76 CSG 78 (112)
T ss_dssp ECS
T ss_pred ECC
Confidence 986
No 26
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=99.32 E-value=2.3e-12 Score=115.70 Aligned_cols=105 Identities=30% Similarity=0.359 Sum_probs=84.5
Q ss_pred eeeeeeEEEEecCCCceecceEeCCcchHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCCh
Q 024665 99 AVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSH 178 (264)
Q Consensus 99 ~vy~e~~~~v~~~~~~~~~yr~~~p~~s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~ 178 (264)
..|.++.+++|++ +|++++.++ .++|+++|||+||++|.+|.++|+++...+.|+|+|+++
T Consensus 60 ~~~~~G~~~vQd~-------------sS~l~~~~L------~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~ 120 (283)
T PF01189_consen 60 PEFKNGLFYVQDE-------------SSQLVALAL------DPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISP 120 (283)
T ss_dssp HHHHTTSEEEHHH-------------HHHHHHHHH------TTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSH
T ss_pred hhhhCCcEEeccc-------------ccccccccc------cccccccccccccCCCCceeeeeecccchhHHHHhccCH
Confidence 3688889999997 889988887 588999999999999999999999999899999999996
Q ss_pred HHHHHHHHHhhcC--CCeEEEEcCCCCchhhcccCCCccEEEEcCCC
Q 024665 179 RSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQ 223 (264)
Q Consensus 179 ~~~~~l~~~a~~~--~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p~ 223 (264)
.-++.+.++.... .||.+++.|++.+... .....||.|++|+|+
T Consensus 121 ~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~-~~~~~fd~VlvDaPC 166 (283)
T PF01189_consen 121 KRLKRLKENLKRLGVFNVIVINADARKLDPK-KPESKFDRVLVDAPC 166 (283)
T ss_dssp HHHHHHHHHHHHTT-SSEEEEESHHHHHHHH-HHTTTEEEEEEECSC
T ss_pred HHHHHHHHHHHhcCCceEEEEeecccccccc-ccccccchhhcCCCc
Confidence 5444544444332 3889998998876432 123469999999993
No 27
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.32 E-value=5.4e-11 Score=99.43 Aligned_cols=114 Identities=20% Similarity=0.235 Sum_probs=84.7
Q ss_pred HHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc--CCCeEEEEcCCCCchhhc
Q 024665 131 AVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK--RTNVIPIIEDARHPAKYR 208 (264)
Q Consensus 131 ~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~--~~nV~~i~~D~~~~~~~~ 208 (264)
..+..|. ++|+++++|+|||||++++.+| ++.|.++|||+|.++++++...+++.+ -+|++++.+|+-+..+
T Consensus 25 l~ls~L~---~~~g~~l~DIGaGtGsi~iE~a-~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~-- 98 (187)
T COG2242 25 LTLSKLR---PRPGDRLWDIGAGTGSITIEWA-LAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALP-- 98 (187)
T ss_pred HHHHhhC---CCCCCEEEEeCCCccHHHHHHH-HhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhc--
Confidence 3344444 9999999999999999999999 778999999999998776443333332 3499999999987653
Q ss_pred ccCCCccEEEEcCCCch-HHHHHHHHHhCCC--------cHHHHHHHHHHhh
Q 024665 209 MLVGMVDVIFSDVAQPD-QVCFLCLILFQPI--------VINNLQSVNNETK 251 (264)
Q Consensus 209 ~~~~~fD~V~~d~p~~~-~~~~~~~~~l~~~--------~~~~l~~~~~~Lk 251 (264)
.+ ..+|+||..-.-.. ......+..+++. +++.+..+++.++
T Consensus 99 ~~-~~~daiFIGGg~~i~~ile~~~~~l~~ggrlV~naitlE~~~~a~~~~~ 149 (187)
T COG2242 99 DL-PSPDAIFIGGGGNIEEILEAAWERLKPGGRLVANAITLETLAKALEALE 149 (187)
T ss_pred CC-CCCCEEEECCCCCHHHHHHHHHHHcCcCCeEEEEeecHHHHHHHHHHHH
Confidence 12 37999999877333 3444455556775 6777777777777
No 28
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.32 E-value=1.2e-11 Score=109.94 Aligned_cols=135 Identities=16% Similarity=0.149 Sum_probs=90.5
Q ss_pred cccccccCCCceeeeeeEEEEecCCCceecceEeCCcchHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCC
Q 024665 88 ALVTKNLVAGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGP 167 (264)
Q Consensus 88 ~l~~~~~~~g~~vy~e~~~~v~~~~~~~~~yr~~~p~~s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~ 167 (264)
..+.++|++.+..|.+...+++.. ...-...++ +.+.++||++|||+|||.|.+++.+|+..
T Consensus 33 l~Ld~~~~Yscayf~~~~~tL~eA-------------Q~~k~~~~~---~kl~L~~G~~lLDiGCGWG~l~~~aA~~y-- 94 (283)
T COG2230 33 LFLDPSMTYSCAYFEDPDMTLEEA-------------QRAKLDLIL---EKLGLKPGMTLLDIGCGWGGLAIYAAEEY-- 94 (283)
T ss_pred HhcCCCCceeeEEeCCCCCChHHH-------------HHHHHHHHH---HhcCCCCCCEEEEeCCChhHHHHHHHHHc--
Confidence 467777777776666665454443 222223333 34459999999999999999999999996
Q ss_pred CCEEEEEeCChHHHHHHHHHhhc---CCCeEEEEcCCCCchhhcccCCCccEEEEcCCCchHHHHHHHHHhCCC-cHHHH
Q 024665 168 NGVVYAVEFSHRSGRDLVNMAKK---RTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQVCFLCLILFQPI-VINNL 243 (264)
Q Consensus 168 ~g~V~avD~s~~~~~~l~~~a~~---~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p~~~~~~~~~~~~l~~~-~~~~l 243 (264)
..+|+++++|+...+...+.+.. ..||+++..|.+++. +.||.|++- -+...+-.. ...++
T Consensus 95 ~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~------e~fDrIvSv---------gmfEhvg~~~~~~ff 159 (283)
T COG2230 95 GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE------EPFDRIVSV---------GMFEHVGKENYDDFF 159 (283)
T ss_pred CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc------cccceeeeh---------hhHHHhCcccHHHHH
Confidence 46899999997765554443333 348999999998865 569999972 222222222 55556
Q ss_pred HHHHHHhh-cchh
Q 024665 244 QSVNNETK-GGIF 255 (264)
Q Consensus 244 ~~~~~~Lk-~g~f 255 (264)
..+.+.|+ +|.+
T Consensus 160 ~~~~~~L~~~G~~ 172 (283)
T COG2230 160 KKVYALLKPGGRM 172 (283)
T ss_pred HHHHhhcCCCceE
Confidence 66666666 4443
No 29
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.31 E-value=5.5e-11 Score=101.21 Aligned_cols=110 Identities=18% Similarity=0.236 Sum_probs=83.1
Q ss_pred CCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc---CCCeEEEEcCCCCchhhcccCCCccE
Q 024665 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK---RTNVIPIIEDARHPAKYRMLVGMVDV 216 (264)
Q Consensus 140 ~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~---~~nV~~i~~D~~~~~~~~~~~~~fD~ 216 (264)
.+.++++|||+|||+|.+++.++..+++.++|+++|+++.+++.+.+++.. ..|+++++.|+.+..+ ...+.||+
T Consensus 37 ~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~--~~~~~~D~ 114 (198)
T PRK00377 37 RLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILF--TINEKFDR 114 (198)
T ss_pred CCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHh--hcCCCCCE
Confidence 488999999999999999999998887778999999998886655444332 2489999999876432 23368999
Q ss_pred EEEcCC--CchHHHHHHHHHhCCC--------cHHHHHHHHHHhh
Q 024665 217 IFSDVA--QPDQVCFLCLILFQPI--------VINNLQSVNNETK 251 (264)
Q Consensus 217 V~~d~p--~~~~~~~~~~~~l~~~--------~~~~l~~~~~~Lk 251 (264)
|+++.. .+........+.++|. ..+.+.++.+.|+
T Consensus 115 V~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~ 159 (198)
T PRK00377 115 IFIGGGSEKLKEIISASWEIIKKGGRIVIDAILLETVNNALSALE 159 (198)
T ss_pred EEECCCcccHHHHHHHHHHHcCCCcEEEEEeecHHHHHHHHHHHH
Confidence 999654 3445555566677776 4566777777776
No 30
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.31 E-value=3.7e-11 Score=103.56 Aligned_cols=93 Identities=27% Similarity=0.410 Sum_probs=72.1
Q ss_pred hHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC--CCeEEEEcCCCC
Q 024665 126 SKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARH 203 (264)
Q Consensus 126 s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~--~nV~~i~~D~~~ 203 (264)
+.+.+.++..++ ++++++|||+|||+|.++..|++.+.+.++|+++|+++.+++.+.+..... .|++++++|+.+
T Consensus 63 p~~~~~~~~~l~---~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~ 139 (215)
T TIGR00080 63 PHMVAMMTELLE---LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQ 139 (215)
T ss_pred HHHHHHHHHHhC---CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCccc
Confidence 345555655554 889999999999999999999999877788999999998876655544332 489999999977
Q ss_pred chhhcccCCCccEEEEcCCCc
Q 024665 204 PAKYRMLVGMVDVIFSDVAQP 224 (264)
Q Consensus 204 ~~~~~~~~~~fD~V~~d~p~~ 224 (264)
... ...+||+|+++.+.+
T Consensus 140 ~~~---~~~~fD~Ii~~~~~~ 157 (215)
T TIGR00080 140 GWE---PLAPYDRIYVTAAGP 157 (215)
T ss_pred CCc---ccCCCCEEEEcCCcc
Confidence 432 235899999987643
No 31
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.28 E-value=6.8e-11 Score=101.86 Aligned_cols=92 Identities=27% Similarity=0.304 Sum_probs=72.1
Q ss_pred hHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC--CCeEEEEcCCCC
Q 024665 126 SKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARH 203 (264)
Q Consensus 126 s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~--~nV~~i~~D~~~ 203 (264)
+.+.+.++..++ ++++++|||+|||+|+++..+++.+++.++|+++|+++++++...+..... .||+++++|+.+
T Consensus 62 p~~~~~~~~~l~---~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~ 138 (212)
T PRK13942 62 IHMVAIMCELLD---LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTL 138 (212)
T ss_pred HHHHHHHHHHcC---CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCccc
Confidence 456666665555 899999999999999999999999877789999999998876555444322 389999999876
Q ss_pred chhhcccCCCccEEEEcCCC
Q 024665 204 PAKYRMLVGMVDVIFSDVAQ 223 (264)
Q Consensus 204 ~~~~~~~~~~fD~V~~d~p~ 223 (264)
... ...+||+|+++...
T Consensus 139 ~~~---~~~~fD~I~~~~~~ 155 (212)
T PRK13942 139 GYE---ENAPYDRIYVTAAG 155 (212)
T ss_pred CCC---cCCCcCEEEECCCc
Confidence 532 23689999998653
No 32
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.28 E-value=1.7e-11 Score=102.02 Aligned_cols=75 Identities=27% Similarity=0.275 Sum_probs=57.7
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCC--CeEEEEcCCCCchhhcccCCCccEEEEc
Q 024665 143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRT--NVIPIIEDARHPAKYRMLVGMVDVIFSD 220 (264)
Q Consensus 143 ~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~--nV~~i~~D~~~~~~~~~~~~~fD~V~~d 220 (264)
+..+|||+|||+|.+++.++... +..+|+++|+++++++.+.+....+. ++++++.|..+..+ ..+||+|++|
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~-~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~----~~~fD~Iv~N 105 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRG-PDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALP----DGKFDLIVSN 105 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTS-TCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCC----TTCEEEEEE-
T ss_pred cCCeEEEecCChHHHHHHHHHhC-CCCEEEEEcCCHHHHHHHHHHHHhcCcccccccccccccccc----ccceeEEEEc
Confidence 77899999999999999999874 56689999999988655544444332 49999999877542 4799999999
Q ss_pred CC
Q 024665 221 VA 222 (264)
Q Consensus 221 ~p 222 (264)
||
T Consensus 106 PP 107 (170)
T PF05175_consen 106 PP 107 (170)
T ss_dssp --
T ss_pred cc
Confidence 99
No 33
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=99.26 E-value=1e-11 Score=114.27 Aligned_cols=106 Identities=25% Similarity=0.301 Sum_probs=83.5
Q ss_pred ceeeeeeEEEEecCCCceecceEeCCcchHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCC
Q 024665 98 EAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFS 177 (264)
Q Consensus 98 ~~vy~e~~~~v~~~~~~~~~yr~~~p~~s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s 177 (264)
...|.++.+.+|+. +|.++...+ .++|+++|||+||++|..|.|+|.+|+.+|.|||.|.+
T Consensus 215 t~e~lag~~~LQ~~-------------sS~Lpv~aL------~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n 275 (460)
T KOG1122|consen 215 TPEYLAGHYMLQNA-------------SSFLPVMAL------DPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSN 275 (460)
T ss_pred chhhcccceeeccC-------------cccceeeec------CCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccc
Confidence 34667777777776 666665554 59999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhhcC--CCeEEEEcCCCCchhhcccCCCccEEEEcCCC
Q 024665 178 HRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQ 223 (264)
Q Consensus 178 ~~~~~~l~~~a~~~--~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p~ 223 (264)
+.-++.+.+++... .|.++.+.|..+++.. ...++||.|++|+|+
T Consensus 276 ~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~-~~~~~fDRVLLDAPC 322 (460)
T KOG1122|consen 276 ENRLKSLKANLHRLGVTNTIVSNYDGREFPEK-EFPGSFDRVLLDAPC 322 (460)
T ss_pred hHHHHHHHHHHHHhCCCceEEEccCccccccc-ccCcccceeeecCCC
Confidence 66555555555433 3899999999876532 233489999999994
No 34
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.26 E-value=2.3e-11 Score=104.63 Aligned_cols=102 Identities=28% Similarity=0.307 Sum_probs=72.3
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhh-----cccCCCcc
Q 024665 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKY-----RMLVGMVD 215 (264)
Q Consensus 141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~-----~~~~~~fD 215 (264)
++++.+|||||||||.++..+++.+++.++|+|||+++ + + ..++|+++++|++++... .....+||
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~-------~-~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D 119 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M-------D-PIVGVDFLQGDFRDELVLKALLERVGDSKVQ 119 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c-------c-CCCCcEEEecCCCChHHHHHHHHHhCCCCCC
Confidence 68899999999999999999999988788999999997 1 1 125799999999985310 12346899
Q ss_pred EEEEcCCC-----c--hHHHHHHHHHhCCCcHHHHHHHHHHhh-cchhhh
Q 024665 216 VIFSDVAQ-----P--DQVCFLCLILFQPIVINNLQSVNNETK-GGIFEF 257 (264)
Q Consensus 216 ~V~~d~p~-----~--~~~~~~~~~~l~~~~~~~l~~~~~~Lk-~g~f~~ 257 (264)
+|++|+.. + +...... + ....+..+.+.|+ +|.|.+
T Consensus 120 ~V~S~~~~~~~g~~~~d~~~~~~---~---~~~~L~~~~~~LkpGG~~vi 163 (209)
T PRK11188 120 VVMSDMAPNMSGTPAVDIPRAMY---L---VELALDMCRDVLAPGGSFVV 163 (209)
T ss_pred EEecCCCCccCCChHHHHHHHHH---H---HHHHHHHHHHHcCCCCEEEE
Confidence 99999842 1 1111100 1 2345666677777 666644
No 35
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.26 E-value=1.2e-10 Score=103.54 Aligned_cols=96 Identities=23% Similarity=0.151 Sum_probs=75.8
Q ss_pred CCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhh-----cCCCeEEEEcCCCCchhhcccCCCc
Q 024665 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAK-----KRTNVIPIIEDARHPAKYRMLVGMV 214 (264)
Q Consensus 140 ~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~-----~~~nV~~i~~D~~~~~~~~~~~~~f 214 (264)
.++++++|||+|||+|.++..+++.+++.++|+|+|+|+.|++.+.+... ...||+++++|+.+++ ...++|
T Consensus 70 ~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp---~~~~sf 146 (261)
T PLN02233 70 GAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLP---FDDCYF 146 (261)
T ss_pred CCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCC---CCCCCE
Confidence 47789999999999999999999988777899999999999766554332 1248999999998865 245689
Q ss_pred cEEEEcCC-----CchHHHHHHHHHhCCC
Q 024665 215 DVIFSDVA-----QPDQVCFLCLILFQPI 238 (264)
Q Consensus 215 D~V~~d~p-----~~~~~~~~~~~~l~~~ 238 (264)
|+|++... .+..........++|+
T Consensus 147 D~V~~~~~l~~~~d~~~~l~ei~rvLkpG 175 (261)
T PLN02233 147 DAITMGYGLRNVVDRLKAMQEMYRVLKPG 175 (261)
T ss_pred eEEEEecccccCCCHHHHHHHHHHHcCcC
Confidence 99988543 5666677777777776
No 36
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.26 E-value=1.2e-10 Score=99.75 Aligned_cols=91 Identities=19% Similarity=0.248 Sum_probs=69.9
Q ss_pred HHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC---CCeEEEEcCCCC
Q 024665 127 KLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARH 203 (264)
Q Consensus 127 ~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~---~nV~~i~~D~~~ 203 (264)
.+.+.++..++ ++++++|||+|||+|.++..+++.+++.++|+++|+++.+++...++.... .+++++++|+.+
T Consensus 59 ~~~~~~~~~l~---~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~ 135 (205)
T PRK13944 59 HMVAMMCELIE---PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKR 135 (205)
T ss_pred HHHHHHHHhcC---CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCccc
Confidence 44555555554 889999999999999999999999877789999999998865544433322 369999999987
Q ss_pred chhhcccCCCccEEEEcCCC
Q 024665 204 PAKYRMLVGMVDVIFSDVAQ 223 (264)
Q Consensus 204 ~~~~~~~~~~fD~V~~d~p~ 223 (264)
..+ ...+||+|+++.+.
T Consensus 136 ~~~---~~~~fD~Ii~~~~~ 152 (205)
T PRK13944 136 GLE---KHAPFDAIIVTAAA 152 (205)
T ss_pred CCc---cCCCccEEEEccCc
Confidence 442 23589999998764
No 37
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.25 E-value=4.7e-11 Score=99.70 Aligned_cols=89 Identities=21% Similarity=0.126 Sum_probs=70.9
Q ss_pred hHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC-CCeEEEEcCCCCc
Q 024665 126 SKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHP 204 (264)
Q Consensus 126 s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~-~nV~~i~~D~~~~ 204 (264)
..+++.++..+.....-.+..|+|+|||||.+++.++.+ ....|+|||+++++++-+.+++.+. .+|.+++.|+.++
T Consensus 28 ~~~Aa~il~~a~~~g~l~g~~V~DlG~GTG~La~ga~~l--Ga~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~ 105 (198)
T COG2263 28 APLAAYILWVAYLRGDLEGKTVLDLGAGTGILAIGAALL--GASRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDF 105 (198)
T ss_pred hHHHHHHHHHHHHcCCcCCCEEEEcCCCcCHHHHHHHhc--CCcEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhc
Confidence 345666654443335667889999999999999999976 4669999999998887766666543 3899999999986
Q ss_pred hhhcccCCCccEEEEcCC
Q 024665 205 AKYRMLVGMVDVIFSDVA 222 (264)
Q Consensus 205 ~~~~~~~~~fD~V~~d~p 222 (264)
. ..+|.|++|||
T Consensus 106 ~------~~~dtvimNPP 117 (198)
T COG2263 106 R------GKFDTVIMNPP 117 (198)
T ss_pred C------CccceEEECCC
Confidence 5 68999999999
No 38
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.24 E-value=1.3e-10 Score=100.64 Aligned_cols=96 Identities=18% Similarity=0.118 Sum_probs=72.5
Q ss_pred CCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc--CCCeEEEEcCCCCchhhcccCCCccEE
Q 024665 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK--RTNVIPIIEDARHPAKYRMLVGMVDVI 217 (264)
Q Consensus 140 ~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~--~~nV~~i~~D~~~~~~~~~~~~~fD~V 217 (264)
.++++++|||+|||+|.++..+++.+++.++|+++|+++.+++.+.+.... ..++++++.|+.+.+ ...++||+|
T Consensus 42 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~---~~~~~fD~V 118 (231)
T TIGR02752 42 NVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELP---FDDNSFDYV 118 (231)
T ss_pred CCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCC---CCCCCccEE
Confidence 378899999999999999999999987788999999998886555544332 248999999998754 234689999
Q ss_pred EEcCC-----CchHHHHHHHHHhCCC
Q 024665 218 FSDVA-----QPDQVCFLCLILFQPI 238 (264)
Q Consensus 218 ~~d~p-----~~~~~~~~~~~~l~~~ 238 (264)
+++.. .+.+........++|+
T Consensus 119 ~~~~~l~~~~~~~~~l~~~~~~Lk~g 144 (231)
T TIGR02752 119 TIGFGLRNVPDYMQVLREMYRVVKPG 144 (231)
T ss_pred EEecccccCCCHHHHHHHHHHHcCcC
Confidence 98644 3444444455566665
No 39
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.24 E-value=6.3e-11 Score=101.91 Aligned_cols=95 Identities=27% Similarity=0.376 Sum_probs=70.2
Q ss_pred chHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc--CCCeEEEEcCCC
Q 024665 125 RSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK--RTNVIPIIEDAR 202 (264)
Q Consensus 125 ~s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~--~~nV~~i~~D~~ 202 (264)
.+.+.+.++..|+ ++|+++|||+|||||+.+..||.++++.++|++||+++.+++...+.... ..||+++++|..
T Consensus 57 ~P~~~a~~l~~L~---l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~ 133 (209)
T PF01135_consen 57 APSMVARMLEALD---LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGS 133 (209)
T ss_dssp -HHHHHHHHHHTT---C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GG
T ss_pred HHHHHHHHHHHHh---cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchh
Confidence 3567777777777 99999999999999999999999999899999999998775444333222 239999999987
Q ss_pred CchhhcccCCCccEEEEcCCCch
Q 024665 203 HPAKYRMLVGMVDVIFSDVAQPD 225 (264)
Q Consensus 203 ~~~~~~~~~~~fD~V~~d~p~~~ 225 (264)
...+ ...+||+|++....+.
T Consensus 134 ~g~~---~~apfD~I~v~~a~~~ 153 (209)
T PF01135_consen 134 EGWP---EEAPFDRIIVTAAVPE 153 (209)
T ss_dssp GTTG---GG-SEEEEEESSBBSS
T ss_pred hccc---cCCCcCEEEEeeccch
Confidence 6442 2358999999877543
No 40
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.21 E-value=2.1e-11 Score=94.28 Aligned_cols=111 Identities=21% Similarity=0.194 Sum_probs=73.2
Q ss_pred CCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc---CCCeEEEEcCCCCchhhcccCCCccEEEEc
Q 024665 144 GARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK---RTNVIPIIEDARHPAKYRMLVGMVDVIFSD 220 (264)
Q Consensus 144 g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~---~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d 220 (264)
|.+|||+|||+|++++.+++.. ..+++++|+++.+++-+...... ..++++++.|+++.... ...++||+|++|
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~-~~~~~~D~Iv~n 77 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEP-LPDGKFDLIVTN 77 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHT-CTTT-EEEEEE-
T ss_pred CCEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhh-ccCceeEEEEEC
Confidence 5689999999999999999885 56999999998775443333332 34799999999886522 235789999999
Q ss_pred CCCchHHHHHHHHHhCCCcHHHHHHHHHHhh-cchhhhhh
Q 024665 221 VAQPDQVCFLCLILFQPIVINNLQSVNNETK-GGIFEFLF 259 (264)
Q Consensus 221 ~p~~~~~~~~~~~~l~~~~~~~l~~~~~~Lk-~g~f~~l~ 259 (264)
+|...... ............+.++.+.|+ +|.+.+++
T Consensus 78 pP~~~~~~--~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 78 PPYGPRSG--DKAALRRLYSRFLEAAARLLKPGGVLVFIT 115 (117)
T ss_dssp -STTSBTT------GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCccccc--cchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 99422100 000111123455777778888 77776654
No 41
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.20 E-value=1.1e-10 Score=110.28 Aligned_cols=107 Identities=25% Similarity=0.152 Sum_probs=81.9
Q ss_pred hHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCC--CeEEEEcCCCC
Q 024665 126 SKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRT--NVIPIIEDARH 203 (264)
Q Consensus 126 s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~--nV~~i~~D~~~ 203 (264)
.+|...++..++ ..++++|||+.||.|+++++||..+ .+|+|+|+++.+++.+.++|+.+. |++++.+|+.+
T Consensus 279 ekl~~~a~~~~~---~~~~~~vlDlYCGvG~f~l~lA~~~---~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~ 352 (432)
T COG2265 279 EKLYETALEWLE---LAGGERVLDLYCGVGTFGLPLAKRV---KKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEE 352 (432)
T ss_pred HHHHHHHHHHHh---hcCCCEEEEeccCCChhhhhhcccC---CEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHH
Confidence 345555555554 7788999999999999999999764 499999999988877777776553 89999999998
Q ss_pred chhhcccCCCccEEEEcCC--CchHHHHHHHHHhCCC
Q 024665 204 PAKYRMLVGMVDVIFSDVA--QPDQVCFLCLILFQPI 238 (264)
Q Consensus 204 ~~~~~~~~~~fD~V~~d~p--~~~~~~~~~~~~l~~~ 238 (264)
+.+.......+|.|++||| --+......+..+.|.
T Consensus 353 ~~~~~~~~~~~d~VvvDPPR~G~~~~~lk~l~~~~p~ 389 (432)
T COG2265 353 FTPAWWEGYKPDVVVVDPPRAGADREVLKQLAKLKPK 389 (432)
T ss_pred HhhhccccCCCCEEEECCCCCCCCHHHHHHHHhcCCC
Confidence 7653212247899999999 3444566667777776
No 42
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.18 E-value=1.1e-10 Score=103.18 Aligned_cols=100 Identities=19% Similarity=0.163 Sum_probs=73.2
Q ss_pred hHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCch
Q 024665 126 SKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPA 205 (264)
Q Consensus 126 s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~ 205 (264)
.+....++..+. +.++.+|||+|||+|.++..++..+ +..+|+++|+|+.|++.. .. .++++++.|+.++.
T Consensus 15 ~~~~~~ll~~l~---~~~~~~vLDlGcG~G~~~~~l~~~~-p~~~v~gvD~s~~~~~~a----~~-~~~~~~~~d~~~~~ 85 (255)
T PRK14103 15 GRPFYDLLARVG---AERARRVVDLGCGPGNLTRYLARRW-PGAVIEALDSSPEMVAAA----RE-RGVDARTGDVRDWK 85 (255)
T ss_pred hCHHHHHHHhCC---CCCCCEEEEEcCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHH----Hh-cCCcEEEcChhhCC
Confidence 333444444433 7788999999999999999999886 567999999999775443 22 37899999997653
Q ss_pred hhcccCCCccEEEEcCC-----CchHHHHHHHHHhCCC
Q 024665 206 KYRMLVGMVDVIFSDVA-----QPDQVCFLCLILFQPI 238 (264)
Q Consensus 206 ~~~~~~~~fD~V~~d~p-----~~~~~~~~~~~~l~~~ 238 (264)
..++||+|+++.. .+........+.++|+
T Consensus 86 ----~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~Lkpg 119 (255)
T PRK14103 86 ----PKPDTDVVVSNAALQWVPEHADLLVRWVDELAPG 119 (255)
T ss_pred ----CCCCceEEEEehhhhhCCCHHHHHHHHHHhCCCC
Confidence 2368999999865 3444555556667776
No 43
>PRK14967 putative methyltransferase; Provisional
Probab=99.18 E-value=1.5e-10 Score=100.32 Aligned_cols=77 Identities=27% Similarity=0.213 Sum_probs=60.2
Q ss_pred CCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC-CCeEEEEcCCCCchhhcccCCCccEEE
Q 024665 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRMLVGMVDVIF 218 (264)
Q Consensus 140 ~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~-~nV~~i~~D~~~~~~~~~~~~~fD~V~ 218 (264)
.++++++|||+|||+|.+++.++.. ...+|+++|+|+.+++...+++... .++++++.|+.+.. ..++||+|+
T Consensus 33 ~~~~~~~vLDlGcG~G~~~~~la~~--~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~----~~~~fD~Vi 106 (223)
T PRK14967 33 GLGPGRRVLDLCTGSGALAVAAAAA--GAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAV----EFRPFDVVV 106 (223)
T ss_pred ccCCCCeEEEecCCHHHHHHHHHHc--CCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhc----cCCCeeEEE
Confidence 4788999999999999999999875 3458999999988765544443322 36889999987642 236899999
Q ss_pred EcCC
Q 024665 219 SDVA 222 (264)
Q Consensus 219 ~d~p 222 (264)
+|+|
T Consensus 107 ~npP 110 (223)
T PRK14967 107 SNPP 110 (223)
T ss_pred ECCC
Confidence 9988
No 44
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=99.17 E-value=1.6e-10 Score=98.68 Aligned_cols=77 Identities=26% Similarity=0.327 Sum_probs=52.7
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHH---HHHhhcCCCeEEEEcCCCCchhhcccCCCccEE
Q 024665 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDL---VNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVI 217 (264)
Q Consensus 141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l---~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V 217 (264)
++++++|||+.||.|.+++.+|.. .....|+|+|++|.+.+.+ ++.|+...+|+++++|++++.. ...+|.|
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~-~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~----~~~~drv 173 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKH-GKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP----EGKFDRV 173 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHH-T-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG-------TT-EEEE
T ss_pred CCcceEEEEccCCccHHHHHHhhh-cCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC----ccccCEE
Confidence 789999999999999999999985 3456899999998775444 4455555579999999988753 4789999
Q ss_pred EEcCC
Q 024665 218 FSDVA 222 (264)
Q Consensus 218 ~~d~p 222 (264)
+++.|
T Consensus 174 im~lp 178 (200)
T PF02475_consen 174 IMNLP 178 (200)
T ss_dssp EE--T
T ss_pred EECCh
Confidence 99977
No 45
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.16 E-value=3.9e-10 Score=99.51 Aligned_cols=103 Identities=21% Similarity=0.220 Sum_probs=64.5
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCC---CeEEEEcCCCCchhhcccCCCccEE
Q 024665 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRT---NVIPIIEDARHPAKYRMLVGMVDVI 217 (264)
Q Consensus 141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~---nV~~i~~D~~~~~~~~~~~~~fD~V 217 (264)
+.++.+|||+|||+|.+++.++.. + ..+|+++|+|+.+++...++...+. ++.+...| .+||+|
T Consensus 117 ~~~~~~VLDiGcGsG~l~i~~~~~-g-~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~-----------~~fD~V 183 (250)
T PRK00517 117 VLPGKTVLDVGCGSGILAIAAAKL-G-AKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGD-----------LKADVI 183 (250)
T ss_pred cCCCCEEEEeCCcHHHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCC-----------CCcCEE
Confidence 568899999999999999887764 3 3479999999988765555443321 12221111 279999
Q ss_pred EEcCCCch--HHHHHHHHHhCCC--------cHHHHHHHHHHhhcchhh
Q 024665 218 FSDVAQPD--QVCFLCLILFQPI--------VINNLQSVNNETKGGIFE 256 (264)
Q Consensus 218 ~~d~p~~~--~~~~~~~~~l~~~--------~~~~l~~~~~~Lk~g~f~ 256 (264)
++|..... .........++|. ...+...+.+.++...|.
T Consensus 184 vani~~~~~~~l~~~~~~~LkpgG~lilsgi~~~~~~~v~~~l~~~Gf~ 232 (250)
T PRK00517 184 VANILANPLLELAPDLARLLKPGGRLILSGILEEQADEVLEAYEEAGFT 232 (250)
T ss_pred EEcCcHHHHHHHHHHHHHhcCCCcEEEEEECcHhhHHHHHHHHHHCCCE
Confidence 99876322 2233445556665 344455555556533343
No 46
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.16 E-value=3.1e-10 Score=100.27 Aligned_cols=93 Identities=13% Similarity=-0.008 Sum_probs=64.7
Q ss_pred hHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCch
Q 024665 126 SKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPA 205 (264)
Q Consensus 126 s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~ 205 (264)
..++..++..+. ...+..+|||+|||+|.+++.++... +..+|+++|+|+.+++.+.+++.. .++++++.|+.+..
T Consensus 71 e~Lv~~~l~~~~--~~~~~~~vLDlg~GsG~i~l~la~~~-~~~~v~~vDis~~al~~A~~N~~~-~~~~~~~~D~~~~l 146 (251)
T TIGR03704 71 EFLVDEAAALAR--PRSGTLVVVDLCCGSGAVGAALAAAL-DGIELHAADIDPAAVRCARRNLAD-AGGTVHEGDLYDAL 146 (251)
T ss_pred HHHHHHHHHhhc--ccCCCCEEEEecCchHHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHH-cCCEEEEeechhhc
Confidence 345554443332 12234689999999999999999875 356899999999887555444433 34689999987643
Q ss_pred hhcccCCCccEEEEcCCC
Q 024665 206 KYRMLVGMVDVIFSDVAQ 223 (264)
Q Consensus 206 ~~~~~~~~fD~V~~d~p~ 223 (264)
.. ...++||+|++|||.
T Consensus 147 ~~-~~~~~fDlVv~NPPy 163 (251)
T TIGR03704 147 PT-ALRGRVDILAANAPY 163 (251)
T ss_pred ch-hcCCCEeEEEECCCC
Confidence 21 123579999999993
No 47
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.16 E-value=6.2e-10 Score=93.71 Aligned_cols=91 Identities=20% Similarity=0.126 Sum_probs=64.0
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC--CCeEEEEcCCCCchhhcccCCCccEEEEc
Q 024665 143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIFSD 220 (264)
Q Consensus 143 ~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~--~nV~~i~~D~~~~~~~~~~~~~fD~V~~d 220 (264)
++.+|||+|||+|.+++.+|.. .+.++|+++|.|+.+++.+.+.+.+. .||+++++|+.+.. ..++||+|+++
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~-~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~----~~~~fD~I~s~ 116 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIA-RPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ----HEEQFDVITSR 116 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHH-CCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc----ccCCccEEEeh
Confidence 4789999999999999999865 46789999999987754443333222 37999999998753 24689999998
Q ss_pred CC-CchHHHHHHHHHhCCC
Q 024665 221 VA-QPDQVCFLCLILFQPI 238 (264)
Q Consensus 221 ~p-~~~~~~~~~~~~l~~~ 238 (264)
.- ..........+.++|.
T Consensus 117 ~~~~~~~~~~~~~~~Lkpg 135 (181)
T TIGR00138 117 ALASLNVLLELTLNLLKVG 135 (181)
T ss_pred hhhCHHHHHHHHHHhcCCC
Confidence 52 1222223334445555
No 48
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.15 E-value=3.8e-10 Score=95.79 Aligned_cols=82 Identities=17% Similarity=0.159 Sum_probs=64.3
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC--CCeEEEEcCCCCchhhcccCCCccEEEEc
Q 024665 143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIFSD 220 (264)
Q Consensus 143 ~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~--~nV~~i~~D~~~~~~~~~~~~~fD~V~~d 220 (264)
+..+|||+|||+|.++..+|... |...|+++|+++.+++.+.+.+... .||+++++|+.++.........+|.|+++
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~-p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~ 94 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQN-PDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLN 94 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEE
Confidence 55699999999999999999875 6779999999998876665554432 39999999998754321223489999999
Q ss_pred CCCch
Q 024665 221 VAQPD 225 (264)
Q Consensus 221 ~p~~~ 225 (264)
.|.||
T Consensus 95 ~pdpw 99 (194)
T TIGR00091 95 FPDPW 99 (194)
T ss_pred CCCcC
Confidence 98765
No 49
>PLN02244 tocopherol O-methyltransferase
Probab=99.15 E-value=4.9e-10 Score=103.18 Aligned_cols=92 Identities=15% Similarity=0.136 Sum_probs=67.6
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC---CCeEEEEcCCCCchhhcccCCCccEEE
Q 024665 142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDVIF 218 (264)
Q Consensus 142 ~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~---~nV~~i~~D~~~~~~~~~~~~~fD~V~ 218 (264)
+++++|||+|||+|.++..+++.. ..+|++||+|+.+++...+.+... .+|+++++|+.+.+ ...+.||+|+
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~--g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~---~~~~~FD~V~ 191 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY--GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQP---FEDGQFDLVW 191 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCC---CCCCCccEEE
Confidence 678999999999999999999875 458999999998876655544332 47999999998754 2457899999
Q ss_pred EcCC-----CchHHHHHHHHHhCCC
Q 024665 219 SDVA-----QPDQVCFLCLILFQPI 238 (264)
Q Consensus 219 ~d~p-----~~~~~~~~~~~~l~~~ 238 (264)
+... .+..........++|+
T Consensus 192 s~~~~~h~~d~~~~l~e~~rvLkpG 216 (340)
T PLN02244 192 SMESGEHMPDKRKFVQELARVAAPG 216 (340)
T ss_pred ECCchhccCCHHHHHHHHHHHcCCC
Confidence 8543 2223333444555554
No 50
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.15 E-value=2.5e-10 Score=94.74 Aligned_cols=78 Identities=19% Similarity=0.173 Sum_probs=63.9
Q ss_pred CCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEE
Q 024665 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFS 219 (264)
Q Consensus 140 ~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~ 219 (264)
.+.++++|||+|||+|.++..+++. ..+|+++|+++.+++.+.+......|++++++|+.+... ....||+|++
T Consensus 10 ~~~~~~~vLEiG~G~G~lt~~l~~~---~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~---~~~~~d~vi~ 83 (169)
T smart00650 10 NLRPGDTVLEIGPGKGALTEELLER---AARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDL---PKLQPYKVVG 83 (169)
T ss_pred CCCCcCEEEEECCCccHHHHHHHhc---CCeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCc---cccCCCEEEE
Confidence 4788999999999999999999987 358999999998877666555444589999999988642 2236999999
Q ss_pred cCCC
Q 024665 220 DVAQ 223 (264)
Q Consensus 220 d~p~ 223 (264)
|+|.
T Consensus 84 n~Py 87 (169)
T smart00650 84 NLPY 87 (169)
T ss_pred CCCc
Confidence 9994
No 51
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.15 E-value=3.4e-10 Score=96.64 Aligned_cols=93 Identities=14% Similarity=0.020 Sum_probs=64.9
Q ss_pred chHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC--CCeEEEEcCCC
Q 024665 125 RSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDAR 202 (264)
Q Consensus 125 ~s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~--~nV~~i~~D~~ 202 (264)
...+...++..+. ...++.+|||+|||+|.+++.++.. ...+|++||+++++++.+.++.... .|+++++.|+.
T Consensus 37 ~d~v~e~l~~~l~--~~~~~~~vLDl~~GsG~l~l~~lsr--~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~ 112 (199)
T PRK10909 37 TDRVRETLFNWLA--PVIVDARCLDCFAGSGALGLEALSR--YAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNAL 112 (199)
T ss_pred CHHHHHHHHHHHh--hhcCCCEEEEcCCCccHHHHHHHHc--CCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHH
Confidence 4455444554443 2356789999999999999975544 2459999999988765544433322 37999999987
Q ss_pred CchhhcccCCCccEEEEcCCC
Q 024665 203 HPAKYRMLVGMVDVIFSDVAQ 223 (264)
Q Consensus 203 ~~~~~~~~~~~fD~V~~d~p~ 223 (264)
+.... ...+||+|++|||.
T Consensus 113 ~~l~~--~~~~fDlV~~DPPy 131 (199)
T PRK10909 113 SFLAQ--PGTPHNVVFVDPPF 131 (199)
T ss_pred HHHhh--cCCCceEEEECCCC
Confidence 64421 23479999999993
No 52
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.14 E-value=7.1e-10 Score=99.72 Aligned_cols=76 Identities=22% Similarity=0.146 Sum_probs=60.1
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC---CCeEEEEcCCCCchhhcccCCCccEEE
Q 024665 142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDVIF 218 (264)
Q Consensus 142 ~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~---~nV~~i~~D~~~~~~~~~~~~~fD~V~ 218 (264)
++..+|||+|||+|.+++.++... +..+|+++|+|+.+++.+.+++... .+|++++.|+.+.. ...+||+|+
T Consensus 120 ~~~~~vLDlG~GsG~i~~~la~~~-~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~----~~~~fD~Iv 194 (284)
T TIGR03533 120 EPVKRILDLCTGSGCIAIACAYAF-PEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAAL----PGRKYDLIV 194 (284)
T ss_pred CCCCEEEEEeCchhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhcc----CCCCccEEE
Confidence 445799999999999999999875 4679999999988865555544332 37999999986532 124799999
Q ss_pred EcCC
Q 024665 219 SDVA 222 (264)
Q Consensus 219 ~d~p 222 (264)
+|||
T Consensus 195 ~NPP 198 (284)
T TIGR03533 195 SNPP 198 (284)
T ss_pred ECCC
Confidence 9999
No 53
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.14 E-value=7e-10 Score=98.65 Aligned_cols=76 Identities=13% Similarity=0.141 Sum_probs=61.4
Q ss_pred CCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEE
Q 024665 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFS 219 (264)
Q Consensus 140 ~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~ 219 (264)
.++++.+|||+|||+|..+..++... .++|+++|+|+.++..+.+.+....+|.+++.|+.+.+ ...++||+|++
T Consensus 49 ~l~~~~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~---~~~~~FD~V~s 123 (263)
T PTZ00098 49 ELNENSKVLDIGSGLGGGCKYINEKY--GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKD---FPENTFDMIYS 123 (263)
T ss_pred CCCCCCEEEEEcCCCChhhHHHHhhc--CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCC---CCCCCeEEEEE
Confidence 48999999999999999999998763 46899999999887666655544458999999997643 23468999998
Q ss_pred c
Q 024665 220 D 220 (264)
Q Consensus 220 d 220 (264)
.
T Consensus 124 ~ 124 (263)
T PTZ00098 124 R 124 (263)
T ss_pred h
Confidence 4
No 54
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.13 E-value=1.6e-09 Score=84.01 Aligned_cols=100 Identities=24% Similarity=0.350 Sum_probs=71.4
Q ss_pred CCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc--CCCeEEEEcCCCCchhhcccCCCccEE
Q 024665 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK--RTNVIPIIEDARHPAKYRMLVGMVDVI 217 (264)
Q Consensus 140 ~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~--~~nV~~i~~D~~~~~~~~~~~~~fD~V 217 (264)
.+.++++|||+|||+|.++..+++.+ +..+|+++|+|+.+++.+.+.... ..+++++..|+.+... ...++||+|
T Consensus 16 ~~~~~~~vldlG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~D~v 92 (124)
T TIGR02469 16 RLRPGDVLWDIGAGSGSITIEAARLV-PNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALE--DSLPEPDRV 92 (124)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHC-CCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccCh--hhcCCCCEE
Confidence 47788899999999999999999986 357999999998776555443332 2379999999875322 133689999
Q ss_pred EEcCCCchHHHHHHHHHhCCCcHHHHHHHHHHhh-cchh
Q 024665 218 FSDVAQPDQVCFLCLILFQPIVINNLQSVNNETK-GGIF 255 (264)
Q Consensus 218 ~~d~p~~~~~~~~~~~~l~~~~~~~l~~~~~~Lk-~g~f 255 (264)
+++.+... ....+..+.+.|+ +|.|
T Consensus 93 ~~~~~~~~-------------~~~~l~~~~~~Lk~gG~l 118 (124)
T TIGR02469 93 FIGGSGGL-------------LQEILEAIWRRLRPGGRI 118 (124)
T ss_pred EECCcchh-------------HHHHHHHHHHHcCCCCEE
Confidence 98753211 1245667777777 5554
No 55
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.13 E-value=2.2e-09 Score=90.43 Aligned_cols=105 Identities=20% Similarity=0.203 Sum_probs=73.9
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC--CCeEEEEcCCCCchhhcccCCCccEEE
Q 024665 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIF 218 (264)
Q Consensus 141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~--~nV~~i~~D~~~~~~~~~~~~~fD~V~ 218 (264)
+.++.+|||+|||+|.+++.++... +..+|+++|+|+.+++.+.+..... .++++++.|+... +..+||+|+
T Consensus 29 ~~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~-----~~~~~D~v~ 102 (187)
T PRK08287 29 LHRAKHLIDVGAGTGSVSIEAALQF-PSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIE-----LPGKADAIF 102 (187)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhh-----cCcCCCEEE
Confidence 7788999999999999999999874 6789999999988865555443322 3799999997432 235899999
Q ss_pred EcCC--CchHHHHHHHHHhCCC--------cHHHHHHHHHHhh
Q 024665 219 SDVA--QPDQVCFLCLILFQPI--------VINNLQSVNNETK 251 (264)
Q Consensus 219 ~d~p--~~~~~~~~~~~~l~~~--------~~~~l~~~~~~Lk 251 (264)
++.. ..........+.++|. ......++.+.++
T Consensus 103 ~~~~~~~~~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~ 145 (187)
T PRK08287 103 IGGSGGNLTAIIDWSLAHLHPGGRLVLTFILLENLHSALAHLE 145 (187)
T ss_pred ECCCccCHHHHHHHHHHhcCCCeEEEEEEecHhhHHHHHHHHH
Confidence 9765 2333334455666766 2334455555555
No 56
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.13 E-value=1.1e-09 Score=92.72 Aligned_cols=93 Identities=24% Similarity=0.221 Sum_probs=67.8
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC--CCeEEEEcCCCCchhhcccCCCccEEE
Q 024665 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIF 218 (264)
Q Consensus 141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~--~nV~~i~~D~~~~~~~~~~~~~fD~V~ 218 (264)
++++.+|||+|||+|..++.++... +.++|+++|+|+.+++.+.+.+... .|+++++.|+.+... .++||+|+
T Consensus 43 l~~g~~VLDiGcGtG~~al~la~~~-~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~----~~~fDlV~ 117 (187)
T PRK00107 43 LPGGERVLDVGSGAGFPGIPLAIAR-PELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ----EEKFDVVT 117 (187)
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC----CCCccEEE
Confidence 5568999999999999999999864 6789999999988765554444332 369999999987542 46899999
Q ss_pred EcCC-CchHHHHHHHHHhCCC
Q 024665 219 SDVA-QPDQVCFLCLILFQPI 238 (264)
Q Consensus 219 ~d~p-~~~~~~~~~~~~l~~~ 238 (264)
++.- .+........+.++|.
T Consensus 118 ~~~~~~~~~~l~~~~~~LkpG 138 (187)
T PRK00107 118 SRAVASLSDLVELCLPLLKPG 138 (187)
T ss_pred EccccCHHHHHHHHHHhcCCC
Confidence 9753 2333333444555555
No 57
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.12 E-value=3.2e-10 Score=107.96 Aligned_cols=106 Identities=21% Similarity=0.169 Sum_probs=74.5
Q ss_pred HHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC--CCeEEEEcCCCCc
Q 024665 127 KLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHP 204 (264)
Q Consensus 127 ~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~--~nV~~i~~D~~~~ 204 (264)
.+...++..+. +.++++|||+|||+|.+++.+|... .+|+|+|+|+.|++.+.+++..+ .|++++++|+.+.
T Consensus 284 ~l~~~vl~~l~---~~~~~~VLDlgcGtG~~sl~la~~~---~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~ 357 (443)
T PRK13168 284 KMVARALEWLD---PQPGDRVLDLFCGLGNFTLPLARQA---AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEED 357 (443)
T ss_pred HHHHHHHHHhc---CCCCCEEEEEeccCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHh
Confidence 34444544443 7788999999999999999999874 48999999998877766655433 3899999999764
Q ss_pred hh-hcccCCCccEEEEcCCCch-HHHHHHHHHhCCC
Q 024665 205 AK-YRMLVGMVDVIFSDVAQPD-QVCFLCLILFQPI 238 (264)
Q Consensus 205 ~~-~~~~~~~fD~V~~d~p~~~-~~~~~~~~~l~~~ 238 (264)
.. ......+||+|++|||... ......+..+.+.
T Consensus 358 l~~~~~~~~~fD~Vi~dPPr~g~~~~~~~l~~~~~~ 393 (443)
T PRK13168 358 FTDQPWALGGFDKVLLDPPRAGAAEVMQALAKLGPK 393 (443)
T ss_pred hhhhhhhcCCCCEEEECcCCcChHHHHHHHHhcCCC
Confidence 21 1112357999999999432 2223444555555
No 58
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.11 E-value=3.3e-10 Score=99.75 Aligned_cols=77 Identities=21% Similarity=0.216 Sum_probs=61.2
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhhc---CCCeEEEEcCCCCchhhcccCCCccE
Q 024665 141 IKPGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKK---RTNVIPIIEDARHPAKYRMLVGMVDV 216 (264)
Q Consensus 141 l~~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~~---~~nV~~i~~D~~~~~~~~~~~~~fD~ 216 (264)
+.++.+|||+|||+|..+..++..+ .+..+|+++|+|+.|++...+.... ..+|+++++|+.+.+ ...+|+
T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~-----~~~~D~ 128 (247)
T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIA-----IENASM 128 (247)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCC-----CCCCCE
Confidence 5688999999999999999998864 4678999999999987666555432 237999999998754 246899
Q ss_pred EEEcCC
Q 024665 217 IFSDVA 222 (264)
Q Consensus 217 V~~d~p 222 (264)
|+++..
T Consensus 129 vv~~~~ 134 (247)
T PRK15451 129 VVLNFT 134 (247)
T ss_pred EehhhH
Confidence 997644
No 59
>PRK08317 hypothetical protein; Provisional
Probab=99.11 E-value=1.5e-09 Score=93.46 Aligned_cols=108 Identities=23% Similarity=0.242 Sum_probs=76.5
Q ss_pred chHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHH-hhcCCCeEEEEcCCCC
Q 024665 125 RSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNM-AKKRTNVIPIIEDARH 203 (264)
Q Consensus 125 ~s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~-a~~~~nV~~i~~D~~~ 203 (264)
...+...++..+ .+.++++|||+|||+|.++..+++.+.+.++|+++|+++.+++...+. .....++++++.|+.+
T Consensus 4 ~~~~~~~~~~~~---~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~ 80 (241)
T PRK08317 4 FRRYRARTFELL---AVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADG 80 (241)
T ss_pred HHHHHHHHHHHc---CCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEeccccc
Confidence 333344444333 488999999999999999999999886778999999998776554443 1223489999999876
Q ss_pred chhhcccCCCccEEEEcCC-----CchHHHHHHHHHhCCC
Q 024665 204 PAKYRMLVGMVDVIFSDVA-----QPDQVCFLCLILFQPI 238 (264)
Q Consensus 204 ~~~~~~~~~~fD~V~~d~p-----~~~~~~~~~~~~l~~~ 238 (264)
.+ .....||+|+++.. .+.+......+.++|.
T Consensus 81 ~~---~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~g 117 (241)
T PRK08317 81 LP---FPDGSFDAVRSDRVLQHLEDPARALAEIARVLRPG 117 (241)
T ss_pred CC---CCCCCceEEEEechhhccCCHHHHHHHHHHHhcCC
Confidence 54 23468999998644 4445555555556655
No 60
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.11 E-value=6e-10 Score=98.27 Aligned_cols=101 Identities=15% Similarity=0.129 Sum_probs=72.7
Q ss_pred HHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchh
Q 024665 127 KLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAK 206 (264)
Q Consensus 127 ~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~ 206 (264)
+.+..++..+ .++++++|||+|||+|.++..+++.+ +..+|+++|+|+.+++.+.+. ..++.+++.|+.+..
T Consensus 18 ~~~~~ll~~~---~~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~i~~a~~~---~~~~~~~~~d~~~~~- 89 (258)
T PRK01683 18 RPARDLLARV---PLENPRYVVDLGCGPGNSTELLVERW-PAARITGIDSSPAMLAEARSR---LPDCQFVEADIASWQ- 89 (258)
T ss_pred cHHHHHHhhC---CCcCCCEEEEEcccCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHh---CCCCeEEECchhccC-
Confidence 3455555444 37889999999999999999999886 567999999999876443332 247899999987653
Q ss_pred hcccCCCccEEEEcCC-----CchHHHHHHHHHhCCC
Q 024665 207 YRMLVGMVDVIFSDVA-----QPDQVCFLCLILFQPI 238 (264)
Q Consensus 207 ~~~~~~~fD~V~~d~p-----~~~~~~~~~~~~l~~~ 238 (264)
...+||+|+++.. .+..........++|+
T Consensus 90 ---~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~Lkpg 123 (258)
T PRK01683 90 ---PPQALDLIFANASLQWLPDHLELFPRLVSLLAPG 123 (258)
T ss_pred ---CCCCccEEEEccChhhCCCHHHHHHHHHHhcCCC
Confidence 2358999999876 2334444455555555
No 61
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=8.1e-10 Score=94.20 Aligned_cols=90 Identities=24% Similarity=0.283 Sum_probs=70.0
Q ss_pred hHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC--CCeEEEEcCCCC
Q 024665 126 SKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARH 203 (264)
Q Consensus 126 s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~--~nV~~i~~D~~~ 203 (264)
+.+.+.++..|+ ++|+++|||+|||||+.+..||++++ +|+++|+.+..++.+.++.... .||+++++|...
T Consensus 58 P~~vA~m~~~L~---~~~g~~VLEIGtGsGY~aAvla~l~~---~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~ 131 (209)
T COG2518 58 PHMVARMLQLLE---LKPGDRVLEIGTGSGYQAAVLARLVG---RVVSIERIEELAEQARRNLETLGYENVTVRHGDGSK 131 (209)
T ss_pred cHHHHHHHHHhC---CCCCCeEEEECCCchHHHHHHHHHhC---eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCccc
Confidence 456666776666 99999999999999999999999976 9999999987654443332221 389999999987
Q ss_pred chhhcccCCCccEEEEcCCCc
Q 024665 204 PAKYRMLVGMVDVIFSDVAQP 224 (264)
Q Consensus 204 ~~~~~~~~~~fD~V~~d~p~~ 224 (264)
-.+ ...+||+|++....+
T Consensus 132 G~~---~~aPyD~I~Vtaaa~ 149 (209)
T COG2518 132 GWP---EEAPYDRIIVTAAAP 149 (209)
T ss_pred CCC---CCCCcCEEEEeeccC
Confidence 542 236899999887743
No 62
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.10 E-value=1.2e-09 Score=93.46 Aligned_cols=82 Identities=16% Similarity=0.183 Sum_probs=63.0
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC--CCeEEEEcCC-CCchhhcccCCCccEEE
Q 024665 142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDA-RHPAKYRMLVGMVDVIF 218 (264)
Q Consensus 142 ~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~--~nV~~i~~D~-~~~~~~~~~~~~fD~V~ 218 (264)
.+..+|||+|||+|.++..+++.. +..+|++||+|+.+++.+.+..... .|+++++.|+ ..+... .....||+|+
T Consensus 39 ~~~~~VLDiGcGtG~~~~~la~~~-p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~-~~~~~~D~V~ 116 (202)
T PRK00121 39 NDAPIHLEIGFGKGEFLVEMAKAN-PDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDM-FPDGSLDRIY 116 (202)
T ss_pred CCCCeEEEEccCCCHHHHHHHHHC-CCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHH-cCccccceEE
Confidence 367899999999999999999875 5678999999998876666554332 4899999999 443321 2346899999
Q ss_pred EcCCCch
Q 024665 219 SDVAQPD 225 (264)
Q Consensus 219 ~d~p~~~ 225 (264)
++.+.|+
T Consensus 117 ~~~~~p~ 123 (202)
T PRK00121 117 LNFPDPW 123 (202)
T ss_pred EECCCCC
Confidence 9877543
No 63
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.10 E-value=8.9e-10 Score=103.18 Aligned_cols=79 Identities=22% Similarity=0.131 Sum_probs=61.6
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC-CCeEEEEcCCCCchhhcccCCCccEEEE
Q 024665 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRMLVGMVDVIFS 219 (264)
Q Consensus 141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~-~nV~~i~~D~~~~~~~~~~~~~fD~V~~ 219 (264)
++++.+|||+|||+|.+++.++... +..+|+++|+|+.+++.+.+++... .+++++++|+.+... ....+||+|++
T Consensus 249 l~~~~rVLDLGcGSG~IaiaLA~~~-p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l--~~~~~FDLIVS 325 (423)
T PRK14966 249 LPENGRVWDLGTGSGAVAVTVALER-PDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDM--PSEGKWDIIVS 325 (423)
T ss_pred cCCCCEEEEEeChhhHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhcccc--ccCCCccEEEE
Confidence 3466799999999999999998764 5679999999998876665555433 379999999876421 11347999999
Q ss_pred cCC
Q 024665 220 DVA 222 (264)
Q Consensus 220 d~p 222 (264)
|||
T Consensus 326 NPP 328 (423)
T PRK14966 326 NPP 328 (423)
T ss_pred CCC
Confidence 999
No 64
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=99.10 E-value=9.8e-10 Score=100.45 Aligned_cols=152 Identities=23% Similarity=0.259 Sum_probs=97.2
Q ss_pred eeeeccee-eceEEEecCCcccccccccCCCceeeeee--EEEEecCCCceecceEeCCcchHHHHHHHhcccccCCCCC
Q 024665 68 KVVVEPHR-HEGVFIAKGKEDALVTKNLVAGEAVYNEK--RISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPG 144 (264)
Q Consensus 68 k~~i~~~~-~~g~~~~~~~~d~l~~~~~~~g~~vy~e~--~~~v~~~~~~~~~yr~~~p~~s~l~~~il~~l~~~~l~~g 144 (264)
|-++..++ ..|.|..+. -+.|...+ ..++++.|+ ++.++- +++. |+|.- +.+=...++ ..++|
T Consensus 124 k~V~~k~~~v~G~~R~~~-le~laGe~--~teTihrE~G~~f~vD~---~Kv~---Fsprl---~~ER~Rva~--~v~~G 189 (341)
T COG2520 124 KAVLLKEGPVAGEFRVPR-LEVLAGER--RTETIHRENGCRFKVDV---AKVY---FSPRL---STERARVAE--LVKEG 189 (341)
T ss_pred eEEEEecCccCCeEeccc-eEEeecCC--CceEEEecCCEEEEEch---HHeE---ECCCc---hHHHHHHHh--hhcCC
Confidence 34444444 677776642 22344444 345566554 223222 3322 44433 333322222 25679
Q ss_pred CEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCC---CeEEEEcCCCCchhhcccCCCccEEEEcC
Q 024665 145 ARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRT---NVIPIIEDARHPAKYRMLVGMVDVIFSDV 221 (264)
Q Consensus 145 ~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~---nV~~i~~D~~~~~~~~~~~~~fD~V~~d~ 221 (264)
++|||+.||.|.+|+.+|..- ...|||+|++|.+.+.+.++++++. .|+++++|+++.... ...+|.|+++.
T Consensus 190 E~V~DmFAGVGpfsi~~Ak~g--~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~---~~~aDrIim~~ 264 (341)
T COG2520 190 ETVLDMFAGVGPFSIPIAKKG--RPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPE---LGVADRIIMGL 264 (341)
T ss_pred CEEEEccCCcccchhhhhhcC--CceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhc---cccCCEEEeCC
Confidence 999999999999999999883 3349999999988766666655543 599999999987632 26899999999
Q ss_pred CC-chHHHHHHHHHhCCC
Q 024665 222 AQ-PDQVCFLCLILFQPI 238 (264)
Q Consensus 222 p~-~~~~~~~~~~~l~~~ 238 (264)
|. .++....++..++..
T Consensus 265 p~~a~~fl~~A~~~~k~~ 282 (341)
T COG2520 265 PKSAHEFLPLALELLKDG 282 (341)
T ss_pred CCcchhhHHHHHHHhhcC
Confidence 83 455556666665555
No 65
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.10 E-value=1.7e-10 Score=103.11 Aligned_cols=76 Identities=22% Similarity=0.264 Sum_probs=51.7
Q ss_pred cccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC---CCeEEEEcCCCCchhhcccCCC
Q 024665 137 DNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGM 213 (264)
Q Consensus 137 ~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~---~nV~~i~~D~~~~~~~~~~~~~ 213 (264)
+++.++||++|||+|||.|.+++.+|+.. .++|++|.+|+...+.+.+.+... .+|++.+.|.+++. .+
T Consensus 56 ~~~~l~~G~~vLDiGcGwG~~~~~~a~~~--g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~------~~ 127 (273)
T PF02353_consen 56 EKLGLKPGDRVLDIGCGWGGLAIYAAERY--GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLP------GK 127 (273)
T ss_dssp TTTT--TT-EEEEES-TTSHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG---------S
T ss_pred HHhCCCCCCEEEEeCCCccHHHHHHHHHc--CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccC------CC
Confidence 44459999999999999999999999996 468999999976655554444433 37999999987754 49
Q ss_pred ccEEEEc
Q 024665 214 VDVIFSD 220 (264)
Q Consensus 214 fD~V~~d 220 (264)
||.|++-
T Consensus 128 fD~IvSi 134 (273)
T PF02353_consen 128 FDRIVSI 134 (273)
T ss_dssp -SEEEEE
T ss_pred CCEEEEE
Confidence 9999974
No 66
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.09 E-value=4.4e-09 Score=89.21 Aligned_cols=95 Identities=19% Similarity=0.208 Sum_probs=69.2
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC--CCeEEEEcCCCCchhhcccCCCccEEE
Q 024665 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIF 218 (264)
Q Consensus 141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~--~nV~~i~~D~~~~~~~~~~~~~fD~V~ 218 (264)
++++++|||+|||+|.+++.++... +.++|+++|+|+.+++.+.++.... .|+++++.|+.+... .+...+|.|+
T Consensus 38 ~~~~~~VLDiG~G~G~~~~~la~~~-~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~--~~~~~~d~v~ 114 (196)
T PRK07402 38 LEPDSVLWDIGAGTGTIPVEAGLLC-PKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLA--QLAPAPDRVC 114 (196)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHh--hCCCCCCEEE
Confidence 7889999999999999999998764 5679999999998876655544332 479999999865321 2334578888
Q ss_pred EcCCCc-hHHHHHHHHHhCCC
Q 024665 219 SDVAQP-DQVCFLCLILFQPI 238 (264)
Q Consensus 219 ~d~p~~-~~~~~~~~~~l~~~ 238 (264)
++...+ ..........++|.
T Consensus 115 ~~~~~~~~~~l~~~~~~Lkpg 135 (196)
T PRK07402 115 IEGGRPIKEILQAVWQYLKPG 135 (196)
T ss_pred EECCcCHHHHHHHHHHhcCCC
Confidence 876533 34444555566776
No 67
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.09 E-value=1e-09 Score=97.65 Aligned_cols=96 Identities=27% Similarity=0.318 Sum_probs=72.6
Q ss_pred CCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC--CCeEEEEcCCCCchhhcccCCCccEE
Q 024665 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVI 217 (264)
Q Consensus 140 ~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~--~nV~~i~~D~~~~~~~~~~~~~fD~V 217 (264)
.++++++|||+|||+|.+++.++..+++.++|+++|+++.+++.+.+..... .+++++++|+.+++ ...+.||+|
T Consensus 74 ~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~---~~~~~fD~V 150 (272)
T PRK11873 74 ELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALP---VADNSVDVI 150 (272)
T ss_pred cCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCC---CCCCceeEE
Confidence 4789999999999999999999988888889999999998865555443322 48999999987754 234589999
Q ss_pred EEcCC-----CchHHHHHHHHHhCCC
Q 024665 218 FSDVA-----QPDQVCFLCLILFQPI 238 (264)
Q Consensus 218 ~~d~p-----~~~~~~~~~~~~l~~~ 238 (264)
+++.. .+..........++|+
T Consensus 151 i~~~v~~~~~d~~~~l~~~~r~LkpG 176 (272)
T PRK11873 151 ISNCVINLSPDKERVFKEAFRVLKPG 176 (272)
T ss_pred EEcCcccCCCCHHHHHHHHHHHcCCC
Confidence 98754 3334455556666666
No 68
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.08 E-value=9.3e-10 Score=92.01 Aligned_cols=74 Identities=18% Similarity=0.187 Sum_probs=58.4
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC-CCeEEEEcCCCCchhhcccCCCccEEEE
Q 024665 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRMLVGMVDVIFS 219 (264)
Q Consensus 141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~-~nV~~i~~D~~~~~~~~~~~~~fD~V~~ 219 (264)
..++.+|||+|||+|.++..++... . +|+++|+|+.+++.+.++.... .++++++.|+.+.. .++||+|++
T Consensus 17 ~~~~~~vLdlG~G~G~~~~~l~~~~--~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~-----~~~fD~Vi~ 88 (179)
T TIGR00537 17 ELKPDDVLEIGAGTGLVAIRLKGKG--K-CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGV-----RGKFDVILF 88 (179)
T ss_pred hcCCCeEEEeCCChhHHHHHHHhcC--C-EEEEEECCHHHHHHHHHHHHHcCCceEEEEccccccc-----CCcccEEEE
Confidence 4556799999999999999999873 2 8999999998876555444322 37899999987643 358999999
Q ss_pred cCC
Q 024665 220 DVA 222 (264)
Q Consensus 220 d~p 222 (264)
|+|
T Consensus 89 n~p 91 (179)
T TIGR00537 89 NPP 91 (179)
T ss_pred CCC
Confidence 998
No 69
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.08 E-value=9e-10 Score=96.26 Aligned_cols=94 Identities=14% Similarity=0.167 Sum_probs=68.3
Q ss_pred CCCCCCEEEEEcccCChHHHHHHHHhC-CCCEEEEEeCChHHHHHHHHHhhc---CCCeEEEEcCCCCchhhcccCCCcc
Q 024665 140 WIKPGARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKK---RTNVIPIIEDARHPAKYRMLVGMVD 215 (264)
Q Consensus 140 ~l~~g~~VLDlG~G~G~~s~~la~~~~-~~g~V~avD~s~~~~~~l~~~a~~---~~nV~~i~~D~~~~~~~~~~~~~fD 215 (264)
.+.++.+|||+|||+|.++..+++.+. +..+|+++|+|+.|++.+.+.... ..+++++++|+.+.+ ...+|
T Consensus 50 ~~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~~~d 124 (239)
T TIGR00740 50 FVTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVE-----IKNAS 124 (239)
T ss_pred hCCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC-----CCCCC
Confidence 356888999999999999999998753 678999999999887665554332 237999999998754 24689
Q ss_pred EEEEcCC---C----chHHHHHHHHHhCCC
Q 024665 216 VIFSDVA---Q----PDQVCFLCLILFQPI 238 (264)
Q Consensus 216 ~V~~d~p---~----~~~~~~~~~~~l~~~ 238 (264)
+|++..+ . +........+.++|+
T Consensus 125 ~v~~~~~l~~~~~~~~~~~l~~i~~~Lkpg 154 (239)
T TIGR00740 125 MVILNFTLQFLPPEDRIALLTKIYEGLNPN 154 (239)
T ss_pred EEeeecchhhCCHHHHHHHHHHHHHhcCCC
Confidence 9888755 1 123334445556665
No 70
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=99.08 E-value=2.3e-09 Score=95.10 Aligned_cols=86 Identities=20% Similarity=0.212 Sum_probs=68.5
Q ss_pred HHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchh
Q 024665 127 KLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAK 206 (264)
Q Consensus 127 ~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~ 206 (264)
.++..++..++ +.++++|||+|||+|.+|..+++.. .+|+++|+++++++.+.+......|++++++|+.+...
T Consensus 16 ~~~~~iv~~~~---~~~~~~VLEIG~G~G~lt~~L~~~~---~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~ 89 (258)
T PRK14896 16 RVVDRIVEYAE---DTDGDPVLEIGPGKGALTDELAKRA---KKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDL 89 (258)
T ss_pred HHHHHHHHhcC---CCCcCeEEEEeCccCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCc
Confidence 45555655444 7889999999999999999999882 48999999998877766554434689999999987541
Q ss_pred hcccCCCccEEEEcCCC
Q 024665 207 YRMLVGMVDVIFSDVAQ 223 (264)
Q Consensus 207 ~~~~~~~fD~V~~d~p~ 223 (264)
..||.|++|+|.
T Consensus 90 -----~~~d~Vv~NlPy 101 (258)
T PRK14896 90 -----PEFNKVVSNLPY 101 (258)
T ss_pred -----hhceEEEEcCCc
Confidence 358999999993
No 71
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.07 E-value=2.1e-09 Score=98.21 Aligned_cols=92 Identities=28% Similarity=0.367 Sum_probs=69.8
Q ss_pred hHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC--CCeEEEEcCCCC
Q 024665 126 SKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARH 203 (264)
Q Consensus 126 s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~--~nV~~i~~D~~~ 203 (264)
+.+.+.++..++ ++++++|||+|||+|.++..+|+.++..++|+++|+++.+++.+.+..... .||+++++|+.+
T Consensus 66 p~l~a~ll~~L~---i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~ 142 (322)
T PRK13943 66 PSLMALFMEWVG---LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYY 142 (322)
T ss_pred HHHHHHHHHhcC---CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhh
Confidence 445555555544 889999999999999999999999866678999999998865554443322 489999999876
Q ss_pred chhhcccCCCccEEEEcCCC
Q 024665 204 PAKYRMLVGMVDVIFSDVAQ 223 (264)
Q Consensus 204 ~~~~~~~~~~fD~V~~d~p~ 223 (264)
... ....||+|+++...
T Consensus 143 ~~~---~~~~fD~Ii~~~g~ 159 (322)
T PRK13943 143 GVP---EFAPYDVIFVTVGV 159 (322)
T ss_pred ccc---ccCCccEEEECCch
Confidence 542 12579999998663
No 72
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.07 E-value=1.7e-09 Score=91.15 Aligned_cols=74 Identities=38% Similarity=0.385 Sum_probs=58.6
Q ss_pred CCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhh-----cccCCCc
Q 024665 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKY-----RMLVGMV 214 (264)
Q Consensus 140 ~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~-----~~~~~~f 214 (264)
.++++++|||+|||+|.++..++..+.+.++|+++|+|+.+ ..+++++++.|+.+.... ....+.|
T Consensus 29 ~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~---------~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~ 99 (188)
T TIGR00438 29 LIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK---------PIENVDFIRGDFTDEEVLNKIRERVGDDKV 99 (188)
T ss_pred ccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc---------cCCCceEEEeeCCChhHHHHHHHHhCCCCc
Confidence 47899999999999999999999988767799999999732 235789999998774311 0123579
Q ss_pred cEEEEcCC
Q 024665 215 DVIFSDVA 222 (264)
Q Consensus 215 D~V~~d~p 222 (264)
|+|++|.+
T Consensus 100 D~V~~~~~ 107 (188)
T TIGR00438 100 DVVMSDAA 107 (188)
T ss_pred cEEEcCCC
Confidence 99999864
No 73
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.07 E-value=8.7e-10 Score=102.61 Aligned_cols=78 Identities=13% Similarity=0.027 Sum_probs=59.1
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC-----CCeEEEEcCCCCchhhcccCCCcc
Q 024665 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-----TNVIPIIEDARHPAKYRMLVGMVD 215 (264)
Q Consensus 141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~-----~nV~~i~~D~~~~~~~~~~~~~fD 215 (264)
.....+|||||||+|.+++.+++.. |..+|+++|+|+.+++...++...+ .+++++..|+.+.. ...+||
T Consensus 226 ~~~~~~VLDLGCGtGvi~i~la~~~-P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~----~~~~fD 300 (378)
T PRK15001 226 ENLEGEIVDLGCGNGVIGLTLLDKN-PQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGV----EPFRFN 300 (378)
T ss_pred cccCCeEEEEeccccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccC----CCCCEE
Confidence 3345699999999999999999874 6789999999988765544433222 26899999886532 124899
Q ss_pred EEEEcCCC
Q 024665 216 VIFSDVAQ 223 (264)
Q Consensus 216 ~V~~d~p~ 223 (264)
+|++|||.
T Consensus 301 lIlsNPPf 308 (378)
T PRK15001 301 AVLCNPPF 308 (378)
T ss_pred EEEECcCc
Confidence 99999994
No 74
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.06 E-value=1.3e-09 Score=99.86 Aligned_cols=89 Identities=18% Similarity=0.107 Sum_probs=67.4
Q ss_pred hHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC--CCeEEEEcCCCC
Q 024665 126 SKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARH 203 (264)
Q Consensus 126 s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~--~nV~~i~~D~~~ 203 (264)
+.++..+++... ++++++|||++||+|++++.++.. ..+|+++|++++|++....+.... .++++++.|+++
T Consensus 168 ~~la~~~~~l~~---~~~g~~vLDp~cGtG~~lieaa~~---~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~ 241 (329)
T TIGR01177 168 PKLARAMVNLAR---VTEGDRVLDPFCGTGGFLIEAGLM---GAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATK 241 (329)
T ss_pred HHHHHHHHHHhC---CCCcCEEEECCCCCCHHHHHHHHh---CCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhc
Confidence 456666664443 789999999999999999887764 458999999998875544433321 368899999988
Q ss_pred chhhcccCCCccEEEEcCCC
Q 024665 204 PAKYRMLVGMVDVIFSDVAQ 223 (264)
Q Consensus 204 ~~~~~~~~~~fD~V~~d~p~ 223 (264)
.+. ..++||+|++|||.
T Consensus 242 l~~---~~~~~D~Iv~dPPy 258 (329)
T TIGR01177 242 LPL---SSESVDAIATDPPY 258 (329)
T ss_pred CCc---ccCCCCEEEECCCC
Confidence 652 24689999999993
No 75
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.06 E-value=5.3e-10 Score=101.89 Aligned_cols=92 Identities=16% Similarity=0.023 Sum_probs=67.9
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC--CCeEEEEcCCCCchhhcccCCCccEEEE
Q 024665 142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIFS 219 (264)
Q Consensus 142 ~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~--~nV~~i~~D~~~~~~~~~~~~~fD~V~~ 219 (264)
.++.+|||+|||+|.+++.+|.. ..+|+++|+++.+++.+.+.+... .|++++++|+.++... ..+.||+|++
T Consensus 172 ~~~~~VLDl~cG~G~~sl~la~~---~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~--~~~~~D~Vv~ 246 (315)
T PRK03522 172 LPPRSMWDLFCGVGGFGLHCATP---GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATA--QGEVPDLVLV 246 (315)
T ss_pred cCCCEEEEccCCCCHHHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHh--cCCCCeEEEE
Confidence 35689999999999999999985 358999999998876665555433 3899999999775421 2347999999
Q ss_pred cCCCc--hHHHHHHHHHhCCC
Q 024665 220 DVAQP--DQVCFLCLILFQPI 238 (264)
Q Consensus 220 d~p~~--~~~~~~~~~~l~~~ 238 (264)
|||.. .......+....|.
T Consensus 247 dPPr~G~~~~~~~~l~~~~~~ 267 (315)
T PRK03522 247 NPPRRGIGKELCDYLSQMAPR 267 (315)
T ss_pred CCCCCCccHHHHHHHHHcCCC
Confidence 99943 23334455555555
No 76
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.06 E-value=9.9e-10 Score=102.15 Aligned_cols=84 Identities=19% Similarity=0.199 Sum_probs=68.1
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC--CCeEEEEcCCCCchhhcccCCCccEEE
Q 024665 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIF 218 (264)
Q Consensus 141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~--~nV~~i~~D~~~~~~~~~~~~~fD~V~ 218 (264)
...+..|||||||+|.+++++|... |...++|+|+++.++..+.+.+... .||.++++|+..+... ...+++|.|+
T Consensus 120 ~~~~p~vLEIGcGsG~~ll~lA~~~-P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~-~~~~s~D~I~ 197 (390)
T PRK14121 120 KNQEKILIEIGFGSGRHLLYQAKNN-PNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLEL-LPSNSVEKIF 197 (390)
T ss_pred CCCCCeEEEEcCcccHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhh-CCCCceeEEE
Confidence 4556799999999999999999985 6789999999988877766665543 4999999999765322 3356899999
Q ss_pred EcCCCchH
Q 024665 219 SDVAQPDQ 226 (264)
Q Consensus 219 ~d~p~~~~ 226 (264)
++.|.||.
T Consensus 198 lnFPdPW~ 205 (390)
T PRK14121 198 VHFPVPWD 205 (390)
T ss_pred EeCCCCcc
Confidence 99998874
No 77
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.05 E-value=1.5e-09 Score=101.86 Aligned_cols=81 Identities=17% Similarity=0.032 Sum_probs=60.0
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc---C-CCeEEEEcCCCCchhh-cccCCCcc
Q 024665 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK---R-TNVIPIIEDARHPAKY-RMLVGMVD 215 (264)
Q Consensus 141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~---~-~nV~~i~~D~~~~~~~-~~~~~~fD 215 (264)
+.++.+|||+|||+|.++++++. ....+|++||+|+.+++.+.+++.. . .+++++++|+.+.... .....+||
T Consensus 218 ~~~g~rVLDlfsgtG~~~l~aa~--~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fD 295 (396)
T PRK15128 218 YVENKRVLNCFSYTGGFAVSALM--GGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFD 295 (396)
T ss_pred hcCCCeEEEeccCCCHHHHHHHh--CCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCC
Confidence 34688999999999999987764 3456999999998876554444332 2 3799999999876421 11235899
Q ss_pred EEEEcCCC
Q 024665 216 VIFSDVAQ 223 (264)
Q Consensus 216 ~V~~d~p~ 223 (264)
+|++|||.
T Consensus 296 lVilDPP~ 303 (396)
T PRK15128 296 VIVMDPPK 303 (396)
T ss_pred EEEECCCC
Confidence 99999993
No 78
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.05 E-value=2.5e-09 Score=93.09 Aligned_cols=96 Identities=17% Similarity=0.075 Sum_probs=81.2
Q ss_pred CCCCCCEEEEEcccCChHHHHHHHHhCCC-----CEEEEEeCChHHHHHHHHHhhcC---C--CeEEEEcCCCCchhhcc
Q 024665 140 WIKPGARVLYLGAASGTTVSHVSDIVGPN-----GVVYAVEFSHRSGRDLVNMAKKR---T--NVIPIIEDARHPAKYRM 209 (264)
Q Consensus 140 ~l~~g~~VLDlG~G~G~~s~~la~~~~~~-----g~V~avD~s~~~~~~l~~~a~~~---~--nV~~i~~D~~~~~~~~~ 209 (264)
.+.++++|||++||||-++..+.+.+... .+|+.+|+|+.|+....+.++++ . .++++++|+.+++ +
T Consensus 97 ~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~Lp---F 173 (296)
T KOG1540|consen 97 GPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLP---F 173 (296)
T ss_pred CCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCC---C
Confidence 47888999999999999999999999754 79999999999977777777433 2 4999999999987 4
Q ss_pred cCCCccEEEE-----cCCCchHHHHHHHHHhCCC
Q 024665 210 LVGMVDVIFS-----DVAQPDQVCFLCLILFQPI 238 (264)
Q Consensus 210 ~~~~fD~V~~-----d~p~~~~~~~~~~~~l~~~ 238 (264)
....||+..+ |.+.++.+...++..|+|+
T Consensus 174 dd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpG 207 (296)
T KOG1540|consen 174 DDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPG 207 (296)
T ss_pred CCCcceeEEEecceecCCCHHHHHHHHHHhcCCC
Confidence 5678998875 5568889999999999998
No 79
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.05 E-value=1.7e-09 Score=92.16 Aligned_cols=75 Identities=20% Similarity=0.172 Sum_probs=58.2
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC--CCeEEEEcCCCCchhhcccCCCccEEE
Q 024665 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIF 218 (264)
Q Consensus 141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~--~nV~~i~~D~~~~~~~~~~~~~fD~V~ 218 (264)
+.+..+|||+|||+|..+..||+. ..+|+++|+|+.+++.+.+.+... .||++++.|+.+.. +.++||+|+
T Consensus 28 ~~~~~~vLDiGcG~G~~a~~La~~---g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~----~~~~fD~I~ 100 (197)
T PRK11207 28 VVKPGKTLDLGCGNGRNSLYLAAN---GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLT----FDGEYDFIL 100 (197)
T ss_pred cCCCCcEEEECCCCCHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCC----cCCCcCEEE
Confidence 556789999999999999999986 348999999998876655544332 36899999987653 235799999
Q ss_pred EcCC
Q 024665 219 SDVA 222 (264)
Q Consensus 219 ~d~p 222 (264)
+...
T Consensus 101 ~~~~ 104 (197)
T PRK11207 101 STVV 104 (197)
T ss_pred Eecc
Confidence 8654
No 80
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.04 E-value=2.4e-09 Score=96.23 Aligned_cols=75 Identities=25% Similarity=0.203 Sum_probs=58.7
Q ss_pred CCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC---CCeEEEEcCCCCchhhcccCCCccEEEEc
Q 024665 144 GARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDVIFSD 220 (264)
Q Consensus 144 g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~---~nV~~i~~D~~~~~~~~~~~~~fD~V~~d 220 (264)
..+|||+|||+|.+++.++... +..+|+++|+|+.+++.+.+++... .+++++++|+.+.. ...+||+|++|
T Consensus 115 ~~~vLDlG~GsG~i~l~la~~~-~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~----~~~~fDlIvsN 189 (284)
T TIGR00536 115 ILHILDLGTGSGCIALALAYEF-PNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPL----AGQKIDIIVSN 189 (284)
T ss_pred CCEEEEEeccHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccC----cCCCccEEEEC
Confidence 3689999999999999999875 4569999999988865555544322 25999999987643 12379999999
Q ss_pred CCC
Q 024665 221 VAQ 223 (264)
Q Consensus 221 ~p~ 223 (264)
||.
T Consensus 190 PPy 192 (284)
T TIGR00536 190 PPY 192 (284)
T ss_pred CCC
Confidence 993
No 81
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.03 E-value=3.5e-09 Score=94.02 Aligned_cols=91 Identities=26% Similarity=0.229 Sum_probs=67.6
Q ss_pred chHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhh--cCCCeEEEEcCCC
Q 024665 125 RSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAK--KRTNVIPIIEDAR 202 (264)
Q Consensus 125 ~s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~--~~~nV~~i~~D~~ 202 (264)
+..+...++..+ ...+..+|||+|||+|.+++.++... +..+|+++|+|+.+++.+.+... ...++.+++.|+.
T Consensus 93 te~l~~~~~~~~---~~~~~~~vLDiG~GsG~~~~~la~~~-~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~ 168 (275)
T PRK09328 93 TEELVEWALEAL---LLKEPLRVLDLGTGSGAIALALAKER-PDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWF 168 (275)
T ss_pred cHHHHHHHHHhc---cccCCCEEEEEcCcHHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEcccc
Confidence 344444444222 25677899999999999999999886 56799999999988665555443 2348999999986
Q ss_pred CchhhcccCCCccEEEEcCCC
Q 024665 203 HPAKYRMLVGMVDVIFSDVAQ 223 (264)
Q Consensus 203 ~~~~~~~~~~~fD~V~~d~p~ 223 (264)
+... ..+||+|++|+|.
T Consensus 169 ~~~~----~~~fD~Iv~npPy 185 (275)
T PRK09328 169 EPLP----GGRFDLIVSNPPY 185 (275)
T ss_pred CcCC----CCceeEEEECCCc
Confidence 6431 3689999999993
No 82
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.03 E-value=2.3e-09 Score=101.70 Aligned_cols=95 Identities=15% Similarity=0.069 Sum_probs=69.5
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC--CCeEEEEcCCCCchh-hcccCCCccEE
Q 024665 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAK-YRMLVGMVDVI 217 (264)
Q Consensus 141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~--~nV~~i~~D~~~~~~-~~~~~~~fD~V 217 (264)
+.++++|||+|||+|.+++.+|... .+|+++|+++.+++.+.+++..+ .||+++++|+.+..+ .......||+|
T Consensus 290 ~~~~~~vLDl~cG~G~~sl~la~~~---~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~v 366 (431)
T TIGR00479 290 LQGEELVVDAYCGVGTFTLPLAKQA---KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVL 366 (431)
T ss_pred cCCCCEEEEcCCCcCHHHHHHHHhC---CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEE
Confidence 6788999999999999999999874 38999999998876666555432 389999999976422 11123479999
Q ss_pred EEcCCCc--hHHHHHHHHHhCCC
Q 024665 218 FSDVAQP--DQVCFLCLILFQPI 238 (264)
Q Consensus 218 ~~d~p~~--~~~~~~~~~~l~~~ 238 (264)
++|+|.. ....+..+..+.+.
T Consensus 367 i~dPPr~G~~~~~l~~l~~l~~~ 389 (431)
T TIGR00479 367 LLDPPRKGCAAEVLRTIIELKPE 389 (431)
T ss_pred EECcCCCCCCHHHHHHHHhcCCC
Confidence 9999943 23333444555665
No 83
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.03 E-value=5.8e-09 Score=89.54 Aligned_cols=89 Identities=24% Similarity=0.242 Sum_probs=66.3
Q ss_pred hHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC--CCeEEEEcCCCC
Q 024665 126 SKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARH 203 (264)
Q Consensus 126 s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~--~nV~~i~~D~~~ 203 (264)
+.+.+.++..+. ++++++|||+|||+|.++..++... .+|+++|+++.+++.+.+..... .|+++++.|+.+
T Consensus 64 p~~~~~l~~~l~---~~~~~~VLeiG~GsG~~t~~la~~~---~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~ 137 (212)
T PRK00312 64 PYMVARMTELLE---LKPGDRVLEIGTGSGYQAAVLAHLV---RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWK 137 (212)
T ss_pred HHHHHHHHHhcC---CCCCCEEEEECCCccHHHHHHHHHh---CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCccc
Confidence 345555554444 8899999999999999999998875 38999999988866555544322 379999999866
Q ss_pred chhhcccCCCccEEEEcCCC
Q 024665 204 PAKYRMLVGMVDVIFSDVAQ 223 (264)
Q Consensus 204 ~~~~~~~~~~fD~V~~d~p~ 223 (264)
..+ ..++||+|+++.+.
T Consensus 138 ~~~---~~~~fD~I~~~~~~ 154 (212)
T PRK00312 138 GWP---AYAPFDRILVTAAA 154 (212)
T ss_pred CCC---cCCCcCEEEEccCc
Confidence 431 23689999998764
No 84
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.02 E-value=3.5e-09 Score=96.24 Aligned_cols=74 Identities=22% Similarity=0.123 Sum_probs=59.0
Q ss_pred CEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC---CCeEEEEcCCCCchhhcccCCCccEEEEcC
Q 024665 145 ARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDVIFSDV 221 (264)
Q Consensus 145 ~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~---~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~ 221 (264)
.+|||+|||+|.+++.++... +..+|+++|+|+.+++.+.+++... .+|++++.|+.+.. ...+||+|++||
T Consensus 135 ~~VLDlG~GsG~iai~la~~~-p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l----~~~~fDlIvsNP 209 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAF-PDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAAL----PGRRYDLIVSNP 209 (307)
T ss_pred CEEEEEechhhHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhC----CCCCccEEEECC
Confidence 689999999999999999874 5679999999998876555554432 36999999986633 124799999999
Q ss_pred CC
Q 024665 222 AQ 223 (264)
Q Consensus 222 p~ 223 (264)
|.
T Consensus 210 Py 211 (307)
T PRK11805 210 PY 211 (307)
T ss_pred CC
Confidence 93
No 85
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.01 E-value=3.9e-09 Score=92.22 Aligned_cols=90 Identities=28% Similarity=0.257 Sum_probs=66.4
Q ss_pred chHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC--CCeEEEEcCCC
Q 024665 125 RSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDAR 202 (264)
Q Consensus 125 ~s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~--~nV~~i~~D~~ 202 (264)
+..++..++..+. ....+|||+|||+|.++..++... +..+|+++|+++.+++.+.+..... .|+++++.|+.
T Consensus 73 ~~~l~~~~l~~~~----~~~~~ilDig~G~G~~~~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~ 147 (251)
T TIGR03534 73 TEELVEAALERLK----KGPLRVLDLGTGSGAIALALAKER-PDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWF 147 (251)
T ss_pred hHHHHHHHHHhcc----cCCCeEEEEeCcHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchh
Confidence 3445555554332 244689999999999999999875 4669999999998876555544332 27999999997
Q ss_pred CchhhcccCCCccEEEEcCCC
Q 024665 203 HPAKYRMLVGMVDVIFSDVAQ 223 (264)
Q Consensus 203 ~~~~~~~~~~~fD~V~~d~p~ 223 (264)
+.. ..++||+|++|+|.
T Consensus 148 ~~~----~~~~fD~Vi~npPy 164 (251)
T TIGR03534 148 EPL----PGGKFDLIVSNPPY 164 (251)
T ss_pred ccC----cCCceeEEEECCCC
Confidence 643 24689999999993
No 86
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.01 E-value=1.1e-09 Score=93.10 Aligned_cols=75 Identities=23% Similarity=0.156 Sum_probs=56.0
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC-CCeEEEEcCCCCchhhcccCCCccEEEE
Q 024665 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRMLVGMVDVIFS 219 (264)
Q Consensus 141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~-~nV~~i~~D~~~~~~~~~~~~~fD~V~~ 219 (264)
+.+..+|||+|||+|.++..+|+. ..+|+++|+|+.+++.+.+.+... .++.+.+.|+.... +.++||+|++
T Consensus 28 ~~~~~~vLDiGcG~G~~a~~la~~---g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~----~~~~fD~I~~ 100 (195)
T TIGR00477 28 TVAPCKTLDLGCGQGRNSLYLSLA---GYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAA----LNEDYDFIFS 100 (195)
T ss_pred cCCCCcEEEeCCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhcc----ccCCCCEEEE
Confidence 445679999999999999999985 358999999998876655544322 25777788875432 2357999998
Q ss_pred cCC
Q 024665 220 DVA 222 (264)
Q Consensus 220 d~p 222 (264)
..+
T Consensus 101 ~~~ 103 (195)
T TIGR00477 101 TVV 103 (195)
T ss_pred ecc
Confidence 754
No 87
>PHA03412 putative methyltransferase; Provisional
Probab=99.00 E-value=1.5e-09 Score=94.42 Aligned_cols=112 Identities=13% Similarity=0.011 Sum_probs=72.5
Q ss_pred CCCEEEEEcccCChHHHHHHHHhC--CCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEc
Q 024665 143 PGARVLYLGAASGTTVSHVSDIVG--PNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSD 220 (264)
Q Consensus 143 ~g~~VLDlG~G~G~~s~~la~~~~--~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d 220 (264)
.+.+|||+|||+|.+++.++..+. +..+|++||+++.+++.+.+. ..++.+++.|+.+.. ...+||+|++|
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n---~~~~~~~~~D~~~~~----~~~~FDlIIsN 121 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRI---VPEATWINADALTTE----FDTLFDMAISN 121 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhh---ccCCEEEEcchhccc----ccCCccEEEEC
Confidence 367999999999999999998753 356899999999875444322 236899999997643 24689999999
Q ss_pred CCCchHHHHHHHHHhCCC---cHHHHHHHHHHhhcchhhhhhhhhc
Q 024665 221 VAQPDQVCFLCLILFQPI---VINNLQSVNNETKGGIFEFLFSLFL 263 (264)
Q Consensus 221 ~p~~~~~~~~~~~~l~~~---~~~~l~~~~~~Lk~g~f~~l~~~~~ 263 (264)
||.-....... ...+.. ....+..+.+.++.|.| ++=+.++
T Consensus 122 PPY~~~~~~d~-~ar~~g~~~~~~li~~A~~Ll~~G~~-ILP~~~~ 165 (241)
T PHA03412 122 PPFGKIKTSDF-KGKYTGAEFEYKVIERASQIARQGTF-IIPQMSA 165 (241)
T ss_pred CCCCCcccccc-CCcccccHHHHHHHHHHHHHcCCCEE-EeCcccc
Confidence 99432211100 111111 33345555554556666 5544433
No 88
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.00 E-value=2.4e-09 Score=90.75 Aligned_cols=94 Identities=15% Similarity=0.062 Sum_probs=64.4
Q ss_pred hHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhh---cCCCeEEEEcCCC
Q 024665 126 SKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAK---KRTNVIPIIEDAR 202 (264)
Q Consensus 126 s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~---~~~nV~~i~~D~~ 202 (264)
+.+-..+.+.+. ..-++.+|||++||+|.+++.++.+ .+.+|++||.++.+++.+.+++. ...++++++.|+.
T Consensus 34 ~~vrea~f~~l~--~~~~g~~vLDLfaGsG~lglea~sr--ga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~ 109 (189)
T TIGR00095 34 RVVRELFFNILR--PEIQGAHLLDVFAGSGLLGEEALSR--GAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSAL 109 (189)
T ss_pred HHHHHHHHHHHH--HhcCCCEEEEecCCCcHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHH
Confidence 334444444443 2346889999999999999999987 34589999999877644444333 2247899999996
Q ss_pred CchhhcccC-CCccEEEEcCCC
Q 024665 203 HPAKYRMLV-GMVDVIFSDVAQ 223 (264)
Q Consensus 203 ~~~~~~~~~-~~fD~V~~d~p~ 223 (264)
+........ ..+|+|++|||.
T Consensus 110 ~~l~~~~~~~~~~dvv~~DPPy 131 (189)
T TIGR00095 110 RALKFLAKKPTFDNVIYLDPPF 131 (189)
T ss_pred HHHHHhhccCCCceEEEECcCC
Confidence 643210111 248999999994
No 89
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.00 E-value=2.1e-09 Score=96.48 Aligned_cols=71 Identities=27% Similarity=0.330 Sum_probs=56.4
Q ss_pred EEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC--CCeEEEEcCCCCchhhcccCCCccEEEEcCC
Q 024665 146 RVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIFSDVA 222 (264)
Q Consensus 146 ~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~--~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p 222 (264)
+|||+|||||.+++.+|... +...|+|+|+|+++++-+.+++... .|+.+++.|..+.. .++||+|++|||
T Consensus 113 ~ilDlGTGSG~iai~la~~~-~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~-----~~~fDlIVsNPP 185 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEG-PDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPL-----RGKFDLIVSNPP 185 (280)
T ss_pred cEEEecCChHHHHHHHHhhC-cCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeeccccc-----CCceeEEEeCCC
Confidence 79999999999999999885 5679999999998865544444433 36777777876643 359999999999
No 90
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=98.99 E-value=1.9e-09 Score=81.65 Aligned_cols=71 Identities=21% Similarity=0.240 Sum_probs=53.9
Q ss_pred EEEEcccCChHHHHHHHHh--CCCCEEEEEeCChHHHHHHHHHhhcC-CCeEEEEcCCCCchhhcccCCCccEEEEc
Q 024665 147 VLYLGAASGTTVSHVSDIV--GPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRMLVGMVDVIFSD 220 (264)
Q Consensus 147 VLDlG~G~G~~s~~la~~~--~~~g~V~avD~s~~~~~~l~~~a~~~-~nV~~i~~D~~~~~~~~~~~~~fD~V~~d 220 (264)
|||+|||+|..+..+++.+ ++..+++++|+|++|++...+..... .++++++.|+.+++. ..++||+|++.
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~---~~~~~D~v~~~ 74 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPF---SDGKFDLVVCS 74 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHH---HSSSEEEEEE-
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcc---cCCCeeEEEEc
Confidence 7999999999999999987 33469999999999876666655433 389999999998653 45699999993
No 91
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=98.99 E-value=2.2e-09 Score=79.00 Aligned_cols=92 Identities=18% Similarity=0.166 Sum_probs=66.3
Q ss_pred EEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEcCCCchHH
Q 024665 148 LYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQV 227 (264)
Q Consensus 148 LDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p~~~~~ 227 (264)
||+|||+|..+..+++. +...|+++|+++.+++.+.+... ..++.+++.|+++++ ...++||+|++.....
T Consensus 1 LdiG~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~~~~~~~-~~~~~~~~~d~~~l~---~~~~sfD~v~~~~~~~--- 71 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR--GGASVTGIDISEEMLEQARKRLK-NEGVSFRQGDAEDLP---FPDNSFDVVFSNSVLH--- 71 (95)
T ss_dssp EEET-TTSHHHHHHHHT--TTCEEEEEES-HHHHHHHHHHTT-TSTEEEEESBTTSSS---S-TT-EEEEEEESHGG---
T ss_pred CEecCcCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHhccc-ccCchheeehHHhCc---ccccccccccccccee---
Confidence 89999999999999998 56799999999988766555443 447889999999875 3567999999864311
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHhh-cchh
Q 024665 228 CFLCLILFQPIVINNLQSVNNETK-GGIF 255 (264)
Q Consensus 228 ~~~~~~~l~~~~~~~l~~~~~~Lk-~g~f 255 (264)
+.+.....+.++.+.|| +|.+
T Consensus 72 -------~~~~~~~~l~e~~rvLk~gG~l 93 (95)
T PF08241_consen 72 -------HLEDPEAALREIYRVLKPGGRL 93 (95)
T ss_dssp -------GSSHHHHHHHHHHHHEEEEEEE
T ss_pred -------eccCHHHHHHHHHHHcCcCeEE
Confidence 11335566778888888 6554
No 92
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.99 E-value=2.3e-09 Score=91.24 Aligned_cols=89 Identities=30% Similarity=0.344 Sum_probs=67.6
Q ss_pred chHHHHHHHhcccccC-CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCC
Q 024665 125 RSKLAAAVLGGVDNIW-IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARH 203 (264)
Q Consensus 125 ~s~l~~~il~~l~~~~-l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~ 203 (264)
+|.-+-.++...++.. +++++.|+||||++|.|+..+++++++.+.|+|||+.|- + .-++|.++++|+++
T Consensus 26 RSRAa~KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~------~---~~~~V~~iq~d~~~ 96 (205)
T COG0293 26 RSRAAYKLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPM------K---PIPGVIFLQGDITD 96 (205)
T ss_pred cchHHHHHHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccc------c---cCCCceEEeeeccC
Confidence 4555555554444443 688999999999999999999999998889999999971 1 23479999999998
Q ss_pred chhhcc----cC-CCccEEEEcCC
Q 024665 204 PAKYRM----LV-GMVDVIFSDVA 222 (264)
Q Consensus 204 ~~~~~~----~~-~~fD~V~~d~p 222 (264)
...... +. ..+|+|++|++
T Consensus 97 ~~~~~~l~~~l~~~~~DvV~sD~a 120 (205)
T COG0293 97 EDTLEKLLEALGGAPVDVVLSDMA 120 (205)
T ss_pred ccHHHHHHHHcCCCCcceEEecCC
Confidence 653311 12 25799999988
No 93
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.99 E-value=1.6e-09 Score=101.03 Aligned_cols=93 Identities=12% Similarity=0.020 Sum_probs=68.6
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC--CCeEEEEcCCCCchhhcccCCCccEEE
Q 024665 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIF 218 (264)
Q Consensus 141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~--~nV~~i~~D~~~~~~~~~~~~~fD~V~ 218 (264)
..++.+|||++||+|.+++.+|.. ..+|++||+++.+++.+.+++... .|+++++.|+.+.... ...+||+|+
T Consensus 231 ~~~~~~vLDL~cG~G~~~l~la~~---~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~--~~~~~D~vi 305 (374)
T TIGR02085 231 EIPVTQMWDLFCGVGGFGLHCAGP---DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATA--QMSAPELVL 305 (374)
T ss_pred hcCCCEEEEccCCccHHHHHHhhc---CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHh--cCCCCCEEE
Confidence 346689999999999999999965 358999999998876666555433 3899999999765421 224699999
Q ss_pred EcCCCc--hHHHHHHHHHhCCC
Q 024665 219 SDVAQP--DQVCFLCLILFQPI 238 (264)
Q Consensus 219 ~d~p~~--~~~~~~~~~~l~~~ 238 (264)
+|||.. +...+..+..+.|.
T Consensus 306 ~DPPr~G~~~~~l~~l~~~~p~ 327 (374)
T TIGR02085 306 VNPPRRGIGKELCDYLSQMAPK 327 (374)
T ss_pred ECCCCCCCcHHHHHHHHhcCCC
Confidence 999932 34444555556665
No 94
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=98.98 E-value=5.7e-10 Score=96.57 Aligned_cols=91 Identities=22% Similarity=0.242 Sum_probs=70.2
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCC-CeEEEEcCCCCchhhcccCCCccEEEEc
Q 024665 142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRT-NVIPIIEDARHPAKYRMLVGMVDVIFSD 220 (264)
Q Consensus 142 ~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~-nV~~i~~D~~~~~~~~~~~~~fD~V~~d 220 (264)
-++.+|||+|||-|.++..||+. ...|+|+|+++++++.....+.... +|.+.+..+.++.. ..++||+|+|-
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~---Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~---~~~~FDvV~cm 131 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARL---GASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLAS---AGGQFDVVTCM 131 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHC---CCeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHh---cCCCccEEEEh
Confidence 47899999999999999999987 3699999999988766666665443 56677777766542 23699999984
Q ss_pred -----CCCchHHHHHHHHHhCCC
Q 024665 221 -----VAQPDQVCFLCLILFQPI 238 (264)
Q Consensus 221 -----~p~~~~~~~~~~~~l~~~ 238 (264)
+|+|+.........++|.
T Consensus 132 EVlEHv~dp~~~~~~c~~lvkP~ 154 (243)
T COG2227 132 EVLEHVPDPESFLRACAKLVKPG 154 (243)
T ss_pred hHHHccCCHHHHHHHHHHHcCCC
Confidence 557777666677777887
No 95
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.97 E-value=5.3e-09 Score=93.62 Aligned_cols=77 Identities=19% Similarity=0.192 Sum_probs=58.8
Q ss_pred CCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC--CCeEEEEcCCCCchhhcccCCCccEE
Q 024665 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVI 217 (264)
Q Consensus 140 ~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~--~nV~~i~~D~~~~~~~~~~~~~fD~V 217 (264)
...++.+|||+|||.|.+++.+|+.. |..+|+-+|+|.++++-..++...+ .|.+++..|..+.. .++||.|
T Consensus 155 ~~~~~~~vlDlGCG~Gvlg~~la~~~-p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v-----~~kfd~I 228 (300)
T COG2813 155 PPDLGGKVLDLGCGYGVLGLVLAKKS-PQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPV-----EGKFDLI 228 (300)
T ss_pred CccCCCcEEEeCCCccHHHHHHHHhC-CCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccccc-----cccccEE
Confidence 35556699999999999999999985 6889999999988765444443333 24467777776543 3599999
Q ss_pred EEcCC
Q 024665 218 FSDVA 222 (264)
Q Consensus 218 ~~d~p 222 (264)
++|||
T Consensus 229 isNPP 233 (300)
T COG2813 229 ISNPP 233 (300)
T ss_pred EeCCC
Confidence 99999
No 96
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=98.96 E-value=6.8e-09 Score=95.69 Aligned_cols=76 Identities=13% Similarity=0.103 Sum_probs=57.7
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC-CCeEEEEcCCCCchhhcccCCCccEEEEc
Q 024665 142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRMLVGMVDVIFSD 220 (264)
Q Consensus 142 ~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~-~nV~~i~~D~~~~~~~~~~~~~fD~V~~d 220 (264)
....+|||+|||+|.++..+++.. +..+|+++|+|+.+++...+....+ ...+++..|+.+. ..+.||+|++|
T Consensus 195 ~~~g~VLDlGCG~G~ls~~la~~~-p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~-----~~~~fDlIvsN 268 (342)
T PRK09489 195 HTKGKVLDVGCGAGVLSAVLARHS-PKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSD-----IKGRFDMIISN 268 (342)
T ss_pred cCCCeEEEeccCcCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccc-----cCCCccEEEEC
Confidence 344589999999999999999874 5678999999998876555444333 2456777887542 24689999999
Q ss_pred CCC
Q 024665 221 VAQ 223 (264)
Q Consensus 221 ~p~ 223 (264)
+|.
T Consensus 269 PPF 271 (342)
T PRK09489 269 PPF 271 (342)
T ss_pred CCc
Confidence 984
No 97
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=98.96 E-value=6.7e-09 Score=94.92 Aligned_cols=92 Identities=16% Similarity=0.147 Sum_probs=68.2
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC---CCeEEEEcCCCCchhhcccCCCccEE
Q 024665 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDVI 217 (264)
Q Consensus 141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~---~nV~~i~~D~~~~~~~~~~~~~fD~V 217 (264)
+.++.+|||+|||+|.++..++.. ..+|++||+++++++.+.+.+... .+|++++.|+.++.. ..++||+|
T Consensus 129 ~~~g~~ILDIGCG~G~~s~~La~~---g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~---~~~~FD~V 202 (322)
T PLN02396 129 PFEGLKFIDIGCGGGLLSEPLARM---GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLAD---EGRKFDAV 202 (322)
T ss_pred CCCCCEEEEeeCCCCHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhh---ccCCCCEE
Confidence 456789999999999999999864 458999999998876655544332 389999999877542 34689999
Q ss_pred EEcC-----CCchHHHHHHHHHhCCC
Q 024665 218 FSDV-----AQPDQVCFLCLILFQPI 238 (264)
Q Consensus 218 ~~d~-----p~~~~~~~~~~~~l~~~ 238 (264)
++.- +.+..........++|+
T Consensus 203 i~~~vLeHv~d~~~~L~~l~r~LkPG 228 (322)
T PLN02396 203 LSLEVIEHVANPAEFCKSLSALTIPN 228 (322)
T ss_pred EEhhHHHhcCCHHHHHHHHHHHcCCC
Confidence 9743 24555555566666666
No 98
>PRK14968 putative methyltransferase; Provisional
Probab=98.95 E-value=1e-08 Score=85.48 Aligned_cols=75 Identities=27% Similarity=0.185 Sum_probs=58.3
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCC--C--eEEEEcCCCCchhhcccCCCccE
Q 024665 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRT--N--VIPIIEDARHPAKYRMLVGMVDV 216 (264)
Q Consensus 141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~--n--V~~i~~D~~~~~~~~~~~~~fD~ 216 (264)
..++.+|||+|||+|.++..++.. ..+|+++|+|+.+++.+.+...... + +.+++.|+.+.. ....||+
T Consensus 21 ~~~~~~vLd~G~G~G~~~~~l~~~---~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~d~ 93 (188)
T PRK14968 21 DKKGDRVLEVGTGSGIVAIVAAKN---GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPF----RGDKFDV 93 (188)
T ss_pred ccCCCEEEEEccccCHHHHHHHhh---cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccc----cccCceE
Confidence 468889999999999999999987 3689999999888655544433221 2 889999987643 2247999
Q ss_pred EEEcCC
Q 024665 217 IFSDVA 222 (264)
Q Consensus 217 V~~d~p 222 (264)
|++|+|
T Consensus 94 vi~n~p 99 (188)
T PRK14968 94 ILFNPP 99 (188)
T ss_pred EEECCC
Confidence 999988
No 99
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=98.95 E-value=2.5e-09 Score=90.02 Aligned_cols=74 Identities=26% Similarity=0.283 Sum_probs=58.3
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEc
Q 024665 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSD 220 (264)
Q Consensus 141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d 220 (264)
++|+++|||||||.|.+..+|.+. ...+.++||++++. +..+..+ -+.++++|+.+.... +...+||.|++.
T Consensus 11 I~pgsrVLDLGCGdG~LL~~L~~~--k~v~g~GvEid~~~----v~~cv~r-Gv~Viq~Dld~gL~~-f~d~sFD~VIls 82 (193)
T PF07021_consen 11 IEPGSRVLDLGCGDGELLAYLKDE--KQVDGYGVEIDPDN----VAACVAR-GVSVIQGDLDEGLAD-FPDQSFDYVILS 82 (193)
T ss_pred cCCCCEEEecCCCchHHHHHHHHh--cCCeEEEEecCHHH----HHHHHHc-CCCEEECCHHHhHhh-CCCCCccEEehH
Confidence 789999999999999999999987 46789999999854 3333222 577999999875432 456799999986
Q ss_pred CC
Q 024665 221 VA 222 (264)
Q Consensus 221 ~p 222 (264)
-+
T Consensus 83 qt 84 (193)
T PF07021_consen 83 QT 84 (193)
T ss_pred hH
Confidence 54
No 100
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.95 E-value=4.8e-09 Score=93.71 Aligned_cols=87 Identities=17% Similarity=0.155 Sum_probs=66.8
Q ss_pred HHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchh
Q 024665 127 KLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAK 206 (264)
Q Consensus 127 ~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~ 206 (264)
.++..++..++ +.++++|||+|||+|.+|..+++.. .+|+++|+++++++.+.+... ..+++++++|+.+...
T Consensus 29 ~i~~~i~~~l~---~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~avE~d~~~~~~~~~~~~-~~~v~~i~~D~~~~~~ 101 (272)
T PRK00274 29 NILDKIVDAAG---PQPGDNVLEIGPGLGALTEPLLERA---AKVTAVEIDRDLAPILAETFA-EDNLTIIEGDALKVDL 101 (272)
T ss_pred HHHHHHHHhcC---CCCcCeEEEeCCCccHHHHHHHHhC---CcEEEEECCHHHHHHHHHhhc-cCceEEEEChhhcCCH
Confidence 45555655444 7889999999999999999999984 289999999988766655332 2689999999988642
Q ss_pred hcccCCCccEEEEcCCC
Q 024665 207 YRMLVGMVDVIFSDVAQ 223 (264)
Q Consensus 207 ~~~~~~~fD~V~~d~p~ 223 (264)
. . -.+|.|++|+|.
T Consensus 102 ~-~--~~~~~vv~NlPY 115 (272)
T PRK00274 102 S-E--LQPLKVVANLPY 115 (272)
T ss_pred H-H--cCcceEEEeCCc
Confidence 1 1 116999999993
No 101
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.95 E-value=6e-09 Score=92.03 Aligned_cols=92 Identities=22% Similarity=0.199 Sum_probs=68.9
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc---CCCeEEEEcCCCCchhhcccCCCccEEE
Q 024665 142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK---RTNVIPIIEDARHPAKYRMLVGMVDVIF 218 (264)
Q Consensus 142 ~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~---~~nV~~i~~D~~~~~~~~~~~~~fD~V~ 218 (264)
.+..+|||+|||+|.++..+++. ..+|+++|+|+.+++.+.+.... ..+++++++|+.+.... ..++||+|+
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~---g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~--~~~~fD~V~ 117 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAEL---GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQH--LETPVDLIL 117 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhh--cCCCCCEEE
Confidence 45679999999999999999986 35899999999887665554433 24799999999876432 346899999
Q ss_pred EcCC-----CchHHHHHHHHHhCCC
Q 024665 219 SDVA-----QPDQVCFLCLILFQPI 238 (264)
Q Consensus 219 ~d~p-----~~~~~~~~~~~~l~~~ 238 (264)
+... .|........+.++|+
T Consensus 118 ~~~vl~~~~~~~~~l~~~~~~Lkpg 142 (255)
T PRK11036 118 FHAVLEWVADPKSVLQTLWSVLRPG 142 (255)
T ss_pred ehhHHHhhCCHHHHHHHHHHHcCCC
Confidence 8754 4555555556666666
No 102
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.94 E-value=5.1e-09 Score=94.55 Aligned_cols=86 Identities=21% Similarity=0.269 Sum_probs=67.7
Q ss_pred HHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc---CCCeEEEEcCCCC
Q 024665 127 KLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK---RTNVIPIIEDARH 203 (264)
Q Consensus 127 ~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~---~~nV~~i~~D~~~ 203 (264)
.++..|+..+. +.++++|||+|||+|.+|..+++.. .+|+|+|+++++++.+.+.... ..|++++++|+.+
T Consensus 23 ~i~~~Iv~~~~---~~~~~~VLEIG~G~G~LT~~Ll~~~---~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~ 96 (294)
T PTZ00338 23 LVLDKIVEKAA---IKPTDTVLEIGPGTGNLTEKLLQLA---KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALK 96 (294)
T ss_pred HHHHHHHHhcC---CCCcCEEEEecCchHHHHHHHHHhC---CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhh
Confidence 34555554444 7899999999999999999999873 4799999999998776655432 3589999999987
Q ss_pred chhhcccCCCccEEEEcCCC
Q 024665 204 PAKYRMLVGMVDVIFSDVAQ 223 (264)
Q Consensus 204 ~~~~~~~~~~fD~V~~d~p~ 223 (264)
.. ...||+|++|+|.
T Consensus 97 ~~-----~~~~d~VvaNlPY 111 (294)
T PTZ00338 97 TE-----FPYFDVCVANVPY 111 (294)
T ss_pred hc-----ccccCEEEecCCc
Confidence 54 2468999999993
No 103
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.93 E-value=8.5e-09 Score=99.72 Aligned_cols=75 Identities=21% Similarity=0.095 Sum_probs=59.2
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC---CCeEEEEcCCCCchhhcccCCCccEEEE
Q 024665 143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDVIFS 219 (264)
Q Consensus 143 ~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~---~nV~~i~~D~~~~~~~~~~~~~fD~V~~ 219 (264)
+..+|||+|||||.+++.++... +..+|+++|+|+.+++.+.+++... .+|++++.|+.+.. ...+||+|++
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~-p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~----~~~~fDlIvs 212 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCEL-PNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENI----EKQKFDFIVS 212 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhC----cCCCccEEEE
Confidence 35689999999999999999875 5679999999998876555544332 37999999986532 1358999999
Q ss_pred cCC
Q 024665 220 DVA 222 (264)
Q Consensus 220 d~p 222 (264)
|||
T Consensus 213 NPP 215 (506)
T PRK01544 213 NPP 215 (506)
T ss_pred CCC
Confidence 999
No 104
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.91 E-value=9.1e-09 Score=90.79 Aligned_cols=88 Identities=19% Similarity=0.210 Sum_probs=71.4
Q ss_pred HHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchh
Q 024665 127 KLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAK 206 (264)
Q Consensus 127 ~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~ 206 (264)
..+..|+..++ +.+++.|||+|+|.|.+|..|++... +|+|||++++++..+.+......|++++++|+.+...
T Consensus 17 ~v~~kIv~~a~---~~~~d~VlEIGpG~GaLT~~Ll~~~~---~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~ 90 (259)
T COG0030 17 NVIDKIVEAAN---ISPGDNVLEIGPGLGALTEPLLERAA---RVTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDF 90 (259)
T ss_pred HHHHHHHHhcC---CCCCCeEEEECCCCCHHHHHHHhhcC---eEEEEEeCHHHHHHHHHhcccccceEEEeCchhcCcc
Confidence 34566665554 88899999999999999999999843 8999999999988877776656799999999988652
Q ss_pred hcccCCCccEEEEcCC
Q 024665 207 YRMLVGMVDVIFSDVA 222 (264)
Q Consensus 207 ~~~~~~~fD~V~~d~p 222 (264)
. .+. .++.|++|.|
T Consensus 91 ~-~l~-~~~~vVaNlP 104 (259)
T COG0030 91 P-SLA-QPYKVVANLP 104 (259)
T ss_pred h-hhc-CCCEEEEcCC
Confidence 1 011 7899999999
No 105
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=98.91 E-value=6.7e-09 Score=91.28 Aligned_cols=89 Identities=13% Similarity=0.053 Sum_probs=63.6
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEc
Q 024665 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSD 220 (264)
Q Consensus 141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d 220 (264)
..+..+|||+|||+|.++..++.. ..+|+++|+|+.+++...+.. ..+.+++.|+.+.+ ...++||+|+++
T Consensus 40 ~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~~D~s~~~l~~a~~~~---~~~~~~~~d~~~~~---~~~~~fD~V~s~ 110 (251)
T PRK10258 40 QRKFTHVLDAGCGPGWMSRYWRER---GSQVTALDLSPPMLAQARQKD---AADHYLAGDIESLP---LATATFDLAWSN 110 (251)
T ss_pred ccCCCeEEEeeCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhC---CCCCEEEcCcccCc---CCCCcEEEEEEC
Confidence 446789999999999999999865 358999999998754433322 24578899997754 234689999998
Q ss_pred CC-----CchHHHHHHHHHhCCC
Q 024665 221 VA-----QPDQVCFLCLILFQPI 238 (264)
Q Consensus 221 ~p-----~~~~~~~~~~~~l~~~ 238 (264)
.+ .+..........++|.
T Consensus 111 ~~l~~~~d~~~~l~~~~~~Lk~g 133 (251)
T PRK10258 111 LAVQWCGNLSTALRELYRVVRPG 133 (251)
T ss_pred chhhhcCCHHHHHHHHHHHcCCC
Confidence 76 3344445555566665
No 106
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=98.91 E-value=1.6e-08 Score=86.69 Aligned_cols=74 Identities=19% Similarity=0.267 Sum_probs=58.1
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEc
Q 024665 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSD 220 (264)
Q Consensus 141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d 220 (264)
+.++.+|||+|||+|.++..++..+ +..+|++||+|+.+++.+.+. .++++++++|+.++ ...++||+|+++
T Consensus 41 ~~~~~~VLDiGCG~G~~~~~L~~~~-~~~~v~giDiS~~~l~~A~~~---~~~~~~~~~d~~~~----~~~~sfD~V~~~ 112 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAALKRLL-PFKHIYGVEINEYAVEKAKAY---LPNINIIQGSLFDP----FKDNFFDLVLTK 112 (204)
T ss_pred cCCCCcEEEEecCCCHHHHHHHHhC-CCCeEEEEECCHHHHHHHHhh---CCCCcEEEeeccCC----CCCCCEEEEEEC
Confidence 5677899999999999999999875 457899999999886544332 24678889998873 235689999986
Q ss_pred CC
Q 024665 221 VA 222 (264)
Q Consensus 221 ~p 222 (264)
..
T Consensus 113 ~v 114 (204)
T TIGR03587 113 GV 114 (204)
T ss_pred Ch
Confidence 54
No 107
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.91 E-value=3.2e-09 Score=98.30 Aligned_cols=90 Identities=28% Similarity=0.196 Sum_probs=59.5
Q ss_pred hHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCC--CeEEEEcCCCC
Q 024665 126 SKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRT--NVIPIIEDARH 203 (264)
Q Consensus 126 s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~--nV~~i~~D~~~ 203 (264)
.++...++..++ ..++ +|||++||+|++++.||..+. +|+|||+++.+++.+.+++..+. |+++++.++.+
T Consensus 183 ~~l~~~~~~~l~---~~~~-~vlDlycG~G~fsl~la~~~~---~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~ 255 (352)
T PF05958_consen 183 EKLYEQALEWLD---LSKG-DVLDLYCGVGTFSLPLAKKAK---KVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAED 255 (352)
T ss_dssp HHHHHHHHHHCT---T-TT-EEEEES-TTTCCHHHHHCCSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHH
T ss_pred HHHHHHHHHHhh---cCCC-cEEEEeecCCHHHHHHHhhCC---eEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccc
Confidence 345555554444 5555 899999999999999998754 89999999998877777776554 99999988755
Q ss_pred chhh----------c---ccCCCccEEEEcCC
Q 024665 204 PAKY----------R---MLVGMVDVIFSDVA 222 (264)
Q Consensus 204 ~~~~----------~---~~~~~fD~V~~d~p 222 (264)
+... . .....+|+|++|||
T Consensus 256 ~~~~~~~~r~~~~~~~~~~~~~~~d~vilDPP 287 (352)
T PF05958_consen 256 FAKALAKAREFNRLKGIDLKSFKFDAVILDPP 287 (352)
T ss_dssp CCCHHCCS-GGTTGGGS-GGCTTESEEEE---
T ss_pred hhHHHHhhHHHHhhhhhhhhhcCCCEEEEcCC
Confidence 3210 0 01126899999999
No 108
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.90 E-value=1.1e-08 Score=86.04 Aligned_cols=92 Identities=25% Similarity=0.206 Sum_probs=62.9
Q ss_pred chHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCC--------EEEEEeCChHHHHHHHHHhh---cCCC
Q 024665 125 RSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNG--------VVYAVEFSHRSGRDLVNMAK---KRTN 193 (264)
Q Consensus 125 ~s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g--------~V~avD~s~~~~~~l~~~a~---~~~n 193 (264)
++.+++.++.... +++++.|||-.||+|++.+..|....... +++++|+++++++...+++. ....
T Consensus 13 ~~~lA~~ll~la~---~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~ 89 (179)
T PF01170_consen 13 RPTLAAALLNLAG---WRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDY 89 (179)
T ss_dssp -HHHHHHHHHHTT-----TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGG
T ss_pred CHHHHHHHHHHhC---CCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCc
Confidence 4678888876555 88999999999999999999987765333 38999999888654444333 3336
Q ss_pred eEEEEcCCCCchhhcccCCCccEEEEcCC
Q 024665 194 VIPIIEDARHPAKYRMLVGMVDVIFSDVA 222 (264)
Q Consensus 194 V~~i~~D~~~~~~~~~~~~~fD~V~~d~p 222 (264)
|.+++.|+++++ ...+.+|+|++|||
T Consensus 90 i~~~~~D~~~l~---~~~~~~d~IvtnPP 115 (179)
T PF01170_consen 90 IDFIQWDARELP---LPDGSVDAIVTNPP 115 (179)
T ss_dssp EEEEE--GGGGG---GTTSBSCEEEEE--
T ss_pred eEEEecchhhcc---cccCCCCEEEECcc
Confidence 899999999877 23568999999999
No 109
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.90 E-value=6.9e-09 Score=93.56 Aligned_cols=95 Identities=17% Similarity=0.158 Sum_probs=73.9
Q ss_pred chHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCc
Q 024665 125 RSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHP 204 (264)
Q Consensus 125 ~s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~ 204 (264)
.+-|..+++..|. ++|+..+||++||.|..|..+++.+.+.++|||+|.++.+++...+......++++++.|..++
T Consensus 4 ~pVll~Evl~~L~---~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l 80 (296)
T PRK00050 4 IPVLLDEVVDALA---IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNL 80 (296)
T ss_pred ccccHHHHHHhhC---CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHH
Confidence 4556677776665 7899999999999999999999998778999999999988655544332234899999999987
Q ss_pred hhhccc-CCCccEEEEcCC
Q 024665 205 AKYRML-VGMVDVIFSDVA 222 (264)
Q Consensus 205 ~~~~~~-~~~fD~V~~d~p 222 (264)
..+... ..+||.|++|.-
T Consensus 81 ~~~l~~~~~~vDgIl~DLG 99 (296)
T PRK00050 81 KEVLAEGLGKVDGILLDLG 99 (296)
T ss_pred HHHHHcCCCccCEEEECCC
Confidence 653111 127999999865
No 110
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=98.90 E-value=8.5e-09 Score=88.91 Aligned_cols=106 Identities=21% Similarity=0.150 Sum_probs=71.7
Q ss_pred HHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchh
Q 024665 127 KLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAK 206 (264)
Q Consensus 127 ~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~ 206 (264)
.++..++..+.........+|||+|||+|.++..+++.. +..+|+++|+++.+++.+.+... .++.+++.|+.+.+
T Consensus 18 ~~~~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~--~~~~~~~~d~~~~~- 93 (240)
T TIGR02072 18 EMAKRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRF-PQAEFIALDISAGMLAQAKTKLS--ENVQFICGDAEKLP- 93 (240)
T ss_pred HHHHHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhC-CCCcEEEEeChHHHHHHHHHhcC--CCCeEEecchhhCC-
Confidence 444445444443222344789999999999999999885 56789999999877654444332 48899999998754
Q ss_pred hcccCCCccEEEEcCC-----CchHHHHHHHHHhCCC
Q 024665 207 YRMLVGMVDVIFSDVA-----QPDQVCFLCLILFQPI 238 (264)
Q Consensus 207 ~~~~~~~fD~V~~d~p-----~~~~~~~~~~~~l~~~ 238 (264)
...++||+|+++.. .+........+.++|.
T Consensus 94 --~~~~~fD~vi~~~~l~~~~~~~~~l~~~~~~L~~~ 128 (240)
T TIGR02072 94 --LEDSSFDLIVSNLALQWCDDLSQALSELARVLKPG 128 (240)
T ss_pred --CCCCceeEEEEhhhhhhccCHHHHHHHHHHHcCCC
Confidence 23468999998765 2333334444445554
No 111
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.90 E-value=1e-08 Score=89.66 Aligned_cols=98 Identities=15% Similarity=0.058 Sum_probs=70.9
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHH---HHhhcCCCeEEEEcCCCCchhhc---ccCCCc
Q 024665 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLV---NMAKKRTNVIPIIEDARHPAKYR---MLVGMV 214 (264)
Q Consensus 141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~---~~a~~~~nV~~i~~D~~~~~~~~---~~~~~f 214 (264)
+.+..+|||+||++|+.++.++..+.+.++|+++|+++++++.+. +.+....+|+++++|+.+..+.- ...++|
T Consensus 66 ~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~f 145 (234)
T PLN02781 66 IMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEF 145 (234)
T ss_pred HhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCC
Confidence 566789999999999999999998877899999999987654333 33333457999999998754210 013589
Q ss_pred cEEEEcCCC--chHHHHHHHHHhCCC
Q 024665 215 DVIFSDVAQ--PDQVCFLCLILFQPI 238 (264)
Q Consensus 215 D~V~~d~p~--~~~~~~~~~~~l~~~ 238 (264)
|+||+|... ........+..++|+
T Consensus 146 D~VfiDa~k~~y~~~~~~~~~ll~~G 171 (234)
T PLN02781 146 DFAFVDADKPNYVHFHEQLLKLVKVG 171 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHHhcCCC
Confidence 999999862 233444445556665
No 112
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.90 E-value=9.8e-09 Score=90.24 Aligned_cols=95 Identities=19% Similarity=0.181 Sum_probs=65.7
Q ss_pred HHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHh---hcCCCeEEEEcCCCC
Q 024665 127 KLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMA---KKRTNVIPIIEDARH 203 (264)
Q Consensus 127 ~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a---~~~~nV~~i~~D~~~ 203 (264)
.+...++..+.+......+.+||+|||||.+++.++..+. .+.|+|||.|+.++.-..+++ .....|.+++.+.+.
T Consensus 132 E~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~-~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~ 210 (328)
T KOG2904|consen 132 EWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLP-QCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMES 210 (328)
T ss_pred HHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCC-CceEEEEeccHHHHHHHHHHHHHHhhcCceEEEeccccc
Confidence 3445555555444344556999999999999999998875 889999999987754444433 333478888554432
Q ss_pred --chhhcccCCCccEEEEcCC
Q 024665 204 --PAKYRMLVGMVDVIFSDVA 222 (264)
Q Consensus 204 --~~~~~~~~~~fD~V~~d~p 222 (264)
..++..+.++.|++++|||
T Consensus 211 d~~~~~~l~~~~~dllvsNPP 231 (328)
T KOG2904|consen 211 DASDEHPLLEGKIDLLVSNPP 231 (328)
T ss_pred ccccccccccCceeEEecCCC
Confidence 1122245679999999999
No 113
>PHA03411 putative methyltransferase; Provisional
Probab=98.89 E-value=6.8e-09 Score=92.27 Aligned_cols=74 Identities=18% Similarity=0.041 Sum_probs=58.6
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEc
Q 024665 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSD 220 (264)
Q Consensus 141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d 220 (264)
.++..+|||+|||+|.+++.++.... ..+|+++|+|+.+++.+.+. .+++++++.|+.++. ...+||+|++|
T Consensus 62 ~~~~grVLDLGcGsGilsl~la~r~~-~~~V~gVDisp~al~~Ar~n---~~~v~~v~~D~~e~~----~~~kFDlIIsN 133 (279)
T PHA03411 62 AHCTGKVLDLCAGIGRLSFCMLHRCK-PEKIVCVELNPEFARIGKRL---LPEAEWITSDVFEFE----SNEKFDVVISN 133 (279)
T ss_pred cccCCeEEEcCCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHh---CcCCEEEECchhhhc----ccCCCcEEEEc
Confidence 44567999999999999999988742 45899999999886544332 247999999998754 23589999999
Q ss_pred CC
Q 024665 221 VA 222 (264)
Q Consensus 221 ~p 222 (264)
+|
T Consensus 134 PP 135 (279)
T PHA03411 134 PP 135 (279)
T ss_pred CC
Confidence 99
No 114
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.89 E-value=4.6e-09 Score=88.57 Aligned_cols=100 Identities=21% Similarity=0.095 Sum_probs=64.3
Q ss_pred CCcchHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhh---cCCCeEEEE
Q 024665 122 NPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAK---KRTNVIPII 198 (264)
Q Consensus 122 ~p~~s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~---~~~nV~~i~ 198 (264)
.|...+.=..+.+.|... .-++.+||||+||||.+++.++.+ .+.+|+.||.++++++.+.++.. ...++++++
T Consensus 22 RPT~drvrealFniL~~~-~~~g~~vLDLFaGSGalGlEALSR--GA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~ 98 (183)
T PF03602_consen 22 RPTTDRVREALFNILQPR-NLEGARVLDLFAGSGALGLEALSR--GAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIK 98 (183)
T ss_dssp -SSSHHHHHHHHHHHHCH--HTT-EEEETT-TTSHHHHHHHHT--T-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEE
T ss_pred CCCcHHHHHHHHHHhccc-ccCCCeEEEcCCccCccHHHHHhc--CCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeec
Confidence 344555666666666622 257999999999999999988777 56799999999877544444333 223699999
Q ss_pred cCCCCchhh-cccCCCccEEEEcCCCc
Q 024665 199 EDARHPAKY-RMLVGMVDVIFSDVAQP 224 (264)
Q Consensus 199 ~D~~~~~~~-~~~~~~fD~V~~d~p~~ 224 (264)
.|+...... .....+||+||+|||..
T Consensus 99 ~d~~~~l~~~~~~~~~fDiIflDPPY~ 125 (183)
T PF03602_consen 99 GDAFKFLLKLAKKGEKFDIIFLDPPYA 125 (183)
T ss_dssp SSHHHHHHHHHHCTS-EEEEEE--STT
T ss_pred cCHHHHHHhhcccCCCceEEEECCCcc
Confidence 998765432 11346899999999943
No 115
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.88 E-value=1.1e-08 Score=84.84 Aligned_cols=75 Identities=16% Similarity=0.255 Sum_probs=64.8
Q ss_pred CCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCC-CeEEEEcCCCCchhhcccCCCccEEEEcCC
Q 024665 144 GARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRT-NVIPIIEDARHPAKYRMLVGMVDVIFSDVA 222 (264)
Q Consensus 144 g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~-nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p 222 (264)
-+.+||+|||||..+..|+....+.....++|+++++.+.-.+.|+.+. ++.+++.|..+... .+++|+++.|+|
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l~----~~~VDvLvfNPP 119 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGLR----NESVDVLVFNPP 119 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhhc----cCCccEEEECCC
Confidence 5789999999999999999999999999999999988777677776543 78999999887542 389999999999
No 116
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=98.88 E-value=1.4e-08 Score=91.30 Aligned_cols=73 Identities=23% Similarity=0.257 Sum_probs=57.1
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC-CCeEEEEcCCCCchhhcccCCCccEEEEcC
Q 024665 143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRMLVGMVDVIFSDV 221 (264)
Q Consensus 143 ~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~-~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~ 221 (264)
+..+|||+|||+|..++.+|.. ..+|+|+|+|+.+++.+.+.+... .++++++.|+.... +.++||+|++..
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~---g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~----~~~~fD~I~~~~ 192 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALL---GFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSAS----IQEEYDFILSTV 192 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhccc----ccCCccEEEEcc
Confidence 3459999999999999999985 358999999998877666555433 37889999986643 246899999865
Q ss_pred C
Q 024665 222 A 222 (264)
Q Consensus 222 p 222 (264)
.
T Consensus 193 v 193 (287)
T PRK12335 193 V 193 (287)
T ss_pred h
Confidence 3
No 117
>PRK05785 hypothetical protein; Provisional
Probab=98.87 E-value=1.4e-08 Score=88.43 Aligned_cols=86 Identities=14% Similarity=0.086 Sum_probs=63.0
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEcC
Q 024665 142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDV 221 (264)
Q Consensus 142 ~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~ 221 (264)
.++.+|||+|||||.++..+++.. ..+|+++|+|+.|++...+ + ..++++|+.+++ ...++||+|++..
T Consensus 50 ~~~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~----~--~~~~~~d~~~lp---~~d~sfD~v~~~~ 118 (226)
T PRK05785 50 GRPKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLV----A--DDKVVGSFEALP---FRDKSFDVVMSSF 118 (226)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHh----c--cceEEechhhCC---CCCCCEEEEEecC
Confidence 357899999999999999999875 3589999999988644332 2 246788988764 3457999999865
Q ss_pred C-----CchHHHHHHHHHhCCC
Q 024665 222 A-----QPDQVCFLCLILFQPI 238 (264)
Q Consensus 222 p-----~~~~~~~~~~~~l~~~ 238 (264)
. .+.+........++|.
T Consensus 119 ~l~~~~d~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 119 ALHASDNIEKVIAEFTRVSRKQ 140 (226)
T ss_pred hhhccCCHHHHHHHHHHHhcCc
Confidence 4 4455555555666653
No 118
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.87 E-value=7.7e-09 Score=96.08 Aligned_cols=76 Identities=20% Similarity=0.041 Sum_probs=58.8
Q ss_pred CEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC--CCeEEEEcCCCCchhhccc------------
Q 024665 145 ARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRML------------ 210 (264)
Q Consensus 145 ~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~--~nV~~i~~D~~~~~~~~~~------------ 210 (264)
.+|||++||+|++++.+|... .+|++||+++.+++.+.+++..+ .|+++++.|+.+..+....
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~---~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~ 284 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNF---RRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDL 284 (362)
T ss_pred CeEEEEeccccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcccccccccccc
Confidence 579999999999999999874 38999999998887666655443 3899999999775421000
Q ss_pred -CCCccEEEEcCCC
Q 024665 211 -VGMVDVIFSDVAQ 223 (264)
Q Consensus 211 -~~~fD~V~~d~p~ 223 (264)
..+||+||+|||.
T Consensus 285 ~~~~~D~v~lDPPR 298 (362)
T PRK05031 285 KSYNFSTIFVDPPR 298 (362)
T ss_pred cCCCCCEEEECCCC
Confidence 1258999999994
No 119
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.86 E-value=2.3e-08 Score=88.34 Aligned_cols=87 Identities=16% Similarity=0.144 Sum_probs=67.9
Q ss_pred hHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCch
Q 024665 126 SKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPA 205 (264)
Q Consensus 126 s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~ 205 (264)
..++..++..+. +.++++|||+|||+|.+|..|++... .|+++|+++++++.+.+......|+++++.|+.+.+
T Consensus 15 ~~i~~~i~~~~~---~~~~~~VLEiG~G~G~lt~~L~~~~~---~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~ 88 (253)
T TIGR00755 15 ESVIQKIVEAAN---VLEGDVVLEIGPGLGALTEPLLKRAK---KVTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVD 88 (253)
T ss_pred HHHHHHHHHhcC---CCCcCEEEEeCCCCCHHHHHHHHhCC---cEEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCC
Confidence 345666665554 77889999999999999999999853 699999999887766554433468999999998865
Q ss_pred hhcccCCCcc---EEEEcCCC
Q 024665 206 KYRMLVGMVD---VIFSDVAQ 223 (264)
Q Consensus 206 ~~~~~~~~fD---~V~~d~p~ 223 (264)
. ..+| +|++|+|.
T Consensus 89 ~-----~~~d~~~~vvsNlPy 104 (253)
T TIGR00755 89 L-----PDFPKQLKVVSNLPY 104 (253)
T ss_pred h-----hHcCCcceEEEcCCh
Confidence 2 2355 99999994
No 120
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.86 E-value=3.7e-08 Score=94.45 Aligned_cols=94 Identities=18% Similarity=0.151 Sum_probs=70.3
Q ss_pred CCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc-CCCeEEEEcCCCCchhhcccCCCccEEE
Q 024665 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK-RTNVIPIIEDARHPAKYRMLVGMVDVIF 218 (264)
Q Consensus 140 ~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~-~~nV~~i~~D~~~~~~~~~~~~~fD~V~ 218 (264)
.++++.+|||+|||+|.++..++... ..+|+++|+|+.+++...+.+.. ..+|++++.|+.+.+ ...++||+|+
T Consensus 263 ~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~---~~~~~fD~I~ 337 (475)
T PLN02336 263 DLKPGQKVLDVGCGIGGGDFYMAENF--DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKT---YPDNSFDVIY 337 (475)
T ss_pred CCCCCCEEEEEeccCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCC---CCCCCEEEEE
Confidence 36788999999999999999999875 45899999999886655444432 347999999998754 1246899999
Q ss_pred EcCC-----CchHHHHHHHHHhCCC
Q 024665 219 SDVA-----QPDQVCFLCLILFQPI 238 (264)
Q Consensus 219 ~d~p-----~~~~~~~~~~~~l~~~ 238 (264)
+... .+........+.++|+
T Consensus 338 s~~~l~h~~d~~~~l~~~~r~Lkpg 362 (475)
T PLN02336 338 SRDTILHIQDKPALFRSFFKWLKPG 362 (475)
T ss_pred ECCcccccCCHHHHHHHHHHHcCCC
Confidence 8644 3455555666666666
No 121
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.85 E-value=9.4e-09 Score=103.08 Aligned_cols=79 Identities=20% Similarity=0.036 Sum_probs=60.9
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhh---cC-CCeEEEEcCCCCchhhcccCCCccE
Q 024665 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAK---KR-TNVIPIIEDARHPAKYRMLVGMVDV 216 (264)
Q Consensus 141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~---~~-~nV~~i~~D~~~~~~~~~~~~~fD~ 216 (264)
+.++.+|||+|||+|.++++++.. ...+|++||+|+.+++.+.+++. .. .+++++++|+.++... ...+||+
T Consensus 536 ~~~g~rVLDlf~gtG~~sl~aa~~--Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~--~~~~fDl 611 (702)
T PRK11783 536 MAKGKDFLNLFAYTGTASVHAALG--GAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKE--AREQFDL 611 (702)
T ss_pred hcCCCeEEEcCCCCCHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHH--cCCCcCE
Confidence 345789999999999999999975 45589999999877654444433 22 3799999999875431 2468999
Q ss_pred EEEcCCC
Q 024665 217 IFSDVAQ 223 (264)
Q Consensus 217 V~~d~p~ 223 (264)
|++|||.
T Consensus 612 IilDPP~ 618 (702)
T PRK11783 612 IFIDPPT 618 (702)
T ss_pred EEECCCC
Confidence 9999993
No 122
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.85 E-value=7.5e-09 Score=96.49 Aligned_cols=77 Identities=21% Similarity=0.111 Sum_probs=60.4
Q ss_pred CCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHH---HHHHHhhcC-CCeEEEEcCCCCchhhccc-CCCccEEE
Q 024665 144 GARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGR---DLVNMAKKR-TNVIPIIEDARHPAKYRML-VGMVDVIF 218 (264)
Q Consensus 144 g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~---~l~~~a~~~-~nV~~i~~D~~~~~~~~~~-~~~fD~V~ 218 (264)
|.+|||++|=||.+|+++|.- .+.+|+.||+|..+++ ++.+.|... ..+.++++|+.+...+..- ..+||+||
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~g--GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIi 295 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALG--GASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLII 295 (393)
T ss_pred CCeEEEecccCcHHHHHHHhc--CCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEE
Confidence 999999999999999999964 5669999999987754 444444432 2689999999987654222 23899999
Q ss_pred EcCC
Q 024665 219 SDVA 222 (264)
Q Consensus 219 ~d~p 222 (264)
+|||
T Consensus 296 lDPP 299 (393)
T COG1092 296 LDPP 299 (393)
T ss_pred ECCc
Confidence 9999
No 123
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=98.85 E-value=5.8e-09 Score=88.88 Aligned_cols=91 Identities=18% Similarity=0.197 Sum_probs=70.0
Q ss_pred CCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEE
Q 024665 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFS 219 (264)
Q Consensus 140 ~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~ 219 (264)
.+.+-.+|.|||||+|..|..|+++. |...|+++|.|+.|+++. +...+|++|.++|+.+..+ ...+|+|++
T Consensus 27 p~~~~~~v~DLGCGpGnsTelL~~Rw-P~A~i~GiDsS~~Mla~A---a~rlp~~~f~~aDl~~w~p----~~~~dllfa 98 (257)
T COG4106 27 PLERPRRVVDLGCGPGNSTELLARRW-PDAVITGIDSSPAMLAKA---AQRLPDATFEEADLRTWKP----EQPTDLLFA 98 (257)
T ss_pred CccccceeeecCCCCCHHHHHHHHhC-CCCeEeeccCCHHHHHHH---HHhCCCCceecccHhhcCC----CCccchhhh
Confidence 47777899999999999999999997 688999999999885332 2334599999999998753 468999999
Q ss_pred cCC---Cch--HHHHHHHHHhCCC
Q 024665 220 DVA---QPD--QVCFLCLILFQPI 238 (264)
Q Consensus 220 d~p---~~~--~~~~~~~~~l~~~ 238 (264)
|.. -|+ ......+..+.|+
T Consensus 99 NAvlqWlpdH~~ll~rL~~~L~Pg 122 (257)
T COG4106 99 NAVLQWLPDHPELLPRLVSQLAPG 122 (257)
T ss_pred hhhhhhccccHHHHHHHHHhhCCC
Confidence 987 233 3334445555665
No 124
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.84 E-value=3.2e-08 Score=83.16 Aligned_cols=97 Identities=21% Similarity=0.078 Sum_probs=68.9
Q ss_pred chHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHh---hcCCCeEEEEcCC
Q 024665 125 RSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMA---KKRTNVIPIIEDA 201 (264)
Q Consensus 125 ~s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a---~~~~nV~~i~~D~ 201 (264)
..+.=..+.+.|... --++.+|||+.||||.+++.++.+ .+.+|+.||.+.++...+.++. ....+++++..|+
T Consensus 26 ~drVREalFNil~~~-~i~g~~~LDlFAGSGaLGlEAlSR--GA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da 102 (187)
T COG0742 26 TDRVREALFNILAPD-EIEGARVLDLFAGSGALGLEALSR--GAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDA 102 (187)
T ss_pred chHHHHHHHHhcccc-ccCCCEEEEecCCccHhHHHHHhC--CCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecH
Confidence 344445555555511 257899999999999999999988 5679999999987754444433 3335899999999
Q ss_pred CCchhhcccCCCccEEEEcCCCc
Q 024665 202 RHPAKYRMLVGMVDVIFSDVAQP 224 (264)
Q Consensus 202 ~~~~~~~~~~~~fD~V~~d~p~~ 224 (264)
....+.....++||+||+|||..
T Consensus 103 ~~~L~~~~~~~~FDlVflDPPy~ 125 (187)
T COG0742 103 LRALKQLGTREPFDLVFLDPPYA 125 (187)
T ss_pred HHHHHhcCCCCcccEEEeCCCCc
Confidence 85433211122499999999954
No 125
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.83 E-value=1.9e-08 Score=96.45 Aligned_cols=78 Identities=27% Similarity=0.319 Sum_probs=60.7
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEc
Q 024665 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSD 220 (264)
Q Consensus 141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d 220 (264)
..++.+|||+|||+|.++..+++.. .+|+++|+++.+++...+.+....|+++++.|+.+... ....++||+|+++
T Consensus 35 ~~~~~~vLDlGcG~G~~~~~la~~~---~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~-~~~~~~fD~I~~~ 110 (475)
T PLN02336 35 PYEGKSVLELGAGIGRFTGELAKKA---GQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDL-NISDGSVDLIFSN 110 (475)
T ss_pred ccCCCEEEEeCCCcCHHHHHHHhhC---CEEEEEeCCHHHHHHHHHHhccCCceEEEEeccccccc-CCCCCCEEEEehh
Confidence 5577899999999999999999874 38999999999876655544444689999999974321 1234689999987
Q ss_pred CC
Q 024665 221 VA 222 (264)
Q Consensus 221 ~p 222 (264)
.+
T Consensus 111 ~~ 112 (475)
T PLN02336 111 WL 112 (475)
T ss_pred hh
Confidence 65
No 126
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=98.83 E-value=4.5e-08 Score=90.01 Aligned_cols=92 Identities=14% Similarity=0.045 Sum_probs=67.2
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEcC
Q 024665 142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDV 221 (264)
Q Consensus 142 ~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~ 221 (264)
.++.+|||+|||+|.++..+++.+ +..+|+++|+|+.+++.+.+... ..+++++++|+.+.+ ...+.||+|++..
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~-~~~~VtgVD~S~~mL~~A~~k~~-~~~i~~i~gD~e~lp---~~~~sFDvVIs~~ 186 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEP-LKECKIIEGDAEDLP---FPTDYADRYVSAG 186 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhhh-ccCCeEEeccHHhCC---CCCCceeEEEEcC
Confidence 578899999999999999999876 34689999999988655544332 347899999998754 2346899999864
Q ss_pred C-----CchHHHHHHHHHhCCC
Q 024665 222 A-----QPDQVCFLCLILFQPI 238 (264)
Q Consensus 222 p-----~~~~~~~~~~~~l~~~ 238 (264)
. .+........+.++|+
T Consensus 187 ~L~~~~d~~~~L~e~~rvLkPG 208 (340)
T PLN02490 187 SIEYWPDPQRGIKEAYRVLKIG 208 (340)
T ss_pred hhhhCCCHHHHHHHHHHhcCCC
Confidence 3 3334444455555555
No 127
>PRK06922 hypothetical protein; Provisional
Probab=98.83 E-value=2e-08 Score=98.35 Aligned_cols=80 Identities=16% Similarity=0.188 Sum_probs=62.0
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc-CCCeEEEEcCCCCchhhcccCCCccEEEE
Q 024665 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK-RTNVIPIIEDARHPAKYRMLVGMVDVIFS 219 (264)
Q Consensus 141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~-~~nV~~i~~D~~~~~~~~~~~~~fD~V~~ 219 (264)
+.++.+|||+|||+|.++..++... +..+|+++|+|+.|++.+.+.... ..++.++++|+.+++.+ ...++||+|++
T Consensus 416 ~~~g~rVLDIGCGTG~ls~~LA~~~-P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~-fedeSFDvVVs 493 (677)
T PRK06922 416 YIKGDTIVDVGAGGGVMLDMIEEET-EDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSS-FEKESVDTIVY 493 (677)
T ss_pred hcCCCEEEEeCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccc-cCCCCEEEEEE
Confidence 4578899999999999999999875 678999999999887665554322 24788999999875421 23468999998
Q ss_pred cCC
Q 024665 220 DVA 222 (264)
Q Consensus 220 d~p 222 (264)
+.+
T Consensus 494 n~v 496 (677)
T PRK06922 494 SSI 496 (677)
T ss_pred chH
Confidence 754
No 128
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=98.82 E-value=1.4e-08 Score=92.76 Aligned_cols=83 Identities=24% Similarity=0.251 Sum_probs=61.4
Q ss_pred CCCCCCEEEEEcccCChHHHHHHHHhCC---CCEEEEEeCChHHHHHHHHHhhcC--CCeEEEEcCCCCchhhc------
Q 024665 140 WIKPGARVLYLGAASGTTVSHVSDIVGP---NGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYR------ 208 (264)
Q Consensus 140 ~l~~g~~VLDlG~G~G~~s~~la~~~~~---~g~V~avD~s~~~~~~l~~~a~~~--~nV~~i~~D~~~~~~~~------ 208 (264)
.++|+++|||+||++|..|..|.+.+.. .+.|+|.|++..-+..++...+.. +|+.+...|+...+...
T Consensus 152 ~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~~ 231 (375)
T KOG2198|consen 152 GVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDGND 231 (375)
T ss_pred ccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccccCch
Confidence 5999999999999999999999887753 258999999954333444444332 37888888887655321
Q ss_pred ccCCCccEEEEcCC
Q 024665 209 MLVGMVDVIFSDVA 222 (264)
Q Consensus 209 ~~~~~fD~V~~d~p 222 (264)
....+||.|++|+|
T Consensus 232 ~~~~~fDrVLvDVP 245 (375)
T KOG2198|consen 232 KEQLKFDRVLVDVP 245 (375)
T ss_pred hhhhhcceeEEecc
Confidence 12348999999999
No 129
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.82 E-value=5.3e-08 Score=91.01 Aligned_cols=92 Identities=16% Similarity=-0.016 Sum_probs=66.4
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC--CCeEEEEcCCCCchhhcccCCCccEEEEc
Q 024665 143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIFSD 220 (264)
Q Consensus 143 ~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~--~nV~~i~~D~~~~~~~~~~~~~fD~V~~d 220 (264)
++.+|||++||+|..++.+|...+ ..+|+++|+++.+++.+.+++..+ .++++++.|+..+... ...||+|++|
T Consensus 57 ~~~~vLDl~aGsG~~~l~~a~~~~-~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~---~~~fD~V~lD 132 (382)
T PRK04338 57 PRESVLDALSASGIRGIRYALETG-VEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHE---ERKFDVVDID 132 (382)
T ss_pred CCCEEEECCCcccHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhh---cCCCCEEEEC
Confidence 357899999999999999998764 458999999988865554444332 3678999999764321 3579999999
Q ss_pred CC-CchHHHHHHHHHhCCC
Q 024665 221 VA-QPDQVCFLCLILFQPI 238 (264)
Q Consensus 221 ~p-~~~~~~~~~~~~l~~~ 238 (264)
|+ .+......++..+.+.
T Consensus 133 P~Gs~~~~l~~al~~~~~~ 151 (382)
T PRK04338 133 PFGSPAPFLDSAIRSVKRG 151 (382)
T ss_pred CCCCcHHHHHHHHHHhcCC
Confidence 98 3334444445555555
No 130
>PLN02476 O-methyltransferase
Probab=98.81 E-value=3.5e-08 Score=88.22 Aligned_cols=98 Identities=19% Similarity=0.104 Sum_probs=71.7
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHH---HHHHHHHhhcCCCeEEEEcCCCCchhhc---ccCCCc
Q 024665 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRS---GRDLVNMAKKRTNVIPIIEDARHPAKYR---MLVGMV 214 (264)
Q Consensus 141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~---~~~l~~~a~~~~nV~~i~~D~~~~~~~~---~~~~~f 214 (264)
+.+..+|||+||++|+.++.+|..+.+.++|+++|.+++. ++++++.+...++|+++++|+.+..+.- ...++|
T Consensus 116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~F 195 (278)
T PLN02476 116 ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSY 195 (278)
T ss_pred hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCC
Confidence 5567899999999999999999988888999999999765 3444455555568999999998854320 013589
Q ss_pred cEEEEcCCC--chHHHHHHHHHhCCC
Q 024665 215 DVIFSDVAQ--PDQVCFLCLILFQPI 238 (264)
Q Consensus 215 D~V~~d~p~--~~~~~~~~~~~l~~~ 238 (264)
|+||.|.+. ........+..++++
T Consensus 196 D~VFIDa~K~~Y~~y~e~~l~lL~~G 221 (278)
T PLN02476 196 DFAFVDADKRMYQDYFELLLQLVRVG 221 (278)
T ss_pred CEEEECCCHHHHHHHHHHHHHhcCCC
Confidence 999999883 233334444555555
No 131
>PRK04457 spermidine synthase; Provisional
Probab=98.81 E-value=7e-08 Score=85.83 Aligned_cols=78 Identities=18% Similarity=0.118 Sum_probs=61.1
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc---CCCeEEEEcCCCCchhhcccCCCccEEE
Q 024665 142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK---RTNVIPIIEDARHPAKYRMLVGMVDVIF 218 (264)
Q Consensus 142 ~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~---~~nV~~i~~D~~~~~~~~~~~~~fD~V~ 218 (264)
.+..+|||||||+|+++..++... |..+|++||+++.+++.+.+.... .++++++++|+.+... ...++||+|+
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~--~~~~~yD~I~ 141 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYL-PDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIA--VHRHSTDVIL 141 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHH--hCCCCCCEEE
Confidence 355789999999999999999886 678999999999887555444322 2589999999987643 2346899999
Q ss_pred EcCC
Q 024665 219 SDVA 222 (264)
Q Consensus 219 ~d~p 222 (264)
+|.-
T Consensus 142 ~D~~ 145 (262)
T PRK04457 142 VDGF 145 (262)
T ss_pred EeCC
Confidence 9864
No 132
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.80 E-value=1.1e-07 Score=82.21 Aligned_cols=95 Identities=20% Similarity=0.220 Sum_probs=68.3
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc---CCCeEEEEcCCCCchhhcccCCCccEE
Q 024665 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK---RTNVIPIIEDARHPAKYRMLVGMVDVI 217 (264)
Q Consensus 141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~---~~nV~~i~~D~~~~~~~~~~~~~fD~V 217 (264)
+.++.+|||+|||+|.++..++....+..+|+++|+++.+++.+.+.... ..++.+++.|+.+.. ...+.||+|
T Consensus 49 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~D~I 125 (239)
T PRK00216 49 VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALP---FPDNSFDAV 125 (239)
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCC---CCCCCccEE
Confidence 66789999999999999999999864357999999999887665554433 247999999998754 234689999
Q ss_pred EEcCC-----CchHHHHHHHHHhCCC
Q 024665 218 FSDVA-----QPDQVCFLCLILFQPI 238 (264)
Q Consensus 218 ~~d~p-----~~~~~~~~~~~~l~~~ 238 (264)
++... .+..........+.+.
T Consensus 126 ~~~~~l~~~~~~~~~l~~~~~~L~~g 151 (239)
T PRK00216 126 TIAFGLRNVPDIDKALREMYRVLKPG 151 (239)
T ss_pred EEecccccCCCHHHHHHHHHHhccCC
Confidence 87533 3333333444444444
No 133
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=98.80 E-value=4e-08 Score=84.65 Aligned_cols=71 Identities=25% Similarity=0.250 Sum_probs=56.6
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC---CCeEEEEcCCCCchhhcccCCCccEE
Q 024665 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAKYRMLVGMVDVI 217 (264)
Q Consensus 141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~---~nV~~i~~D~~~~~~~~~~~~~fD~V 217 (264)
+.++.+|||+|||+|.++..++.. ..+|+++|+|+.++..+.+..... .++++++.|+.+.+ ++||+|
T Consensus 53 ~~~~~~vLDiGcG~G~~~~~la~~---~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~------~~fD~i 123 (219)
T TIGR02021 53 PLKGKRVLDAGCGTGLLSIELAKR---GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC------GEFDIV 123 (219)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC------CCcCEE
Confidence 457889999999999999999875 348999999998876655554332 37999999987643 689999
Q ss_pred EEc
Q 024665 218 FSD 220 (264)
Q Consensus 218 ~~d 220 (264)
++.
T Consensus 124 i~~ 126 (219)
T TIGR02021 124 VCM 126 (219)
T ss_pred EEh
Confidence 863
No 134
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.80 E-value=1.8e-08 Score=93.29 Aligned_cols=76 Identities=18% Similarity=0.059 Sum_probs=58.5
Q ss_pred CEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC--CCeEEEEcCCCCchhhc-c---c---C----
Q 024665 145 ARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYR-M---L---V---- 211 (264)
Q Consensus 145 ~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~--~nV~~i~~D~~~~~~~~-~---~---~---- 211 (264)
.+|||++||+|.+++.+|+.+. +|++||+++++++.+.+++..+ .|++++++|+.+..... . + .
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~~---~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 275 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNFR---RVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDL 275 (353)
T ss_pred CcEEEEeccccHHHHHHHHhCC---EEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhcccccccccccc
Confidence 4799999999999999998853 8999999998877666655444 38999999997754310 0 0 1
Q ss_pred --CCccEEEEcCCC
Q 024665 212 --GMVDVIFSDVAQ 223 (264)
Q Consensus 212 --~~fD~V~~d~p~ 223 (264)
..||+|++|||.
T Consensus 276 ~~~~~d~v~lDPPR 289 (353)
T TIGR02143 276 KSYNCSTIFVDPPR 289 (353)
T ss_pred ccCCCCEEEECCCC
Confidence 138999999993
No 135
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=98.78 E-value=5.1e-08 Score=86.98 Aligned_cols=90 Identities=11% Similarity=0.072 Sum_probs=63.1
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCC--CEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEE
Q 024665 141 IKPGARVLYLGAASGTTVSHVSDIVGPN--GVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIF 218 (264)
Q Consensus 141 l~~g~~VLDlG~G~G~~s~~la~~~~~~--g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~ 218 (264)
..+..+|||+|||+|.++..+++.+... ..|+++|+|+.+++.+.+ ..+++.++++|+.+++ ...++||+|+
T Consensus 83 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~---~~~~~~~~~~d~~~lp---~~~~sfD~I~ 156 (272)
T PRK11088 83 DEKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAK---RYPQVTFCVASSHRLP---FADQSLDAII 156 (272)
T ss_pred CCCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHH---hCCCCeEEEeecccCC---CcCCceeEEE
Confidence 3456789999999999999999876432 379999999977544322 2358999999998754 2356899999
Q ss_pred EcCCCchHHHHHHHHHhCCC
Q 024665 219 SDVAQPDQVCFLCLILFQPI 238 (264)
Q Consensus 219 ~d~p~~~~~~~~~~~~l~~~ 238 (264)
+.... . ......+.++|+
T Consensus 157 ~~~~~-~-~~~e~~rvLkpg 174 (272)
T PRK11088 157 RIYAP-C-KAEELARVVKPG 174 (272)
T ss_pred EecCC-C-CHHHHHhhccCC
Confidence 75542 1 122334455554
No 136
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=98.78 E-value=7.2e-08 Score=88.25 Aligned_cols=92 Identities=15% Similarity=0.075 Sum_probs=64.8
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhh---cCCCeEEEEcCCCCchhhcccCCCccEE
Q 024665 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAK---KRTNVIPIIEDARHPAKYRMLVGMVDVI 217 (264)
Q Consensus 141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~---~~~nV~~i~~D~~~~~~~~~~~~~fD~V 217 (264)
..++.+|||||||+|.++..++.. + ...|+++|.|+.++.+....+. ...+|+++..|+.+.+. .+.||+|
T Consensus 120 ~l~g~~VLDIGCG~G~~~~~la~~-g-~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~----~~~FD~V 193 (322)
T PRK15068 120 PLKGRTVLDVGCGNGYHMWRMLGA-G-AKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA----LKAFDTV 193 (322)
T ss_pred CCCCCEEEEeccCCcHHHHHHHHc-C-CCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC----cCCcCEE
Confidence 456789999999999999999987 3 3479999999877544322222 13489999999987652 4689999
Q ss_pred EEcCC-----CchHHHHHHHHHhCCC
Q 024665 218 FSDVA-----QPDQVCFLCLILFQPI 238 (264)
Q Consensus 218 ~~d~p-----~~~~~~~~~~~~l~~~ 238 (264)
++.-. .|........+.++|+
T Consensus 194 ~s~~vl~H~~dp~~~L~~l~~~LkpG 219 (322)
T PRK15068 194 FSMGVLYHRRSPLDHLKQLKDQLVPG 219 (322)
T ss_pred EECChhhccCCHHHHHHHHHHhcCCC
Confidence 98532 3444444455555554
No 137
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=98.78 E-value=1.6e-08 Score=88.46 Aligned_cols=86 Identities=15% Similarity=0.172 Sum_probs=63.0
Q ss_pred CCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCC----C----eEEEEcCCCCchhhcccCCCcc
Q 024665 144 GARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRT----N----VIPIIEDARHPAKYRMLVGMVD 215 (264)
Q Consensus 144 g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~----n----V~~i~~D~~~~~~~~~~~~~fD 215 (264)
|.+|||+|||.|.+|.+||+. ...|+|||.++.+++.+.+.++..+ + +++.+.|+.... ++||
T Consensus 90 g~~ilDvGCGgGLLSepLArl---ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~------~~fD 160 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARL---GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT------GKFD 160 (282)
T ss_pred CceEEEeccCccccchhhHhh---CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc------cccc
Confidence 588999999999999999988 3589999999988777666644433 2 556666766543 5699
Q ss_pred EEEEcCC-----CchHHHHHHHHHhCCC
Q 024665 216 VIFSDVA-----QPDQVCFLCLILFQPI 238 (264)
Q Consensus 216 ~V~~d~p-----~~~~~~~~~~~~l~~~ 238 (264)
+|+|-.. .|..........++|.
T Consensus 161 aVvcsevleHV~dp~~~l~~l~~~lkP~ 188 (282)
T KOG1270|consen 161 AVVCSEVLEHVKDPQEFLNCLSALLKPN 188 (282)
T ss_pred eeeeHHHHHHHhCHHHHHHHHHHHhCCC
Confidence 9998543 4555555555566666
No 138
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=98.78 E-value=9.4e-09 Score=85.72 Aligned_cols=89 Identities=33% Similarity=0.437 Sum_probs=65.1
Q ss_pred chHHHHHHHhccccc-CCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEc-CCC
Q 024665 125 RSKLAAAVLGGVDNI-WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIE-DAR 202 (264)
Q Consensus 125 ~s~l~~~il~~l~~~-~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~-D~~ 202 (264)
++.-+-+++..=+.. .++|+++|||+||++|+|+..+.+++.|.+.|.+||+.+-. . -.-+.++++ |++
T Consensus 50 R~RsAFKLiEindKy~~l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~--------p-~~Ga~~i~~~dvt 120 (232)
T KOG4589|consen 50 RSRSAFKLIEINDKYRFLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIE--------P-PEGATIIQGNDVT 120 (232)
T ss_pred hhhhhhhheeehhhccccCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeecc--------C-CCCcccccccccC
Confidence 444444444332333 47899999999999999999999999999999999998611 1 124566666 898
Q ss_pred Cchhhcc-----cCCCccEEEEcCC
Q 024665 203 HPAKYRM-----LVGMVDVIFSDVA 222 (264)
Q Consensus 203 ~~~~~~~-----~~~~fD~V~~d~p 222 (264)
++..+.. ..-.+|+|++|+.
T Consensus 121 dp~~~~ki~e~lp~r~VdvVlSDMa 145 (232)
T KOG4589|consen 121 DPETYRKIFEALPNRPVDVVLSDMA 145 (232)
T ss_pred CHHHHHHHHHhCCCCcccEEEeccC
Confidence 8764422 2237999999998
No 139
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=98.77 E-value=3.1e-08 Score=85.49 Aligned_cols=74 Identities=18% Similarity=0.177 Sum_probs=56.4
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc--------------CCCeEEEEcCCCCchh
Q 024665 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK--------------RTNVIPIIEDARHPAK 206 (264)
Q Consensus 141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~--------------~~nV~~i~~D~~~~~~ 206 (264)
+.++.+|||+|||.|..++.||++ .-.|+|||+|+.+++.+.+.+.. ..+|+++++|+.++..
T Consensus 32 ~~~~~rvLd~GCG~G~da~~LA~~---G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~ 108 (213)
T TIGR03840 32 LPAGARVFVPLCGKSLDLAWLAEQ---GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTA 108 (213)
T ss_pred CCCCCeEEEeCCCchhHHHHHHhC---CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCc
Confidence 467789999999999999999986 34899999999887765443321 2368999999988653
Q ss_pred hcccCCCccEEEE
Q 024665 207 YRMLVGMVDVIFS 219 (264)
Q Consensus 207 ~~~~~~~fD~V~~ 219 (264)
...+.||.|+-
T Consensus 109 --~~~~~fD~i~D 119 (213)
T TIGR03840 109 --ADLGPVDAVYD 119 (213)
T ss_pred --ccCCCcCEEEe
Confidence 12357888874
No 140
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=98.76 E-value=1.3e-07 Score=80.25 Aligned_cols=75 Identities=20% Similarity=0.194 Sum_probs=56.8
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC-CCeEEEEcCCCCchhhcccCCCccEEEE
Q 024665 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRMLVGMVDVIFS 219 (264)
Q Consensus 141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~-~nV~~i~~D~~~~~~~~~~~~~fD~V~~ 219 (264)
+-+..++||||||.|.-++.||++ .-.|+|+|+|+.+++.+.+.+... .+|++.+.|+.+.. +.+.||+|++
T Consensus 28 ~~~~g~~LDlgcG~GRNalyLA~~---G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~----~~~~yD~I~s 100 (192)
T PF03848_consen 28 LLKPGKALDLGCGEGRNALYLASQ---GFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFD----FPEEYDFIVS 100 (192)
T ss_dssp TS-SSEEEEES-TTSHHHHHHHHT---T-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-----TTTEEEEEE
T ss_pred hcCCCcEEEcCCCCcHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhcc----ccCCcCEEEE
Confidence 334569999999999999999987 458999999998887777776544 37999999987754 3468999998
Q ss_pred cCC
Q 024665 220 DVA 222 (264)
Q Consensus 220 d~p 222 (264)
.+.
T Consensus 101 t~v 103 (192)
T PF03848_consen 101 TVV 103 (192)
T ss_dssp ESS
T ss_pred EEE
Confidence 654
No 141
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.76 E-value=7.9e-08 Score=78.90 Aligned_cols=95 Identities=22% Similarity=0.146 Sum_probs=76.0
Q ss_pred CCcchHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCC
Q 024665 122 NPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDA 201 (264)
Q Consensus 122 ~p~~s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~ 201 (264)
.|.++-+|.+++..++ +..+.-|||+|.|+|.+|..+..+.-+...++++|.|++....+ +...+.+++|++|+
T Consensus 30 ~PsSs~lA~~M~s~I~---pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L---~~~~p~~~ii~gda 103 (194)
T COG3963 30 LPSSSILARKMASVID---PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHL---NQLYPGVNIINGDA 103 (194)
T ss_pred cCCcHHHHHHHHhccC---cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHH---HHhCCCccccccch
Confidence 4667888888887766 88888999999999999999988876777899999999875443 33456778999999
Q ss_pred CCchhh--cccCCCccEEEEcCC
Q 024665 202 RHPAKY--RMLVGMVDVIFSDVA 222 (264)
Q Consensus 202 ~~~~~~--~~~~~~fD~V~~d~p 222 (264)
.+...+ ......||+|++-.|
T Consensus 104 ~~l~~~l~e~~gq~~D~viS~lP 126 (194)
T COG3963 104 FDLRTTLGEHKGQFFDSVISGLP 126 (194)
T ss_pred hhHHHHHhhcCCCeeeeEEeccc
Confidence 887632 233457999999988
No 142
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.76 E-value=1.6e-08 Score=83.47 Aligned_cols=75 Identities=17% Similarity=0.055 Sum_probs=48.8
Q ss_pred CEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc---CCCeEEEEcCCCCchhhcccCCCccEEEEcC
Q 024665 145 ARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK---RTNVIPIIEDARHPAKYRMLVGMVDVIFSDV 221 (264)
Q Consensus 145 ~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~---~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~ 221 (264)
+.|||++||.|.-++++|.... +|+|||+++..++-+..++.. ..||+++++|+.+..........+|+||++|
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~~---~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSP 77 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTFD---RVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSP 77 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE--
T ss_pred CEEEEeccCcCHHHHHHHHhCC---eEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECC
Confidence 4799999999999999999854 899999997665444444443 3489999999988654211112289999999
Q ss_pred C
Q 024665 222 A 222 (264)
Q Consensus 222 p 222 (264)
|
T Consensus 78 P 78 (163)
T PF09445_consen 78 P 78 (163)
T ss_dssp -
T ss_pred C
Confidence 9
No 143
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.76 E-value=3.8e-08 Score=85.22 Aligned_cols=74 Identities=15% Similarity=0.118 Sum_probs=56.9
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc--------------CCCeEEEEcCCCCchh
Q 024665 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK--------------RTNVIPIIEDARHPAK 206 (264)
Q Consensus 141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~--------------~~nV~~i~~D~~~~~~ 206 (264)
+.++.+|||+|||.|..++.||++ ...|+|||+|+.+++.+.+.+.. ..+|+++++|+.++..
T Consensus 35 ~~~~~rvL~~gCG~G~da~~LA~~---G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~ 111 (218)
T PRK13255 35 LPAGSRVLVPLCGKSLDMLWLAEQ---GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTA 111 (218)
T ss_pred CCCCCeEEEeCCCChHhHHHHHhC---CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCc
Confidence 567889999999999999999986 45899999999887665433321 2378999999988753
Q ss_pred hcccCCCccEEEE
Q 024665 207 YRMLVGMVDVIFS 219 (264)
Q Consensus 207 ~~~~~~~fD~V~~ 219 (264)
. ....||.|+-
T Consensus 112 ~--~~~~fd~v~D 122 (218)
T PRK13255 112 A--DLADVDAVYD 122 (218)
T ss_pred c--cCCCeeEEEe
Confidence 2 2357899983
No 144
>PRK06202 hypothetical protein; Provisional
Probab=98.75 E-value=6.8e-08 Score=84.00 Aligned_cols=78 Identities=15% Similarity=0.041 Sum_probs=57.0
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHh---CCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEE
Q 024665 141 IKPGARVLYLGAASGTTVSHVSDIV---GPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVI 217 (264)
Q Consensus 141 l~~g~~VLDlG~G~G~~s~~la~~~---~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V 217 (264)
..+..+|||+|||+|.++..|++.+ ++..+|+++|+|+.|++.+.+.. ...++++++.|+.++.. ..++||+|
T Consensus 58 ~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~-~~~~~~~~~~~~~~l~~---~~~~fD~V 133 (232)
T PRK06202 58 ADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANP-RRPGVTFRQAVSDELVA---EGERFDVV 133 (232)
T ss_pred CCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcc-ccCCCeEEEEecccccc---cCCCccEE
Confidence 3567899999999999999998764 33458999999998865543332 23467777776655431 34689999
Q ss_pred EEcCC
Q 024665 218 FSDVA 222 (264)
Q Consensus 218 ~~d~p 222 (264)
+++..
T Consensus 134 ~~~~~ 138 (232)
T PRK06202 134 TSNHF 138 (232)
T ss_pred EECCe
Confidence 99865
No 145
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=98.75 E-value=1.1e-07 Score=89.07 Aligned_cols=74 Identities=24% Similarity=0.212 Sum_probs=58.5
Q ss_pred cCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEE
Q 024665 139 IWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIF 218 (264)
Q Consensus 139 ~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~ 218 (264)
+.++|+++|||+|||+|.++..+++.. ..+|+++|+|+.+++...+... ..++++.+.|+.+. .++||+|+
T Consensus 163 l~l~~g~rVLDIGcG~G~~a~~la~~~--g~~V~giDlS~~~l~~A~~~~~-~l~v~~~~~D~~~l------~~~fD~Iv 233 (383)
T PRK11705 163 LQLKPGMRVLDIGCGWGGLARYAAEHY--GVSVVGVTISAEQQKLAQERCA-GLPVEIRLQDYRDL------NGQFDRIV 233 (383)
T ss_pred hCCCCCCEEEEeCCCccHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhc-cCeEEEEECchhhc------CCCCCEEE
Confidence 358999999999999999999999874 4589999999988765555442 23688888887653 36899998
Q ss_pred EcC
Q 024665 219 SDV 221 (264)
Q Consensus 219 ~d~ 221 (264)
+..
T Consensus 234 s~~ 236 (383)
T PRK11705 234 SVG 236 (383)
T ss_pred EeC
Confidence 753
No 146
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.75 E-value=1.9e-07 Score=79.82 Aligned_cols=95 Identities=16% Similarity=0.125 Sum_probs=68.6
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEc
Q 024665 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSD 220 (264)
Q Consensus 141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d 220 (264)
..++.+|||+|||+|.++..++.......+++++|+++.+++...+......++++++.|+.+.+ ...++||+|++.
T Consensus 37 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~~D~i~~~ 113 (223)
T TIGR01934 37 VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALP---FEDNSFDAVTIA 113 (223)
T ss_pred cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCC---CCCCcEEEEEEe
Confidence 55789999999999999999998864337899999998776554443332347999999998754 234689999875
Q ss_pred C-----CCchHHHHHHHHHhCCC
Q 024665 221 V-----AQPDQVCFLCLILFQPI 238 (264)
Q Consensus 221 ~-----p~~~~~~~~~~~~l~~~ 238 (264)
. +.+..........++|+
T Consensus 114 ~~~~~~~~~~~~l~~~~~~L~~g 136 (223)
T TIGR01934 114 FGLRNVTDIQKALREMYRVLKPG 136 (223)
T ss_pred eeeCCcccHHHHHHHHHHHcCCC
Confidence 3 34444444555555555
No 147
>PRK00811 spermidine synthase; Provisional
Probab=98.74 E-value=3.4e-07 Score=82.35 Aligned_cols=80 Identities=23% Similarity=0.199 Sum_probs=60.9
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhh-------cCCCeEEEEcCCCCchhhcccCCCc
Q 024665 142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAK-------KRTNVIPIIEDARHPAKYRMLVGMV 214 (264)
Q Consensus 142 ~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~-------~~~nV~~i~~D~~~~~~~~~~~~~f 214 (264)
+...+||++|||.|.++..+++. .+..+|++||+++.+++.+.+... ..++++++++|+.+.... ..++|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~-~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~--~~~~y 151 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKH-PSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAE--TENSF 151 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcC-CCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhh--CCCcc
Confidence 34578999999999999999875 234589999999988655544332 235899999999875532 34689
Q ss_pred cEEEEcCCCc
Q 024665 215 DVIFSDVAQP 224 (264)
Q Consensus 215 D~V~~d~p~~ 224 (264)
|+|++|.+.|
T Consensus 152 DvIi~D~~dp 161 (283)
T PRK00811 152 DVIIVDSTDP 161 (283)
T ss_pred cEEEECCCCC
Confidence 9999998754
No 148
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.74 E-value=2.8e-09 Score=89.22 Aligned_cols=85 Identities=33% Similarity=0.359 Sum_probs=56.7
Q ss_pred HHHHHhcccccC-CCCC--CEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCch
Q 024665 129 AAAVLGGVDNIW-IKPG--ARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPA 205 (264)
Q Consensus 129 ~~~il~~l~~~~-l~~g--~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~ 205 (264)
+.++...++++. ++++ .+||||||+||.|+..++++..+.++|+|||+.+. ....++..+++|.++..
T Consensus 6 ~~KL~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~---------~~~~~~~~i~~d~~~~~ 76 (181)
T PF01728_consen 6 AFKLYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM---------DPLQNVSFIQGDITNPE 76 (181)
T ss_dssp HHHHHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST---------GS-TTEEBTTGGGEEEE
T ss_pred HHHHHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEecccc---------ccccceeeeecccchhh
Confidence 334444444555 5554 89999999999999999999766789999999963 11247888888886643
Q ss_pred hh---cc-c---CCCccEEEEcCC
Q 024665 206 KY---RM-L---VGMVDVIFSDVA 222 (264)
Q Consensus 206 ~~---~~-~---~~~fD~V~~d~p 222 (264)
.. .. + ..+||+|++|+.
T Consensus 77 ~~~~i~~~~~~~~~~~dlv~~D~~ 100 (181)
T PF01728_consen 77 NIKDIRKLLPESGEKFDLVLSDMA 100 (181)
T ss_dssp HSHHGGGSHGTTTCSESEEEE---
T ss_pred HHHhhhhhccccccCcceeccccc
Confidence 21 11 1 158999999995
No 149
>PLN03075 nicotianamine synthase; Provisional
Probab=98.74 E-value=1.5e-07 Score=84.79 Aligned_cols=95 Identities=9% Similarity=0.016 Sum_probs=66.1
Q ss_pred CCCCCEEEEEcccCChH-HHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc----CCCeEEEEcCCCCchhhcccCCCcc
Q 024665 141 IKPGARVLYLGAASGTT-VSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK----RTNVIPIIEDARHPAKYRMLVGMVD 215 (264)
Q Consensus 141 l~~g~~VLDlG~G~G~~-s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~----~~nV~~i~~D~~~~~~~~~~~~~fD 215 (264)
..+.++|+|+|||+|.+ ++.++....+.++++++|+++++++.+.+.+.. ..+|+|+++|+.+... ....||
T Consensus 121 ~~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~---~l~~FD 197 (296)
T PLN03075 121 NGVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTE---SLKEYD 197 (296)
T ss_pred cCCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhccc---ccCCcC
Confidence 44778999999998855 444454556889999999999886655555532 3479999999988542 236899
Q ss_pred EEEEcCC------CchHHHHHHHHHhCCC
Q 024665 216 VIFSDVA------QPDQVCFLCLILFQPI 238 (264)
Q Consensus 216 ~V~~d~p------~~~~~~~~~~~~l~~~ 238 (264)
+||+++. .+..........++|+
T Consensus 198 lVF~~ALi~~dk~~k~~vL~~l~~~LkPG 226 (296)
T PLN03075 198 VVFLAALVGMDKEEKVKVIEHLGKHMAPG 226 (296)
T ss_pred EEEEecccccccccHHHHHHHHHHhcCCC
Confidence 9999852 3334444444555555
No 150
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.73 E-value=5.7e-08 Score=82.74 Aligned_cols=110 Identities=19% Similarity=0.170 Sum_probs=70.5
Q ss_pred CCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc--CCCeEEEEcCCCCchhhcccCCCccEEEEcC
Q 024665 144 GARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK--RTNVIPIIEDARHPAKYRMLVGMVDVIFSDV 221 (264)
Q Consensus 144 g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~--~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~ 221 (264)
...+||+|||.|.+++.+|... |...++|||++...+..+.+.+.. ..|+.+++.|+......-...+++|.|+++.
T Consensus 18 ~~l~lEIG~G~G~~l~~~A~~~-Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~F 96 (195)
T PF02390_consen 18 NPLILEIGCGKGEFLIELAKRN-PDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINF 96 (195)
T ss_dssp CEEEEEET-TTSHHHHHHHHHS-TTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES
T ss_pred CCeEEEecCCCCHHHHHHHHHC-CCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeC
Confidence 3389999999999999999985 788999999996655555554433 3499999999998654323347999999999
Q ss_pred CCchHHHHHHHHHhCCCcHHHHHHHHHHhh-cchhh
Q 024665 222 AQPDQVCFLCLILFQPIVINNLQSVNNETK-GGIFE 256 (264)
Q Consensus 222 p~~~~~~~~~~~~l~~~~~~~l~~~~~~Lk-~g~f~ 256 (264)
|.||....... ........+..+.+.|+ +|.+.
T Consensus 97 PDPWpK~rH~k--rRl~~~~fl~~~~~~L~~gG~l~ 130 (195)
T PF02390_consen 97 PDPWPKKRHHK--RRLVNPEFLELLARVLKPGGELY 130 (195)
T ss_dssp -----SGGGGG--GSTTSHHHHHHHHHHEEEEEEEE
T ss_pred CCCCcccchhh--hhcCCchHHHHHHHHcCCCCEEE
Confidence 98875432211 11224445555566666 55443
No 151
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.72 E-value=2.3e-08 Score=85.76 Aligned_cols=81 Identities=20% Similarity=0.231 Sum_probs=61.4
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHH---HHHHHHhhcCCCeEEEEcCCCCchhh-c--ccCCCcc
Q 024665 142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSG---RDLVNMAKKRTNVIPIIEDARHPAKY-R--MLVGMVD 215 (264)
Q Consensus 142 ~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~---~~l~~~a~~~~nV~~i~~D~~~~~~~-~--~~~~~fD 215 (264)
..-.+||++||++|+.++.||+.+.+.++|+++|++++.+ +++++.+....+|+++++|+.+..+. . ...++||
T Consensus 44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD 123 (205)
T PF01596_consen 44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFD 123 (205)
T ss_dssp HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEE
T ss_pred cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCcee
Confidence 3446999999999999999999988889999999997664 34444444445899999999875432 0 1134799
Q ss_pred EEEEcCC
Q 024665 216 VIFSDVA 222 (264)
Q Consensus 216 ~V~~d~p 222 (264)
+||.|..
T Consensus 124 ~VFiDa~ 130 (205)
T PF01596_consen 124 FVFIDAD 130 (205)
T ss_dssp EEEEEST
T ss_pred EEEEccc
Confidence 9999987
No 152
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=98.71 E-value=9e-08 Score=87.26 Aligned_cols=85 Identities=16% Similarity=0.030 Sum_probs=60.0
Q ss_pred HHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC-------CCeEEEEc
Q 024665 127 KLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-------TNVIPIIE 199 (264)
Q Consensus 127 ~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~-------~nV~~i~~ 199 (264)
.+...++..+......++.+|||+|||+|.+++.+++. ..+|+++|+|+.|++...+.+... .++.+++.
T Consensus 128 ~~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~---g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~ 204 (315)
T PLN02585 128 QTVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALE---GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEAN 204 (315)
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEc
Confidence 33444444443211235789999999999999999976 358999999999976665554432 36788888
Q ss_pred CCCCchhhcccCCCccEEEEc
Q 024665 200 DARHPAKYRMLVGMVDVIFSD 220 (264)
Q Consensus 200 D~~~~~~~~~~~~~fD~V~~d 220 (264)
|+.++ .++||+|++.
T Consensus 205 Dl~~l------~~~fD~Vv~~ 219 (315)
T PLN02585 205 DLESL------SGKYDTVTCL 219 (315)
T ss_pred chhhc------CCCcCEEEEc
Confidence 87543 3689999864
No 153
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.70 E-value=2.9e-08 Score=85.56 Aligned_cols=77 Identities=25% Similarity=0.173 Sum_probs=62.0
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCC--------CeEEEEcCCCCchhhcccCC
Q 024665 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRT--------NVIPIIEDARHPAKYRMLVG 212 (264)
Q Consensus 141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~--------nV~~i~~D~~~~~~~~~~~~ 212 (264)
++.|.+|||.|.|-|++++..++. .+-+|+.||.++.. ++.|+.++ +|++|.+|+.+..+. +.++
T Consensus 132 ~~~G~rVLDtC~GLGYtAi~a~~r--GA~~VitvEkdp~V----LeLa~lNPwSr~l~~~~i~iilGD~~e~V~~-~~D~ 204 (287)
T COG2521 132 VKRGERVLDTCTGLGYTAIEALER--GAIHVITVEKDPNV----LELAKLNPWSRELFEIAIKIILGDAYEVVKD-FDDE 204 (287)
T ss_pred cccCCEeeeeccCccHHHHHHHHc--CCcEEEEEeeCCCe----EEeeccCCCCccccccccEEecccHHHHHhc-CCcc
Confidence 677999999999999999999987 45599999999855 44444443 689999999886542 3456
Q ss_pred CccEEEEcCCCc
Q 024665 213 MVDVIFSDVAQP 224 (264)
Q Consensus 213 ~fD~V~~d~p~~ 224 (264)
+||+|+.|||.-
T Consensus 205 sfDaIiHDPPRf 216 (287)
T COG2521 205 SFDAIIHDPPRF 216 (287)
T ss_pred ccceEeeCCCcc
Confidence 899999999943
No 154
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=98.70 E-value=1.9e-07 Score=80.45 Aligned_cols=71 Identities=14% Similarity=0.177 Sum_probs=54.4
Q ss_pred CEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhh---cCCCeEEEEcCCCCchhhcccCCCccEEEEc
Q 024665 145 ARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAK---KRTNVIPIIEDARHPAKYRMLVGMVDVIFSD 220 (264)
Q Consensus 145 ~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~---~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d 220 (264)
++|||+|||+|.++..+++.. +..+|+++|+|+.+++...+... ...++++++.|+.+.+ ..++||+|++.
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~-~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~----~~~~fD~I~~~ 74 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERH-PHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDP----FPDTYDLVFGF 74 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCC----CCCCCCEeehH
Confidence 379999999999999999886 45789999999877655444433 2347999999986543 23589999963
No 155
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=98.69 E-value=1.9e-07 Score=85.07 Aligned_cols=93 Identities=13% Similarity=0.006 Sum_probs=65.5
Q ss_pred CCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhh---cCCCeEEEEcCCCCchhhcccCCCccE
Q 024665 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAK---KRTNVIPIIEDARHPAKYRMLVGMVDV 216 (264)
Q Consensus 140 ~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~---~~~nV~~i~~D~~~~~~~~~~~~~fD~ 216 (264)
.+.++.+|||+|||+|.++..++.. + ...|++||.|+.|+.+.....+ ...++.++..|+.+.+. ...||+
T Consensus 118 ~~~~g~~VLDvGCG~G~~~~~~~~~-g-~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~----~~~FD~ 191 (314)
T TIGR00452 118 SPLKGRTILDVGCGSGYHMWRMLGH-G-AKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHE----LYAFDT 191 (314)
T ss_pred CCCCCCEEEEeccCCcHHHHHHHHc-C-CCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCC----CCCcCE
Confidence 3677899999999999999999876 2 3479999999987654322221 23478888888877642 258999
Q ss_pred EEEcCC-----CchHHHHHHHHHhCCC
Q 024665 217 IFSDVA-----QPDQVCFLCLILFQPI 238 (264)
Q Consensus 217 V~~d~p-----~~~~~~~~~~~~l~~~ 238 (264)
|++... .|........+.++|+
T Consensus 192 V~s~gvL~H~~dp~~~L~el~r~LkpG 218 (314)
T TIGR00452 192 VFSMGVLYHRKSPLEHLKQLKHQLVIK 218 (314)
T ss_pred EEEcchhhccCCHHHHHHHHHHhcCCC
Confidence 998643 4445555555556655
No 156
>PLN02672 methionine S-methyltransferase
Probab=98.68 E-value=6.1e-08 Score=100.15 Aligned_cols=76 Identities=14% Similarity=0.011 Sum_probs=59.2
Q ss_pred CCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC------------------CCeEEEEcCCCCch
Q 024665 144 GARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR------------------TNVIPIIEDARHPA 205 (264)
Q Consensus 144 g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~------------------~nV~~i~~D~~~~~ 205 (264)
+.+|||+|||+|.+++.++... +..+|+|+|+|+.+++.+.+++..+ .+|++++.|+.+..
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~-~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~ 197 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKW-LPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYC 197 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhc
Confidence 4689999999999999999886 4569999999998865554444321 36999999997754
Q ss_pred hhcccCCCccEEEEcCC
Q 024665 206 KYRMLVGMVDVIFSDVA 222 (264)
Q Consensus 206 ~~~~~~~~fD~V~~d~p 222 (264)
. ....+||+|++|||
T Consensus 198 ~--~~~~~fDlIVSNPP 212 (1082)
T PLN02672 198 R--DNNIELDRIVGCIP 212 (1082)
T ss_pred c--ccCCceEEEEECCC
Confidence 2 11136999999999
No 157
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.68 E-value=2.7e-07 Score=79.63 Aligned_cols=84 Identities=19% Similarity=0.149 Sum_probs=59.6
Q ss_pred HHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC---CCeEEEEcCCCCchh
Q 024665 130 AAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---TNVIPIIEDARHPAK 206 (264)
Q Consensus 130 ~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~---~nV~~i~~D~~~~~~ 206 (264)
..++..+......++.+|||+|||+|.++..+++. ...|+++|+|+.+++.+.+..... .++.+++.|+..
T Consensus 50 ~~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~---~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~--- 123 (230)
T PRK07580 50 DTVLSWLPADGDLTGLRILDAGCGVGSLSIPLARR---GAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLES--- 123 (230)
T ss_pred HHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchh---
Confidence 33444444323567889999999999999999876 247999999998866555543322 378999999432
Q ss_pred hcccCCCccEEEEcCC
Q 024665 207 YRMLVGMVDVIFSDVA 222 (264)
Q Consensus 207 ~~~~~~~fD~V~~d~p 222 (264)
..+.||+|++...
T Consensus 124 ---~~~~fD~v~~~~~ 136 (230)
T PRK07580 124 ---LLGRFDTVVCLDV 136 (230)
T ss_pred ---ccCCcCEEEEcch
Confidence 2368999987533
No 158
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.67 E-value=2.5e-07 Score=79.92 Aligned_cols=97 Identities=19% Similarity=0.206 Sum_probs=73.5
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHH---HHHHhhcCCCeEEEE-cCCCCchhhcccCCCccE
Q 024665 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRD---LVNMAKKRTNVIPII-EDARHPAKYRMLVGMVDV 216 (264)
Q Consensus 141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~---l~~~a~~~~nV~~i~-~D~~~~~~~~~~~~~fD~ 216 (264)
+.+..+|||+|++.|+.++.||..+..++++|+||++++.++. +.+.+.....|+.+. +|+.+.... ...++||+
T Consensus 57 ~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~-~~~~~fDl 135 (219)
T COG4122 57 LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSR-LLDGSFDL 135 (219)
T ss_pred hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHh-ccCCCccE
Confidence 5677899999999999999999999778999999999766444 334444444688888 598876542 34579999
Q ss_pred EEEcCC--CchHHHHHHHHHhCCC
Q 024665 217 IFSDVA--QPDQVCFLCLILFQPI 238 (264)
Q Consensus 217 V~~d~p--~~~~~~~~~~~~l~~~ 238 (264)
||.|.. +-.+.....++.++|+
T Consensus 136 iFIDadK~~yp~~le~~~~lLr~G 159 (219)
T COG4122 136 VFIDADKADYPEYLERALPLLRPG 159 (219)
T ss_pred EEEeCChhhCHHHHHHHHHHhCCC
Confidence 999987 3335555666667766
No 159
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=98.65 E-value=1.8e-07 Score=83.15 Aligned_cols=92 Identities=20% Similarity=0.229 Sum_probs=74.2
Q ss_pred hHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCch
Q 024665 126 SKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPA 205 (264)
Q Consensus 126 s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~ 205 (264)
+.++..|+..++ +.+++.|||+|+|+|.+|..|++.. .+|+++|+++++.+.+.+......|++++++|+.+..
T Consensus 16 ~~~~~~Iv~~~~---~~~~~~VlEiGpG~G~lT~~L~~~~---~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~ 89 (262)
T PF00398_consen 16 PNIADKIVDALD---LSEGDTVLEIGPGPGALTRELLKRG---KRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWD 89 (262)
T ss_dssp HHHHHHHHHHHT---CGTTSEEEEESSTTSCCHHHHHHHS---SEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSC
T ss_pred HHHHHHHHHhcC---CCCCCEEEEeCCCCccchhhHhccc---CcceeecCcHhHHHHHHHHhhhcccceeeecchhccc
Confidence 456777776655 7799999999999999999999985 5999999999888777765555679999999999877
Q ss_pred hhcccCCCccEEEEcCCC
Q 024665 206 KYRMLVGMVDVIFSDVAQ 223 (264)
Q Consensus 206 ~~~~~~~~fD~V~~d~p~ 223 (264)
.+.........|++|.|.
T Consensus 90 ~~~~~~~~~~~vv~NlPy 107 (262)
T PF00398_consen 90 LYDLLKNQPLLVVGNLPY 107 (262)
T ss_dssp GGGHCSSSEEEEEEEETG
T ss_pred cHHhhcCCceEEEEEecc
Confidence 653334577899999994
No 160
>PLN02366 spermidine synthase
Probab=98.65 E-value=4.3e-07 Score=82.60 Aligned_cols=81 Identities=17% Similarity=0.141 Sum_probs=60.2
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhh------cCCCeEEEEcCCCCchhhcccCCCcc
Q 024665 142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAK------KRTNVIPIIEDARHPAKYRMLVGMVD 215 (264)
Q Consensus 142 ~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~------~~~nV~~i~~D~~~~~~~~~~~~~fD 215 (264)
.+..+||++|||.|.++..+++. .+..+|+.||+++.+++...+... ..++++++++|+.+.... ...++||
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~-~~~~~yD 167 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKN-APEGTYD 167 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhh-ccCCCCC
Confidence 45679999999999999999876 334689999999877654444321 234899999999775431 1135899
Q ss_pred EEEEcCCCc
Q 024665 216 VIFSDVAQP 224 (264)
Q Consensus 216 ~V~~d~p~~ 224 (264)
+|++|.+.|
T Consensus 168 vIi~D~~dp 176 (308)
T PLN02366 168 AIIVDSSDP 176 (308)
T ss_pred EEEEcCCCC
Confidence 999998754
No 161
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.63 E-value=4.7e-07 Score=78.89 Aligned_cols=57 Identities=16% Similarity=0.151 Sum_probs=42.7
Q ss_pred chHHHHHHHhcccccCC-CCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHH
Q 024665 125 RSKLAAAVLGGVDNIWI-KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRD 183 (264)
Q Consensus 125 ~s~l~~~il~~l~~~~l-~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~ 183 (264)
.|+-+..+...++.+.+ .++.+|||+|||||.+|..+++. ...+|||||+++.++..
T Consensus 56 vsr~~~kL~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~--ga~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 56 VSRGGEKLKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQK--GAKEVYGVDVGYNQLAE 113 (228)
T ss_pred hhhhHHHHHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHc--CCCEEEEEeCCHHHHHH
Confidence 44444555555554444 47889999999999999999987 46689999999866433
No 162
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.62 E-value=2.9e-07 Score=81.06 Aligned_cols=85 Identities=18% Similarity=0.187 Sum_probs=68.5
Q ss_pred HHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCC---CeEEEEcCCCC
Q 024665 127 KLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRT---NVIPIIEDARH 203 (264)
Q Consensus 127 ~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~---nV~~i~~D~~~ 203 (264)
-.+..|+... .++|.+.|||+|.|||++|..|.+. ..+|+|+|++++|+.++.+.-+-.+ ..+++++|+..
T Consensus 45 ~v~~~I~~ka---~~k~tD~VLEvGPGTGnLT~~lLe~---~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK 118 (315)
T KOG0820|consen 45 LVIDQIVEKA---DLKPTDVVLEVGPGTGNLTVKLLEA---GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLK 118 (315)
T ss_pred HHHHHHHhcc---CCCCCCEEEEeCCCCCHHHHHHHHh---cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEeccccc
Confidence 4555555443 4999999999999999999999998 3489999999999877776654333 68999999987
Q ss_pred chhhcccCCCccEEEEcCC
Q 024665 204 PAKYRMLVGMVDVIFSDVA 222 (264)
Q Consensus 204 ~~~~~~~~~~fD~V~~d~p 222 (264)
.+ ...||.+++|.|
T Consensus 119 ~d-----~P~fd~cVsNlP 132 (315)
T KOG0820|consen 119 TD-----LPRFDGCVSNLP 132 (315)
T ss_pred CC-----CcccceeeccCC
Confidence 54 257999999988
No 163
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.61 E-value=2.9e-07 Score=77.94 Aligned_cols=74 Identities=22% Similarity=0.227 Sum_probs=54.8
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEc
Q 024665 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSD 220 (264)
Q Consensus 141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d 220 (264)
++++++|||+|||+|.++..+++.. ...++++|+++.+++. +.. .++++++.|+.+.... ...++||+|+++
T Consensus 11 i~~~~~iLDiGcG~G~~~~~l~~~~--~~~~~giD~s~~~i~~----a~~-~~~~~~~~d~~~~l~~-~~~~sfD~Vi~~ 82 (194)
T TIGR02081 11 IPPGSRVLDLGCGDGELLALLRDEK--QVRGYGIEIDQDGVLA----CVA-RGVNVIQGDLDEGLEA-FPDKSFDYVILS 82 (194)
T ss_pred cCCCCEEEEeCCCCCHHHHHHHhcc--CCcEEEEeCCHHHHHH----HHH-cCCeEEEEEhhhcccc-cCCCCcCEEEEh
Confidence 4578899999999999999998763 3478999999876433 322 3688999998762210 234689999997
Q ss_pred CC
Q 024665 221 VA 222 (264)
Q Consensus 221 ~p 222 (264)
.+
T Consensus 83 ~~ 84 (194)
T TIGR02081 83 QT 84 (194)
T ss_pred hH
Confidence 65
No 164
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.61 E-value=2.8e-07 Score=85.87 Aligned_cols=91 Identities=16% Similarity=0.079 Sum_probs=66.5
Q ss_pred CEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC--CCeEEEEcCCCCchhhcccCCCccEEEEcCC
Q 024665 145 ARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIFSDVA 222 (264)
Q Consensus 145 ~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~--~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p 222 (264)
-+|||+.||+|..++.++.......+|+++|+++.+++.+.++...+ .++++++.|+...... ...+||+|++||+
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~--~~~~fDvIdlDPf 123 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRY--RNRKFHVIDIDPF 123 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHH--hCCCCCEEEeCCC
Confidence 48999999999999999987544568999999988865554444333 2799999999876532 2357999999997
Q ss_pred -CchHHHHHHHHHhCC
Q 024665 223 -QPDQVCFLCLILFQP 237 (264)
Q Consensus 223 -~~~~~~~~~~~~l~~ 237 (264)
.|......++..+..
T Consensus 124 Gs~~~fld~al~~~~~ 139 (374)
T TIGR00308 124 GTPAPFVDSAIQASAE 139 (374)
T ss_pred CCcHHHHHHHHHhccc
Confidence 334444445544443
No 165
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.60 E-value=6.8e-08 Score=77.59 Aligned_cols=95 Identities=18% Similarity=0.156 Sum_probs=71.6
Q ss_pred CcchHHHHHHHhcccccC-CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC-CCeEEEEcC
Q 024665 123 PFRSKLAAAVLGGVDNIW-IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIED 200 (264)
Q Consensus 123 p~~s~l~~~il~~l~~~~-l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~-~nV~~i~~D 200 (264)
|.++.+++.++..+.+.+ --+|.+++|||||.|.+++..+.. ..-.|+++|+++++++-...++... .++.+++.|
T Consensus 27 ~T~p~iAasM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~--~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcd 104 (185)
T KOG3420|consen 27 PTRPHIAASMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMP--KNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCD 104 (185)
T ss_pred CCcHHHHHHHHHHHHhhhccccCcchhhhcCchhhhHHHhhcC--CCceEEeeecCHHHHHHHhhchHHhhhhhheeeee
Confidence 446778887777776553 368999999999999999766644 4557999999998865443333322 288999999
Q ss_pred CCCchhhcccCCCccEEEEcCC
Q 024665 201 ARHPAKYRMLVGMVDVIFSDVA 222 (264)
Q Consensus 201 ~~~~~~~~~~~~~fD~V~~d~p 222 (264)
+.++.. ....||.++.|+|
T Consensus 105 ildle~---~~g~fDtaviNpp 123 (185)
T KOG3420|consen 105 ILDLEL---KGGIFDTAVINPP 123 (185)
T ss_pred ccchhc---cCCeEeeEEecCC
Confidence 998763 2368999999999
No 166
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.59 E-value=3.5e-07 Score=66.88 Aligned_cols=75 Identities=28% Similarity=0.239 Sum_probs=56.4
Q ss_pred EEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHh--hcCCCeEEEEcCCCCchhhcccCCCccEEEEcCCC
Q 024665 146 RVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMA--KKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQ 223 (264)
Q Consensus 146 ~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a--~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p~ 223 (264)
+|||+|||+|.++..++. .+..+++++|+++.+...+.+.. ....++++++.|+.+... ....++|+|+++.+.
T Consensus 1 ~ildig~G~G~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~i~~~~~~ 76 (107)
T cd02440 1 RVLDLGCGTGALALALAS--GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPP--EADESFDVIISDPPL 76 (107)
T ss_pred CeEEEcCCccHHHHHHhc--CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhcc--ccCCceEEEEEccce
Confidence 489999999999999987 35679999999987754444222 123489999999988653 134689999999874
Q ss_pred c
Q 024665 224 P 224 (264)
Q Consensus 224 ~ 224 (264)
.
T Consensus 77 ~ 77 (107)
T cd02440 77 H 77 (107)
T ss_pred e
Confidence 3
No 167
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=98.59 E-value=9.1e-08 Score=90.62 Aligned_cols=106 Identities=17% Similarity=0.110 Sum_probs=78.2
Q ss_pred HHHHHHHhcccc-cCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCC--CeEEEEcCCCC
Q 024665 127 KLAAAVLGGVDN-IWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRT--NVIPIIEDARH 203 (264)
Q Consensus 127 ~l~~~il~~l~~-~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~--nV~~i~~D~~~ 203 (264)
..++.+...+.+ ..+.++..+||+|||||++++.+|+.+. +|++||+++.+++++..+|+.+. |.+||++-+++
T Consensus 366 ~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~~~---~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~ 442 (534)
T KOG2187|consen 366 SAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARGVK---RVIGVEISPDAVEDAEKNAQINGISNATFIVGQAED 442 (534)
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhcccc---ceeeeecChhhcchhhhcchhcCccceeeeecchhh
Confidence 344444444433 2588899999999999999999998765 89999999999888777776654 99999998877
Q ss_pred chhhcccCC---Ccc-EEEEcCCC--chHHHHHHHHHhC
Q 024665 204 PAKYRMLVG---MVD-VIFSDVAQ--PDQVCFLCLILFQ 236 (264)
Q Consensus 204 ~~~~~~~~~---~fD-~V~~d~p~--~~~~~~~~~~~l~ 236 (264)
+..- .+.. .=+ ++++|+|. -++..+..+.++.
T Consensus 443 ~~~s-l~~~~~~~~~~v~iiDPpR~Glh~~~ik~l~~~~ 480 (534)
T KOG2187|consen 443 LFPS-LLTPCCDSETLVAIIDPPRKGLHMKVIKALRAYK 480 (534)
T ss_pred ccch-hcccCCCCCceEEEECCCcccccHHHHHHHHhcc
Confidence 5431 1111 335 78899994 5667777777776
No 168
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.59 E-value=1.9e-07 Score=83.21 Aligned_cols=77 Identities=12% Similarity=0.123 Sum_probs=55.2
Q ss_pred CCCCCEEEEEcccCCh----HHHHHHHHhCC----CCEEEEEeCChHHHHHHHHHh------------------------
Q 024665 141 IKPGARVLYLGAASGT----TVSHVSDIVGP----NGVVYAVEFSHRSGRDLVNMA------------------------ 188 (264)
Q Consensus 141 l~~g~~VLDlG~G~G~----~s~~la~~~~~----~g~V~avD~s~~~~~~l~~~a------------------------ 188 (264)
..+..+|||+|||+|- +++.+++.... ..+|+|+|+|+.|++.+.+..
T Consensus 97 ~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~ 176 (264)
T smart00138 97 HGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDK 176 (264)
T ss_pred CCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCe
Confidence 3455799999999996 56666665432 468999999998865544321
Q ss_pred -----hcCCCeEEEEcCCCCchhhcccCCCccEEEEc
Q 024665 189 -----KKRTNVIPIIEDARHPAKYRMLVGMVDVIFSD 220 (264)
Q Consensus 189 -----~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d 220 (264)
..+.+|++.+.|+.+.+. ..++||+|+|.
T Consensus 177 ~~v~~~ir~~V~F~~~dl~~~~~---~~~~fD~I~cr 210 (264)
T smart00138 177 YRVKPELKERVRFAKHNLLAESP---PLGDFDLIFCR 210 (264)
T ss_pred EEEChHHhCcCEEeeccCCCCCC---ccCCCCEEEec
Confidence 012379999999988652 24689999984
No 169
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.59 E-value=2.4e-07 Score=83.24 Aligned_cols=79 Identities=24% Similarity=0.090 Sum_probs=54.3
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC----CCeEEEEcCCCCchhhcccCCCccEE
Q 024665 142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR----TNVIPIIEDARHPAKYRMLVGMVDVI 217 (264)
Q Consensus 142 ~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~----~nV~~i~~D~~~~~~~~~~~~~fD~V 217 (264)
..+.+|||+.|=||.++++++. +.+.+|+.||.|..+++...+++..+ .++++++.|+.+....-.-..+||+|
T Consensus 122 ~~gkrvLnlFsYTGgfsv~Aa~--gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~I 199 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVAAAA--GGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLI 199 (286)
T ss_dssp CTTCEEEEET-TTTHHHHHHHH--TTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEE
T ss_pred cCCCceEEecCCCCHHHHHHHH--CCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEE
Confidence 3578999999999999999875 35668999999987755444443333 37999999998754321123589999
Q ss_pred EEcCC
Q 024665 218 FSDVA 222 (264)
Q Consensus 218 ~~d~p 222 (264)
++|||
T Consensus 200 IlDPP 204 (286)
T PF10672_consen 200 ILDPP 204 (286)
T ss_dssp EE--S
T ss_pred EECCC
Confidence 99999
No 170
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.58 E-value=6.7e-08 Score=80.42 Aligned_cols=69 Identities=23% Similarity=0.338 Sum_probs=53.9
Q ss_pred EEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC--CC-eEEEEcCCCCchhhcccCCCccEEE
Q 024665 146 RVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TN-VIPIIEDARHPAKYRMLVGMVDVIF 218 (264)
Q Consensus 146 ~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~--~n-V~~i~~D~~~~~~~~~~~~~fD~V~ 218 (264)
+|||||||.|.+...|++.- -.+.+++||.|+.+++-+.+.|... +| |++.+.|++++. ...++||+|+
T Consensus 70 ~VlDLGtGNG~~L~~L~~eg-f~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~---~~~~qfdlvl 141 (227)
T KOG1271|consen 70 RVLDLGTGNGHLLFQLAKEG-FQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPD---FLSGQFDLVL 141 (227)
T ss_pred ceeeccCCchHHHHHHHHhc-CCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCc---ccccceeEEe
Confidence 99999999999999999873 3557999999988865444444332 35 999999999974 3567888886
No 171
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.56 E-value=2.2e-07 Score=80.87 Aligned_cols=109 Identities=17% Similarity=0.181 Sum_probs=79.1
Q ss_pred CEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhh-cCC-CeEEEEcCCCCchhhcccCC-CccEEEEcC
Q 024665 145 ARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAK-KRT-NVIPIIEDARHPAKYRMLVG-MVDVIFSDV 221 (264)
Q Consensus 145 ~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~-~~~-nV~~i~~D~~~~~~~~~~~~-~fD~V~~d~ 221 (264)
..+||||||.|.+.+.+|.. .|+..++|||+....+..+++.+. ... ||.+++.||..+..+ +... ++|.|+++-
T Consensus 50 pi~lEIGfG~G~~l~~~A~~-nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~-~~~~~sl~~I~i~F 127 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKK-NPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDY-LIPDGSLDKIYINF 127 (227)
T ss_pred cEEEEECCCCCHHHHHHHHH-CCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHh-cCCCCCeeEEEEEC
Confidence 48999999999999999998 577889999999655445555443 344 999999999998765 3444 999999999
Q ss_pred CCchHHHHHHHHHhCCCcHHHHHHHHHHhh-cchhhh
Q 024665 222 AQPDQVCFLCLILFQPIVINNLQSVNNETK-GGIFEF 257 (264)
Q Consensus 222 p~~~~~~~~~~~~l~~~~~~~l~~~~~~Lk-~g~f~~ 257 (264)
|.||....+.-+. ......++...+.|+ +|.+.+
T Consensus 128 PDPWpKkRH~KRR--l~~~~fl~~~a~~Lk~gG~l~~ 162 (227)
T COG0220 128 PDPWPKKRHHKRR--LTQPEFLKLYARKLKPGGVLHF 162 (227)
T ss_pred CCCCCCccccccc--cCCHHHHHHHHHHccCCCEEEE
Confidence 9888653332211 224445666666676 555543
No 172
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=98.56 E-value=2.5e-07 Score=78.19 Aligned_cols=73 Identities=19% Similarity=0.109 Sum_probs=53.6
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEcC
Q 024665 142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDV 221 (264)
Q Consensus 142 ~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~ 221 (264)
..-.++||+||+.|.+|..||.+.. .++++|+|+.+++...+.....+||++++.|+.+.. +.+.||+|++.-
T Consensus 42 ~ry~~alEvGCs~G~lT~~LA~rCd---~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~----P~~~FDLIV~SE 114 (201)
T PF05401_consen 42 RRYRRALEVGCSIGVLTERLAPRCD---RLLAVDISPRALARARERLAGLPHVEWIQADVPEFW----PEGRFDLIVLSE 114 (201)
T ss_dssp SSEEEEEEE--TTSHHHHHHGGGEE---EEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT-------SS-EEEEEEES
T ss_pred cccceeEecCCCccHHHHHHHHhhC---ceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCC----CCCCeeEEEEeh
Confidence 3446899999999999999999865 899999999887776666655679999999997754 357999999753
No 173
>PRK03612 spermidine synthase; Provisional
Probab=98.55 E-value=5.2e-07 Score=87.68 Aligned_cols=81 Identities=22% Similarity=0.212 Sum_probs=61.0
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHH------h---hcCCCeEEEEcCCCCchhhcccCC
Q 024665 142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNM------A---KKRTNVIPIIEDARHPAKYRMLVG 212 (264)
Q Consensus 142 ~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~------a---~~~~nV~~i~~D~~~~~~~~~~~~ 212 (264)
++..+|||+|||+|.++..+++. .+..+|++||+++++++...+. + ...++++++++|+++... ...+
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~--~~~~ 372 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLR--KLAE 372 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHH--hCCC
Confidence 45579999999999999999875 3336999999999887554441 1 112589999999987543 2346
Q ss_pred CccEEEEcCCCch
Q 024665 213 MVDVIFSDVAQPD 225 (264)
Q Consensus 213 ~fD~V~~d~p~~~ 225 (264)
+||+|++|.+.|+
T Consensus 373 ~fDvIi~D~~~~~ 385 (521)
T PRK03612 373 KFDVIIVDLPDPS 385 (521)
T ss_pred CCCEEEEeCCCCC
Confidence 8999999988654
No 174
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.54 E-value=2e-07 Score=84.71 Aligned_cols=76 Identities=24% Similarity=0.246 Sum_probs=62.1
Q ss_pred CCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCCh--HHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEE
Q 024665 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSH--RSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVI 217 (264)
Q Consensus 140 ~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~--~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V 217 (264)
++-.+..|||+|||+|.+++..|+. .+.+|||||.|. ..++++++.|....-|+++++.+.+.. .+.+++|+|
T Consensus 57 ~lf~dK~VlDVGcGtGILS~F~akA--GA~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~---LP~eKVDiI 131 (346)
T KOG1499|consen 57 HLFKDKTVLDVGCGTGILSMFAAKA--GARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIE---LPVEKVDII 131 (346)
T ss_pred hhcCCCEEEEcCCCccHHHHHHHHh--CcceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEEe---cCccceeEE
Confidence 4778999999999999999999987 477999999994 446666666666667999999998874 225899999
Q ss_pred EEc
Q 024665 218 FSD 220 (264)
Q Consensus 218 ~~d 220 (264)
++.
T Consensus 132 vSE 134 (346)
T KOG1499|consen 132 VSE 134 (346)
T ss_pred eeh
Confidence 985
No 175
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=98.53 E-value=1.8e-08 Score=75.73 Aligned_cols=73 Identities=14% Similarity=0.119 Sum_probs=40.5
Q ss_pred EEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC--CCeEEEEcCCCCchhhcccCCCccEEEEcCC
Q 024665 148 LYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIFSDVA 222 (264)
Q Consensus 148 LDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~--~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p 222 (264)
||+|||+|.++..+++.. +..+++++|+|+.|+....+..... .++..+..+..+.... ...++||+|++.-.
T Consensus 1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~fD~V~~~~v 75 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDY-DPPESFDLVVASNV 75 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---C-CC----SEEEEE-T
T ss_pred CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhc-ccccccceehhhhh
Confidence 799999999999999986 6779999999987742222222221 2455555555554322 12259999997543
No 176
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.52 E-value=3.8e-07 Score=73.70 Aligned_cols=68 Identities=28% Similarity=0.365 Sum_probs=50.5
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEc
Q 024665 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSD 220 (264)
Q Consensus 141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d 220 (264)
.+++.+|||+|||+|.++..+++. +. +|+++|+++.+++. .++.+...+..+.. ...++||+|++.
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~--~~-~~~g~D~~~~~~~~--------~~~~~~~~~~~~~~---~~~~~fD~i~~~ 85 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKR--GF-EVTGVDISPQMIEK--------RNVVFDNFDAQDPP---FPDGSFDLIICN 85 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHT--TS-EEEEEESSHHHHHH--------TTSEEEEEECHTHH---CHSSSEEEEEEE
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHh--CC-EEEEEECCHHHHhh--------hhhhhhhhhhhhhh---ccccchhhHhhH
Confidence 578899999999999999999776 22 99999999877433 34455555444433 235799999987
Q ss_pred CC
Q 024665 221 VA 222 (264)
Q Consensus 221 ~p 222 (264)
..
T Consensus 86 ~~ 87 (161)
T PF13489_consen 86 DV 87 (161)
T ss_dssp SS
T ss_pred HH
Confidence 55
No 177
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.51 E-value=4.4e-07 Score=82.01 Aligned_cols=76 Identities=29% Similarity=0.236 Sum_probs=62.1
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHH--HHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEE
Q 024665 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRS--GRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIF 218 (264)
Q Consensus 141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~--~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~ 218 (264)
--.+..|||+|||+|+++...|+. .+.+|||||.|+-+ ++.+++-|...++|.+|.+-+++.. +++++|+|+
T Consensus 175 DF~~kiVlDVGaGSGILS~FAaqA--GA~~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdie----LPEk~DviI 248 (517)
T KOG1500|consen 175 DFQDKIVLDVGAGSGILSFFAAQA--GAKKVYAVEASEMAQYARKLVASNNLADRITVIPGKIEDIE----LPEKVDVII 248 (517)
T ss_pred ccCCcEEEEecCCccHHHHHHHHh--CcceEEEEehhHHHHHHHHHHhcCCccceEEEccCcccccc----CchhccEEE
Confidence 346789999999999999999887 57799999999533 5666666655568999999998875 568999999
Q ss_pred EcCC
Q 024665 219 SDVA 222 (264)
Q Consensus 219 ~d~p 222 (264)
+.|.
T Consensus 249 SEPM 252 (517)
T KOG1500|consen 249 SEPM 252 (517)
T ss_pred eccc
Confidence 9876
No 178
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.51 E-value=9.2e-07 Score=80.13 Aligned_cols=74 Identities=9% Similarity=0.016 Sum_probs=54.8
Q ss_pred CCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhh---cCCCeEEEEcCCCCchhhcccCCCccE
Q 024665 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAK---KRTNVIPIIEDARHPAKYRMLVGMVDV 216 (264)
Q Consensus 140 ~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~---~~~nV~~i~~D~~~~~~~~~~~~~fD~ 216 (264)
.+++..+|||+|||+|.+++.+++.. |..+++++|. +.+++...+.+. ...+|+++.+|+.+.. + +.+|+
T Consensus 146 ~~~~~~~vlDiG~G~G~~~~~~~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~----~-~~~D~ 218 (306)
T TIGR02716 146 KLDGVKKMIDVGGGIGDISAAMLKHF-PELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKES----Y-PEADA 218 (306)
T ss_pred CCCCCCEEEEeCCchhHHHHHHHHHC-CCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCC----C-CCCCE
Confidence 47888999999999999999999986 6789999998 455433333322 2347999999987632 1 34798
Q ss_pred EEEc
Q 024665 217 IFSD 220 (264)
Q Consensus 217 V~~d 220 (264)
|++.
T Consensus 219 v~~~ 222 (306)
T TIGR02716 219 VLFC 222 (306)
T ss_pred EEeE
Confidence 8753
No 179
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.50 E-value=1.1e-06 Score=76.05 Aligned_cols=112 Identities=21% Similarity=0.235 Sum_probs=75.9
Q ss_pred CCceeeeeeEEEEecCCCceecceEeCCcchHHHHHHHhcccccCCC-CCCEEEEEcccCChHHHHHHHHhCCCCEEEEE
Q 024665 96 AGEAVYNEKRISVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIK-PGARVLYLGAASGTTVSHVSDIVGPNGVVYAV 174 (264)
Q Consensus 96 ~g~~vy~e~~~~v~~~~~~~~~yr~~~p~~s~l~~~il~~l~~~~l~-~g~~VLDlG~G~G~~s~~la~~~~~~g~V~av 174 (264)
|+..+-.+..+.+.++ -.+|.|+-+..+...++++.+. ++..|||+|+.||.+|..+.+. .+.+||||
T Consensus 40 P~~~V~~~~~i~v~~~---------~~~yVSRG~~KL~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~--gAk~Vyav 108 (245)
T COG1189 40 PSQLVDIDDEIEVKGE---------EQPYVSRGGLKLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQR--GAKHVYAV 108 (245)
T ss_pred cceecCCCceEEEccc---------CcCccccHHHHHHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHc--CCcEEEEE
Confidence 4544444445555533 2456788777888888877664 6889999999999999999998 57799999
Q ss_pred eCChHHHHHHHHHhhcCCCeEEE-EcCCCCchhhcccCCCccEEEEcCC
Q 024665 175 EFSHRSGRDLVNMAKKRTNVIPI-IEDARHPAKYRMLVGMVDVIFSDVA 222 (264)
Q Consensus 175 D~s~~~~~~l~~~a~~~~nV~~i-~~D~~~~~~~~~~~~~fD~V~~d~p 222 (264)
|+... ++.......++|..+ .-+++.+.+. .+.+..|+|++|++
T Consensus 109 DVG~~---Ql~~kLR~d~rV~~~E~tN~r~l~~~-~~~~~~d~~v~DvS 153 (245)
T COG1189 109 DVGYG---QLHWKLRNDPRVIVLERTNVRYLTPE-DFTEKPDLIVIDVS 153 (245)
T ss_pred EccCC---ccCHhHhcCCcEEEEecCChhhCCHH-HcccCCCeEEEEee
Confidence 99842 122222333455443 4455554433 34458999999998
No 180
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.50 E-value=1.2e-06 Score=80.04 Aligned_cols=79 Identities=9% Similarity=0.008 Sum_probs=55.0
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC----CCeEEEE-cCCCCchhh-cccCCCccE
Q 024665 143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR----TNVIPII-EDARHPAKY-RMLVGMVDV 216 (264)
Q Consensus 143 ~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~----~nV~~i~-~D~~~~~~~-~~~~~~fD~ 216 (264)
+..+|||||||+|.+...|+... +..+++|+|+++.+++.+.+.+..+ .+|++++ .|..+.... ....+.||+
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~-~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDl 192 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHE-YGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDA 192 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhC-CCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEE
Confidence 56799999999999988888764 4568999999987765544444433 3677754 344332211 012358999
Q ss_pred EEEcCC
Q 024665 217 IFSDVA 222 (264)
Q Consensus 217 V~~d~p 222 (264)
|+||||
T Consensus 193 ivcNPP 198 (321)
T PRK11727 193 TLCNPP 198 (321)
T ss_pred EEeCCC
Confidence 999999
No 181
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.49 E-value=9.6e-07 Score=80.04 Aligned_cols=65 Identities=15% Similarity=0.179 Sum_probs=51.1
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc-C--CCeEEEEcCCCCch
Q 024665 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK-R--TNVIPIIEDARHPA 205 (264)
Q Consensus 141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~-~--~nV~~i~~D~~~~~ 205 (264)
+.++.+|||+|||+|.++..|++.+....+|+++|+|+.|++.+.+.... . .+|.++++|+.+..
T Consensus 61 ~~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~ 128 (301)
T TIGR03438 61 TGAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPL 128 (301)
T ss_pred hCCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchh
Confidence 45778999999999999999998864346899999999987666555432 2 25788999998753
No 182
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.49 E-value=1e-06 Score=77.75 Aligned_cols=82 Identities=15% Similarity=0.190 Sum_probs=64.2
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHH---HHHHHHHhhcCCCeEEEEcCCCCchhhcc----cCCC
Q 024665 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRS---GRDLVNMAKKRTNVIPIIEDARHPAKYRM----LVGM 213 (264)
Q Consensus 141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~---~~~l~~~a~~~~nV~~i~~D~~~~~~~~~----~~~~ 213 (264)
..+-.+||++|+.+|+.++.+|..+.+.++|+++|.++.. ++++++.+....+|+++++|+.+..+.-. ..++
T Consensus 77 ~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~ 156 (247)
T PLN02589 77 LINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGT 156 (247)
T ss_pred HhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCc
Confidence 3345689999999999999999988888999999999755 44455555555699999999988643211 1258
Q ss_pred ccEEEEcCC
Q 024665 214 VDVIFSDVA 222 (264)
Q Consensus 214 fD~V~~d~p 222 (264)
||+||.|..
T Consensus 157 fD~iFiDad 165 (247)
T PLN02589 157 FDFIFVDAD 165 (247)
T ss_pred ccEEEecCC
Confidence 999999987
No 183
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.47 E-value=7e-07 Score=77.67 Aligned_cols=76 Identities=11% Similarity=0.062 Sum_probs=57.8
Q ss_pred CCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc--------------CCCeEEEEcCCCCch
Q 024665 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK--------------RTNVIPIIEDARHPA 205 (264)
Q Consensus 140 ~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~--------------~~nV~~i~~D~~~~~ 205 (264)
.+.++.+||+.+||.|.-...||+. .-.|+|||+|+.+++...+.+.. ..+|+++++|+.++.
T Consensus 40 ~~~~~~rvLvPgCGkg~D~~~LA~~---G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~ 116 (226)
T PRK13256 40 NINDSSVCLIPMCGCSIDMLFFLSK---GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLP 116 (226)
T ss_pred CCCCCCeEEEeCCCChHHHHHHHhC---CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCC
Confidence 3557789999999999999999987 34799999999887766553311 138999999999875
Q ss_pred hhcccCCCccEEE
Q 024665 206 KYRMLVGMVDVIF 218 (264)
Q Consensus 206 ~~~~~~~~fD~V~ 218 (264)
......+.||+|+
T Consensus 117 ~~~~~~~~fD~Vy 129 (226)
T PRK13256 117 KIANNLPVFDIWY 129 (226)
T ss_pred ccccccCCcCeee
Confidence 3212345899986
No 184
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.46 E-value=2.1e-06 Score=76.65 Aligned_cols=78 Identities=18% Similarity=0.134 Sum_probs=57.7
Q ss_pred CCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhh------cCCCeEEEEcCCCCchhhcccCCCccEE
Q 024665 144 GARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAK------KRTNVIPIIEDARHPAKYRMLVGMVDVI 217 (264)
Q Consensus 144 g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~------~~~nV~~i~~D~~~~~~~~~~~~~fD~V 217 (264)
..+||++|||+|.++..++... +..+|+++|+++.+++.+.+... ..+++++++.|+.+... ...++||+|
T Consensus 73 p~~VL~iG~G~G~~~~~ll~~~-~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~--~~~~~yDvI 149 (270)
T TIGR00417 73 PKHVLVIGGGDGGVLREVLKHK-SVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLA--DTENTFDVI 149 (270)
T ss_pred CCEEEEEcCCchHHHHHHHhCC-CcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHH--hCCCCccEE
Confidence 3499999999999998887663 35689999999887655444321 12478899999876543 234689999
Q ss_pred EEcCCCc
Q 024665 218 FSDVAQP 224 (264)
Q Consensus 218 ~~d~p~~ 224 (264)
++|.+.|
T Consensus 150 i~D~~~~ 156 (270)
T TIGR00417 150 IVDSTDP 156 (270)
T ss_pred EEeCCCC
Confidence 9998743
No 185
>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.45 E-value=3.6e-07 Score=83.82 Aligned_cols=91 Identities=27% Similarity=0.289 Sum_probs=71.0
Q ss_pred chHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc--CCCeEEEEcCCC
Q 024665 125 RSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK--RTNVIPIIEDAR 202 (264)
Q Consensus 125 ~s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~--~~nV~~i~~D~~ 202 (264)
.|.++++++ ...+++.|+|.||.+|..|+|+|.++.+.+++||+|.+++-++.+..+... ..+++.+++|+.
T Consensus 201 asclpA~ll------~p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~~~~~~~~df~ 274 (413)
T KOG2360|consen 201 ASCLPAHLL------DPRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVSIVESVEGDFL 274 (413)
T ss_pred hhcchhhhc------CCCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCCcccccccccc
Confidence 678888887 578899999999999999999999999999999999996554444443332 237888899998
Q ss_pred CchhhcccCCCccEEEEcCC
Q 024665 203 HPAKYRMLVGMVDVIFSDVA 222 (264)
Q Consensus 203 ~~~~~~~~~~~fD~V~~d~p 222 (264)
.. .+...-..+..|++|++
T Consensus 275 ~t-~~~~~~~~v~~iL~Dps 293 (413)
T KOG2360|consen 275 NT-ATPEKFRDVTYILVDPS 293 (413)
T ss_pred CC-CCcccccceeEEEeCCC
Confidence 74 32223357889999998
No 186
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.44 E-value=8.4e-07 Score=81.02 Aligned_cols=120 Identities=20% Similarity=0.106 Sum_probs=77.6
Q ss_pred hHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC--CCeEEEEc-CCC
Q 024665 126 SKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIE-DAR 202 (264)
Q Consensus 126 s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~--~nV~~i~~-D~~ 202 (264)
++++..+.+... +++|+.|||=.||||++.+.+.-. ..+|+++|++.+|++....+.... ....++.. |++
T Consensus 183 P~lAR~mVNLa~---v~~G~~vlDPFcGTGgiLiEagl~---G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~ 256 (347)
T COG1041 183 PRLARAMVNLAR---VKRGELVLDPFCGTGGILIEAGLM---GARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDAT 256 (347)
T ss_pred HHHHHHHHHHhc---cccCCEeecCcCCccHHHHhhhhc---CceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccc
Confidence 566666654444 999999999999999999998865 458999999998875533322221 24545555 998
Q ss_pred CchhhcccCCCccEEEEcCCCchHH--HHHHHHHhCCCcHHHHHHHHHHhh-cchhhh
Q 024665 203 HPAKYRMLVGMVDVIFSDVAQPDQV--CFLCLILFQPIVINNLQSVNNETK-GGIFEF 257 (264)
Q Consensus 203 ~~~~~~~~~~~fD~V~~d~p~~~~~--~~~~~~~l~~~~~~~l~~~~~~Lk-~g~f~~ 257 (264)
+++. ..+.||.|++|||.--.. ....+..| ....++++.+.|+ +|.+.|
T Consensus 257 ~lpl---~~~~vdaIatDPPYGrst~~~~~~l~~L---y~~~le~~~evLk~gG~~vf 308 (347)
T COG1041 257 NLPL---RDNSVDAIATDPPYGRSTKIKGEGLDEL---YEEALESASEVLKPGGRIVF 308 (347)
T ss_pred cCCC---CCCccceEEecCCCCcccccccccHHHH---HHHHHHHHHHHhhcCcEEEE
Confidence 8761 223699999999932111 11111222 4445677777787 444443
No 187
>PRK10742 putative methyltransferase; Provisional
Probab=98.44 E-value=1.2e-06 Score=76.85 Aligned_cols=81 Identities=15% Similarity=0.038 Sum_probs=62.2
Q ss_pred CCCCCC--EEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHH---HHHHHHHhh--------cCCCeEEEEcCCCCchh
Q 024665 140 WIKPGA--RVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRS---GRDLVNMAK--------KRTNVIPIIEDARHPAK 206 (264)
Q Consensus 140 ~l~~g~--~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~---~~~l~~~a~--------~~~nV~~i~~D~~~~~~ 206 (264)
.++++. +|||+.||+|..++.+|.+ .++|++||.++.+ +++.++.+. ...++++++.|+.+...
T Consensus 83 glk~g~~p~VLD~TAGlG~Da~~las~---G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~ 159 (250)
T PRK10742 83 GIKGDYLPDVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALT 159 (250)
T ss_pred CCCCCCCCEEEECCCCccHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHh
Confidence 488888 9999999999999999987 4579999999755 444444431 11379999999988654
Q ss_pred hcccCCCccEEEEcCCCch
Q 024665 207 YRMLVGMVDVIFSDVAQPD 225 (264)
Q Consensus 207 ~~~~~~~fD~V~~d~p~~~ 225 (264)
. ....||+|++||+.|+
T Consensus 160 ~--~~~~fDVVYlDPMfp~ 176 (250)
T PRK10742 160 D--ITPRPQVVYLDPMFPH 176 (250)
T ss_pred h--CCCCCcEEEECCCCCC
Confidence 2 3347999999999554
No 188
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=98.43 E-value=2.3e-06 Score=78.20 Aligned_cols=74 Identities=23% Similarity=0.214 Sum_probs=57.7
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEc
Q 024665 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSD 220 (264)
Q Consensus 141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d 220 (264)
+.++.+||||||+||.||..|++. ..+|||||..+ + .......++|+.++.|.....+ ....+|+|++|
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~r---G~~V~AVD~g~-l----~~~L~~~~~V~h~~~d~fr~~p---~~~~vDwvVcD 277 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRR---GMFVTAVDNGP-M----AQSLMDTGQVEHLRADGFKFRP---PRKNVDWLVCD 277 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHc---CCEEEEEechh-c----CHhhhCCCCEEEEeccCcccCC---CCCCCCEEEEe
Confidence 578999999999999999999987 34999999764 2 2222334689999999877543 14689999999
Q ss_pred CC-Cch
Q 024665 221 VA-QPD 225 (264)
Q Consensus 221 ~p-~~~ 225 (264)
+. .|.
T Consensus 278 mve~P~ 283 (357)
T PRK11760 278 MVEKPA 283 (357)
T ss_pred cccCHH
Confidence 99 344
No 189
>PRK01581 speE spermidine synthase; Validated
Probab=98.43 E-value=7.9e-07 Score=82.09 Aligned_cols=79 Identities=24% Similarity=0.191 Sum_probs=59.0
Q ss_pred CCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHH------hh---cCCCeEEEEcCCCCchhhcccCCCc
Q 024665 144 GARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNM------AK---KRTNVIPIIEDARHPAKYRMLVGMV 214 (264)
Q Consensus 144 g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~------a~---~~~nV~~i~~D~~~~~~~~~~~~~f 214 (264)
-.+||++|||.|..+..+++. .+..+|++||+++++++.+.+. +. ..++++++++|+.++... ..++|
T Consensus 151 PkrVLIIGgGdG~tlrelLk~-~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~--~~~~Y 227 (374)
T PRK01581 151 PKRVLILGGGDGLALREVLKY-ETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSS--PSSLY 227 (374)
T ss_pred CCEEEEECCCHHHHHHHHHhc-CCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHh--cCCCc
Confidence 359999999999988877765 3456899999999886544421 11 235899999999986532 34689
Q ss_pred cEEEEcCCCch
Q 024665 215 DVIFSDVAQPD 225 (264)
Q Consensus 215 D~V~~d~p~~~ 225 (264)
|+|++|.+.|.
T Consensus 228 DVIIvDl~DP~ 238 (374)
T PRK01581 228 DVIIIDFPDPA 238 (374)
T ss_pred cEEEEcCCCcc
Confidence 99999988653
No 190
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.41 E-value=1.7e-06 Score=86.99 Aligned_cols=97 Identities=19% Similarity=0.233 Sum_probs=69.9
Q ss_pred CcchHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhC------------------------------------
Q 024665 123 PFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVG------------------------------------ 166 (264)
Q Consensus 123 p~~s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~------------------------------------ 166 (264)
|-+..+++.++.... +.+++..++|.+||||++.+..|....
T Consensus 172 pl~etlAaa~l~~a~--w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~ 249 (702)
T PRK11783 172 PLKENLAAAILLRSG--WPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERAR 249 (702)
T ss_pred CCcHHHHHHHHHHcC--CCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHh
Confidence 445788888885443 226789999999999999999886421
Q ss_pred -----CCCEEEEEeCChHHHHHHHHHhh---cCCCeEEEEcCCCCchhhcccCCCccEEEEcCC
Q 024665 167 -----PNGVVYAVEFSHRSGRDLVNMAK---KRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVA 222 (264)
Q Consensus 167 -----~~g~V~avD~s~~~~~~l~~~a~---~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p 222 (264)
...+|+|+|+++++++.+.+++. ....|++++.|+.+.... ...+.||+|++|||
T Consensus 250 ~~~~~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~-~~~~~~d~IvtNPP 312 (702)
T PRK11783 250 AGLAELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNP-LPKGPTGLVISNPP 312 (702)
T ss_pred hcccccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccc-cccCCCCEEEECCC
Confidence 12379999999888654444433 333689999999886431 11247999999999
No 191
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.38 E-value=3.1e-06 Score=78.29 Aligned_cols=102 Identities=24% Similarity=0.252 Sum_probs=74.6
Q ss_pred eecceEeC---CcchHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCC------------------------
Q 024665 115 KVEYRIWN---PFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGP------------------------ 167 (264)
Q Consensus 115 ~~~yr~~~---p~~s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~------------------------ 167 (264)
+..||+.+ |-...|++.|+... ..++++.++|--||||++.+..|.+...
T Consensus 163 kRGyR~~~g~ApLketLAaAil~la---gw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~ 239 (381)
T COG0116 163 KRGYRVYDGPAPLKETLAAAILLLA---GWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDK 239 (381)
T ss_pred hccccccCCCCCchHHHHHHHHHHc---CCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHH
Confidence 34455533 33367777777443 3788889999999999999999977531
Q ss_pred -------CC-------EEEEEeCChHHHHHHHHHhh---cCCCeEEEEcCCCCchhhcccCCCccEEEEcCC
Q 024665 168 -------NG-------VVYAVEFSHRSGRDLVNMAK---KRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVA 222 (264)
Q Consensus 168 -------~g-------~V~avD~s~~~~~~l~~~a~---~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p 222 (264)
.. .+|++|+++++++-+..++. ..+-|+|++.|++++... . +.+|+|++|||
T Consensus 240 ~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~--~-~~~gvvI~NPP 308 (381)
T COG0116 240 LREEAEERARRGKELPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEP--L-EEYGVVISNPP 308 (381)
T ss_pred HHHHHHHHHhhcCccceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCC--C-CcCCEEEeCCC
Confidence 11 48899999988655544443 344799999999987642 2 78999999999
No 192
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.36 E-value=4.5e-06 Score=72.37 Aligned_cols=76 Identities=18% Similarity=0.068 Sum_probs=55.9
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc-CCCeEEEEcCCCCchhhcccCCCccEEEE
Q 024665 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK-RTNVIPIIEDARHPAKYRMLVGMVDVIFS 219 (264)
Q Consensus 141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~-~~nV~~i~~D~~~~~~~~~~~~~fD~V~~ 219 (264)
..++.+|||+|||+|.++..+++. ..+|+++|+++.+++.+.+.... ..++.++..|+.+.... ..++||+|++
T Consensus 46 ~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~--~~~~fD~Ii~ 120 (233)
T PRK05134 46 GLFGKRVLDVGCGGGILSESMARL---GADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAE--HPGQFDVVTC 120 (233)
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHc---CCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhh--cCCCccEEEE
Confidence 567889999999999999999876 34799999998776554443322 23678888888765421 2368999987
Q ss_pred cC
Q 024665 220 DV 221 (264)
Q Consensus 220 d~ 221 (264)
..
T Consensus 121 ~~ 122 (233)
T PRK05134 121 ME 122 (233)
T ss_pred hh
Confidence 53
No 193
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.34 E-value=3.7e-06 Score=72.23 Aligned_cols=91 Identities=20% Similarity=0.153 Sum_probs=62.2
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC-C-CeEEEEcCCCCchhhcccCCCccEEEEc
Q 024665 143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-T-NVIPIIEDARHPAKYRMLVGMVDVIFSD 220 (264)
Q Consensus 143 ~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~-~-nV~~i~~D~~~~~~~~~~~~~fD~V~~d 220 (264)
.+.+|||+|||+|.++..+++.. .+|+++|+++.+++.+.+..... . ++.+++.|+.+.... ..++||+|+++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~---~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~D~i~~~ 119 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLG---ANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEK--GAKSFDVVTCM 119 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcC---CeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcC--CCCCccEEEeh
Confidence 47899999999999999998752 36999999988865555443322 2 688888988765421 23689999985
Q ss_pred CC-----CchHHHHHHHHHhCCC
Q 024665 221 VA-----QPDQVCFLCLILFQPI 238 (264)
Q Consensus 221 ~p-----~~~~~~~~~~~~l~~~ 238 (264)
.. .+..........+.+.
T Consensus 120 ~~l~~~~~~~~~l~~~~~~L~~g 142 (224)
T TIGR01983 120 EVLEHVPDPQAFIRACAQLLKPG 142 (224)
T ss_pred hHHHhCCCHHHHHHHHHHhcCCC
Confidence 32 3444434444444444
No 194
>PRK04148 hypothetical protein; Provisional
Probab=98.33 E-value=9.2e-06 Score=64.93 Aligned_cols=77 Identities=14% Similarity=0.145 Sum_probs=57.0
Q ss_pred CCCCEEEEEcccCCh-HHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEc
Q 024665 142 KPGARVLYLGAASGT-TVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSD 220 (264)
Q Consensus 142 ~~g~~VLDlG~G~G~-~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d 220 (264)
..+.+|||+|||+|. ++..|++. ...|+|+|+++.+. +.++.. .+.+++.|+.++.. .+-..+|+|.+-
T Consensus 15 ~~~~kileIG~GfG~~vA~~L~~~---G~~ViaIDi~~~aV----~~a~~~-~~~~v~dDlf~p~~--~~y~~a~liysi 84 (134)
T PRK04148 15 GKNKKIVELGIGFYFKVAKKLKES---GFDVIVIDINEKAV----EKAKKL-GLNAFVDDLFNPNL--EIYKNAKLIYSI 84 (134)
T ss_pred ccCCEEEEEEecCCHHHHHHHHHC---CCEEEEEECCHHHH----HHHHHh-CCeEEECcCCCCCH--HHHhcCCEEEEe
Confidence 456799999999996 88888854 35899999999764 333222 47899999998763 234689999987
Q ss_pred CCCchHHH
Q 024665 221 VAQPDQVC 228 (264)
Q Consensus 221 ~p~~~~~~ 228 (264)
-|+|+...
T Consensus 85 rpp~el~~ 92 (134)
T PRK04148 85 RPPRDLQP 92 (134)
T ss_pred CCCHHHHH
Confidence 77665433
No 195
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.32 E-value=1.1e-06 Score=75.39 Aligned_cols=85 Identities=20% Similarity=0.147 Sum_probs=59.7
Q ss_pred hHHHHHHHhcccccCCCC--CCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCC
Q 024665 126 SKLAAAVLGGVDNIWIKP--GARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARH 203 (264)
Q Consensus 126 s~l~~~il~~l~~~~l~~--g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~ 203 (264)
.+++...+..|+ +++ ..-|||+|||||..+..+.+. .-..++||+|+.|++...+..- .-.++.+|+-+
T Consensus 34 ~em~eRaLELLa---lp~~~~~~iLDIGCGsGLSg~vL~~~---Gh~wiGvDiSpsML~~a~~~e~---egdlil~DMG~ 104 (270)
T KOG1541|consen 34 AEMAERALELLA---LPGPKSGLILDIGCGSGLSGSVLSDS---GHQWIGVDISPSMLEQAVEREL---EGDLILCDMGE 104 (270)
T ss_pred HHHHHHHHHHhh---CCCCCCcEEEEeccCCCcchheeccC---CceEEeecCCHHHHHHHHHhhh---hcCeeeeecCC
Confidence 445555554444 544 668999999999999999875 2479999999999766554221 23577888876
Q ss_pred chhhcccCCCccEEEEcC
Q 024665 204 PAKYRMLVGMVDVIFSDV 221 (264)
Q Consensus 204 ~~~~~~~~~~fD~V~~d~ 221 (264)
..++ ..+.||.||+--
T Consensus 105 Glpf--rpGtFDg~ISIS 120 (270)
T KOG1541|consen 105 GLPF--RPGTFDGVISIS 120 (270)
T ss_pred CCCC--CCCccceEEEee
Confidence 5543 467999998643
No 196
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.26 E-value=3.1e-06 Score=80.71 Aligned_cols=75 Identities=29% Similarity=0.260 Sum_probs=51.7
Q ss_pred CCEEEEEcccCChHHHHHHHH---hCCCCEEEEEeCChHHHHHHH---HHhhcCCCeEEEEcCCCCchhhcccCCCccEE
Q 024665 144 GARVLYLGAASGTTVSHVSDI---VGPNGVVYAVEFSHRSGRDLV---NMAKKRTNVIPIIEDARHPAKYRMLVGMVDVI 217 (264)
Q Consensus 144 g~~VLDlG~G~G~~s~~la~~---~~~~g~V~avD~s~~~~~~l~---~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V 217 (264)
+..|||+|||+|.++..+++. ...+.+|||||.++.+...+. +.+.-..+|+++++|+++.. +.+++|+|
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~----lpekvDII 262 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVE----LPEKVDII 262 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSC----HSS-EEEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCC----CCCceeEE
Confidence 568999999999998766544 234569999999986654433 33444468999999999976 34699999
Q ss_pred EEcCC
Q 024665 218 FSDVA 222 (264)
Q Consensus 218 ~~d~p 222 (264)
++-.-
T Consensus 263 VSElL 267 (448)
T PF05185_consen 263 VSELL 267 (448)
T ss_dssp EE---
T ss_pred EEecc
Confidence 98655
No 197
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.24 E-value=5.7e-06 Score=69.39 Aligned_cols=70 Identities=21% Similarity=0.181 Sum_probs=54.3
Q ss_pred CEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC--CCeEEEEcCCCCchhhcccCCCccEEEEcCC
Q 024665 145 ARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIFSDVA 222 (264)
Q Consensus 145 ~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~--~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p 222 (264)
+.+.|||+|||.++...|... -+|||||.+|..++-+.++.+.. .|++++.+|+++.. .+..|+|+|.+.
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~A---~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~-----fe~ADvvicEml 105 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHAA---ERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYD-----FENADVVICEML 105 (252)
T ss_pred hceeeccCCcchHHHHHHhhh---ceEEEEecCcHHHHHhhhcCCCCCCcceEEEeccccccc-----ccccceeHHHHh
Confidence 789999999999999999874 38999999986654333332222 39999999999865 268999998654
No 198
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.23 E-value=4.5e-06 Score=75.65 Aligned_cols=82 Identities=18% Similarity=0.122 Sum_probs=51.4
Q ss_pred CCCCCCEEEEEcccCChHHHHHHHHh------CCCCEEEEEeCChHHHHHHHHHhhcC----CCeEEEEcCCCCchhhcc
Q 024665 140 WIKPGARVLYLGAASGTTVSHVSDIV------GPNGVVYAVEFSHRSGRDLVNMAKKR----TNVIPIIEDARHPAKYRM 209 (264)
Q Consensus 140 ~l~~g~~VLDlG~G~G~~s~~la~~~------~~~g~V~avD~s~~~~~~l~~~a~~~----~nV~~i~~D~~~~~~~~~ 209 (264)
.++++++|||.+||+|.+.+.+.+.+ .....+||+|+++.++.-........ .+..+++.|....+.. .
T Consensus 43 ~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~-~ 121 (311)
T PF02384_consen 43 NPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKF-I 121 (311)
T ss_dssp TT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSC-T
T ss_pred hccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccccccccccccccccc-c
Confidence 47788899999999999999988864 24668999999986643222111111 2456889998765432 1
Q ss_pred cCCCccEEEEcCC
Q 024665 210 LVGMVDVIFSDVA 222 (264)
Q Consensus 210 ~~~~fD~V~~d~p 222 (264)
...+||+|++|||
T Consensus 122 ~~~~~D~ii~NPP 134 (311)
T PF02384_consen 122 KNQKFDVIIGNPP 134 (311)
T ss_dssp ST--EEEEEEE--
T ss_pred cccccccccCCCC
Confidence 1368999999999
No 199
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.22 E-value=2.4e-06 Score=74.11 Aligned_cols=99 Identities=15% Similarity=0.080 Sum_probs=64.2
Q ss_pred CCCCC-EEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEE-------EcCCCCchhhcccCC
Q 024665 141 IKPGA-RVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPI-------IEDARHPAKYRMLVG 212 (264)
Q Consensus 141 l~~g~-~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i-------~~D~~~~~~~~~~~~ 212 (264)
..++. .++|+|||+|-.+..+|++.. +|+|+|+|+.|+ +.+++.+++... ..+..++. -.++
T Consensus 30 ~~~~h~~a~DvG~G~Gqa~~~iae~~k---~VIatD~s~~mL----~~a~k~~~~~y~~t~~~ms~~~~v~L~---g~e~ 99 (261)
T KOG3010|consen 30 RTEGHRLAWDVGTGNGQAARGIAEHYK---EVIATDVSEAML----KVAKKHPPVTYCHTPSTMSSDEMVDLL---GGEE 99 (261)
T ss_pred hCCCcceEEEeccCCCcchHHHHHhhh---hheeecCCHHHH----HHhhcCCCcccccCCcccccccccccc---CCCc
Confidence 44555 899999999988889999865 899999999774 455554443322 22222222 1257
Q ss_pred CccEEEEcCCCchHHHHHHHHHhCCCcHHHHHHHHHHhh--cchhhhhhh
Q 024665 213 MVDVIFSDVAQPDQVCFLCLILFQPIVINNLQSVNNETK--GGIFEFLFS 260 (264)
Q Consensus 213 ~fD~V~~d~p~~~~~~~~~~~~l~~~~~~~l~~~~~~Lk--~g~f~~l~~ 260 (264)
++|+|++- ...|.-.+....+.+.+.|+ +++++++.+
T Consensus 100 SVDlI~~A-----------qa~HWFdle~fy~~~~rvLRk~Gg~iavW~Y 138 (261)
T KOG3010|consen 100 SVDLITAA-----------QAVHWFDLERFYKEAYRVLRKDGGLIAVWNY 138 (261)
T ss_pred ceeeehhh-----------hhHHhhchHHHHHHHHHHcCCCCCEEEEEEc
Confidence 89999863 22334445566777777787 446666643
No 200
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=98.16 E-value=1.6e-05 Score=72.13 Aligned_cols=94 Identities=18% Similarity=0.215 Sum_probs=71.8
Q ss_pred chHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc-CCCeEEEEcCCCC
Q 024665 125 RSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK-RTNVIPIIEDARH 203 (264)
Q Consensus 125 ~s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~-~~nV~~i~~D~~~ 203 (264)
.+-|..+++..|. ++|+..+||.-+|.|.-|..+++.+. .++|||+|.++.++....+.... ..++++++.+..+
T Consensus 5 ~pVll~Evl~~L~---~~~ggiyVD~TlG~GGHS~~iL~~l~-~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~ 80 (305)
T TIGR00006 5 QSVLLDEVVEGLN---IKPDGIYIDCTLGFGGHSKAILEQLG-TGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFAN 80 (305)
T ss_pred cchhHHHHHHhcC---cCCCCEEEEeCCCChHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHH
Confidence 4567777776665 88999999999999999999999875 48999999999876444333222 2379999999988
Q ss_pred chhhc--ccCCCccEEEEcCC
Q 024665 204 PAKYR--MLVGMVDVIFSDVA 222 (264)
Q Consensus 204 ~~~~~--~~~~~fD~V~~d~p 222 (264)
+..+- ....++|.|++|.-
T Consensus 81 l~~~l~~~~~~~vDgIl~DLG 101 (305)
T TIGR00006 81 FFEHLDELLVTKIDGILVDLG 101 (305)
T ss_pred HHHHHHhcCCCcccEEEEecc
Confidence 76431 12357999999865
No 201
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=1.4e-05 Score=68.13 Aligned_cols=95 Identities=22% Similarity=0.242 Sum_probs=70.5
Q ss_pred hHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEE-EEEeCChHHHHHHHHHhh------------cCC
Q 024665 126 SKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVV-YAVEFSHRSGRDLVNMAK------------KRT 192 (264)
Q Consensus 126 s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V-~avD~s~~~~~~l~~~a~------------~~~ 192 (264)
+.+.+.++..|+ -+++||.+.||+|+|||++|..++.+++..+.+ .+||.-+++++..+++.. ++.
T Consensus 66 p~mha~~le~L~-~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~ 144 (237)
T KOG1661|consen 66 PHMHATALEYLD-DHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRG 144 (237)
T ss_pred hHHHHHHHHHHH-HhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccC
Confidence 345566665553 148899999999999999999999999888764 999998876544443322 123
Q ss_pred CeEEEEcCCCCchhhcccCCCccEEEEcCCCc
Q 024665 193 NVIPIIEDARHPAKYRMLVGMVDVIFSDVAQP 224 (264)
Q Consensus 193 nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p~~ 224 (264)
++.++.+|.+.... ...+||+|.+-+..+
T Consensus 145 ~l~ivvGDgr~g~~---e~a~YDaIhvGAaa~ 173 (237)
T KOG1661|consen 145 ELSIVVGDGRKGYA---EQAPYDAIHVGAAAS 173 (237)
T ss_pred ceEEEeCCccccCC---ccCCcceEEEccCcc
Confidence 78899999988653 346899999986644
No 202
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.13 E-value=3.5e-05 Score=66.17 Aligned_cols=84 Identities=20% Similarity=0.198 Sum_probs=50.4
Q ss_pred cCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHH---HHHHHHhh-------c-CCCeEEEEcCCCCchhh
Q 024665 139 IWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSG---RDLVNMAK-------K-RTNVIPIIEDARHPAKY 207 (264)
Q Consensus 139 ~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~---~~l~~~a~-------~-~~nV~~i~~D~~~~~~~ 207 (264)
+.+.+++..+|||||.|...+.+|...+ -.++++||+.+... +.+.+... . ...++++++|+.+....
T Consensus 38 ~~l~~~dvF~DlGSG~G~~v~~aal~~~-~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~ 116 (205)
T PF08123_consen 38 LNLTPDDVFYDLGSGVGNVVFQAALQTG-CKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFV 116 (205)
T ss_dssp TT--TT-EEEEES-TTSHHHHHHHHHH---SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHH
T ss_pred hCCCCCCEEEECCCCCCHHHHHHHHHcC-CcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhH
Confidence 3489999999999999999999987753 44699999996442 22222111 1 23788999999886533
Q ss_pred cccCCCccEEEEcCCC
Q 024665 208 RMLVGMVDVIFSDVAQ 223 (264)
Q Consensus 208 ~~~~~~fD~V~~d~p~ 223 (264)
.......|+||+|-..
T Consensus 117 ~~~~s~AdvVf~Nn~~ 132 (205)
T PF08123_consen 117 KDIWSDADVVFVNNTC 132 (205)
T ss_dssp HHHGHC-SEEEE--TT
T ss_pred hhhhcCCCEEEEeccc
Confidence 2334678999998663
No 203
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.13 E-value=6.1e-06 Score=80.00 Aligned_cols=84 Identities=14% Similarity=0.159 Sum_probs=64.0
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC--CCeEEEEcCCCCchhhcccCCCccEEEE
Q 024665 142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIFS 219 (264)
Q Consensus 142 ~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~--~nV~~i~~D~~~~~~~~~~~~~fD~V~~ 219 (264)
.....+||+|||.|.++..+|... |+..++|||++...+..++..+... .|+.+++.|+..+..+ ....++|.|++
T Consensus 346 ~~~p~~lEIG~G~G~~~~~~A~~~-p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~-~~~~sv~~i~i 423 (506)
T PRK01544 346 EKRKVFLEIGFGMGEHFINQAKMN-PDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILND-LPNNSLDGIYI 423 (506)
T ss_pred CCCceEEEECCCchHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHh-cCcccccEEEE
Confidence 346789999999999999999884 6778999999965555555544332 3999999887654432 34468999999
Q ss_pred cCCCchHH
Q 024665 220 DVAQPDQV 227 (264)
Q Consensus 220 d~p~~~~~ 227 (264)
+.|.||..
T Consensus 424 ~FPDPWpK 431 (506)
T PRK01544 424 LFPDPWIK 431 (506)
T ss_pred ECCCCCCC
Confidence 99988754
No 204
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.12 E-value=1.9e-05 Score=65.88 Aligned_cols=106 Identities=22% Similarity=0.197 Sum_probs=51.4
Q ss_pred ceecceEeCCcchHHHHHHHhccc---ccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHH---HHHHH
Q 024665 114 TKVEYRIWNPFRSKLAAAVLGGVD---NIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGR---DLVNM 187 (264)
Q Consensus 114 ~~~~yr~~~p~~s~l~~~il~~l~---~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~---~l~~~ 187 (264)
.-..+.+|. -+.-|+..+..... .....++.+|||||||+|..++.+|... ...+|+..|.++ ++. .+++.
T Consensus 14 ~~~G~~vW~-aa~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~~-~~~~Vv~TD~~~-~l~~l~~Ni~~ 90 (173)
T PF10294_consen 14 DGTGGKVWP-AALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKLF-GAARVVLTDYNE-VLELLRRNIEL 90 (173)
T ss_dssp ----------HHHHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT--T-SEEEEEE-S--HHHHHHHHHHT
T ss_pred cCCcEEEec-hHHHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhcc-CCceEEEeccch-hhHHHHHHHHh
Confidence 344566672 23344544543221 1246678899999999999999999874 456899999997 433 33333
Q ss_pred hh--cCCCeEEEEcCCCCchhhccc-CCCccEEE-EcCC
Q 024665 188 AK--KRTNVIPIIEDARHPAKYRML-VGMVDVIF-SDVA 222 (264)
Q Consensus 188 a~--~~~nV~~i~~D~~~~~~~~~~-~~~fD~V~-~d~p 222 (264)
|. ...+|.+...|..+....... ..+||+|+ +|+.
T Consensus 91 N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~IlasDv~ 129 (173)
T PF10294_consen 91 NGSLLDGRVSVRPLDWGDELDSDLLEPHSFDVILASDVL 129 (173)
T ss_dssp T--------EEEE--TTS-HHHHHHS-SSBSEEEEES--
T ss_pred ccccccccccCcEEEecCcccccccccccCCEEEEeccc
Confidence 32 234788888887663311122 34899999 5655
No 205
>PLN02823 spermine synthase
Probab=98.09 E-value=2.6e-05 Score=71.77 Aligned_cols=78 Identities=22% Similarity=0.196 Sum_probs=59.4
Q ss_pred CCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhh------cCCCeEEEEcCCCCchhhcccCCCccEE
Q 024665 144 GARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAK------KRTNVIPIIEDARHPAKYRMLVGMVDVI 217 (264)
Q Consensus 144 g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~------~~~nV~~i~~D~~~~~~~~~~~~~fD~V 217 (264)
-.+||.+|+|.|.++..+++.. +..+|+.||+++.+++-+.+... ..++++++++|+++... ...++||+|
T Consensus 104 pk~VLiiGgG~G~~~re~l~~~-~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~--~~~~~yDvI 180 (336)
T PLN02823 104 PKTVFIMGGGEGSTAREVLRHK-TVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELE--KRDEKFDVI 180 (336)
T ss_pred CCEEEEECCCchHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHh--hCCCCccEE
Confidence 3689999999999998888752 34589999999988655444332 13589999999998653 234689999
Q ss_pred EEcCCCc
Q 024665 218 FSDVAQP 224 (264)
Q Consensus 218 ~~d~p~~ 224 (264)
++|.+.|
T Consensus 181 i~D~~dp 187 (336)
T PLN02823 181 IGDLADP 187 (336)
T ss_pred EecCCCc
Confidence 9997654
No 206
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=98.06 E-value=3.3e-06 Score=72.75 Aligned_cols=89 Identities=26% Similarity=0.243 Sum_probs=62.2
Q ss_pred chHHHHHHHhcccccCCCCC-CEEEEEcccCChHHHHHHHHhCC----CC----EEEEEeCChHHHHHHHHHhhcCCCeE
Q 024665 125 RSKLAAAVLGGVDNIWIKPG-ARVLYLGAASGTTVSHVSDIVGP----NG----VVYAVEFSHRSGRDLVNMAKKRTNVI 195 (264)
Q Consensus 125 ~s~l~~~il~~l~~~~l~~g-~~VLDlG~G~G~~s~~la~~~~~----~g----~V~avD~s~~~~~~l~~~a~~~~nV~ 195 (264)
+..-+-++|..=+++++-.| .+|+|||+++|+|+..|++.+.. .+ +|+|||+.+ ++.. .-|.
T Consensus 22 RARSAFKLlqideef~i~~gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~--------MaPI-~GV~ 92 (294)
T KOG1099|consen 22 RARSAFKLLQIDEEFQIFEGVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQP--------MAPI-EGVI 92 (294)
T ss_pred hHHhHHHHhhhhhhhhHHhhhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEeccc--------CCcc-CceE
Confidence 44444455544445555444 57999999999999999988753 11 399999986 2333 3688
Q ss_pred EEEcCCCCchhh-----cccCCCccEEEEcCC
Q 024665 196 PIIEDARHPAKY-----RMLVGMVDVIFSDVA 222 (264)
Q Consensus 196 ~i~~D~~~~~~~-----~~~~~~fD~V~~d~p 222 (264)
.+++|+++.... .+-.++.|+|++|-+
T Consensus 93 qlq~DIT~~stae~Ii~hfggekAdlVvcDGA 124 (294)
T KOG1099|consen 93 QLQGDITSASTAEAIIEHFGGEKADLVVCDGA 124 (294)
T ss_pred EeecccCCHhHHHHHHHHhCCCCccEEEeCCC
Confidence 999999986532 122358999999966
No 207
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.05 E-value=9.4e-06 Score=70.32 Aligned_cols=74 Identities=22% Similarity=0.241 Sum_probs=56.7
Q ss_pred CCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc--------------CCCeEEEEcCCCCch
Q 024665 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK--------------RTNVIPIIEDARHPA 205 (264)
Q Consensus 140 ~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~--------------~~nV~~i~~D~~~~~ 205 (264)
..+++.+||..|||.|.....||+. .-.|+++|+|+.+++.+.+.+.. ..+|+++++|+.++.
T Consensus 34 ~~~~~~rvLvPgCG~g~D~~~La~~---G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~ 110 (218)
T PF05724_consen 34 ALKPGGRVLVPGCGKGYDMLWLAEQ---GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELP 110 (218)
T ss_dssp TTSTSEEEEETTTTTSCHHHHHHHT---TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGG
T ss_pred CCCCCCeEEEeCCCChHHHHHHHHC---CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCC
Confidence 4788899999999999999999987 34899999999887776544432 126899999999876
Q ss_pred hhcccCCCccEEE
Q 024665 206 KYRMLVGMVDVIF 218 (264)
Q Consensus 206 ~~~~~~~~fD~V~ 218 (264)
+. ..++||+|+
T Consensus 111 ~~--~~g~fD~iy 121 (218)
T PF05724_consen 111 PE--DVGKFDLIY 121 (218)
T ss_dssp GS--CHHSEEEEE
T ss_pred hh--hcCCceEEE
Confidence 42 235899997
No 208
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.04 E-value=2.4e-06 Score=74.10 Aligned_cols=73 Identities=29% Similarity=0.304 Sum_probs=53.9
Q ss_pred EEEEEcccCChHHHHHHHHhCCC--CEEEEEeCChHHHHHHHHHhhcCC-CeEEEEcCCCCch-hhcccCCCccEEEE
Q 024665 146 RVLYLGAASGTTVSHVSDIVGPN--GVVYAVEFSHRSGRDLVNMAKKRT-NVIPIIEDARHPA-KYRMLVGMVDVIFS 219 (264)
Q Consensus 146 ~VLDlG~G~G~~s~~la~~~~~~--g~V~avD~s~~~~~~l~~~a~~~~-nV~~i~~D~~~~~-~~~~~~~~fD~V~~ 219 (264)
+||++|||.|.++..+.+.. ++ -+|||+|+|+++++-..+...... ++.....|++.+. ......+++|+|++
T Consensus 74 ~ilEvGCGvGNtvfPll~~~-~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~ 150 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTS-PNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITL 150 (264)
T ss_pred hheeeccCCCcccchhhhcC-CCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEE
Confidence 79999999999999998764 44 689999999988754444333222 7888888887765 33344568898765
No 209
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=97.97 E-value=1e-05 Score=78.22 Aligned_cols=89 Identities=24% Similarity=0.238 Sum_probs=63.4
Q ss_pred chHHHHHHHhccccc-CCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCC
Q 024665 125 RSKLAAAVLGGVDNI-WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARH 203 (264)
Q Consensus 125 ~s~l~~~il~~l~~~-~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~ 203 (264)
++.-+-.++..-.++ .|++...||||||++|.|...+++.+...+.|++||+-| + +.-+|+..++.|++.
T Consensus 25 rsRsaFKLlQln~ky~fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~p------i---kp~~~c~t~v~dItt 95 (780)
T KOG1098|consen 25 RSRSAFKLLQLNKKYKFLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVP------I---KPIPNCDTLVEDITT 95 (780)
T ss_pred hHHHHHHHHHHHHHhccccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeee------c---ccCCccchhhhhhhH
Confidence 444444444332333 478999999999999999999999999889999999986 1 223478888888865
Q ss_pred chhh---c--ccCCCccEEEEcCC
Q 024665 204 PAKY---R--MLVGMVDVIFSDVA 222 (264)
Q Consensus 204 ~~~~---~--~~~~~fD~V~~d~p 222 (264)
.... + +..-+.|+|+.|.+
T Consensus 96 d~cr~~l~k~l~t~~advVLhDga 119 (780)
T KOG1098|consen 96 DECRSKLRKILKTWKADVVLHDGA 119 (780)
T ss_pred HHHHHHHHHHHHhCCCcEEeecCC
Confidence 3211 0 11226799999987
No 210
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=97.91 E-value=3.8e-06 Score=72.51 Aligned_cols=84 Identities=20% Similarity=0.217 Sum_probs=53.7
Q ss_pred hHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCch
Q 024665 126 SKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPA 205 (264)
Q Consensus 126 s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~ 205 (264)
+.+.++++..++ ..+=.++||||||||-....|-+++. ++++||+|+.|++...++-.. =+..+.|+..+.
T Consensus 111 P~~l~emI~~~~---~g~F~~~lDLGCGTGL~G~~lR~~a~---~ltGvDiS~nMl~kA~eKg~Y---D~L~~Aea~~Fl 181 (287)
T COG4976 111 PELLAEMIGKAD---LGPFRRMLDLGCGTGLTGEALRDMAD---RLTGVDISENMLAKAHEKGLY---DTLYVAEAVLFL 181 (287)
T ss_pred HHHHHHHHHhcc---CCccceeeecccCcCcccHhHHHHHh---hccCCchhHHHHHHHHhccch---HHHHHHHHHHHh
Confidence 344444444433 55567999999999999999999865 899999999885443332211 123444544333
Q ss_pred hhcccCCCccEEEE
Q 024665 206 KYRMLVGMVDVIFS 219 (264)
Q Consensus 206 ~~~~~~~~fD~V~~ 219 (264)
.. ...+.||+|.+
T Consensus 182 ~~-~~~er~DLi~A 194 (287)
T COG4976 182 ED-LTQERFDLIVA 194 (287)
T ss_pred hh-ccCCcccchhh
Confidence 11 12358999974
No 211
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.90 E-value=7e-05 Score=64.72 Aligned_cols=81 Identities=23% Similarity=0.228 Sum_probs=63.8
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHH---HHHHHHhhcCCCeEEEEcCCCCchhh---cccCCCc
Q 024665 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSG---RDLVNMAKKRTNVIPIIEDARHPAKY---RMLVGMV 214 (264)
Q Consensus 141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~---~~l~~~a~~~~nV~~i~~D~~~~~~~---~~~~~~f 214 (264)
+-..+++||||.=+|+.++.+|..+.+.|+|+++|+++..+ .++.+.+.....|.++++++.+.... ....+.|
T Consensus 71 ~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tf 150 (237)
T KOG1663|consen 71 LLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTF 150 (237)
T ss_pred HhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCce
Confidence 44557999999999999999999999999999999997553 44555555556899999999875421 1124589
Q ss_pred cEEEEcC
Q 024665 215 DVIFSDV 221 (264)
Q Consensus 215 D~V~~d~ 221 (264)
|.+|+|.
T Consensus 151 DfaFvDa 157 (237)
T KOG1663|consen 151 DFAFVDA 157 (237)
T ss_pred eEEEEcc
Confidence 9999985
No 212
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=97.87 E-value=0.0001 Score=66.42 Aligned_cols=91 Identities=16% Similarity=0.083 Sum_probs=57.8
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc--CC-CeEEEEcCCCCchhhcccCCCccEEE
Q 024665 142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK--RT-NVIPIIEDARHPAKYRMLVGMVDVIF 218 (264)
Q Consensus 142 ~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~--~~-nV~~i~~D~~~~~~~~~~~~~fD~V~ 218 (264)
-.|.+||||||++|+++..|+.. .+..|+++|-++....+....+.. .. ++..+-.-+.+++ . .+.||+||
T Consensus 114 L~gk~VLDIGC~nGY~~frM~~~--GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp---~-~~~FDtVF 187 (315)
T PF08003_consen 114 LKGKRVLDIGCNNGYYSFRMLGR--GAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLP---N-LGAFDTVF 187 (315)
T ss_pred cCCCEEEEecCCCcHHHHHHhhc--CCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhcc---c-cCCcCEEE
Confidence 36889999999999999999987 466899999996553332222221 12 2333323334433 1 46899999
Q ss_pred EcCC-----CchHHHHHHHHHhCCC
Q 024665 219 SDVA-----QPDQVCFLCLILFQPI 238 (264)
Q Consensus 219 ~d~p-----~~~~~~~~~~~~l~~~ 238 (264)
+=-. .|-.......+.++++
T Consensus 188 ~MGVLYHrr~Pl~~L~~Lk~~L~~g 212 (315)
T PF08003_consen 188 SMGVLYHRRSPLDHLKQLKDSLRPG 212 (315)
T ss_pred EeeehhccCCHHHHHHHHHHhhCCC
Confidence 7432 5555555555666554
No 213
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=97.87 E-value=5.4e-05 Score=64.54 Aligned_cols=89 Identities=16% Similarity=0.169 Sum_probs=62.7
Q ss_pred EEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC--CCeE-EEEcCCCCchhhcccCCCccEEEEcCC
Q 024665 146 RVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVI-PIIEDARHPAKYRMLVGMVDVIFSDVA 222 (264)
Q Consensus 146 ~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~--~nV~-~i~~D~~~~~~~~~~~~~fD~V~~d~p 222 (264)
.||++|||||.--...-.. |...|+.+|-++.|-+.+.+.+.++ .+++ ++.+|.++++.. .+.++|+|++...
T Consensus 79 ~vLEvgcGtG~Nfkfy~~~--p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l--~d~s~DtVV~Tlv 154 (252)
T KOG4300|consen 79 DVLEVGCGTGANFKFYPWK--PINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQL--ADGSYDTVVCTLV 154 (252)
T ss_pred ceEEecccCCCCcccccCC--CCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCccc--ccCCeeeEEEEEE
Confidence 4799999999976666543 7789999999998855555544332 3788 999999987742 3569999986544
Q ss_pred -----CchHHHHHHHHHhCCC
Q 024665 223 -----QPDQVCFLCLILFQPI 238 (264)
Q Consensus 223 -----~~~~~~~~~~~~l~~~ 238 (264)
.|.+.....-..++|+
T Consensus 155 LCSve~~~k~L~e~~rlLRpg 175 (252)
T KOG4300|consen 155 LCSVEDPVKQLNEVRRLLRPG 175 (252)
T ss_pred EeccCCHHHHHHHHHHhcCCC
Confidence 4445544555555565
No 214
>KOG2730 consensus Methylase [General function prediction only]
Probab=97.84 E-value=7e-05 Score=64.32 Aligned_cols=93 Identities=14% Similarity=0.089 Sum_probs=61.9
Q ss_pred eCCcc-hHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc-------CC
Q 024665 121 WNPFR-SKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK-------RT 192 (264)
Q Consensus 121 ~~p~~-s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~-------~~ 192 (264)
|.-++ .+.+.++...+... + ..+.|+|..||.|.-++..|... ..|++||+++.- +.+++. .+
T Consensus 73 wfsvTpe~ia~~iA~~v~~~-~-~~~~iidaf~g~gGntiqfa~~~---~~VisIdiDPik----Ia~AkhNaeiYGI~~ 143 (263)
T KOG2730|consen 73 WFSVTPEKIAEHIANRVVAC-M-NAEVIVDAFCGVGGNTIQFALQG---PYVIAIDIDPVK----IACARHNAEVYGVPD 143 (263)
T ss_pred eEEeccHHHHHHHHHHHHHh-c-CcchhhhhhhcCCchHHHHHHhC---CeEEEEeccHHH----HHHHhccceeecCCc
Confidence 44344 34444444433321 2 45689999999999999999774 379999999733 233332 23
Q ss_pred CeEEEEcCCCCchhhccc-CCCccEEEEcCC
Q 024665 193 NVIPIIEDARHPAKYRML-VGMVDVIFSDVA 222 (264)
Q Consensus 193 nV~~i~~D~~~~~~~~~~-~~~fD~V~~d~p 222 (264)
+|+||++|..+..+..+. ...+|+|+..+|
T Consensus 144 rItFI~GD~ld~~~~lq~~K~~~~~vf~spp 174 (263)
T KOG2730|consen 144 RITFICGDFLDLASKLKADKIKYDCVFLSPP 174 (263)
T ss_pred eeEEEechHHHHHHHHhhhhheeeeeecCCC
Confidence 899999999886543222 235889998887
No 215
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=97.78 E-value=9.5e-05 Score=65.21 Aligned_cols=79 Identities=25% Similarity=0.242 Sum_probs=57.1
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhh------cCCCeEEEEcCCCCchhhcccCC-Ccc
Q 024665 143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAK------KRTNVIPIIEDARHPAKYRMLVG-MVD 215 (264)
Q Consensus 143 ~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~------~~~nV~~i~~D~~~~~~~~~~~~-~fD 215 (264)
.-.+||=||-|.|..+..+.+.- +..+|+.||+++.+++-+.+.-. ..+++++++.|+..+... ..+ +||
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~-~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~--~~~~~yD 152 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHP-PVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKE--TQEEKYD 152 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTST-T-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHT--SSST-EE
T ss_pred CcCceEEEcCCChhhhhhhhhcC-CcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHh--ccCCccc
Confidence 56799999999999999998762 34689999999877544433221 235899999999886642 334 899
Q ss_pred EEEEcCCCc
Q 024665 216 VIFSDVAQP 224 (264)
Q Consensus 216 ~V~~d~p~~ 224 (264)
+|++|.+.|
T Consensus 153 vIi~D~~dp 161 (246)
T PF01564_consen 153 VIIVDLTDP 161 (246)
T ss_dssp EEEEESSST
T ss_pred EEEEeCCCC
Confidence 999998864
No 216
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=97.77 E-value=0.00013 Score=67.03 Aligned_cols=93 Identities=19% Similarity=0.105 Sum_probs=57.8
Q ss_pred hHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhh--------cC----CC
Q 024665 126 SKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAK--------KR----TN 193 (264)
Q Consensus 126 s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~--------~~----~n 193 (264)
+.|+...+..+. .-.++.+|||||||-|....-+... ....++++|++..+++++.+.-. .. -.
T Consensus 47 s~LI~~~~~~~~--~~~~~~~VLDl~CGkGGDL~Kw~~~--~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~ 122 (331)
T PF03291_consen 47 SVLIQKYAKKVK--QNRPGLTVLDLCCGKGGDLQKWQKA--KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFI 122 (331)
T ss_dssp HHHHHHHCHCCC--CTTTT-EEEEET-TTTTTHHHHHHT--T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCE
T ss_pred HHHHHHHHHhhh--ccCCCCeEEEecCCCchhHHHHHhc--CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccch
Confidence 456655554332 1128899999999999988887765 46699999999888766665541 11 25
Q ss_pred eEEEEcCCCCchhhc-ccC--CCccEEEEcCC
Q 024665 194 VIPIIEDARHPAKYR-MLV--GMVDVIFSDVA 222 (264)
Q Consensus 194 V~~i~~D~~~~~~~~-~~~--~~fD~V~~d~p 222 (264)
..++..|........ ... .+||+|-+-.+
T Consensus 123 a~f~~~D~f~~~l~~~~~~~~~~FDvVScQFa 154 (331)
T PF03291_consen 123 AEFIAADCFSESLREKLPPRSRKFDVVSCQFA 154 (331)
T ss_dssp EEEEESTTCCSHHHCTSSSTTS-EEEEEEES-
T ss_pred hheeccccccchhhhhccccCCCcceeehHHH
Confidence 678899987543211 122 38999988655
No 217
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=97.76 E-value=0.0001 Score=71.79 Aligned_cols=80 Identities=5% Similarity=0.071 Sum_probs=53.5
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCC-------CCEEEEEeCChHHHHHHHHHhhcCC--CeEEEEcCCCCchhh--cccC
Q 024665 143 PGARVLYLGAASGTTVSHVSDIVGP-------NGVVYAVEFSHRSGRDLVNMAKKRT--NVIPIIEDARHPAKY--RMLV 211 (264)
Q Consensus 143 ~g~~VLDlG~G~G~~s~~la~~~~~-------~g~V~avD~s~~~~~~l~~~a~~~~--nV~~i~~D~~~~~~~--~~~~ 211 (264)
...+|||.|||+|.+.+.+++.+.. .-.++++|+++.++..+........ .+.+++.|....... ....
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL 110 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence 4468999999999999999987631 2479999999877654433322222 455666664432110 0123
Q ss_pred CCccEEEEcCC
Q 024665 212 GMVDVIFSDVA 222 (264)
Q Consensus 212 ~~fD~V~~d~p 222 (264)
+.||+|+.|||
T Consensus 111 ~~fD~IIgNPP 121 (524)
T TIGR02987 111 DLFDIVITNPP 121 (524)
T ss_pred CcccEEEeCCC
Confidence 57999999999
No 218
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=97.72 E-value=0.00012 Score=63.84 Aligned_cols=81 Identities=25% Similarity=0.229 Sum_probs=49.0
Q ss_pred CCCCCC--EEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHH---HHHHHHHhhcC--------CCeEEEEcCCCCchh
Q 024665 140 WIKPGA--RVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRS---GRDLVNMAKKR--------TNVIPIIEDARHPAK 206 (264)
Q Consensus 140 ~l~~g~--~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~---~~~l~~~a~~~--------~nV~~i~~D~~~~~~ 206 (264)
.++++. +|||+-||-|.-++.+|.. + ++|+++|.|+-+ +++-++.+... .+|+++++|+.+...
T Consensus 70 Glk~~~~~~VLDaTaGLG~Da~vlA~~-G--~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~ 146 (234)
T PF04445_consen 70 GLKPGMRPSVLDATAGLGRDAFVLASL-G--CKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLR 146 (234)
T ss_dssp T-BTTB---EEETT-TTSHHHHHHHHH-T----EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCC
T ss_pred CCCCCCCCEEEECCCcchHHHHHHHcc-C--CeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHh
Confidence 467764 8999999999999999975 3 589999999754 33333333221 179999999998764
Q ss_pred hcccCCCccEEEEcCCCch
Q 024665 207 YRMLVGMVDVIFSDVAQPD 225 (264)
Q Consensus 207 ~~~~~~~fD~V~~d~p~~~ 225 (264)
....+||+|.+||-.|.
T Consensus 147 --~~~~s~DVVY~DPMFp~ 163 (234)
T PF04445_consen 147 --QPDNSFDVVYFDPMFPE 163 (234)
T ss_dssp --CHSS--SEEEE--S---
T ss_pred --hcCCCCCEEEECCCCCC
Confidence 34579999999998544
No 219
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=97.60 E-value=0.00012 Score=63.71 Aligned_cols=46 Identities=15% Similarity=0.144 Sum_probs=37.8
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHH
Q 024665 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNM 187 (264)
Q Consensus 141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~ 187 (264)
......+||+||-+|.+|+++|..+++. .|.++||++..++.+.++
T Consensus 56 ~f~~~~~LDIGCNsG~lt~~iak~F~~r-~iLGvDID~~LI~~Ark~ 101 (288)
T KOG2899|consen 56 WFEPKQALDIGCNSGFLTLSIAKDFGPR-RILGVDIDPVLIQRARKE 101 (288)
T ss_pred ccCcceeEeccCCcchhHHHHHHhhccc-eeeEeeccHHHHHHHHHh
Confidence 4455689999999999999999998754 699999999776555443
No 220
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.58 E-value=0.00025 Score=56.42 Aligned_cols=57 Identities=23% Similarity=0.119 Sum_probs=45.0
Q ss_pred EEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC--CCeEEEEcCCCC
Q 024665 146 RVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARH 203 (264)
Q Consensus 146 ~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~--~nV~~i~~D~~~ 203 (264)
+|||+||+.|.++..++... +..+|+++|.++.+.+.+.+....+ .|+++++..+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~-~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKG-AEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhC-CCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeC
Confidence 48999999999999999874 5669999999998876666654433 368888777654
No 221
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=97.50 E-value=0.00082 Score=60.44 Aligned_cols=81 Identities=25% Similarity=0.260 Sum_probs=61.9
Q ss_pred CCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc------CCCeEEEEcCCCCchhhcccCCC
Q 024665 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK------RTNVIPIIEDARHPAKYRMLVGM 213 (264)
Q Consensus 140 ~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~------~~nV~~i~~D~~~~~~~~~~~~~ 213 (264)
+..| .+||-+|-|-|.++-.++++- +-.+++.||+++.+++-..+.... .+++++++.|+.++... ...+
T Consensus 74 h~~p-k~VLiiGgGdG~tlRevlkh~-~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~--~~~~ 149 (282)
T COG0421 74 HPNP-KRVLIIGGGDGGTLREVLKHL-PVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRD--CEEK 149 (282)
T ss_pred CCCC-CeEEEECCCccHHHHHHHhcC-CcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHh--CCCc
Confidence 4555 699999999999999999884 356899999999775544443321 24799999999886642 3348
Q ss_pred ccEEEEcCCCc
Q 024665 214 VDVIFSDVAQP 224 (264)
Q Consensus 214 fD~V~~d~p~~ 224 (264)
||+|++|...|
T Consensus 150 fDvIi~D~tdp 160 (282)
T COG0421 150 FDVIIVDSTDP 160 (282)
T ss_pred CCEEEEcCCCC
Confidence 99999998865
No 222
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=97.47 E-value=0.0001 Score=55.92 Aligned_cols=80 Identities=21% Similarity=0.260 Sum_probs=28.7
Q ss_pred EEEcccCChHHHHHHHHhCCCC--EEEEEeCChH--HHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEcCCC
Q 024665 148 LYLGAASGTTVSHVSDIVGPNG--VVYAVEFSHR--SGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQ 223 (264)
Q Consensus 148 LDlG~G~G~~s~~la~~~~~~g--~V~avD~s~~--~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p~ 223 (264)
||+|+..|..++.+++.+.+.. +++++|..+. ..++.++......+++++++|..+..+. ....++|+|+.|...
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~-~~~~~~dli~iDg~H 79 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPS-LPDGPIDLIFIDGDH 79 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHH-HHH--EEEEEEES--
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHH-cCCCCEEEEEECCCC
Confidence 6899999999999998887665 7999999973 2334444444556899999999775432 123799999999874
Q ss_pred chHHH
Q 024665 224 PDQVC 228 (264)
Q Consensus 224 ~~~~~ 228 (264)
..+..
T Consensus 80 ~~~~~ 84 (106)
T PF13578_consen 80 SYEAV 84 (106)
T ss_dssp -HHHH
T ss_pred CHHHH
Confidence 43333
No 223
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=97.46 E-value=0.00092 Score=59.04 Aligned_cols=83 Identities=22% Similarity=0.157 Sum_probs=55.1
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEE-cC
Q 024665 143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFS-DV 221 (264)
Q Consensus 143 ~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~-d~ 221 (264)
...++||||||-|..|..|+..+. +|||.|+|+.|...+.+ + +.+++..| +.. ....+||+|.| |+
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~---~v~aTE~S~~Mr~rL~~----k-g~~vl~~~--~w~---~~~~~fDvIscLNv 160 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFK---EVYATEASPPMRWRLSK----K-GFTVLDID--DWQ---QTDFKFDVISCLNV 160 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcc---eEEeecCCHHHHHHHHh----C-CCeEEehh--hhh---ccCCceEEEeehhh
Confidence 356899999999999999999986 79999999988433322 2 33333322 221 12358999985 33
Q ss_pred C----CchHHHHHHHHHhCCC
Q 024665 222 A----QPDQVCFLCLILFQPI 238 (264)
Q Consensus 222 p----~~~~~~~~~~~~l~~~ 238 (264)
- .|........+++.|.
T Consensus 161 LDRc~~P~~LL~~i~~~l~p~ 181 (265)
T PF05219_consen 161 LDRCDRPLTLLRDIRRALKPN 181 (265)
T ss_pred hhccCCHHHHHHHHHHHhCCC
Confidence 3 4555555555666554
No 224
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.45 E-value=0.0021 Score=54.20 Aligned_cols=78 Identities=22% Similarity=0.198 Sum_probs=55.6
Q ss_pred EEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHH---HHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEcCC
Q 024665 146 RVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRS---GRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVA 222 (264)
Q Consensus 146 ~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~---~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p 222 (264)
+|+|+|+|.|.=++.+|-. .|..+|+-+|.+.+- ++..+.... ..||++++..+.+. .....||+|++-+-
T Consensus 51 ~~lDiGSGaGfPGipLaI~-~p~~~~~LvEs~~KK~~FL~~~~~~L~-L~nv~v~~~R~E~~----~~~~~fd~v~aRAv 124 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIA-RPDLQVTLVESVGKKVAFLKEVVRELG-LSNVEVINGRAEEP----EYRESFDVVTARAV 124 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH--TTSEEEEEESSHHHHHHHHHHHHHHT--SSEEEEES-HHHT----TTTT-EEEEEEESS
T ss_pred eEEecCCCCCChhHHHHHh-CCCCcEEEEeCCchHHHHHHHHHHHhC-CCCEEEEEeeeccc----ccCCCccEEEeehh
Confidence 8999999999999999966 478899999999533 333333222 24899999999882 23479999999887
Q ss_pred CchHHHH
Q 024665 223 QPDQVCF 229 (264)
Q Consensus 223 ~~~~~~~ 229 (264)
.+-....
T Consensus 125 ~~l~~l~ 131 (184)
T PF02527_consen 125 APLDKLL 131 (184)
T ss_dssp SSHHHHH
T ss_pred cCHHHHH
Confidence 6544333
No 225
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=97.40 E-value=0.001 Score=58.12 Aligned_cols=81 Identities=23% Similarity=0.306 Sum_probs=46.8
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC-CCeEEEEcCCCCchhhcccCCCccEEEEc
Q 024665 142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRMLVGMVDVIFSD 220 (264)
Q Consensus 142 ~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~-~nV~~i~~D~~~~~~~~~~~~~fD~V~~d 220 (264)
-.|.+||=|| -.-+++..+.+.+...+|+-+|++++++....+.+.+. .+|+.++.|++++.+. .+.++||+++.|
T Consensus 43 L~gk~il~lG--DDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~-~~~~~fD~f~TD 119 (243)
T PF01861_consen 43 LEGKRILFLG--DDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPE-ELRGKFDVFFTD 119 (243)
T ss_dssp STT-EEEEES---TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS---T-TTSS-BSEEEE-
T ss_pred ccCCEEEEEc--CCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccCCH-HHhcCCCEEEeC
Confidence 3678898776 56666655556666779999999999987766666553 3799999999997653 456899999999
Q ss_pred CCCch
Q 024665 221 VAQPD 225 (264)
Q Consensus 221 ~p~~~ 225 (264)
||...
T Consensus 120 PPyT~ 124 (243)
T PF01861_consen 120 PPYTP 124 (243)
T ss_dssp --SSH
T ss_pred CCCCH
Confidence 99433
No 226
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=97.39 E-value=0.0024 Score=55.71 Aligned_cols=70 Identities=19% Similarity=0.077 Sum_probs=51.5
Q ss_pred CCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEE
Q 024665 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFS 219 (264)
Q Consensus 140 ~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~ 219 (264)
.+.+..+|||||+|+|.++..+++.. |..+++.+|+ |.++ +.+....+|+++.+|+.+.. .. +|+|++
T Consensus 97 d~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~v~----~~~~~~~rv~~~~gd~f~~~-----P~-~D~~~l 164 (241)
T PF00891_consen 97 DFSGFKTVVDVGGGSGHFAIALARAY-PNLRATVFDL-PEVI----EQAKEADRVEFVPGDFFDPL-----PV-ADVYLL 164 (241)
T ss_dssp TTTTSSEEEEET-TTSHHHHHHHHHS-TTSEEEEEE--HHHH----CCHHHTTTEEEEES-TTTCC-----SS-ESEEEE
T ss_pred cccCccEEEeccCcchHHHHHHHHHC-CCCcceeecc-Hhhh----hccccccccccccccHHhhh-----cc-ccceee
Confidence 46777899999999999999999885 7889999999 4343 22222669999999998533 23 999997
Q ss_pred cC
Q 024665 220 DV 221 (264)
Q Consensus 220 d~ 221 (264)
.-
T Consensus 165 ~~ 166 (241)
T PF00891_consen 165 RH 166 (241)
T ss_dssp ES
T ss_pred eh
Confidence 43
No 227
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.38 E-value=0.0011 Score=53.22 Aligned_cols=75 Identities=17% Similarity=0.190 Sum_probs=50.3
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHh---CCCCEEEEEeCChHHHHHHHHHhhc-----CCCeEEEEcCCCCchhhcccCC
Q 024665 141 IKPGARVLYLGAASGTTVSHVSDIV---GPNGVVYAVEFSHRSGRDLVNMAKK-----RTNVIPIIEDARHPAKYRMLVG 212 (264)
Q Consensus 141 l~~g~~VLDlG~G~G~~s~~la~~~---~~~g~V~avD~s~~~~~~l~~~a~~-----~~nV~~i~~D~~~~~~~~~~~~ 212 (264)
..+...|+|+|||.|+++..|+..+ .+.-+|++||.++...+...+.+.+ ..+++++..+..+.. ...
T Consensus 23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 98 (141)
T PF13679_consen 23 SKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADES----SSD 98 (141)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhc----ccC
Confidence 4677899999999999999999943 3567999999997664444443332 125666666554322 124
Q ss_pred CccEEEE
Q 024665 213 MVDVIFS 219 (264)
Q Consensus 213 ~fD~V~~ 219 (264)
..++++.
T Consensus 99 ~~~~~vg 105 (141)
T PF13679_consen 99 PPDILVG 105 (141)
T ss_pred CCeEEEE
Confidence 5566664
No 228
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=97.34 E-value=0.00065 Score=61.59 Aligned_cols=6 Identities=50% Similarity=1.182 Sum_probs=2.4
Q ss_pred CCCCCC
Q 024665 60 GGGMKG 65 (264)
Q Consensus 60 ~~~~~~ 65 (264)
+|++.+
T Consensus 457 rg~y~~ 462 (465)
T KOG3973|consen 457 RGGYRG 462 (465)
T ss_pred CcccCC
Confidence 344433
No 229
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=97.32 E-value=0.0014 Score=58.74 Aligned_cols=71 Identities=18% Similarity=0.123 Sum_probs=51.5
Q ss_pred EEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEcCCC
Q 024665 146 RVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQ 223 (264)
Q Consensus 146 ~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p~ 223 (264)
+||||+||.|.+++-+.+. + -..|+++|+++.+.+.... |. ++ .+++.|+.+..... ....+|+|+.++|+
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~-G-~~~v~a~e~~~~a~~~~~~-N~--~~-~~~~~Di~~~~~~~-~~~~~D~l~~gpPC 72 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKA-G-FEIVAANEIDKSAAETYEA-NF--PN-KLIEGDITKIDEKD-FIPDIDLLTGGFPC 72 (275)
T ss_pred cEEEEccCcchHHHHHHHc-C-CEEEEEEeCCHHHHHHHHH-hC--CC-CCccCccccCchhh-cCCCCCEEEeCCCC
Confidence 6999999999999888765 2 3478999999877544333 22 12 27788988876421 14579999999994
No 230
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=97.31 E-value=0.00042 Score=62.93 Aligned_cols=94 Identities=17% Similarity=0.141 Sum_probs=61.4
Q ss_pred chHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhh-cCCCeEEEEcCCCC
Q 024665 125 RSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAK-KRTNVIPIIEDARH 203 (264)
Q Consensus 125 ~s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~-~~~nV~~i~~D~~~ 203 (264)
.+-|..+++..|. ++|+..+||.-.|.|..|..+++...+ ++|+|+|.++.+++...+... ...++++++.+..+
T Consensus 5 ~PVll~Evl~~L~---~~~~g~~vD~T~G~GGHS~aiL~~~~~-~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~ 80 (310)
T PF01795_consen 5 IPVLLKEVLEALN---PKPGGIYVDCTFGGGGHSKAILEKLPN-GRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFSN 80 (310)
T ss_dssp --TTHHHHHHHHT-----TT-EEEETT-TTSHHHHHHHHT-TT--EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGG
T ss_pred ecccHHHHHHhhC---cCCCceEEeecCCcHHHHHHHHHhCCC-CeEEEecCCHHHHHHHHHHHhhccceEEEEeccHHH
Confidence 3456666766666 899999999999999999999998765 999999999977433322221 12489999999988
Q ss_pred chhhcc---cCCCccEEEEcCC
Q 024665 204 PAKYRM---LVGMVDVIFSDVA 222 (264)
Q Consensus 204 ~~~~~~---~~~~fD~V~~d~p 222 (264)
+..+-. ....+|.|++|.-
T Consensus 81 l~~~l~~~~~~~~~dgiL~DLG 102 (310)
T PF01795_consen 81 LDEYLKELNGINKVDGILFDLG 102 (310)
T ss_dssp HHHHHHHTTTTS-EEEEEEE-S
T ss_pred HHHHHHHccCCCccCEEEEccc
Confidence 765421 2358999999966
No 231
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=97.29 E-value=0.003 Score=56.67 Aligned_cols=78 Identities=12% Similarity=-0.010 Sum_probs=58.0
Q ss_pred CEEEEEcccCChHHHHHHHHhCC-CCEEEEEeCChHHHHHHHHHhhc---CCCeEEEEcCCCCchhhcccCCCccEEEEc
Q 024665 145 ARVLYLGAASGTTVSHVSDIVGP-NGVVYAVEFSHRSGRDLVNMAKK---RTNVIPIIEDARHPAKYRMLVGMVDVIFSD 220 (264)
Q Consensus 145 ~~VLDlG~G~G~~s~~la~~~~~-~g~V~avD~s~~~~~~l~~~a~~---~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d 220 (264)
-+|||++||.|...+.+...... .-.|.-.|+|+..++.-.++... ..-++|.++|+.+...+..+....|++++.
T Consensus 137 vrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~iVs 216 (311)
T PF12147_consen 137 VRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLAIVS 216 (311)
T ss_pred eEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEEEEe
Confidence 48999999999999988877643 25899999997654443333333 324599999999988776666778988865
Q ss_pred CC
Q 024665 221 VA 222 (264)
Q Consensus 221 ~p 222 (264)
-.
T Consensus 217 GL 218 (311)
T PF12147_consen 217 GL 218 (311)
T ss_pred cc
Confidence 44
No 232
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=97.23 E-value=0.0017 Score=58.96 Aligned_cols=110 Identities=14% Similarity=0.142 Sum_probs=69.3
Q ss_pred CCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhh----cCC----CeEEEEcCCCCchhhcc--
Q 024665 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAK----KRT----NVIPIIEDARHPAKYRM-- 209 (264)
Q Consensus 140 ~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~----~~~----nV~~i~~D~~~~~~~~~-- 209 (264)
..++++.|||||||-|...+-.-.. .-+.++++||++-++.++..... ... .+.++.+|.........
T Consensus 114 y~~~~~~~~~LgCGKGGDLlKw~kA--gI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e 191 (389)
T KOG1975|consen 114 YTKRGDDVLDLGCGKGGDLLKWDKA--GIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLE 191 (389)
T ss_pred HhccccccceeccCCcccHhHhhhh--cccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhcc
Confidence 3688999999999999988877644 35689999999766544433221 111 57899999876432111
Q ss_pred -cCCCccEEEEcCC------CchHHHHHH---HHHhCCC-----cHHHHHHHHHHhh
Q 024665 210 -LVGMVDVIFSDVA------QPDQVCFLC---LILFQPI-----VINNLQSVNNETK 251 (264)
Q Consensus 210 -~~~~fD~V~~d~p------~~~~~~~~~---~~~l~~~-----~~~~l~~~~~~Lk 251 (264)
...+||+|-|-.. ...++++.. ...|+|+ ++.....+++.|+
T Consensus 192 ~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd~Ii~rlr 248 (389)
T KOG1975|consen 192 FKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSDVIIKRLR 248 (389)
T ss_pred CCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHHHHHHHHH
Confidence 1234999987655 233444443 3445666 5555555555555
No 233
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.20 E-value=0.0053 Score=53.04 Aligned_cols=75 Identities=23% Similarity=0.143 Sum_probs=55.5
Q ss_pred CCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc--CCCeEEEEcCCCCchhhcccCCC-ccEEEEc
Q 024665 144 GARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK--RTNVIPIIEDARHPAKYRMLVGM-VDVIFSD 220 (264)
Q Consensus 144 g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~--~~nV~~i~~D~~~~~~~~~~~~~-fD~V~~d 220 (264)
..+|+|+|+|.|.=++.+| ++.|+.+|+-+|...+-+.-+...... .+|++++++.+.++... .. ||+|++-
T Consensus 68 ~~~~~DIGSGaGfPGipLA-I~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~----~~~~D~vtsR 142 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLA-IAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQE----KKQYDVVTSR 142 (215)
T ss_pred CCEEEEeCCCCCCchhhHH-HhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccc----cccCcEEEee
Confidence 5899999999999999999 556888899999984332232222222 34899999999887631 23 9999987
Q ss_pred CCC
Q 024665 221 VAQ 223 (264)
Q Consensus 221 ~p~ 223 (264)
+-.
T Consensus 143 Ava 145 (215)
T COG0357 143 AVA 145 (215)
T ss_pred hcc
Confidence 663
No 234
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=97.20 E-value=0.0034 Score=56.56 Aligned_cols=95 Identities=15% Similarity=0.090 Sum_probs=75.3
Q ss_pred chHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc-CCCeEEEEcCCCC
Q 024665 125 RSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK-RTNVIPIIEDARH 203 (264)
Q Consensus 125 ~s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~-~~nV~~i~~D~~~ 203 (264)
.+-|..+++..|. ++|+...||.--|-|..|..+.+...+.++++++|.++.+++...+.... ..++++++....+
T Consensus 8 ipVLl~E~i~~L~---~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~ 84 (314)
T COG0275 8 IPVLLNEVVELLA---PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFAN 84 (314)
T ss_pred cchHHHHHHHhcc---cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHHH
Confidence 4667777776666 99999999999999999999999988888999999999886555554433 3489999999887
Q ss_pred chhh--cccCCCccEEEEcCC
Q 024665 204 PAKY--RMLVGMVDVIFSDVA 222 (264)
Q Consensus 204 ~~~~--~~~~~~fD~V~~d~p 222 (264)
+..+ .....++|-|++|.-
T Consensus 85 l~~~l~~~~i~~vDGiL~DLG 105 (314)
T COG0275 85 LAEALKELGIGKVDGILLDLG 105 (314)
T ss_pred HHHHHHhcCCCceeEEEEecc
Confidence 6543 122458999999865
No 235
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=97.10 E-value=0.00098 Score=56.44 Aligned_cols=71 Identities=18% Similarity=0.214 Sum_probs=53.6
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCC--CeEEEEcCCCCchhhcccCCCccEEE
Q 024665 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRT--NVIPIIEDARHPAKYRMLVGMVDVIF 218 (264)
Q Consensus 141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~--nV~~i~~D~~~~~~~~~~~~~fD~V~ 218 (264)
.-.+.+|||+|+|+|..++..+.. .+..|++.|+.+... +++..|.+.. +|.++..|... . +..||+|+
T Consensus 77 tVrgkrVLd~gagsgLvaIAaa~a--GA~~v~a~d~~P~~~-~ai~lNa~angv~i~~~~~d~~g-~-----~~~~Dl~L 147 (218)
T COG3897 77 TVRGKRVLDLGAGSGLVAIAAARA--GAAEVVAADIDPWLE-QAIRLNAAANGVSILFTHADLIG-S-----PPAFDLLL 147 (218)
T ss_pred ccccceeeecccccChHHHHHHHh--hhHHHHhcCCChHHH-HHhhcchhhccceeEEeeccccC-C-----CcceeEEE
Confidence 446889999999999999999877 466899999996553 4455554332 78888888765 2 36899998
Q ss_pred Ec
Q 024665 219 SD 220 (264)
Q Consensus 219 ~d 220 (264)
+.
T Consensus 148 ag 149 (218)
T COG3897 148 AG 149 (218)
T ss_pred ee
Confidence 63
No 236
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=97.06 E-value=0.0022 Score=54.86 Aligned_cols=75 Identities=21% Similarity=0.295 Sum_probs=49.5
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHH---HHHHHHHhhcCCCe-EEEEcCCCCch-hhc----ccCCC
Q 024665 143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRS---GRDLVNMAKKRTNV-IPIIEDARHPA-KYR----MLVGM 213 (264)
Q Consensus 143 ~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~---~~~l~~~a~~~~nV-~~i~~D~~~~~-~~~----~~~~~ 213 (264)
.+.+||||+||||--+.++|..+ |.-.-.-.|.++.. ++.-+..+. .+|+ .++..|+.+.. +.. .....
T Consensus 25 ~~~~vLEiaSGtGqHa~~FA~~l-P~l~WqPSD~~~~~~~sI~a~~~~~~-~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~ 102 (204)
T PF06080_consen 25 SGTRVLEIASGTGQHAVYFAQAL-PHLTWQPSDPDDNLRPSIRAWIAEAG-LPNVRPPLALDVSAPPWPWELPAPLSPES 102 (204)
T ss_pred cCceEEEEcCCccHHHHHHHHHC-CCCEEcCCCCChHHHhhHHHHHHhcC-CcccCCCeEeecCCCCCccccccccCCCC
Confidence 33469999999999999999997 56677777887543 333233332 2343 56788887752 221 12358
Q ss_pred ccEEEE
Q 024665 214 VDVIFS 219 (264)
Q Consensus 214 fD~V~~ 219 (264)
||+|++
T Consensus 103 ~D~i~~ 108 (204)
T PF06080_consen 103 FDAIFC 108 (204)
T ss_pred cceeee
Confidence 999996
No 237
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=97.05 E-value=0.00092 Score=56.58 Aligned_cols=76 Identities=29% Similarity=0.265 Sum_probs=50.8
Q ss_pred CCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHH------HHHHHHHh--hcCCCeEEEEcCCCCchhhcccC
Q 024665 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRS------GRDLVNMA--KKRTNVIPIIEDARHPAKYRMLV 211 (264)
Q Consensus 140 ~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~------~~~l~~~a--~~~~nV~~i~~D~~~~~~~~~~~ 211 (264)
.++|+++|+|+-.|.|+||..++..+++++.||++--.+-. ...+...+ ....|++++-.+...+. ..
T Consensus 45 Glkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~----~p 120 (238)
T COG4798 45 GLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALG----AP 120 (238)
T ss_pred ccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccC----CC
Confidence 49999999999999999999999999999999998543210 01111111 12237777666654433 23
Q ss_pred CCccEEEE
Q 024665 212 GMVDVIFS 219 (264)
Q Consensus 212 ~~fD~V~~ 219 (264)
+..|+++.
T Consensus 121 q~~d~~~~ 128 (238)
T COG4798 121 QKLDLVPT 128 (238)
T ss_pred Cccccccc
Confidence 45666654
No 238
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=96.88 E-value=0.00061 Score=62.20 Aligned_cols=79 Identities=18% Similarity=0.188 Sum_probs=59.2
Q ss_pred CCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHH------HHHHHhhcC----C-CeEEEEcCCCCchhhc
Q 024665 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGR------DLVNMAKKR----T-NVIPIIEDARHPAKYR 208 (264)
Q Consensus 140 ~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~------~l~~~a~~~----~-nV~~i~~D~~~~~~~~ 208 (264)
-++||+.|+|-..|||++...+|.. .+.|++.||+-++++ ..+..|-+. + -+.++.+|..+++-.
T Consensus 205 mv~pGdivyDPFVGTGslLvsaa~F---Ga~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~r- 280 (421)
T KOG2671|consen 205 MVKPGDIVYDPFVGTGSLLVSAAHF---GAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLR- 280 (421)
T ss_pred ccCCCCEEecCccccCceeeehhhh---cceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchh-
Confidence 4899999999999999999999976 358999999966654 122222211 1 477888998886532
Q ss_pred ccCCCccEEEEcCCC
Q 024665 209 MLVGMVDVIFSDVAQ 223 (264)
Q Consensus 209 ~~~~~fD~V~~d~p~ 223 (264)
....||+|+||||.
T Consensus 281 -sn~~fDaIvcDPPY 294 (421)
T KOG2671|consen 281 -SNLKFDAIVCDPPY 294 (421)
T ss_pred -hcceeeEEEeCCCc
Confidence 24589999999993
No 239
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=96.88 E-value=0.0037 Score=60.54 Aligned_cols=82 Identities=13% Similarity=0.111 Sum_probs=56.5
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCC---CCEEEEEeCChHHHHHHHHHhhcCC----CeEEEEcCCCCchhh--cccC
Q 024665 141 IKPGARVLYLGAASGTTVSHVSDIVGP---NGVVYAVEFSHRSGRDLVNMAKKRT----NVIPIIEDARHPAKY--RMLV 211 (264)
Q Consensus 141 l~~g~~VLDlG~G~G~~s~~la~~~~~---~g~V~avD~s~~~~~~l~~~a~~~~----nV~~i~~D~~~~~~~--~~~~ 211 (264)
+++..+|+|-+||||.+.+..++.+.. ...+|+.|+++... .+..++.... ++...++|...-+.. ....
T Consensus 184 ~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~-~l~~mN~~lhgi~~~~~i~~~dtl~~~~~~~~~~~ 262 (489)
T COG0286 184 PEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTY-RLAKMNLILHGIEGDANIRHGDTLSNPKHDDKDDK 262 (489)
T ss_pred CCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHH-HHHHHHHHHhCCCccccccccccccCCcccccCCc
Confidence 578889999999999999999988863 36799999996553 3334443322 345555655443322 1133
Q ss_pred CCccEEEEcCCC
Q 024665 212 GMVDVIFSDVAQ 223 (264)
Q Consensus 212 ~~fD~V~~d~p~ 223 (264)
..||+|++|||.
T Consensus 263 ~~~D~viaNPPf 274 (489)
T COG0286 263 GKFDFVIANPPF 274 (489)
T ss_pred cceeEEEeCCCC
Confidence 579999999994
No 240
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=96.84 E-value=0.0061 Score=55.79 Aligned_cols=65 Identities=12% Similarity=0.133 Sum_probs=50.2
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCC---CCEEEEEeCChHHHHHHHHHhh-cC-C--CeEEEEcCCCCch
Q 024665 141 IKPGARVLYLGAASGTTVSHVSDIVGP---NGVVYAVEFSHRSGRDLVNMAK-KR-T--NVIPIIEDARHPA 205 (264)
Q Consensus 141 l~~g~~VLDlG~G~G~~s~~la~~~~~---~g~V~avD~s~~~~~~l~~~a~-~~-~--nV~~i~~D~~~~~ 205 (264)
+.++..|+|+|||++.++..|.+.+.+ ....++||+|..+++...+... .. + .|..+++|..+..
T Consensus 74 i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l 145 (319)
T TIGR03439 74 IPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGL 145 (319)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHH
Confidence 567889999999999999988877743 3469999999888777666655 22 3 4566999998754
No 241
>PRK00536 speE spermidine synthase; Provisional
Probab=96.77 E-value=0.036 Score=49.41 Aligned_cols=86 Identities=9% Similarity=-0.041 Sum_probs=60.7
Q ss_pred CCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHH------hhcCCCeEEEEcCCCCchhhcccCCCccEE
Q 024665 144 GARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNM------AKKRTNVIPIIEDARHPAKYRMLVGMVDVI 217 (264)
Q Consensus 144 g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~------a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V 217 (264)
-.+||=+|-|-|...-.+++. +. +|+-||+++++++-..+. +-..++++++.. +.+ ...++||+|
T Consensus 73 pk~VLIiGGGDGg~~REvLkh--~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~-----~~~~~fDVI 143 (262)
T PRK00536 73 LKEVLIVDGFDLELAHQLFKY--DT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLD-----LDIKKYDLI 143 (262)
T ss_pred CCeEEEEcCCchHHHHHHHCc--CC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhh-----ccCCcCCEE
Confidence 379999999999999999988 44 999999998776444432 223357777762 111 112689999
Q ss_pred EEcCCCchHHHHHHHHHhCCC
Q 024665 218 FSDVAQPDQVCFLCLILFQPI 238 (264)
Q Consensus 218 ~~d~p~~~~~~~~~~~~l~~~ 238 (264)
++|...+........++|.+.
T Consensus 144 IvDs~~~~~fy~~~~~~L~~~ 164 (262)
T PRK00536 144 ICLQEPDIHKIDGLKRMLKED 164 (262)
T ss_pred EEcCCCChHHHHHHHHhcCCC
Confidence 999665545445566777776
No 242
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=96.74 E-value=0.008 Score=54.41 Aligned_cols=78 Identities=10% Similarity=0.003 Sum_probs=40.8
Q ss_pred CCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHH---HHHHHHh-hcCCCeEEEEcCCCC-ch-hhcccCCCccEE
Q 024665 144 GARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSG---RDLVNMA-KKRTNVIPIIEDARH-PA-KYRMLVGMVDVI 217 (264)
Q Consensus 144 g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~---~~l~~~a-~~~~nV~~i~~D~~~-~~-~~~~~~~~fD~V 217 (264)
.-++||+|||.-.+--.|+.... .-+++|.|+++.++ +++++.| ....+|+++...-.. +. ......+.||+.
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~-~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dft 181 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLY-GWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFT 181 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEE
T ss_pred ceEeecCCccHHHHHHHHhhhhc-CCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEE
Confidence 45899999998876544444433 56899999998664 4445555 444578887664322 11 111123589999
Q ss_pred EEcCC
Q 024665 218 FSDVA 222 (264)
Q Consensus 218 ~~d~p 222 (264)
+||||
T Consensus 182 mCNPP 186 (299)
T PF05971_consen 182 MCNPP 186 (299)
T ss_dssp EE---
T ss_pred ecCCc
Confidence 99999
No 243
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=96.67 E-value=0.0014 Score=61.27 Aligned_cols=77 Identities=23% Similarity=0.173 Sum_probs=59.8
Q ss_pred eCCcchHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC---C-CeEE
Q 024665 121 WNPFRSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR---T-NVIP 196 (264)
Q Consensus 121 ~~p~~s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~---~-nV~~ 196 (264)
|+++-+..-..+.. ..+|++.|.|++||.|-+++.++.. .+.|||.|.++++++-+....+++ + +|+.
T Consensus 232 WnsRL~~Eherlsg-----~fk~gevv~D~FaGvGPfa~Pa~kK---~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei 303 (495)
T KOG2078|consen 232 WNSRLSHEHERLSG-----LFKPGEVVCDVFAGVGPFALPAAKK---GCRVYANDLNPESIKWLKANIKLNKVDPSAIEI 303 (495)
T ss_pred eeccchhHHHHHhh-----ccCCcchhhhhhcCcCccccchhhc---CcEEEecCCCHHHHHHHHHhccccccchhheee
Confidence 87554444444432 3689999999999999999999976 489999999999987776665544 2 6999
Q ss_pred EEcCCCCch
Q 024665 197 IIEDARHPA 205 (264)
Q Consensus 197 i~~D~~~~~ 205 (264)
...|+.++.
T Consensus 304 ~Nmda~~Fl 312 (495)
T KOG2078|consen 304 FNMDAKDFL 312 (495)
T ss_pred ecccHHHHh
Confidence 999997765
No 244
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=96.67 E-value=0.0015 Score=58.57 Aligned_cols=91 Identities=18% Similarity=0.083 Sum_probs=61.0
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCC---CeEEEEcCCCCchhhcccCCCccEEEE
Q 024665 143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRT---NVIPIIEDARHPAKYRMLVGMVDVIFS 219 (264)
Q Consensus 143 ~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~---nV~~i~~D~~~~~~~~~~~~~fD~V~~ 219 (264)
.++.|+||.||.|++|+...-.. .+..|+|+|.+|.+++.+++.+..+. ...++.+|-+.+. +...+|.|.+
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~a-gAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~----~~~~AdrVnL 268 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTA-GAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPK----PRLRADRVNL 268 (351)
T ss_pred ccchhhhhhcccceEEeehhhcc-CccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccC----ccccchheee
Confidence 45899999999999999554343 46789999999988877766665442 3455667766643 3467898887
Q ss_pred cCC-CchHHHHHHHHHhCCC
Q 024665 220 DVA-QPDQVCFLCLILFQPI 238 (264)
Q Consensus 220 d~p-~~~~~~~~~~~~l~~~ 238 (264)
-.. ...+.-..+..+++|.
T Consensus 269 GLlPSse~~W~~A~k~Lk~e 288 (351)
T KOG1227|consen 269 GLLPSSEQGWPTAIKALKPE 288 (351)
T ss_pred ccccccccchHHHHHHhhhc
Confidence 654 3333333444444443
No 245
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=96.62 E-value=0.009 Score=53.92 Aligned_cols=73 Identities=18% Similarity=0.154 Sum_probs=48.0
Q ss_pred CEEEEEcccCCh----HHHHHHHHhCC---CCEEEEEeCChHHHHHHHHH------------------------------
Q 024665 145 ARVLYLGAASGT----TVSHVSDIVGP---NGVVYAVEFSHRSGRDLVNM------------------------------ 187 (264)
Q Consensus 145 ~~VLDlG~G~G~----~s~~la~~~~~---~g~V~avD~s~~~~~~l~~~------------------------------ 187 (264)
-+||..||+||- +++.+.+.... .-+|+|+|+|+.+++.+.+-
T Consensus 117 irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~ 196 (287)
T PRK10611 117 YRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGLV 196 (287)
T ss_pred EEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCceE
Confidence 589999999997 44444443321 35799999998775544321
Q ss_pred ---hhcCCCeEEEEcCCCCchhhcccCCCccEEEE
Q 024665 188 ---AKKRTNVIPIIEDARHPAKYRMLVGMVDVIFS 219 (264)
Q Consensus 188 ---a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~ 219 (264)
...+..|+|.+.|+.+.+ + ...+.||+|+|
T Consensus 197 ~v~~~lr~~V~F~~~NL~~~~-~-~~~~~fD~I~c 229 (287)
T PRK10611 197 RVRQELANYVDFQQLNLLAKQ-W-AVPGPFDAIFC 229 (287)
T ss_pred EEChHHHccCEEEcccCCCCC-C-ccCCCcceeeH
Confidence 001136888899987743 1 12468999998
No 246
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=96.56 E-value=0.012 Score=52.96 Aligned_cols=69 Identities=19% Similarity=0.126 Sum_probs=48.3
Q ss_pred EEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEcCC
Q 024665 146 RVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVA 222 (264)
Q Consensus 146 ~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p 222 (264)
+|+||+||.|.+++-+.+. + --.|.|+|+++.+.+....+.. .+++.|+++........ .+|+++.-+|
T Consensus 2 ~~~dlFsG~Gg~~~g~~~a-g-~~~~~a~e~~~~a~~~y~~N~~-----~~~~~Di~~~~~~~l~~-~~D~l~ggpP 70 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQA-G-FEVVWAVEIDPDACETYKANFP-----EVICGDITEIDPSDLPK-DVDLLIGGPP 70 (335)
T ss_dssp EEEEET-TTTHHHHHHHHT-T-EEEEEEEESSHHHHHHHHHHHT-----EEEESHGGGCHHHHHHH-T-SEEEEE--
T ss_pred cEEEEccCccHHHHHHHhc-C-cEEEEEeecCHHHHHhhhhccc-----ccccccccccccccccc-cceEEEeccC
Confidence 7999999999999988865 2 2379999999876544333222 89999999876542222 6999999999
No 247
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=96.53 E-value=0.0038 Score=53.52 Aligned_cols=81 Identities=17% Similarity=0.288 Sum_probs=45.3
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHh---CCCCEEEEEeCChHH-HHHHHHHhhcCCCeEEEEcCCCCchhhccc---C--
Q 024665 141 IKPGARVLYLGAASGTTVSHVSDIV---GPNGVVYAVEFSHRS-GRDLVNMAKKRTNVIPIIEDARHPAKYRML---V-- 211 (264)
Q Consensus 141 l~~g~~VLDlG~G~G~~s~~la~~~---~~~g~V~avD~s~~~-~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~---~-- 211 (264)
++| +.|+++|...|..++.+|+.+ ++.++|++||++.+. .+..++.....++|+++++|..++...... .
T Consensus 31 ~kP-d~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~ 109 (206)
T PF04989_consen 31 LKP-DLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASP 109 (206)
T ss_dssp H---SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGSS---
T ss_pred hCC-CeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHHhhcc
Confidence 566 589999999999888777544 467899999997322 112222222336999999999987643221 1
Q ss_pred CCccEEEEcCC
Q 024665 212 GMVDVIFSDVA 222 (264)
Q Consensus 212 ~~fD~V~~d~p 222 (264)
....+|+.|..
T Consensus 110 ~~~vlVilDs~ 120 (206)
T PF04989_consen 110 PHPVLVILDSS 120 (206)
T ss_dssp -SSEEEEESS-
T ss_pred CCceEEEECCC
Confidence 24558888877
No 248
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=96.50 E-value=0.0085 Score=49.14 Aligned_cols=64 Identities=11% Similarity=-0.061 Sum_probs=43.0
Q ss_pred EEEeCChHHHHHHHHHhhc-----CCCeEEEEcCCCCchhhcccCCCccEEEEcCC-----CchHHHHHHHHHhCCC
Q 024665 172 YAVEFSHRSGRDLVNMAKK-----RTNVIPIIEDARHPAKYRMLVGMVDVIFSDVA-----QPDQVCFLCLILFQPI 238 (264)
Q Consensus 172 ~avD~s~~~~~~l~~~a~~-----~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p-----~~~~~~~~~~~~l~~~ 238 (264)
+++|+|+.|++...+.... ..||+++++|+.+++ ...++||+|++... .+.+......+.++|+
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp---~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpG 74 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLP---FDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPG 74 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCC---CCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcC
Confidence 4799999997665443321 137999999998865 24568999987643 3444555555566665
No 249
>PTZ00146 fibrillarin; Provisional
Probab=96.47 E-value=0.007 Score=54.64 Aligned_cols=13 Identities=31% Similarity=0.343 Sum_probs=7.4
Q ss_pred CeEEEEcCCCCch
Q 024665 193 NVIPIIEDARHPA 205 (264)
Q Consensus 193 nV~~i~~D~~~~~ 205 (264)
.+.++..|+.++.
T Consensus 202 ~vDvV~~Dva~pd 214 (293)
T PTZ00146 202 MVDVIFADVAQPD 214 (293)
T ss_pred CCCEEEEeCCCcc
Confidence 4566666665443
No 250
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=96.45 E-value=0.015 Score=52.10 Aligned_cols=39 Identities=18% Similarity=0.089 Sum_probs=33.4
Q ss_pred CEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHH
Q 024665 145 ARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRD 183 (264)
Q Consensus 145 ~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~ 183 (264)
.+|||+|||+|+-+..+.+.+....++++||.|+.|.+.
T Consensus 35 ~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l 73 (274)
T PF09243_consen 35 RSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLEL 73 (274)
T ss_pred ceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHH
Confidence 589999999999999998888756689999999877543
No 251
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=96.30 E-value=0.0084 Score=48.30 Aligned_cols=93 Identities=17% Similarity=0.226 Sum_probs=53.6
Q ss_pred EEEEEeCChHHHHHHHHHhhc---CCCeEEEEcCCCCchhhcccCC-CccEEEEcCC-----------Cc---hHHHHHH
Q 024665 170 VVYAVEFSHRSGRDLVNMAKK---RTNVIPIIEDARHPAKYRMLVG-MVDVIFSDVA-----------QP---DQVCFLC 231 (264)
Q Consensus 170 ~V~avD~s~~~~~~l~~~a~~---~~nV~~i~~D~~~~~~~~~~~~-~fD~V~~d~p-----------~~---~~~~~~~ 231 (264)
+|||+|+.+.+++...+.... ..+|++++.+-.++..+ +.+ ++|+|+.|.- .+ -.+...+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~--i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~a 78 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEY--IPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAA 78 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT----S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhh--CccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHH
Confidence 699999998776544443333 24799999998887765 344 8999999854 12 2334444
Q ss_pred HHHhCCC----------------cHHHHHHHHHHhhcchhhhhhhhhcC
Q 024665 232 LILFQPI----------------VINNLQSVNNETKGGIFEFLFSLFLN 264 (264)
Q Consensus 232 ~~~l~~~----------------~~~~l~~~~~~Lk~g~f~~l~~~~~~ 264 (264)
+..+.+. ..+.+.+.+..|....|.++.+.|+|
T Consensus 79 l~lL~~gG~i~iv~Y~GH~gG~eE~~av~~~~~~L~~~~~~V~~~~~~N 127 (140)
T PF06962_consen 79 LELLKPGGIITIVVYPGHPGGKEESEAVEEFLASLDQKEFNVLKYQFIN 127 (140)
T ss_dssp HHHEEEEEEEEEEE--STCHHHHHHHHHHHHHHTS-TTTEEEEEEEESS
T ss_pred HHhhccCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCcceEEEEEEEccC
Confidence 4444443 22334444444555667776666665
No 252
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=96.23 E-value=0.021 Score=49.01 Aligned_cols=72 Identities=15% Similarity=0.055 Sum_probs=45.8
Q ss_pred EEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHh---hcCCCeEEEEcCCCCchhhcccCCCccEEE-EcCC
Q 024665 147 VLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMA---KKRTNVIPIIEDARHPAKYRMLVGMVDVIF-SDVA 222 (264)
Q Consensus 147 VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a---~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~-~d~p 222 (264)
|.|+||=-|++.+.|.+. +...+|+|+|+++..++.+.+.. ....+|+++.+|..+..+ ..+.+|+|+ +-|-
T Consensus 1 vaDIGtDHgyLpi~L~~~-~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~---~~e~~d~ivIAGMG 76 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKN-GKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLK---PGEDVDTIVIAGMG 76 (205)
T ss_dssp EEEET-STTHHHHHHHHT-TSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG-----GGG---EEEEEEE-
T ss_pred CceeccchhHHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccC---CCCCCCEEEEecCC
Confidence 789999999999999987 44557999999976654444433 334489999999776432 112366665 5444
No 253
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=96.22 E-value=0.015 Score=53.75 Aligned_cols=81 Identities=20% Similarity=0.301 Sum_probs=61.0
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCC-CCEEEEEeCChHHHHHHHH------Hhh---cCCCeEEEEcCCCCchhhccc
Q 024665 141 IKPGARVLYLGAASGTTVSHVSDIVGP-NGVVYAVEFSHRSGRDLVN------MAK---KRTNVIPIIEDARHPAKYRML 210 (264)
Q Consensus 141 l~~g~~VLDlG~G~G~~s~~la~~~~~-~g~V~avD~s~~~~~~l~~------~a~---~~~nV~~i~~D~~~~~~~~~~ 210 (264)
++.-.+||-+|-|-|--.-.+.+. | -.+|+-||++|+|++-... .|. ..++++++..|+.+..+. .
T Consensus 287 ~~~a~~vLvlGGGDGLAlRellky--P~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~--a 362 (508)
T COG4262 287 VRGARSVLVLGGGDGLALRELLKY--PQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRT--A 362 (508)
T ss_pred ccccceEEEEcCCchHHHHHHHhC--CCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHh--h
Confidence 456678999999999888888876 5 5799999999988643221 111 124899999999887642 3
Q ss_pred CCCccEEEEcCCCch
Q 024665 211 VGMVDVIFSDVAQPD 225 (264)
Q Consensus 211 ~~~fD~V~~d~p~~~ 225 (264)
.++||+|++|.|.|.
T Consensus 363 ~~~fD~vIVDl~DP~ 377 (508)
T COG4262 363 ADMFDVVIVDLPDPS 377 (508)
T ss_pred cccccEEEEeCCCCC
Confidence 459999999999654
No 254
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=96.20 E-value=0.013 Score=50.04 Aligned_cols=75 Identities=16% Similarity=0.140 Sum_probs=41.5
Q ss_pred CCCEEEEEcccCCh----HHHHHHHHhC---C-CCEEEEEeCChHHHHHHHHH---------------hh----------
Q 024665 143 PGARVLYLGAASGT----TVSHVSDIVG---P-NGVVYAVEFSHRSGRDLVNM---------------AK---------- 189 (264)
Q Consensus 143 ~g~~VLDlG~G~G~----~s~~la~~~~---~-~g~V~avD~s~~~~~~l~~~---------------a~---------- 189 (264)
+--+||.+||+||- +++.+.+... + .-+|+|.|+|+.+++.+.+- .+
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 34589999999997 4444445221 1 35899999998776554310 00
Q ss_pred -----cCCCeEEEEcCCCCchhhcccCCCccEEEEc
Q 024665 190 -----KRTNVIPIIEDARHPAKYRMLVGMVDVIFSD 220 (264)
Q Consensus 190 -----~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d 220 (264)
.+.+|.|.+.|+.+.. ...+.||+|+|.
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~---~~~~~fD~I~CR 143 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPD---PPFGRFDLIFCR 143 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S---------EEEEEE-
T ss_pred eEChHHcCceEEEecccCCCC---cccCCccEEEec
Confidence 1127999999998822 134789999985
No 255
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=96.18 E-value=0.034 Score=47.93 Aligned_cols=79 Identities=13% Similarity=0.056 Sum_probs=43.9
Q ss_pred CCEEEEEcccCChHHHHHHHHhCCC-CEEEEEeCChHHHHHHHHH-----------------------------------
Q 024665 144 GARVLYLGAASGTTVSHVSDIVGPN-GVVYAVEFSHRSGRDLVNM----------------------------------- 187 (264)
Q Consensus 144 g~~VLDlG~G~G~~s~~la~~~~~~-g~V~avD~s~~~~~~l~~~----------------------------------- 187 (264)
.-+++|-|||+|++...+.-+-.+. ..|+|-|+++.+++-+.++
T Consensus 52 p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~sA 131 (246)
T PF11599_consen 52 PYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALESA 131 (246)
T ss_dssp -EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
T ss_pred CeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHHHH
Confidence 3589999999999999888764433 4699999997664221110
Q ss_pred -------hhc--CCCeEEEEcCCCCchhhcc--cCCCccEEEEcCC
Q 024665 188 -------AKK--RTNVIPIIEDARHPAKYRM--LVGMVDVIFSDVA 222 (264)
Q Consensus 188 -------a~~--~~nV~~i~~D~~~~~~~~~--~~~~fD~V~~d~p 222 (264)
+.. .....+.+.|++++..... .....|+|+.|.|
T Consensus 132 ~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlP 177 (246)
T PF11599_consen 132 DRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLP 177 (246)
T ss_dssp HHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--
T ss_pred HHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCC
Confidence 000 0146788999998654211 2235799999999
No 256
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=96.16 E-value=0.03 Score=50.04 Aligned_cols=74 Identities=14% Similarity=0.121 Sum_probs=49.9
Q ss_pred CCEEEEEcccCCh----HHHHHHHHhCC----CCEEEEEeCChHHHHHHHH-----Hhh---------------------
Q 024665 144 GARVLYLGAASGT----TVSHVSDIVGP----NGVVYAVEFSHRSGRDLVN-----MAK--------------------- 189 (264)
Q Consensus 144 g~~VLDlG~G~G~----~s~~la~~~~~----~g~V~avD~s~~~~~~l~~-----~a~--------------------- 189 (264)
--+||-++|+||- +++.|++.... ..+|+|.|+|..+++.+.. .+.
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y 176 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY 176 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence 3489999999996 55556666532 5689999999776543321 000
Q ss_pred -----cCCCeEEEEcCCCCchhhcccCCCccEEEEc
Q 024665 190 -----KRTNVIPIIEDARHPAKYRMLVGMVDVIFSD 220 (264)
Q Consensus 190 -----~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d 220 (264)
.+.+|.|-..|+.+... ..+.||+|+|-
T Consensus 177 ~v~~~ir~~V~F~~~NLl~~~~---~~~~fD~IfCR 209 (268)
T COG1352 177 RVKEELRKMVRFRRHNLLDDSP---FLGKFDLIFCR 209 (268)
T ss_pred EEChHHhcccEEeecCCCCCcc---ccCCCCEEEEc
Confidence 11268888888877542 34689999984
No 257
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.06 E-value=0.023 Score=51.91 Aligned_cols=68 Identities=15% Similarity=0.090 Sum_probs=48.0
Q ss_pred EEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEcCC
Q 024665 147 VLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVA 222 (264)
Q Consensus 147 VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p 222 (264)
||||.||.|.+++-+.+. + --.|.++|+++.+.+.... |. ++ ++++.|+.++... ....+|+++..+|
T Consensus 1 vidLF~G~GG~~~Gl~~a-G-~~~~~a~e~~~~a~~ty~~-N~--~~-~~~~~Di~~~~~~--~~~~~dvl~gg~P 68 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQA-G-FKCVFASEIDKYAQKTYEA-NF--GN-KVPFGDITKISPS--DIPDFDILLGGFP 68 (315)
T ss_pred CEEEecCccHHHHHHHHc-C-CeEEEEEeCCHHHHHHHHH-hC--CC-CCCccChhhhhhh--hCCCcCEEEecCC
Confidence 699999999999888754 2 2357889999877544333 21 23 5667898876532 1246899999988
No 258
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=96.05 E-value=0.11 Score=46.60 Aligned_cols=75 Identities=16% Similarity=0.189 Sum_probs=41.0
Q ss_pred CEEEEEcccCChHHH-HHHHHhCCCCEEEEEeCChHHHHHHHHHhh----cCCCeEEEEcCCCCchhhcccCCCccEEEE
Q 024665 145 ARVLYLGAASGTTVS-HVSDIVGPNGVVYAVEFSHRSGRDLVNMAK----KRTNVIPIIEDARHPAKYRMLVGMVDVIFS 219 (264)
Q Consensus 145 ~~VLDlG~G~G~~s~-~la~~~~~~g~V~avD~s~~~~~~l~~~a~----~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~ 219 (264)
++|+=+|||+=-+|. .|+....+...|..+|+++.+.+...+... ....+.+++.|+.+... ....||+|+.
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~---dl~~~DvV~l 198 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTY---DLKEYDVVFL 198 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-G---G----SEEEE
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhcccc---ccccCCEEEE
Confidence 499999999766555 555555556789999999877543333222 34489999999987542 2358999997
Q ss_pred cCC
Q 024665 220 DVA 222 (264)
Q Consensus 220 d~p 222 (264)
-..
T Consensus 199 Aal 201 (276)
T PF03059_consen 199 AAL 201 (276)
T ss_dssp -TT
T ss_pred hhh
Confidence 655
No 259
>PHA01634 hypothetical protein
Probab=95.99 E-value=0.04 Score=43.72 Aligned_cols=74 Identities=14% Similarity=0.096 Sum_probs=47.9
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEcCC
Q 024665 143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVA 222 (264)
Q Consensus 143 ~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p 222 (264)
.+.+|+|+|+..|..++.++.. .+.+|+++|.++...+.+.+..+ ..|| +--+.-...+...-++||+.+.|--
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~--GAK~Vva~E~~~kl~k~~een~k-~nnI---~DK~v~~~eW~~~Y~~~Di~~iDCe 101 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLR--GASFVVQYEKEEKLRKKWEEVCA-YFNI---CDKAVMKGEWNGEYEDVDIFVMDCE 101 (156)
T ss_pred cCCEEEEecCCccchhhHHhhc--CccEEEEeccCHHHHHHHHHHhh-hhee---eeceeecccccccCCCcceEEEEcc
Confidence 5789999999999999999866 67799999999877544433222 2121 1111111111122368999988855
No 260
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=95.88 E-value=0.0096 Score=50.49 Aligned_cols=49 Identities=22% Similarity=0.239 Sum_probs=34.1
Q ss_pred hHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHH
Q 024665 126 SKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSG 181 (264)
Q Consensus 126 s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~ 181 (264)
..|+..++ ++.-.+++.|||..||||+++.++.++ .-+.+++|+++...
T Consensus 178 ~~l~~~lI----~~~t~~gdiVlDpF~GSGTT~~aa~~l---~R~~ig~E~~~~y~ 226 (231)
T PF01555_consen 178 VELIERLI----KASTNPGDIVLDPFAGSGTTAVAAEEL---GRRYIGIEIDEEYC 226 (231)
T ss_dssp HHHHHHHH----HHHS-TT-EEEETT-TTTHHHHHHHHT---T-EEEEEESSHHHH
T ss_pred HHHHHHHH----HhhhccceeeehhhhccChHHHHHHHc---CCeEEEEeCCHHHH
Confidence 34555554 334578999999999999998888766 33799999998653
No 261
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=95.74 E-value=0.058 Score=49.52 Aligned_cols=73 Identities=19% Similarity=0.120 Sum_probs=50.8
Q ss_pred CEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCC-CccEEEEcCCC
Q 024665 145 ARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVG-MVDVIFSDVAQ 223 (264)
Q Consensus 145 ~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~-~fD~V~~d~p~ 223 (264)
.+|+||+||.|.+.+-+... + --.+.++|+++.+.+.. +.|. +...+++.|+...... .... .+|+|+.-+|+
T Consensus 4 ~~~idLFsG~GG~~lGf~~a-g-f~~~~a~Eid~~a~~ty-~~n~--~~~~~~~~di~~~~~~-~~~~~~~DvligGpPC 77 (328)
T COG0270 4 MKVIDLFAGIGGLSLGFEEA-G-FEIVFANEIDPPAVATY-KANF--PHGDIILGDIKELDGE-ALRKSDVDVLIGGPPC 77 (328)
T ss_pred ceEEeeccCCchHHHHHHhc-C-CeEEEEEecCHHHHHHH-HHhC--CCCceeechHhhcChh-hccccCCCEEEeCCCC
Confidence 47999999999999888765 2 33699999998664332 2221 1256778888765532 1223 79999999993
No 262
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=95.68 E-value=0.034 Score=48.46 Aligned_cols=89 Identities=13% Similarity=0.146 Sum_probs=59.9
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCC--CeEEEEcCCCCchhhcccCCCccEEEEc
Q 024665 143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRT--NVIPIIEDARHPAKYRMLVGMVDVIFSD 220 (264)
Q Consensus 143 ~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~--nV~~i~~D~~~~~~~~~~~~~fD~V~~d 220 (264)
.-..++|+||+.|.+.-|+... .-.+++-+|.|-.|++.... +. .+ .+.....|-..++ +..+++|+|++.
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e--~vekli~~DtS~~M~~s~~~-~q-dp~i~~~~~v~DEE~Ld---f~ens~DLiisS 144 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGE--GVEKLIMMDTSYDMIKSCRD-AQ-DPSIETSYFVGDEEFLD---FKENSVDLIISS 144 (325)
T ss_pred hCcceeecccchhhhhHHHHhc--chhheeeeecchHHHHHhhc-cC-CCceEEEEEecchhccc---ccccchhhhhhh
Confidence 3557999999999999998765 34589999999877543222 11 12 3555677755444 345799999987
Q ss_pred CCC-----chHHHHHHHHHhCCC
Q 024665 221 VAQ-----PDQVCFLCLILFQPI 238 (264)
Q Consensus 221 ~p~-----~~~~~~~~~~~l~~~ 238 (264)
... -....+....+++|.
T Consensus 145 lslHW~NdLPg~m~~ck~~lKPD 167 (325)
T KOG2940|consen 145 LSLHWTNDLPGSMIQCKLALKPD 167 (325)
T ss_pred hhhhhhccCchHHHHHHHhcCCC
Confidence 762 223445556667766
No 263
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=95.55 E-value=0.1 Score=48.11 Aligned_cols=93 Identities=20% Similarity=0.186 Sum_probs=57.0
Q ss_pred cccccCCCCCCEEEEEccc-CChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcC-CCCchhhcccCC
Q 024665 135 GVDNIWIKPGARVLYLGAA-SGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIED-ARHPAKYRMLVG 212 (264)
Q Consensus 135 ~l~~~~l~~g~~VLDlG~G-~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D-~~~~~~~~~~~~ 212 (264)
.|....++|+++|+=+|+| .|..++.+|..++ .+|+++|.+++-. +.+++..--+++... ..... ...+
T Consensus 158 alk~~~~~pG~~V~I~G~GGlGh~avQ~Aka~g--a~Via~~~~~~K~----e~a~~lGAd~~i~~~~~~~~~---~~~~ 228 (339)
T COG1064 158 ALKKANVKPGKWVAVVGAGGLGHMAVQYAKAMG--AEVIAITRSEEKL----ELAKKLGADHVINSSDSDALE---AVKE 228 (339)
T ss_pred ehhhcCCCCCCEEEEECCcHHHHHHHHHHHHcC--CeEEEEeCChHHH----HHHHHhCCcEEEEcCCchhhH---HhHh
Confidence 3455679999999999887 3457778888765 6999999998543 333333222344422 21111 1223
Q ss_pred CccEEEEcCCCchHHHHHHHHHhCCC
Q 024665 213 MVDVIFSDVAQPDQVCFLCLILFQPI 238 (264)
Q Consensus 213 ~fD~V~~d~p~~~~~~~~~~~~l~~~ 238 (264)
.||+|+..++ ......++..+++.
T Consensus 229 ~~d~ii~tv~--~~~~~~~l~~l~~~ 252 (339)
T COG1064 229 IADAIIDTVG--PATLEPSLKALRRG 252 (339)
T ss_pred hCcEEEECCC--hhhHHHHHHHHhcC
Confidence 5999998777 34444555555443
No 264
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=95.53 E-value=0.034 Score=48.02 Aligned_cols=79 Identities=18% Similarity=0.201 Sum_probs=60.2
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc-CCCeEEEEcCCCCchhhcccCCCccEEEE
Q 024665 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK-RTNVIPIIEDARHPAKYRMLVGMVDVIFS 219 (264)
Q Consensus 141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~-~~nV~~i~~D~~~~~~~~~~~~~fD~V~~ 219 (264)
-..|.+||.+|-|-|.....+-+. +--+=+-||-.+.+.+.++..... +.||+++.+-..+.... ...+.||-|+-
T Consensus 99 ~tkggrvLnVGFGMgIidT~iQe~--~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~-L~d~~FDGI~y 175 (271)
T KOG1709|consen 99 STKGGRVLNVGFGMGIIDTFIQEA--PPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNT-LPDKHFDGIYY 175 (271)
T ss_pred hhCCceEEEeccchHHHHHHHhhc--CCcceEEEecCHHHHHHHHhcccccccceEEEecchHhhhcc-ccccCcceeEe
Confidence 367889999999999999988876 334567789999888777776643 34999988776664432 34568999999
Q ss_pred cCC
Q 024665 220 DVA 222 (264)
Q Consensus 220 d~p 222 (264)
|.-
T Consensus 176 DTy 178 (271)
T KOG1709|consen 176 DTY 178 (271)
T ss_pred ech
Confidence 865
No 265
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=95.46 E-value=0.045 Score=51.29 Aligned_cols=92 Identities=20% Similarity=0.004 Sum_probs=57.3
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHH---HHHHHhhcCC-CeEEEEcCCCCchhhcccCCCccEEE
Q 024665 143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGR---DLVNMAKKRT-NVIPIIEDARHPAKYRMLVGMVDVIF 218 (264)
Q Consensus 143 ~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~---~l~~~a~~~~-nV~~i~~D~~~~~~~~~~~~~fD~V~ 218 (264)
..-+|||.=||||.=++..+..+....+|++.|+|+++.+ ++++.|.... .+++.+.|+..+.. .....||+|=
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~--~~~~~fD~ID 126 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLY--SRQERFDVID 126 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHC--HSTT-EEEEE
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhh--hccccCCEEE
Confidence 3458999999999999999998766679999999987653 3333444334 58899999876431 1346899999
Q ss_pred EcCC-CchHHHHHHHHHhC
Q 024665 219 SDVA-QPDQVCFLCLILFQ 236 (264)
Q Consensus 219 ~d~p-~~~~~~~~~~~~l~ 236 (264)
+||= .|......++.+.+
T Consensus 127 lDPfGSp~pfldsA~~~v~ 145 (377)
T PF02005_consen 127 LDPFGSPAPFLDSALQAVK 145 (377)
T ss_dssp E--SS--HHHHHHHHHHEE
T ss_pred eCCCCCccHhHHHHHHHhh
Confidence 9976 44444444444443
No 266
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=95.41 E-value=0.15 Score=47.32 Aligned_cols=89 Identities=20% Similarity=0.053 Sum_probs=61.6
Q ss_pred CCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC--CCeEEEEcCCCCchhhcccCCCccEEEEcC
Q 024665 144 GARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIFSDV 221 (264)
Q Consensus 144 g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~--~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~ 221 (264)
..+|||.-||||.=++..|...... +|+..|+|+.+.+-..++...+ .+..+++.|+..+.. .....||+|=.||
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~-~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~--~~~~~fd~IDiDP 129 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVV-KVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLH--ELHRAFDVIDIDP 129 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCcc-EEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHH--hcCCCccEEecCC
Confidence 5689999999999999999887644 8999999998864444433333 167777788765432 2336899998887
Q ss_pred C-CchHHHHHHHHHh
Q 024665 222 A-QPDQVCFLCLILF 235 (264)
Q Consensus 222 p-~~~~~~~~~~~~l 235 (264)
= .|......++.+.
T Consensus 130 FGSPaPFlDaA~~s~ 144 (380)
T COG1867 130 FGSPAPFLDAALRSV 144 (380)
T ss_pred CCCCchHHHHHHHHh
Confidence 6 3443433344333
No 267
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=95.40 E-value=0.072 Score=46.95 Aligned_cols=75 Identities=13% Similarity=0.010 Sum_probs=49.9
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHh-hcCCCeEEEEcCCCCchhhcccCCCccEEEE
Q 024665 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMA-KKRTNVIPIIEDARHPAKYRMLVGMVDVIFS 219 (264)
Q Consensus 141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a-~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~ 219 (264)
+.+-++|||||||.=-+++.+.... +...++|+|++..+++-+.... ....+..+...|...-. .....|+.++
T Consensus 103 ~~~p~sVlDigCGlNPlalp~~~~~-~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~----~~~~~DlaLl 177 (251)
T PF07091_consen 103 IPPPDSVLDIGCGLNPLALPWMPEA-PGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDP----PKEPADLALL 177 (251)
T ss_dssp S---SEEEEET-TTCHHHHHTTTSS-TT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSH----TTSEESEEEE
T ss_pred CCCCchhhhhhccCCceehhhcccC-CCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccC----CCCCcchhhH
Confidence 4557899999999999998877552 4569999999987765544442 33458888888987643 2357888886
Q ss_pred c
Q 024665 220 D 220 (264)
Q Consensus 220 d 220 (264)
=
T Consensus 178 l 178 (251)
T PF07091_consen 178 L 178 (251)
T ss_dssp E
T ss_pred H
Confidence 3
No 268
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=95.40 E-value=0.057 Score=46.44 Aligned_cols=86 Identities=9% Similarity=-0.030 Sum_probs=44.9
Q ss_pred HHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhccc
Q 024665 131 AVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRML 210 (264)
Q Consensus 131 ~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~ 210 (264)
.++..|. ...+...|-|+|||-..++..+. ..-+|+..|+-. .++ .++..|+.+.+. .
T Consensus 62 ~iI~~l~--~~~~~~viaD~GCGdA~la~~~~----~~~~V~SfDLva-----------~n~--~Vtacdia~vPL---~ 119 (219)
T PF05148_consen 62 VIIEWLK--KRPKSLVIADFGCGDAKLAKAVP----NKHKVHSFDLVA-----------PNP--RVTACDIANVPL---E 119 (219)
T ss_dssp HHHHHHC--TS-TTS-EEEES-TT-HHHHH------S---EEEEESS------------SST--TEEES-TTS-S-----
T ss_pred HHHHHHH--hcCCCEEEEECCCchHHHHHhcc----cCceEEEeeccC-----------CCC--CEEEecCccCcC---C
Confidence 3444444 24456799999999999885543 233699999874 122 367799988763 4
Q ss_pred CCCccEEEEcCC----CchHHHHHHHHHhCCC
Q 024665 211 VGMVDVIFSDVA----QPDQVCFLCLILFQPI 238 (264)
Q Consensus 211 ~~~fD~V~~d~p----~~~~~~~~~~~~l~~~ 238 (264)
.+.+|++++-.+ ........+...|++.
T Consensus 120 ~~svDv~VfcLSLMGTn~~~fi~EA~RvLK~~ 151 (219)
T PF05148_consen 120 DESVDVAVFCLSLMGTNWPDFIREANRVLKPG 151 (219)
T ss_dssp TT-EEEEEEES---SS-HHHHHHHHHHHEEEE
T ss_pred CCceeEEEEEhhhhCCCcHHHHHHHHheeccC
Confidence 578999998655 2223344444455544
No 269
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=95.33 E-value=0.24 Score=37.19 Aligned_cols=71 Identities=20% Similarity=0.150 Sum_probs=44.6
Q ss_pred EEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCC-C-eEEEEcCCCCc-hhhcccC-CCccEEEEc
Q 024665 147 VLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRT-N-VIPIIEDARHP-AKYRMLV-GMVDVIFSD 220 (264)
Q Consensus 147 VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~-n-V~~i~~D~~~~-~~~~~~~-~~fD~V~~d 220 (264)
|||++||+|..+ .++........++++|+++.++........... + +.++..|.... .+ ... ..||++.+.
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~ 126 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLP--FEDSASFDLVISL 126 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCC--CCCCCceeEEeee
Confidence 999999999988 555553222379999999877544222222211 1 68888887662 22 122 379999433
No 270
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=95.28 E-value=0.051 Score=46.51 Aligned_cols=80 Identities=11% Similarity=0.218 Sum_probs=52.4
Q ss_pred CEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHH---HHHHHHHhhcC------CCeEEEEcCCCCchhhcccCCCcc
Q 024665 145 ARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRS---GRDLVNMAKKR------TNVIPIIEDARHPAKYRMLVGMVD 215 (264)
Q Consensus 145 ~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~---~~~l~~~a~~~------~nV~~i~~D~~~~~~~~~~~~~fD 215 (264)
-.+.|+|||-|.+.+.||.++ |+-.|.+.||...+ +++-|+..... .||.+...++..+.+.-+..++.+
T Consensus 62 vefaDIGCGyGGLlv~Lsp~f-PdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLs 140 (249)
T KOG3115|consen 62 VEFADIGCGYGGLLMKLAPKF-PDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLS 140 (249)
T ss_pred ceEEeeccCccchhhhccccC-ccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhcccc
Confidence 458999999999999999986 67789999998433 33333333322 378888888776544322233445
Q ss_pred EEEEcCCCch
Q 024665 216 VIFSDVAQPD 225 (264)
Q Consensus 216 ~V~~d~p~~~ 225 (264)
-.+.-.|.|.
T Consensus 141 kmff~fpdpH 150 (249)
T KOG3115|consen 141 KMFFLFPDPH 150 (249)
T ss_pred cceeecCChh
Confidence 5554445443
No 271
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=95.26 E-value=0.041 Score=47.53 Aligned_cols=95 Identities=18% Similarity=0.033 Sum_probs=56.1
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc-CC-CeEEEEcCCCCchhhcccCCCccEEEEc
Q 024665 143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK-RT-NVIPIIEDARHPAKYRMLVGMVDVIFSD 220 (264)
Q Consensus 143 ~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~-~~-nV~~i~~D~~~~~~~~~~~~~fD~V~~d 220 (264)
.-.+.||+|||.|..|..+...+ --+|-.||..+..++.+.+.... .. -.++++.-+.++.+ ...+||+|.+-
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~--f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P---~~~~YDlIW~Q 129 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPV--FDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTP---EEGKYDLIWIQ 129 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC---SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG-------TT-EEEEEEE
T ss_pred CcceEEecccccchhHHHHHHHh--cCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccC---CCCcEeEEEeh
Confidence 45689999999999998775332 23899999999886665544333 12 35677777777653 23689999973
Q ss_pred CCCchHHHHHHHHHhCC-CcHHHHHHHHHHhh
Q 024665 221 VAQPDQVCFLCLILFQP-IVINNLQSVNNETK 251 (264)
Q Consensus 221 ~p~~~~~~~~~~~~l~~-~~~~~l~~~~~~Lk 251 (264)
= .+..|.- .++.++..+.++|+
T Consensus 130 W---------~lghLTD~dlv~fL~RCk~~L~ 152 (218)
T PF05891_consen 130 W---------CLGHLTDEDLVAFLKRCKQALK 152 (218)
T ss_dssp S----------GGGS-HHHHHHHHHHHHHHEE
T ss_pred H---------hhccCCHHHHHHHHHHHHHhCc
Confidence 1 1111111 16667777777777
No 272
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=95.26 E-value=0.15 Score=45.42 Aligned_cols=72 Identities=22% Similarity=0.227 Sum_probs=55.0
Q ss_pred CCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEE
Q 024665 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFS 219 (264)
Q Consensus 140 ~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~ 219 (264)
-+.|++.-+|||+.+|.||..|... .-.||+||.-+-+ +.......|+....|-.++.+ -..++|..+|
T Consensus 208 rL~~~M~avDLGAcPGGWTyqLVkr---~m~V~aVDng~ma-----~sL~dtg~v~h~r~DGfk~~P---~r~~idWmVC 276 (358)
T COG2933 208 RLAPGMWAVDLGACPGGWTYQLVKR---NMRVYAVDNGPMA-----QSLMDTGQVTHLREDGFKFRP---TRSNIDWMVC 276 (358)
T ss_pred hhcCCceeeecccCCCccchhhhhc---ceEEEEeccchhh-----hhhhcccceeeeeccCccccc---CCCCCceEEe
Confidence 4789999999999999999999765 4589999987522 111123478888888877653 1358999999
Q ss_pred cCC
Q 024665 220 DVA 222 (264)
Q Consensus 220 d~p 222 (264)
|+.
T Consensus 277 DmV 279 (358)
T COG2933 277 DMV 279 (358)
T ss_pred ehh
Confidence 988
No 273
>PRK11524 putative methyltransferase; Provisional
Probab=95.06 E-value=0.04 Score=49.48 Aligned_cols=39 Identities=23% Similarity=0.029 Sum_probs=32.3
Q ss_pred CCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHH
Q 024665 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSG 181 (264)
Q Consensus 140 ~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~ 181 (264)
.=.+|+.|||-.||||++++++.++ .-+.+++|++++..
T Consensus 205 ~S~~GD~VLDPF~GSGTT~~AA~~l---gR~~IG~Ei~~~Y~ 243 (284)
T PRK11524 205 SSNPGDIVLDPFAGSFTTGAVAKAS---GRKFIGIEINSEYI 243 (284)
T ss_pred hCCCCCEEEECCCCCcHHHHHHHHc---CCCEEEEeCCHHHH
Confidence 3479999999999999998887766 33799999998553
No 274
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=94.92 E-value=0.11 Score=46.57 Aligned_cols=79 Identities=19% Similarity=0.259 Sum_probs=57.0
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC--CCeEEEEcCCCCchhhcccCCCccEEEEc
Q 024665 143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYRMLVGMVDVIFSD 220 (264)
Q Consensus 143 ~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~--~nV~~i~~D~~~~~~~~~~~~~fD~V~~d 220 (264)
.|..|+=+| -=-++...+.+.+-..+|.-||++++.+.-..+.+.+. .||+.+..|++++.+. .+..+||+.+.|
T Consensus 152 ~gK~I~vvG--DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~plpe-~~~~kFDvfiTD 228 (354)
T COG1568 152 EGKEIFVVG--DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRNPLPE-DLKRKFDVFITD 228 (354)
T ss_pred CCCeEEEEc--CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccchhheeehhcccChH-HHHhhCCeeecC
Confidence 466788887 44455555555565668999999998875544444433 2799999999997654 456799999999
Q ss_pred CCCc
Q 024665 221 VAQP 224 (264)
Q Consensus 221 ~p~~ 224 (264)
||..
T Consensus 229 PpeT 232 (354)
T COG1568 229 PPET 232 (354)
T ss_pred chhh
Confidence 9943
No 275
>PRK10458 DNA cytosine methylase; Provisional
Probab=94.72 E-value=0.2 Score=48.33 Aligned_cols=78 Identities=19% Similarity=0.143 Sum_probs=51.7
Q ss_pred CCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhh--------------cc
Q 024665 144 GARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKY--------------RM 209 (264)
Q Consensus 144 g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~--------------~~ 209 (264)
.-+++||.||.|.+++-+-.. + --.|.++|+++.+.+....+-...++.++++.|++++... ..
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~a-G-~~~v~a~Eid~~A~~TY~~N~~~~p~~~~~~~DI~~i~~~~~~~~~~~~~~~~~~~ 165 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAI-G-GQCVFTSEWNKHAVRTYKANWYCDPATHRFNEDIRDITLSHKEGVSDEEAAEHIRQ 165 (467)
T ss_pred CceEEEeCcCccHHHHHHHHc-C-CEEEEEEechHHHHHHHHHHcCCCCccceeccChhhCccccccccchhhhhhhhhc
Confidence 458999999999999998654 3 2368999999876544333211123456677787765421 00
Q ss_pred cCCCccEEEEcCCC
Q 024665 210 LVGMVDVIFSDVAQ 223 (264)
Q Consensus 210 ~~~~fD~V~~d~p~ 223 (264)
....+|+++.-+|+
T Consensus 166 ~~p~~DvL~gGpPC 179 (467)
T PRK10458 166 HIPDHDVLLAGFPC 179 (467)
T ss_pred cCCCCCEEEEcCCC
Confidence 12368999999994
No 276
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=94.36 E-value=0.15 Score=45.21 Aligned_cols=57 Identities=18% Similarity=0.116 Sum_probs=41.3
Q ss_pred CCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEcCC
Q 024665 144 GARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVA 222 (264)
Q Consensus 144 g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p 222 (264)
...|-|+|||-+-+++. ..-+|+..|+-+ .|=.++..|+++.+ ..++++|++++-.+
T Consensus 181 ~~vIaD~GCGEakiA~~------~~~kV~SfDL~a-------------~~~~V~~cDm~~vP---l~d~svDvaV~CLS 237 (325)
T KOG3045|consen 181 NIVIADFGCGEAKIASS------ERHKVHSFDLVA-------------VNERVIACDMRNVP---LEDESVDVAVFCLS 237 (325)
T ss_pred ceEEEecccchhhhhhc------cccceeeeeeec-------------CCCceeeccccCCc---CccCcccEEEeeHh
Confidence 45789999999887761 223699998753 13457889999866 35679999987544
No 277
>PRK13699 putative methylase; Provisional
Probab=94.33 E-value=0.073 Score=46.35 Aligned_cols=39 Identities=23% Similarity=0.181 Sum_probs=31.9
Q ss_pred CCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHH
Q 024665 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSG 181 (264)
Q Consensus 140 ~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~ 181 (264)
.-++++.|||-.||||++...+.+. .-..+++|+++...
T Consensus 160 ~s~~g~~vlDpf~Gsgtt~~aa~~~---~r~~~g~e~~~~y~ 198 (227)
T PRK13699 160 FTHPNAIVLDPFAGSGSTCVAALQS---GRRYIGIELLEQYH 198 (227)
T ss_pred hCCCCCEEEeCCCCCCHHHHHHHHc---CCCEEEEecCHHHH
Confidence 3568999999999999998888765 33789999997553
No 278
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=94.29 E-value=0.26 Score=37.42 Aligned_cols=82 Identities=12% Similarity=0.122 Sum_probs=54.6
Q ss_pred ccCChHHHHHHHHhCCCC-EEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcc-cCCCccEEEEcCCCchHHHH
Q 024665 152 AASGTTVSHVSDIVGPNG-VVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRM-LVGMVDVIFSDVAQPDQVCF 229 (264)
Q Consensus 152 ~G~G~~s~~la~~~~~~g-~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~-~~~~fD~V~~d~p~~~~~~~ 229 (264)
||.|.++..+++.+.... .|+.+|.++... +.+... .+.++.+|+++...+.. -...+|.|++..+.......
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~----~~~~~~-~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~~n~~ 78 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERV----EELREE-GVEVIYGDATDPEVLERAGIEKADAVVILTDDDEENLL 78 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHH----HHHHHT-TSEEEES-TTSHHHHHHTTGGCESEEEEESSSHHHHHH
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHH----HHHHhc-ccccccccchhhhHHhhcCccccCEEEEccCCHHHHHH
Confidence 788899999998887777 899999998553 333222 37899999999765422 23589999988775544333
Q ss_pred H--HHHHhCCC
Q 024665 230 L--CLILFQPI 238 (264)
Q Consensus 230 ~--~~~~l~~~ 238 (264)
. ....+.+.
T Consensus 79 ~~~~~r~~~~~ 89 (116)
T PF02254_consen 79 IALLARELNPD 89 (116)
T ss_dssp HHHHHHHHTTT
T ss_pred HHHHHHHHCCC
Confidence 3 33444554
No 279
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=94.08 E-value=0.21 Score=43.90 Aligned_cols=18 Identities=11% Similarity=0.207 Sum_probs=12.5
Q ss_pred EEEEcccCChHHHHHHHH
Q 024665 147 VLYLGAASGTTVSHVSDI 164 (264)
Q Consensus 147 VLDlG~G~G~~s~~la~~ 164 (264)
-++.--=+|-..+.||.+
T Consensus 186 AVEfs~rsGRdL~nmAkk 203 (317)
T KOG1596|consen 186 AVEFSHRSGRDLINMAKK 203 (317)
T ss_pred EEEecccchHHHHHHhhc
Confidence 345556677788888876
No 280
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=93.97 E-value=0.02 Score=49.18 Aligned_cols=39 Identities=28% Similarity=0.338 Sum_probs=33.3
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHH
Q 024665 143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDL 184 (264)
Q Consensus 143 ~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l 184 (264)
...++||+|+|.|-+|.+++..+. +|||.|.|..|..++
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~fe---evyATElS~tMr~rL 150 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPTFE---EVYATELSWTMRDRL 150 (288)
T ss_pred CCeeEEeccCCCcchhhhhcchHH---HHHHHHhhHHHHHHH
Confidence 346899999999999999998876 799999999875443
No 281
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=93.84 E-value=0.17 Score=45.06 Aligned_cols=62 Identities=21% Similarity=0.214 Sum_probs=38.4
Q ss_pred CEEEEEcccCCh--HHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCC--eEEEEcCCCCchh
Q 024665 145 ARVLYLGAASGT--TVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTN--VIPIIEDARHPAK 206 (264)
Q Consensus 145 ~~VLDlG~G~G~--~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~n--V~~i~~D~~~~~~ 206 (264)
...||||||-=+ .+..+|+.+.|.++|+=||+++-++..........++ ..++++|++++..
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~ 135 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEA 135 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHH
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHH
Confidence 479999999765 6788999999999999999998664333333333446 8999999999753
No 282
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=93.17 E-value=0.19 Score=46.96 Aligned_cols=95 Identities=17% Similarity=0.174 Sum_probs=68.0
Q ss_pred HHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCCh---HHHHHHH-------HHhhcCC-CeE
Q 024665 127 KLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSH---RSGRDLV-------NMAKKRT-NVI 195 (264)
Q Consensus 127 ~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~---~~~~~l~-------~~a~~~~-nV~ 195 (264)
...+++....+++.+.|++...|+|.|.|.+...+|...+ ..+=+++|+.. .++.... ++..+++ .++
T Consensus 176 ~~~~ql~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~-~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~ 254 (419)
T KOG3924|consen 176 TQLEQLRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAG-CKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIE 254 (419)
T ss_pred hhHHHHHHHHHHhccCCCCcccCCCcccchhhHHHHHhhc-cccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCcee
Confidence 3555666667788899999999999999999999998864 33567888762 2322222 2232333 588
Q ss_pred EEEcCCCCchhhcccCCCccEEEEcCC
Q 024665 196 PIIEDARHPAKYRMLVGMVDVIFSDVA 222 (264)
Q Consensus 196 ~i~~D~~~~~~~~~~~~~fD~V~~d~p 222 (264)
.++++..++.....+....++||+|-.
T Consensus 255 ~i~gsf~~~~~v~eI~~eatvi~vNN~ 281 (419)
T KOG3924|consen 255 TIHGSFLDPKRVTEIQTEATVIFVNNV 281 (419)
T ss_pred ecccccCCHHHHHHHhhcceEEEEecc
Confidence 999999987655455678999998765
No 283
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=92.85 E-value=0.63 Score=40.30 Aligned_cols=79 Identities=16% Similarity=0.143 Sum_probs=54.8
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHh---hcCCCeEEEEcCCCCchhhcccCCCccEE
Q 024665 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMA---KKRTNVIPIIEDARHPAKYRMLVGMVDVI 217 (264)
Q Consensus 141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a---~~~~nV~~i~~D~~~~~~~~~~~~~fD~V 217 (264)
++.+..++|+||=-+++.+.|... .+...+++.|+++...+.++++- .....+++.++|..... .....+|+|
T Consensus 14 V~~~~~iaDIGsDHAYLp~~Lv~~-~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l---~~~d~~d~i 89 (226)
T COG2384 14 VKQGARIADIGSDHAYLPIYLVKN-NPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVL---ELEDEIDVI 89 (226)
T ss_pred HHcCCceeeccCchhHhHHHHHhc-CCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCcccc---CccCCcCEE
Confidence 456777999999999999999876 45678999999965544444433 33347888888875543 123367776
Q ss_pred E-EcCCC
Q 024665 218 F-SDVAQ 223 (264)
Q Consensus 218 ~-~d~p~ 223 (264)
+ +-+--
T Consensus 90 vIAGMGG 96 (226)
T COG2384 90 VIAGMGG 96 (226)
T ss_pred EEeCCcH
Confidence 5 55543
No 284
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=92.79 E-value=0.66 Score=43.68 Aligned_cols=79 Identities=19% Similarity=0.225 Sum_probs=54.4
Q ss_pred CEEEEEcccCChHHHHHHHHhCCC--CEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEcCC
Q 024665 145 ARVLYLGAASGTTVSHVSDIVGPN--GVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVA 222 (264)
Q Consensus 145 ~~VLDlG~G~G~~s~~la~~~~~~--g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p 222 (264)
++||=+|| |..+..+|..+... .+|+..|.+....+++.+.. ..++++++-|+.+......+...+|+|+.-.|
T Consensus 2 ~~ilviGa--G~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~--~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p 77 (389)
T COG1748 2 MKILVIGA--GGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELI--GGKVEALQVDAADVDALVALIKDFDLVINAAP 77 (389)
T ss_pred CcEEEECC--chhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhc--cccceeEEecccChHHHHHHHhcCCEEEEeCC
Confidence 46889999 77777776664322 59999999975543333322 23799999999998655445667799997777
Q ss_pred CchHH
Q 024665 223 QPDQV 227 (264)
Q Consensus 223 ~~~~~ 227 (264)
++...
T Consensus 78 ~~~~~ 82 (389)
T COG1748 78 PFVDL 82 (389)
T ss_pred chhhH
Confidence 44433
No 285
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=92.56 E-value=0.29 Score=46.50 Aligned_cols=58 Identities=16% Similarity=0.082 Sum_probs=42.1
Q ss_pred EEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHH---HHHHHHhhcCCCeEEEEcCCCCch
Q 024665 146 RVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSG---RDLVNMAKKRTNVIPIIEDARHPA 205 (264)
Q Consensus 146 ~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~---~~l~~~a~~~~nV~~i~~D~~~~~ 205 (264)
.|||+|+|||-++..++... +-.|||+|.-..|+ +....++...++|++|..--++..
T Consensus 69 ~vLdigtGTGLLSmMAvrag--aD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev~ 129 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAG--ADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEVK 129 (636)
T ss_pred EEEEccCCccHHHHHHHHhc--CCeEEeehhhchHHHHHHHHHhcCCCccceeeeccccceee
Confidence 59999999999999888774 34699999986664 333334444458888877666543
No 286
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=92.15 E-value=2.1 Score=35.34 Aligned_cols=71 Identities=18% Similarity=0.185 Sum_probs=46.8
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhc-ccCCCccEEEEcC
Q 024665 143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYR-MLVGMVDVIFSDV 221 (264)
Q Consensus 143 ~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~-~~~~~fD~V~~d~ 221 (264)
+..+|+=|+|=|=...+. ....+..+++-.|++.+.. ....+ +++.-|...+.... .+..+||+|++||
T Consensus 25 ~~~~iaclstPsl~~~l~--~~~~~~~~~~Lle~D~RF~-------~~~~~-~F~fyD~~~p~~~~~~l~~~~d~vv~DP 94 (162)
T PF10237_consen 25 DDTRIACLSTPSLYEALK--KESKPRIQSFLLEYDRRFE-------QFGGD-EFVFYDYNEPEELPEELKGKFDVVVIDP 94 (162)
T ss_pred CCCEEEEEeCcHHHHHHH--hhcCCCccEEEEeecchHH-------hcCCc-ceEECCCCChhhhhhhcCCCceEEEECC
Confidence 567898887755443333 3334566899999998761 12224 57788887765331 2346999999999
Q ss_pred CC
Q 024665 222 AQ 223 (264)
Q Consensus 222 p~ 223 (264)
|.
T Consensus 95 PF 96 (162)
T PF10237_consen 95 PF 96 (162)
T ss_pred CC
Confidence 93
No 287
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=91.93 E-value=0.46 Score=45.63 Aligned_cols=110 Identities=16% Similarity=0.168 Sum_probs=72.3
Q ss_pred CCCCC-EEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHh-hcCCCeEEEEcCCCCchhhcccCCCccEEE
Q 024665 141 IKPGA-RVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMA-KKRTNVIPIIEDARHPAKYRMLVGMVDVIF 218 (264)
Q Consensus 141 l~~g~-~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a-~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~ 218 (264)
++|-. ++|-+|||.=-++.++-+-. --.|+.+|+|+-.+..+...+ +.++-+.+...|++... +..++||+|+
T Consensus 45 ~~p~~~~~l~lGCGNS~l~e~ly~~G--~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~---fedESFdiVI 119 (482)
T KOG2352|consen 45 LSPSDFKILQLGCGNSELSEHLYKNG--FEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLV---FEDESFDIVI 119 (482)
T ss_pred hchhhceeEeecCCCCHHHHHHHhcC--CCCceeccccHHHHHHHHhccccCCcceEEEEecchhcc---CCCcceeEEE
Confidence 55666 99999999998888887652 336999999987765555555 44457888999988765 4567899998
Q ss_pred Ec----CCCchHHHHHHHHHhCCCcHHHHHHHHHHhh-cchhhhhh
Q 024665 219 SD----VAQPDQVCFLCLILFQPIVINNLQSVNNETK-GGIFEFLF 259 (264)
Q Consensus 219 ~d----~p~~~~~~~~~~~~l~~~~~~~l~~~~~~Lk-~g~f~~l~ 259 (264)
.- ....+....... ++ ....+.++.+.|+ +++|..+.
T Consensus 120 dkGtlDal~~de~a~~~~-~~---v~~~~~eVsrvl~~~gk~~svt 161 (482)
T KOG2352|consen 120 DKGTLDALFEDEDALLNT-AH---VSNMLDEVSRVLAPGGKYISVT 161 (482)
T ss_pred ecCccccccCCchhhhhh-HH---hhHHHhhHHHHhccCCEEEEEE
Confidence 52 222222222211 11 3445666777777 66665443
No 288
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=91.47 E-value=0.25 Score=37.99 Aligned_cols=49 Identities=16% Similarity=0.190 Sum_probs=33.8
Q ss_pred HHHHHHhcccccCC-CCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChH
Q 024665 128 LAAAVLGGVDNIWI-KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHR 179 (264)
Q Consensus 128 l~~~il~~l~~~~l-~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~ 179 (264)
+++.++...+++.. .+-...+|||||+|-++..|... +- .=+++|...+
T Consensus 42 IAAyLi~LW~~~~~~~~~~~FVDlGCGNGLLV~IL~~E-Gy--~G~GiD~R~R 91 (112)
T PF07757_consen 42 IAAYLIELWRDMYGEQKFQGFVDLGCGNGLLVYILNSE-GY--PGWGIDARRR 91 (112)
T ss_pred HHHHHHHHHhcccCCCCCCceEEccCCchHHHHHHHhC-CC--Cccccccccc
Confidence 55555555554433 35567999999999999999876 22 3488887643
No 289
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=90.34 E-value=1.2 Score=39.40 Aligned_cols=75 Identities=15% Similarity=0.038 Sum_probs=43.0
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHH--HHHHHHHhhc-----CCCeEEEEcCCCCchhhcccCCC-c
Q 024665 143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRS--GRDLVNMAKK-----RTNVIPIIEDARHPAKYRMLVGM-V 214 (264)
Q Consensus 143 ~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~--~~~l~~~a~~-----~~nV~~i~~D~~~~~~~~~~~~~-f 214 (264)
...+||++|+|+|...+.+|.. ...+|.--|+...+ ++.+...+.. ...|.+..-+..++.......+. +
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~--~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~ 163 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALL--LGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPF 163 (248)
T ss_pred cceeEEEecCCccHHHHHHHHH--hcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcc
Confidence 3557999999999777777765 34577777776322 2222111111 11556655555554322223345 8
Q ss_pred cEEEE
Q 024665 215 DVIFS 219 (264)
Q Consensus 215 D~V~~ 219 (264)
|+|++
T Consensus 164 Dlila 168 (248)
T KOG2793|consen 164 DLILA 168 (248)
T ss_pred cEEEE
Confidence 99985
No 290
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=90.32 E-value=0.26 Score=47.38 Aligned_cols=93 Identities=19% Similarity=0.110 Sum_probs=64.6
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHH---HHHhhcCCCeEEEEcCCCCch-hhcccCCCccEEE
Q 024665 143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDL---VNMAKKRTNVIPIIEDARHPA-KYRMLVGMVDVIF 218 (264)
Q Consensus 143 ~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l---~~~a~~~~nV~~i~~D~~~~~-~~~~~~~~fD~V~ 218 (264)
+.-+|||.-|++|.-++..|..+..-.+|+|.|.+++++... ++.|....-|++.+.|+...- ...+....||+|=
T Consensus 109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvID 188 (525)
T KOG1253|consen 109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVID 188 (525)
T ss_pred CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceEe
Confidence 456899999999999999999988778999999998775433 333333336788888886532 1123346899999
Q ss_pred EcCC-CchHHHHHHHHHh
Q 024665 219 SDVA-QPDQVCFLCLILF 235 (264)
Q Consensus 219 ~d~p-~~~~~~~~~~~~l 235 (264)
+||- .|......+.+++
T Consensus 189 LDPyGs~s~FLDsAvqav 206 (525)
T KOG1253|consen 189 LDPYGSPSPFLDSAVQAV 206 (525)
T ss_pred cCCCCCccHHHHHHHHHh
Confidence 9976 3444444444443
No 291
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=90.13 E-value=1.3 Score=42.97 Aligned_cols=79 Identities=16% Similarity=0.111 Sum_probs=47.0
Q ss_pred CCCEEEEEcccCChHHHHHHHHhC---CCCEEEEEeCChHHHHHHHHHhhc---C-CCeEEEEcCCCCchhhcccCCCcc
Q 024665 143 PGARVLYLGAASGTTVSHVSDIVG---PNGVVYAVEFSHRSGRDLVNMAKK---R-TNVIPIIEDARHPAKYRMLVGMVD 215 (264)
Q Consensus 143 ~g~~VLDlG~G~G~~s~~la~~~~---~~g~V~avD~s~~~~~~l~~~a~~---~-~nV~~i~~D~~~~~~~~~~~~~fD 215 (264)
|+..|.|.+||+|.+.......+. ....+|+.|....+....+..... . ......+.|-...+.+ ....+||
T Consensus 217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~~~~~~dtl~~~d~-~~~~~~D 295 (501)
T TIGR00497 217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFNIINADTLTTKEW-ENENGFE 295 (501)
T ss_pred CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccccCcccCCcCCCccc-cccccCC
Confidence 678999999999998876554432 224689999997663222221111 1 1223334454332211 1124699
Q ss_pred EEEEcCC
Q 024665 216 VIFSDVA 222 (264)
Q Consensus 216 ~V~~d~p 222 (264)
+|++|+|
T Consensus 296 ~v~~NpP 302 (501)
T TIGR00497 296 VVVSNPP 302 (501)
T ss_pred EEeecCC
Confidence 9999998
No 292
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=89.98 E-value=0.071 Score=51.26 Aligned_cols=67 Identities=15% Similarity=0.158 Sum_probs=40.0
Q ss_pred EEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHH-HHHHHHHhhcCCCeEEEEcCC-CCchhhcccCCCccEEEEc
Q 024665 146 RVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRS-GRDLVNMAKKRTNVIPIIEDA-RHPAKYRMLVGMVDVIFSD 220 (264)
Q Consensus 146 ~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~-~~~l~~~a~~~~nV~~i~~D~-~~~~~~~~~~~~fD~V~~d 220 (264)
.+||+|||+|+++.+|.++ .|+.+-+.+.- .+..++.|..+. |-.+.+-+ ++-.+ +....||+|.|-
T Consensus 120 ~~LDvGcG~aSF~a~l~~r-----~V~t~s~a~~d~~~~qvqfaleRG-vpa~~~~~~s~rLP--fp~~~fDmvHcs 188 (506)
T PF03141_consen 120 TALDVGCGVASFGAYLLER-----NVTTMSFAPNDEHEAQVQFALERG-VPAMIGVLGSQRLP--FPSNAFDMVHCS 188 (506)
T ss_pred EEEeccceeehhHHHHhhC-----CceEEEcccccCCchhhhhhhhcC-cchhhhhhcccccc--CCccchhhhhcc
Confidence 6999999999999999987 46666665321 112344554443 22222221 22112 356789999764
No 293
>PRK12829 short chain dehydrogenase; Provisional
Probab=89.79 E-value=4.7 Score=34.66 Aligned_cols=80 Identities=19% Similarity=0.214 Sum_probs=51.2
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcc-------cCC
Q 024665 141 IKPGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRM-------LVG 212 (264)
Q Consensus 141 l~~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~-------~~~ 212 (264)
..++.+||=.|+. |.+..++++.+ ....+|+.++.++...+++.+..... +++++..|+.+...... ...
T Consensus 8 ~~~~~~vlItGa~-g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~ 85 (264)
T PRK12829 8 PLDGLRVLVTGGA-SGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLPGA-KVTATVADVADPAQVERVFDTAVERFG 85 (264)
T ss_pred ccCCCEEEEeCCC-CcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcC-ceEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 4567899988886 55566555543 33457999999865544443332222 67899999988653211 124
Q ss_pred CccEEEEcCC
Q 024665 213 MVDVIFSDVA 222 (264)
Q Consensus 213 ~fD~V~~d~p 222 (264)
.+|+|+....
T Consensus 86 ~~d~vi~~ag 95 (264)
T PRK12829 86 GLDVLVNNAG 95 (264)
T ss_pred CCCEEEECCC
Confidence 6899998765
No 294
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=89.61 E-value=0.58 Score=43.69 Aligned_cols=94 Identities=13% Similarity=0.074 Sum_probs=63.2
Q ss_pred CCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHh---hcCCCeEEEEcCCCCchhhcccCCCccE
Q 024665 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMA---KKRTNVIPIIEDARHPAKYRMLVGMVDV 216 (264)
Q Consensus 140 ~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a---~~~~nV~~i~~D~~~~~~~~~~~~~fD~ 216 (264)
.++|+++++|++|+.+..+..++.. ....+++++.++.-+......+ ....+..++..|+.+.+ +.+..||.
T Consensus 107 ~~~~~~~~~~~~~g~~~~~~~i~~f--~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~---fedn~fd~ 181 (364)
T KOG1269|consen 107 SCFPGSKVLDVGTGVGGPSRYIAVF--KKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMP---FEDNTFDG 181 (364)
T ss_pred cCcccccccccCcCcCchhHHHHHh--ccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCC---CCccccCc
Confidence 4788999999999999999999987 4568999999953321111111 11223334788887755 34568898
Q ss_pred EEEc-----CCCchHHHHHHHHHhCCC
Q 024665 217 IFSD-----VAQPDQVCFLCLILFQPI 238 (264)
Q Consensus 217 V~~d-----~p~~~~~~~~~~~~l~~~ 238 (264)
|.+. .|.++.........++|+
T Consensus 182 v~~ld~~~~~~~~~~~y~Ei~rv~kpG 208 (364)
T KOG1269|consen 182 VRFLEVVCHAPDLEKVYAEIYRVLKPG 208 (364)
T ss_pred EEEEeecccCCcHHHHHHHHhcccCCC
Confidence 8643 335666666666677777
No 295
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=89.39 E-value=4 Score=34.58 Aligned_cols=79 Identities=14% Similarity=0.147 Sum_probs=50.4
Q ss_pred CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcc-------cCCCc
Q 024665 143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRM-------LVGMV 214 (264)
Q Consensus 143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~-------~~~~f 214 (264)
++++||=.|++ |.+...+++.+ ....+|+.++.++....++.+......+++++..|+++...... ....+
T Consensus 4 ~~~~vlItGa~-g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 82 (238)
T PRK05786 4 KGKKVAIIGVS-EGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKYGNIHYVVGDVSSTESARNVIEKAAKVLNAI 82 (238)
T ss_pred CCcEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEECCCCCHHHHHHHHHHHHHHhCCC
Confidence 35689999985 66666666554 33458999999865544443333323478999999988653211 12357
Q ss_pred cEEEEcCC
Q 024665 215 DVIFSDVA 222 (264)
Q Consensus 215 D~V~~d~p 222 (264)
|.|+.+..
T Consensus 83 d~ii~~ag 90 (238)
T PRK05786 83 DGLVVTVG 90 (238)
T ss_pred CEEEEcCC
Confidence 98887765
No 296
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=89.17 E-value=1.1 Score=39.80 Aligned_cols=72 Identities=14% Similarity=0.185 Sum_probs=47.5
Q ss_pred hcccccC-CCCCCEEEEEcccCChHHHHHHHHhC----CCCEEEEEeCC-hHHHHHHHHHh-hcCCCeEEEEcCCCCch
Q 024665 134 GGVDNIW-IKPGARVLYLGAASGTTVSHVSDIVG----PNGVVYAVEFS-HRSGRDLVNMA-KKRTNVIPIIEDARHPA 205 (264)
Q Consensus 134 ~~l~~~~-l~~g~~VLDlG~G~G~~s~~la~~~~----~~g~V~avD~s-~~~~~~l~~~a-~~~~nV~~i~~D~~~~~ 205 (264)
..+++.. +.+...++|+|||.|.+|..+++.+. +...++.||.. .++-.+..-.. ...+.++=+..|+.|+.
T Consensus 8 ~~l~~~~ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~K~D~~~~~~~~~~~~~R~riDI~dl~ 86 (259)
T PF05206_consen 8 GNLEQRGLLNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRHKADNKIRKDESEPKFERLRIDIKDLD 86 (259)
T ss_pred HHHHHcCCCCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccccchhhhhccCCCCceEEEEEEeeccc
Confidence 3333333 57888999999999999999999884 34579999986 44311211111 11135777788887764
No 297
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=89.16 E-value=2.4 Score=38.73 Aligned_cols=79 Identities=16% Similarity=0.077 Sum_probs=51.8
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCC-CEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEcC
Q 024665 143 PGARVLYLGAASGTTVSHVSDIVGPN-GVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDV 221 (264)
Q Consensus 143 ~g~~VLDlG~G~G~~s~~la~~~~~~-g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~ 221 (264)
.+++||=.|+ +|.+..++++.+-.. -+|++++.+......+.+......+++++..|+++..........+|+|+..+
T Consensus 9 ~~~~vLVtG~-~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~A 87 (353)
T PLN02896 9 ATGTYCVTGA-TGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWKEGDRLRLFRADLQEEGSFDEAVKGCDGVFHVA 87 (353)
T ss_pred CCCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhccCCeEEEEECCCCCHHHHHHHHcCCCEEEECC
Confidence 4568887775 788888888776433 37998887753322322221122478999999998754433345689998766
Q ss_pred C
Q 024665 222 A 222 (264)
Q Consensus 222 p 222 (264)
.
T Consensus 88 ~ 88 (353)
T PLN02896 88 A 88 (353)
T ss_pred c
Confidence 5
No 298
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.06 E-value=1.3 Score=36.22 Aligned_cols=39 Identities=18% Similarity=0.154 Sum_probs=31.3
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHH
Q 024665 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSG 181 (264)
Q Consensus 141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~ 181 (264)
-.|-.+.+|+|+|-|.+.+..++.. .-.-+++|+++-..
T Consensus 70 ~n~~GklvDlGSGDGRiVlaaar~g--~~~a~GvELNpwLV 108 (199)
T KOG4058|consen 70 GNPKGKLVDLGSGDGRIVLAAARCG--LRPAVGVELNPWLV 108 (199)
T ss_pred CCCCCcEEeccCCCceeehhhhhhC--CCcCCceeccHHHH
Confidence 3555689999999999999999873 33578999998653
No 299
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=88.97 E-value=0.46 Score=42.63 Aligned_cols=66 Identities=18% Similarity=0.140 Sum_probs=47.4
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCe-EEEEcCCCCchhhcccCCCccEEEE
Q 024665 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNV-IPIIEDARHPAKYRMLVGMVDVIFS 219 (264)
Q Consensus 141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV-~~i~~D~~~~~~~~~~~~~fD~V~~ 219 (264)
...++.+||+|||.|-.+.. .|...+++.|++... +.-++ +.+. .....|+.+.+. ....||.+++
T Consensus 43 ~~~gsv~~d~gCGngky~~~-----~p~~~~ig~D~c~~l----~~~ak-~~~~~~~~~ad~l~~p~---~~~s~d~~ls 109 (293)
T KOG1331|consen 43 QPTGSVGLDVGCGNGKYLGV-----NPLCLIIGCDLCTGL----LGGAK-RSGGDNVCRADALKLPF---REESFDAALS 109 (293)
T ss_pred cCCcceeeecccCCcccCcC-----CCcceeeecchhhhh----ccccc-cCCCceeehhhhhcCCC---CCCccccchh
Confidence 34589999999999986643 256689999999743 44443 3344 688889888652 3468998875
No 300
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=88.92 E-value=2.9 Score=38.15 Aligned_cols=136 Identities=16% Similarity=0.212 Sum_probs=73.9
Q ss_pred ceecceE-eCCcchHHHHHHHh----cccccCC----------CCCCEEEEEcccCChHHHHHHHHh-------------
Q 024665 114 TKVEYRI-WNPFRSKLAAAVLG----GVDNIWI----------KPGARVLYLGAASGTTVSHVSDIV------------- 165 (264)
Q Consensus 114 ~~~~yr~-~~p~~s~l~~~il~----~l~~~~l----------~~g~~VLDlG~G~G~~s~~la~~~------------- 165 (264)
...-|.. |.|.+.--.+.++. .++.+.. ++..+||-||-|.|.=...+|..+
T Consensus 42 ~L~AYA~RWSPsRAL~Yaslf~~l~~~l~~~~~~~~~~~~~~~~~~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~ 121 (315)
T PF11312_consen 42 KLEAYAARWSPSRALAYASLFASLKEHLELLSCPEDESDEDEEKKSLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPS 121 (315)
T ss_pred hhhhheeccCHHHHHHHHHHHHHHHHHHHhhccccccccccccccCceEEEECCChHHHHHHHHHHHhhcccccCCcccc
Confidence 4556776 99987432222222 2222211 223699999999998777777666
Q ss_pred ------CCCCEEEEEeCCh--HHHHHHHHHhhcC-------------------CCeEEEEcCCCCchhhcccCCCccEEE
Q 024665 166 ------GPNGVVYAVEFSH--RSGRDLVNMAKKR-------------------TNVIPIIEDARHPAKYRMLVGMVDVIF 218 (264)
Q Consensus 166 ------~~~g~V~avD~s~--~~~~~l~~~a~~~-------------------~nV~~i~~D~~~~~~~~~~~~~fD~V~ 218 (264)
.+...|++||+.+ .++..+....... .++.|.+.|+...... ...-++
T Consensus 122 ~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~~~~~~~~~~~~~F~~~DvL~~~~~-----~l~~ll 196 (315)
T PF11312_consen 122 GVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAANWPLIEPDRFNVSFTQQDVLSLSED-----DLKSLL 196 (315)
T ss_pred cccccCCCcceEEEEEecChHHHHHHHHHhccCCCCccccccccccccCCccceeeeEEecccccCChH-----HHHHHh
Confidence 0124899999983 3333332211111 1788888888765421 000011
Q ss_pred EcCCCch-HHHHHHHHHhCCC----cHHHHHHHHHHhhcchh
Q 024665 219 SDVAQPD-QVCFLCLILFQPI----VINNLQSVNNETKGGIF 255 (264)
Q Consensus 219 ~d~p~~~-~~~~~~~~~l~~~----~~~~l~~~~~~Lk~g~f 255 (264)
. .+.|+ ......+|.+... +...+..+...++.|.+
T Consensus 197 ~-~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~Gsl 237 (315)
T PF11312_consen 197 G-PPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSL 237 (315)
T ss_pred c-cchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcE
Confidence 1 11111 3455667777543 66667777777774433
No 301
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=88.84 E-value=1 Score=41.47 Aligned_cols=65 Identities=14% Similarity=0.113 Sum_probs=47.0
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC-CCeEEEEcCCCCchhhcccCCCccEEEE
Q 024665 143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR-TNVIPIIEDARHPAKYRMLVGMVDVIFS 219 (264)
Q Consensus 143 ~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~-~nV~~i~~D~~~~~~~~~~~~~fD~V~~ 219 (264)
.-...+|+|.|.|.++-.+..++ | +|-+++++...+ ++.+... +.|+.+.+|..+- ..+.|+|++
T Consensus 177 ~v~~avDvGgGiG~v~k~ll~~f-p--~ik~infdlp~v---~~~a~~~~~gV~~v~gdmfq~------~P~~daI~m 242 (342)
T KOG3178|consen 177 GVNVAVDVGGGIGRVLKNLLSKY-P--HIKGINFDLPFV---LAAAPYLAPGVEHVAGDMFQD------TPKGDAIWM 242 (342)
T ss_pred cCceEEEcCCcHhHHHHHHHHhC-C--CCceeecCHHHH---HhhhhhhcCCcceeccccccc------CCCcCeEEE
Confidence 34789999999999999999864 3 588899995432 3333333 5688899997653 246778875
No 302
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=88.71 E-value=3 Score=37.31 Aligned_cols=35 Identities=26% Similarity=0.245 Sum_probs=30.2
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHH
Q 024665 143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRS 180 (264)
Q Consensus 143 ~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~ 180 (264)
...+||=-|||.|.++..+|.+ .-.|.++|+|--|
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~---G~~~~gnE~S~~M 90 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKL---GYAVQGNEFSYFM 90 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhc---cceEEEEEchHHH
Confidence 3568999999999999999988 3489999999655
No 303
>PRK06138 short chain dehydrogenase; Provisional
Probab=88.70 E-value=6.3 Score=33.58 Aligned_cols=78 Identities=12% Similarity=0.142 Sum_probs=48.4
Q ss_pred CCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhccc-------CCCcc
Q 024665 144 GARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRML-------VGMVD 215 (264)
Q Consensus 144 g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~-------~~~fD 215 (264)
+.+||=.||. |.+..++++.+ ....+|+.++.+.....+..+......++.++..|+.+....... ...+|
T Consensus 5 ~k~~lItG~s-g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~id 83 (252)
T PRK06138 5 GRVAIVTGAG-SGIGRATAKLFAREGARVVVADRDAEAAERVAAAIAAGGRAFARQGDVGSAEAVEALVDFVAARWGRLD 83 (252)
T ss_pred CcEEEEeCCC-chHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCC
Confidence 4577877774 56666655543 334589999988654433333222234689999999886532111 14789
Q ss_pred EEEEcCC
Q 024665 216 VIFSDVA 222 (264)
Q Consensus 216 ~V~~d~p 222 (264)
+|+.+..
T Consensus 84 ~vi~~ag 90 (252)
T PRK06138 84 VLVNNAG 90 (252)
T ss_pred EEEECCC
Confidence 9998765
No 304
>PRK05872 short chain dehydrogenase; Provisional
Probab=88.70 E-value=5.7 Score=35.36 Aligned_cols=79 Identities=18% Similarity=0.257 Sum_probs=48.5
Q ss_pred CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcc-------cCCCc
Q 024665 143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRM-------LVGMV 214 (264)
Q Consensus 143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~-------~~~~f 214 (264)
.+.+||-.|+.+|. ...+++.+ ....+|+.++.++..++++.+.......+..+..|+.+...... ..+.+
T Consensus 8 ~gk~vlItGas~gI-G~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i 86 (296)
T PRK05872 8 AGKVVVVTGAARGI-GAELARRLHARGAKLALVDLEEAELAALAAELGGDDRVLTVVADVTDLAAMQAAAEEAVERFGGI 86 (296)
T ss_pred CCCEEEEECCCchH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 46788888866554 44444433 23458999999876554444433323356677799988642211 12578
Q ss_pred cEEEEcCC
Q 024665 215 DVIFSDVA 222 (264)
Q Consensus 215 D~V~~d~p 222 (264)
|+|+.+..
T Consensus 87 d~vI~nAG 94 (296)
T PRK05872 87 DVVVANAG 94 (296)
T ss_pred CEEEECCC
Confidence 99998875
No 305
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=88.67 E-value=0.88 Score=44.26 Aligned_cols=75 Identities=24% Similarity=0.240 Sum_probs=54.3
Q ss_pred CEEEEEcccCChHHH---HHHHHhCCCCEEEEEeCChHHHHHHHHHhhc--CCCeEEEEcCCCCchhhcccCCCccEEEE
Q 024665 145 ARVLYLGAASGTTVS---HVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK--RTNVIPIIEDARHPAKYRMLVGMVDVIFS 219 (264)
Q Consensus 145 ~~VLDlG~G~G~~s~---~la~~~~~~g~V~avD~s~~~~~~l~~~a~~--~~nV~~i~~D~~~~~~~~~~~~~fD~V~~ 219 (264)
..|+=+|+|-|-+.- .+|+....+-++||||.+|.++..+...+.. ...|++|..|+++..+ ..++.|++++
T Consensus 369 tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~~DMR~w~a---p~eq~DI~VS 445 (649)
T KOG0822|consen 369 TVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIISSDMRKWNA---PREQADIIVS 445 (649)
T ss_pred EEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEeccccccCC---chhhccchHH
Confidence 357889999998654 4455555667899999999887666554432 2379999999998762 1368899987
Q ss_pred cCC
Q 024665 220 DVA 222 (264)
Q Consensus 220 d~p 222 (264)
...
T Consensus 446 ELL 448 (649)
T KOG0822|consen 446 ELL 448 (649)
T ss_pred Hhh
Confidence 544
No 306
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=88.44 E-value=1.7 Score=40.41 Aligned_cols=58 Identities=19% Similarity=0.133 Sum_probs=42.7
Q ss_pred hHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhC-------CCCEEEEEeCChHHHHH
Q 024665 126 SKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVG-------PNGVVYAVEFSHRSGRD 183 (264)
Q Consensus 126 s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~-------~~g~V~avD~s~~~~~~ 183 (264)
..++..++..++++.....-.++++|+|.|.+...++.... ...+++-||.|++..+.
T Consensus 60 ella~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~ 124 (370)
T COG1565 60 ELLAEQFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRAR 124 (370)
T ss_pred HHHHHHHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHH
Confidence 34555566666665555566899999999999998876652 25689999999977443
No 307
>PRK06940 short chain dehydrogenase; Provisional
Probab=88.25 E-value=6.6 Score=34.53 Aligned_cols=75 Identities=16% Similarity=0.209 Sum_probs=49.0
Q ss_pred EEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc-CCCeEEEEcCCCCchhhccc------CCCccEEE
Q 024665 146 RVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK-RTNVIPIIEDARHPAKYRML------VGMVDVIF 218 (264)
Q Consensus 146 ~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~-~~nV~~i~~D~~~~~~~~~~------~~~fD~V~ 218 (264)
.||=-|+ +.+..++++.+....+|+.++.++..++++.+.... ..++.++..|+.+....... .+.+|+|+
T Consensus 4 ~~lItGa--~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~i~~~~~~~~~~g~id~li 81 (275)
T PRK06940 4 VVVVIGA--GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAGFDVSTQEVDVSSRESVKALAATAQTLGPVTGLV 81 (275)
T ss_pred EEEEECC--ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHhcCCCCEEE
Confidence 4555554 478888888876556899999986544443333222 23688899999886432111 24689999
Q ss_pred EcCC
Q 024665 219 SDVA 222 (264)
Q Consensus 219 ~d~p 222 (264)
.++.
T Consensus 82 ~nAG 85 (275)
T PRK06940 82 HTAG 85 (275)
T ss_pred ECCC
Confidence 8876
No 308
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=88.15 E-value=1.2 Score=38.48 Aligned_cols=59 Identities=19% Similarity=0.109 Sum_probs=38.6
Q ss_pred CEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEc
Q 024665 145 ARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSD 220 (264)
Q Consensus 145 ~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d 220 (264)
-++|||||-+-...+.....+ .|++||+++. .-.+++.|..+.+.-....++||+|.+.
T Consensus 53 lrlLEVGals~~N~~s~~~~f----dvt~IDLns~-------------~~~I~qqDFm~rplp~~~~e~FdvIs~S 111 (219)
T PF11968_consen 53 LRLLEVGALSTDNACSTSGWF----DVTRIDLNSQ-------------HPGILQQDFMERPLPKNESEKFDVISLS 111 (219)
T ss_pred ceEEeecccCCCCcccccCce----eeEEeecCCC-------------CCCceeeccccCCCCCCcccceeEEEEE
Confidence 589999999776555444332 5999999851 1136677877743211234689998765
No 309
>PRK07454 short chain dehydrogenase; Provisional
Probab=87.95 E-value=9.8 Score=32.29 Aligned_cols=79 Identities=16% Similarity=0.086 Sum_probs=49.9
Q ss_pred CCCEEEEEcccCChHHHHHHHHhC-CCCEEEEEeCChHHHHHHHHHhhc-CCCeEEEEcCCCCchhhccc-------CCC
Q 024665 143 PGARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKK-RTNVIPIIEDARHPAKYRML-------VGM 213 (264)
Q Consensus 143 ~g~~VLDlG~G~G~~s~~la~~~~-~~g~V~avD~s~~~~~~l~~~a~~-~~nV~~i~~D~~~~~~~~~~-------~~~ 213 (264)
...+||=.|+ +|.+...+++.+- ...+|+.++.++...+++.+.... ..++.++..|+++....... ...
T Consensus 5 ~~k~vlItG~-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 83 (241)
T PRK07454 5 SMPRALITGA-SSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTGVKAAAYSIDLSNPEAIAPGIAELLEQFGC 83 (241)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 4457888886 5666666665543 334899999986544444333222 23788999999886532111 135
Q ss_pred ccEEEEcCC
Q 024665 214 VDVIFSDVA 222 (264)
Q Consensus 214 fD~V~~d~p 222 (264)
.|+|+.++.
T Consensus 84 id~lv~~ag 92 (241)
T PRK07454 84 PDVLINNAG 92 (241)
T ss_pred CCEEEECCC
Confidence 899998765
No 310
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=87.90 E-value=1.1 Score=39.41 Aligned_cols=39 Identities=21% Similarity=0.146 Sum_probs=30.1
Q ss_pred CEEEEEcccCChHHHHHHHHhCCC-------CEEEEEeCChHHHHH
Q 024665 145 ARVLYLGAASGTTVSHVSDIVGPN-------GVVYAVEFSHRSGRD 183 (264)
Q Consensus 145 ~~VLDlG~G~G~~s~~la~~~~~~-------g~V~avD~s~~~~~~ 183 (264)
-+|+|+|+|+|.++..+++.+... .+++-||.|+.+.+.
T Consensus 20 ~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~ 65 (252)
T PF02636_consen 20 LRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRER 65 (252)
T ss_dssp EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHH
T ss_pred cEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHH
Confidence 589999999999999999877632 589999999766433
No 311
>PRK05867 short chain dehydrogenase; Provisional
Probab=87.83 E-value=10 Score=32.57 Aligned_cols=79 Identities=18% Similarity=0.212 Sum_probs=49.4
Q ss_pred CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhhc-CCCeEEEEcCCCCchhhcc-------cCCC
Q 024665 143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKK-RTNVIPIIEDARHPAKYRM-------LVGM 213 (264)
Q Consensus 143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~~-~~nV~~i~~D~~~~~~~~~-------~~~~ 213 (264)
.+.+||=.|+.+|. ...+++.+ ....+|+.++.++...+++.+.... ..++.++..|+.+...... ..+.
T Consensus 8 ~~k~vlVtGas~gI-G~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 86 (253)
T PRK05867 8 HGKRALITGASTGI-GKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSGGKVVPVCCDVSQHQQVTSMLDQVTAELGG 86 (253)
T ss_pred CCCEEEEECCCchH-HHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 46789988886654 44444333 2345899999986555444443322 2368889999988653211 1247
Q ss_pred ccEEEEcCC
Q 024665 214 VDVIFSDVA 222 (264)
Q Consensus 214 fD~V~~d~p 222 (264)
+|+++.++.
T Consensus 87 id~lv~~ag 95 (253)
T PRK05867 87 IDIAVCNAG 95 (253)
T ss_pred CCEEEECCC
Confidence 899998765
No 312
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=87.68 E-value=1.7 Score=40.67 Aligned_cols=37 Identities=27% Similarity=0.123 Sum_probs=30.6
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHH
Q 024665 142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRS 180 (264)
Q Consensus 142 ~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~ 180 (264)
-+=+.|+|+|+|.|.++..|+-.. .-.|+|||-|+.+
T Consensus 152 ~gi~~vvD~GaG~G~LSr~lSl~y--~lsV~aIegsq~~ 188 (476)
T KOG2651|consen 152 TGIDQVVDVGAGQGHLSRFLSLGY--GLSVKAIEGSQRL 188 (476)
T ss_pred cCCCeeEEcCCCchHHHHHHhhcc--CceEEEeccchHH
Confidence 344679999999999999999764 4589999999654
No 313
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=87.65 E-value=2.6 Score=38.17 Aligned_cols=77 Identities=13% Similarity=0.088 Sum_probs=49.4
Q ss_pred CCEEEEEcccCChHHHHHHHHhCCC---CEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEc
Q 024665 144 GARVLYLGAASGTTVSHVSDIVGPN---GVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSD 220 (264)
Q Consensus 144 g~~VLDlG~G~G~~s~~la~~~~~~---g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d 220 (264)
+.+||=.|+ +|.+..++++.+-.. .+|+.++.+......+.... ...+++++.+|+++..........+|+||..
T Consensus 4 ~k~vLVTGa-tG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~-~~~~~~~v~~Dl~d~~~l~~~~~~iD~Vih~ 81 (324)
T TIGR03589 4 NKSILITGG-TGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKF-PAPCLRFFIGDVRDKERLTRALRGVDYVVHA 81 (324)
T ss_pred CCEEEEeCC-CCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHh-CCCcEEEEEccCCCHHHHHHHHhcCCEEEEC
Confidence 567886665 688888887765432 47888887643222222211 1247899999999976443334568999976
Q ss_pred CC
Q 024665 221 VA 222 (264)
Q Consensus 221 ~p 222 (264)
+.
T Consensus 82 Ag 83 (324)
T TIGR03589 82 AA 83 (324)
T ss_pred cc
Confidence 54
No 314
>PRK07063 short chain dehydrogenase; Provisional
Probab=87.65 E-value=8.9 Score=33.01 Aligned_cols=79 Identities=16% Similarity=0.243 Sum_probs=49.6
Q ss_pred CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhhc---CCCeEEEEcCCCCchhhccc-------C
Q 024665 143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKK---RTNVIPIIEDARHPAKYRML-------V 211 (264)
Q Consensus 143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~~---~~nV~~i~~D~~~~~~~~~~-------~ 211 (264)
.+.+||=.|+.+|. ...+++.+ ....+|+.++.++...+++.+.... ..++.++..|+.+....... .
T Consensus 6 ~~k~vlVtGas~gI-G~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 84 (260)
T PRK07063 6 AGKVALVTGAAQGI-GAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEAF 84 (260)
T ss_pred CCCEEEEECCCchH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 35688988886554 44444433 3345899999986554444443322 23688999999886532111 2
Q ss_pred CCccEEEEcCC
Q 024665 212 GMVDVIFSDVA 222 (264)
Q Consensus 212 ~~fD~V~~d~p 222 (264)
+.+|+++.+..
T Consensus 85 g~id~li~~ag 95 (260)
T PRK07063 85 GPLDVLVNNAG 95 (260)
T ss_pred CCCcEEEECCC
Confidence 46899998765
No 315
>PRK06139 short chain dehydrogenase; Provisional
Probab=87.60 E-value=6.3 Score=36.04 Aligned_cols=79 Identities=18% Similarity=0.245 Sum_probs=49.3
Q ss_pred CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhhc-CCCeEEEEcCCCCchhhccc-------CCC
Q 024665 143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKK-RTNVIPIIEDARHPAKYRML-------VGM 213 (264)
Q Consensus 143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~~-~~nV~~i~~D~~~~~~~~~~-------~~~ 213 (264)
++.+||=.|+.+| +...+++.+ ....+|+.++.++..++++.+.... ..++.++..|+.+......+ .+.
T Consensus 6 ~~k~vlITGAs~G-IG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 84 (330)
T PRK06139 6 HGAVVVITGASSG-IGQATAEAFARRGARLVLAARDEEALQAVAEECRALGAEVLVVPTDVTDADQVKALATQAASFGGR 84 (330)
T ss_pred CCCEEEEcCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHhcCC
Confidence 4567887777554 444444333 2345899999987655555444332 23688889999886532111 257
Q ss_pred ccEEEEcCC
Q 024665 214 VDVIFSDVA 222 (264)
Q Consensus 214 fD~V~~d~p 222 (264)
+|++|.+..
T Consensus 85 iD~lVnnAG 93 (330)
T PRK06139 85 IDVWVNNVG 93 (330)
T ss_pred CCEEEECCC
Confidence 899998865
No 316
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=87.35 E-value=2.6 Score=42.30 Aligned_cols=76 Identities=16% Similarity=0.032 Sum_probs=47.2
Q ss_pred CCEEEEEcccCChHHHHHHHHh------CC-----CCEEEEEeCChHHHHHHHHHh-------------h--------c-
Q 024665 144 GARVLYLGAASGTTVSHVSDIV------GP-----NGVVYAVEFSHRSGRDLVNMA-------------K--------K- 190 (264)
Q Consensus 144 g~~VLDlG~G~G~~s~~la~~~------~~-----~g~V~avD~s~~~~~~l~~~a-------------~--------~- 190 (264)
.-+|||+|-|+|.-.+...+.. .+ .-+++++|..+-..+++.+.. . .
T Consensus 58 ~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~ 137 (662)
T PRK01747 58 RFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGC 137 (662)
T ss_pred cEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCc
Confidence 3589999999999777776655 12 247999997531111111100 0 0
Q ss_pred ------CC--CeEEEEcCCCCchhhcccCCCccEEEEcC
Q 024665 191 ------RT--NVIPIIEDARHPAKYRMLVGMVDVIFSDV 221 (264)
Q Consensus 191 ------~~--nV~~i~~D~~~~~~~~~~~~~fD~V~~d~ 221 (264)
.. +++.+.+|+++..+ .+...||+|++|.
T Consensus 138 ~~~~~~~~~~~l~l~~gd~~~~~~--~~~~~~d~~~lD~ 174 (662)
T PRK01747 138 HRLLFDDGRVTLDLWFGDANELLP--QLDARADAWFLDG 174 (662)
T ss_pred eEEEecCCcEEEEEEecCHHHHHH--hccccccEEEeCC
Confidence 01 45678899887543 2335799999995
No 317
>PRK12939 short chain dehydrogenase; Provisional
Probab=87.13 E-value=9.9 Score=32.26 Aligned_cols=79 Identities=18% Similarity=0.226 Sum_probs=49.8
Q ss_pred CCCEEEEEcccCChHHHHHHHHhC-CCCEEEEEeCChHHHHHHHHHhh-cCCCeEEEEcCCCCchhhccc-------CCC
Q 024665 143 PGARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAK-KRTNVIPIIEDARHPAKYRML-------VGM 213 (264)
Q Consensus 143 ~g~~VLDlG~G~G~~s~~la~~~~-~~g~V~avD~s~~~~~~l~~~a~-~~~nV~~i~~D~~~~~~~~~~-------~~~ 213 (264)
++.+||=.|+ +|.+..+++..+. ...+|+.++.+++...++.+... ...++.+++.|+.+......+ ...
T Consensus 6 ~~~~vlItGa-~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 84 (250)
T PRK12939 6 AGKRALVTGA-ARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAGGRAHAIAADLADPASVQRFFDAAAAALGG 84 (250)
T ss_pred CCCEEEEeCC-CChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 4677886665 6777777776553 23578999888654433333222 224789999999886532111 146
Q ss_pred ccEEEEcCC
Q 024665 214 VDVIFSDVA 222 (264)
Q Consensus 214 fD~V~~d~p 222 (264)
+|+|+.+..
T Consensus 85 id~vi~~ag 93 (250)
T PRK12939 85 LDGLVNNAG 93 (250)
T ss_pred CCEEEECCC
Confidence 899998765
No 318
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=87.09 E-value=9.9 Score=32.42 Aligned_cols=78 Identities=13% Similarity=0.168 Sum_probs=49.5
Q ss_pred CCEEEEEcccCChHHHHHHHHhCC-CCEEEEEeCChHHHHHHHHHhh-cCCCeEEEEcCCCCchhhccc-------CCCc
Q 024665 144 GARVLYLGAASGTTVSHVSDIVGP-NGVVYAVEFSHRSGRDLVNMAK-KRTNVIPIIEDARHPAKYRML-------VGMV 214 (264)
Q Consensus 144 g~~VLDlG~G~G~~s~~la~~~~~-~g~V~avD~s~~~~~~l~~~a~-~~~nV~~i~~D~~~~~~~~~~-------~~~f 214 (264)
+.+||=.|+ +|.+..++++.+-. ..+|+.++.++...+.+..... ...+++++..|+.+....... .+.+
T Consensus 4 ~~~vlItG~-sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~ 82 (258)
T PRK12429 4 GKVALVTGA-ASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAGGKAIGVAMDVTDEEAINAGIDYAVETFGGV 82 (258)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 456775555 67778887776543 3479999998655434333322 234788999999886532111 2368
Q ss_pred cEEEEcCC
Q 024665 215 DVIFSDVA 222 (264)
Q Consensus 215 D~V~~d~p 222 (264)
|+|+.+..
T Consensus 83 d~vi~~a~ 90 (258)
T PRK12429 83 DILVNNAG 90 (258)
T ss_pred CEEEECCC
Confidence 99998765
No 319
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=86.97 E-value=3.4 Score=36.37 Aligned_cols=82 Identities=7% Similarity=-0.073 Sum_probs=44.4
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCC----CeEEEEcCCCC-ch-hhcccCCCcc
Q 024665 142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRT----NVIPIIEDARH-PA-KYRMLVGMVD 215 (264)
Q Consensus 142 ~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~----nV~~i~~D~~~-~~-~~~~~~~~fD 215 (264)
.+.-++||+|.|.=.+--.+-.+.. .=..++.|+++-+++.+......++ .|+.....-.+ +. ...-..+.||
T Consensus 77 ~~~i~~LDIGvGAnCIYPliG~~eY-gwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd 155 (292)
T COG3129 77 GKNIRILDIGVGANCIYPLIGVHEY-GWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYD 155 (292)
T ss_pred cCceEEEeeccCcccccccccceee-cceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccccccccceee
Confidence 4667899999987665444433321 1257788888655433333222222 34443332221 11 1101246899
Q ss_pred EEEEcCCCc
Q 024665 216 VIFSDVAQP 224 (264)
Q Consensus 216 ~V~~d~p~~ 224 (264)
+++||||..
T Consensus 156 ~tlCNPPFh 164 (292)
T COG3129 156 ATLCNPPFH 164 (292)
T ss_pred eEecCCCcc
Confidence 999999943
No 320
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=86.88 E-value=11 Score=31.98 Aligned_cols=78 Identities=12% Similarity=0.162 Sum_probs=48.3
Q ss_pred CCEEEEEcccCChHHHHHHHHhC-CCCEEEEEeCChHHHHHHHHHhhc-CCCeEEEEcCCCCchhhccc-------CCCc
Q 024665 144 GARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKK-RTNVIPIIEDARHPAKYRML-------VGMV 214 (264)
Q Consensus 144 g~~VLDlG~G~G~~s~~la~~~~-~~g~V~avD~s~~~~~~l~~~a~~-~~nV~~i~~D~~~~~~~~~~-------~~~f 214 (264)
+.+||=.|+. |.+...++..+- ...+|+.++.++....++.+.... ..++.++..|+.+....... ...+
T Consensus 3 ~~~ilItGas-~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 81 (250)
T TIGR03206 3 DKTAIVTGGG-GGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAKGGNAQAFACDITDRDSVDTAVAAAEQALGPV 81 (250)
T ss_pred CCEEEEeCCC-ChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 5678878764 555665555443 334899999886554444333222 23789999999875422111 2368
Q ss_pred cEEEEcCC
Q 024665 215 DVIFSDVA 222 (264)
Q Consensus 215 D~V~~d~p 222 (264)
|+|+.+..
T Consensus 82 d~vi~~ag 89 (250)
T TIGR03206 82 DVLVNNAG 89 (250)
T ss_pred CEEEECCC
Confidence 99988775
No 321
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=86.49 E-value=4.6 Score=40.05 Aligned_cols=83 Identities=18% Similarity=0.102 Sum_probs=53.6
Q ss_pred cCCCCCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhh----------cCCCeEEEEcCCCCchhh
Q 024665 139 IWIKPGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAK----------KRTNVIPIIEDARHPAKY 207 (264)
Q Consensus 139 ~~l~~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~----------~~~nV~~i~~D~~~~~~~ 207 (264)
...+.+.+||=.|+ +|.+..++++.+ ....+|++++.+...+..+.+... ...+++++.+|+.+....
T Consensus 75 ~~~~~gKvVLVTGA-TGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI 153 (576)
T PLN03209 75 LDTKDEDLAFVAGA-TGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQI 153 (576)
T ss_pred cccCCCCEEEEECC-CCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHH
Confidence 34778888887777 466777776554 334579999888544333322111 013689999999986543
Q ss_pred cccCCCccEEEEcCC
Q 024665 208 RMLVGMVDVIFSDVA 222 (264)
Q Consensus 208 ~~~~~~fD~V~~d~p 222 (264)
......+|+||+++.
T Consensus 154 ~~aLggiDiVVn~AG 168 (576)
T PLN03209 154 GPALGNASVVICCIG 168 (576)
T ss_pred HHHhcCCCEEEEccc
Confidence 333467899998765
No 322
>PTZ00357 methyltransferase; Provisional
Probab=86.48 E-value=2.8 Score=42.34 Aligned_cols=77 Identities=19% Similarity=0.302 Sum_probs=48.4
Q ss_pred EEEEEcccCChHHHHHH---HHhCCCCEEEEEeCChHHH-HHHHHHhhc----C------CCeEEEEcCCCCchhh----
Q 024665 146 RVLYLGAASGTTVSHVS---DIVGPNGVVYAVEFSHRSG-RDLVNMAKK----R------TNVIPIIEDARHPAKY---- 207 (264)
Q Consensus 146 ~VLDlG~G~G~~s~~la---~~~~~~g~V~avD~s~~~~-~~l~~~a~~----~------~nV~~i~~D~~~~~~~---- 207 (264)
.|+=+|||-|-+..... +..+-.-+|||||.++.++ -.+...... . ..|++|+.|+++...-
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~ 782 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG 782 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence 58999999999765544 4444456899999995432 112221111 1 1389999999986421
Q ss_pred ----cccCCCccEEEEcCC
Q 024665 208 ----RMLVGMVDVIFSDVA 222 (264)
Q Consensus 208 ----~~~~~~fD~V~~d~p 222 (264)
....+++|+||+...
T Consensus 783 s~~~P~~~gKaDIVVSELL 801 (1072)
T PTZ00357 783 SLTLPADFGLCDLIVSELL 801 (1072)
T ss_pred cccccccccccceehHhhh
Confidence 011237999998654
No 323
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=86.45 E-value=2.7 Score=41.32 Aligned_cols=82 Identities=7% Similarity=0.035 Sum_probs=53.9
Q ss_pred ccCChHHHHHHHHhCCC-CEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhc-ccCCCccEEEEcCCCchHHH-
Q 024665 152 AASGTTVSHVSDIVGPN-GVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYR-MLVGMVDVIFSDVAQPDQVC- 228 (264)
Q Consensus 152 ~G~G~~s~~la~~~~~~-g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~-~~~~~fD~V~~d~p~~~~~~- 228 (264)
||.|.++..+++..... -.|+.+|.+++..++ ++. ..+.++++|+++....+ ...+++|.|++..+..++..
T Consensus 423 ~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~----~~~-~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~~~~~~~~ 497 (558)
T PRK10669 423 VGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDE----LRE-RGIRAVLGNAANEEIMQLAHLDCARWLLLTIPNGYEAGE 497 (558)
T ss_pred ECCChHHHHHHHHHHHCCCCEEEEECCHHHHHH----HHH-CCCeEEEcCCCCHHHHHhcCccccCEEEEEcCChHHHHH
Confidence 67778888888876543 479999999855333 322 36889999999976432 22358998888777554432
Q ss_pred -HHHHHHhCCC
Q 024665 229 -FLCLILFQPI 238 (264)
Q Consensus 229 -~~~~~~l~~~ 238 (264)
........|.
T Consensus 498 iv~~~~~~~~~ 508 (558)
T PRK10669 498 IVASAREKRPD 508 (558)
T ss_pred HHHHHHHHCCC
Confidence 3334444444
No 324
>PRK06172 short chain dehydrogenase; Provisional
Probab=86.33 E-value=9.7 Score=32.58 Aligned_cols=79 Identities=15% Similarity=0.198 Sum_probs=48.0
Q ss_pred CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhh-cCCCeEEEEcCCCCchhhcc-------cCCC
Q 024665 143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAK-KRTNVIPIIEDARHPAKYRM-------LVGM 213 (264)
Q Consensus 143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~-~~~nV~~i~~D~~~~~~~~~-------~~~~ 213 (264)
.+.+||=.|+.+ .+...++..+ ....+|+.++.++.-.+++.+... ...++.+++.|+.+...... ..+.
T Consensus 6 ~~k~ilItGas~-~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~g~ 84 (253)
T PRK06172 6 SGKVALVTGGAA-GIGRATALAFAREGAKVVVADRDAAGGEETVALIREAGGEALFVACDVTRDAEVKALVEQTIAAYGR 84 (253)
T ss_pred CCCEEEEeCCCc-hHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHhCC
Confidence 456888888755 4444444333 334589999998644333333222 23478999999988642211 1246
Q ss_pred ccEEEEcCC
Q 024665 214 VDVIFSDVA 222 (264)
Q Consensus 214 fD~V~~d~p 222 (264)
+|+|+.+..
T Consensus 85 id~li~~ag 93 (253)
T PRK06172 85 LDYAFNNAG 93 (253)
T ss_pred CCEEEECCC
Confidence 799998765
No 325
>PRK09072 short chain dehydrogenase; Provisional
Probab=86.28 E-value=8.5 Score=33.28 Aligned_cols=79 Identities=15% Similarity=0.176 Sum_probs=48.6
Q ss_pred CCCEEEEEcccCChHHHHHHHH-hCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhccc------CCCcc
Q 024665 143 PGARVLYLGAASGTTVSHVSDI-VGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRML------VGMVD 215 (264)
Q Consensus 143 ~g~~VLDlG~G~G~~s~~la~~-~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~------~~~fD 215 (264)
++.+||=.|+.+|. ...++.. .....+|+.++.++...+++........++.++..|+.+......+ ...+|
T Consensus 4 ~~~~vlItG~s~~i-G~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~id 82 (263)
T PRK09072 4 KDKRVLLTGASGGI-GQALAEALAAAGARLLLVGRNAEKLEALAARLPYPGRHRWVVADLTSEAGREAVLARAREMGGIN 82 (263)
T ss_pred CCCEEEEECCCchH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHhcCCCC
Confidence 35678888777654 4433333 2334589999998655444433322234788999999886532111 24689
Q ss_pred EEEEcCC
Q 024665 216 VIFSDVA 222 (264)
Q Consensus 216 ~V~~d~p 222 (264)
+|+.+..
T Consensus 83 ~lv~~ag 89 (263)
T PRK09072 83 VLINNAG 89 (263)
T ss_pred EEEECCC
Confidence 9998765
No 326
>PLN02214 cinnamoyl-CoA reductase
Probab=86.17 E-value=5.4 Score=36.42 Aligned_cols=80 Identities=16% Similarity=0.175 Sum_probs=50.5
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCC-CEEEEEeCChHHHHH--HHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEE
Q 024665 142 KPGARVLYLGAASGTTVSHVSDIVGPN-GVVYAVEFSHRSGRD--LVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIF 218 (264)
Q Consensus 142 ~~g~~VLDlG~G~G~~s~~la~~~~~~-g~V~avD~s~~~~~~--l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~ 218 (264)
..+.+||=.|+ +|.+..++++.+-.. -+|+++..+...... +.+......+++++..|+++..........+|+||
T Consensus 8 ~~~~~vlVTGa-tGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vi 86 (342)
T PLN02214 8 PAGKTVCVTGA-GGYIASWIVKILLERGYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAAIDGCDGVF 86 (342)
T ss_pred CCCCEEEEECC-CcHHHHHHHHHHHHCcCEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHHHhcCCEEE
Confidence 34668887777 789998888765333 479888876432111 11111112368899999988654433345689998
Q ss_pred EcCC
Q 024665 219 SDVA 222 (264)
Q Consensus 219 ~d~p 222 (264)
..+.
T Consensus 87 h~A~ 90 (342)
T PLN02214 87 HTAS 90 (342)
T ss_pred EecC
Confidence 7765
No 327
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=85.90 E-value=9.5 Score=31.49 Aligned_cols=102 Identities=12% Similarity=0.013 Sum_probs=56.3
Q ss_pred EcccCChHHHHHHHHhCCCCEEEEEeCChH--HH------HHHHHHhhcCCCe-EEEEcCCCCchhhcc-cCCCccEEEE
Q 024665 150 LGAASGTTVSHVSDIVGPNGVVYAVEFSHR--SG------RDLVNMAKKRTNV-IPIIEDARHPAKYRM-LVGMVDVIFS 219 (264)
Q Consensus 150 lG~G~G~~s~~la~~~~~~g~V~avD~s~~--~~------~~l~~~a~~~~nV-~~i~~D~~~~~~~~~-~~~~fD~V~~ 219 (264)
||=|.=+++..|+........|+|.-++.+ +. ...++... ..++ .....|++++..... ....||.|+.
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~-~~g~~V~~~VDat~l~~~~~~~~~~FDrIiF 81 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELR-ELGVTVLHGVDATKLHKHFRLKNQRFDRIIF 81 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHh-hcCCccccCCCCCcccccccccCCcCCEEEE
Confidence 444555677788888765567888877632 21 12222221 2233 345678888765421 2358999999
Q ss_pred cCCCch------HHHHHHHHHhCCCcHHHHHHHHHHhh-cchh
Q 024665 220 DVAQPD------QVCFLCLILFQPIVINNLQSVNNETK-GGIF 255 (264)
Q Consensus 220 d~p~~~------~~~~~~~~~l~~~~~~~l~~~~~~Lk-~g~f 255 (264)
|-|..- ...+.....+ +...+.++.+.|+ .|.+
T Consensus 82 NFPH~G~~~~~~~~~i~~nr~L---l~~Ff~Sa~~~L~~~G~I 121 (166)
T PF10354_consen 82 NFPHVGGGSEDGKRNIRLNREL---LRGFFKSASQLLKPDGEI 121 (166)
T ss_pred eCCCCCCCccchhHHHHHHHHH---HHHHHHHHHHhcCCCCEE
Confidence 999543 2222222222 4555666666666 4433
No 328
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=85.77 E-value=3.1 Score=37.16 Aligned_cols=78 Identities=15% Similarity=0.159 Sum_probs=49.1
Q ss_pred CCEEEEEcccCChHHHHHHHHhCCC-CEEEEEeCChHHH---HHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEE
Q 024665 144 GARVLYLGAASGTTVSHVSDIVGPN-GVVYAVEFSHRSG---RDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFS 219 (264)
Q Consensus 144 g~~VLDlG~G~G~~s~~la~~~~~~-g~V~avD~s~~~~---~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~ 219 (264)
+.+||=.|+ +|.+..++++.+-.. -+|++++.+.... ..+.......++++++.+|+++...+......+|+||.
T Consensus 4 ~~~ilVtGa-tGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih 82 (322)
T PLN02662 4 GKVVCVTGA-SGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGVFH 82 (322)
T ss_pred CCEEEEECC-hHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEEEE
Confidence 456776665 788888888776433 3788887763211 11111111134789999999986644334457899987
Q ss_pred cCC
Q 024665 220 DVA 222 (264)
Q Consensus 220 d~p 222 (264)
.++
T Consensus 83 ~A~ 85 (322)
T PLN02662 83 TAS 85 (322)
T ss_pred eCC
Confidence 664
No 329
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=85.76 E-value=4.7 Score=34.90 Aligned_cols=84 Identities=13% Similarity=0.234 Sum_probs=54.5
Q ss_pred EEEEcccCChHHHHHHHHhCCCC-EEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhccc-CCCccEEEEcCCCc
Q 024665 147 VLYLGAASGTTVSHVSDIVGPNG-VVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRML-VGMVDVIFSDVAQP 224 (264)
Q Consensus 147 VLDlG~G~G~~s~~la~~~~~~g-~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~-~~~fD~V~~d~p~~ 224 (264)
++=+| -|.+...+|+.+...+ .|+.+|.++...++ .......+.++++|+++....... ...+|++++....-
T Consensus 3 iiIiG--~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~---~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~~d 77 (225)
T COG0569 3 IIIIG--AGRVGRSVARELSEEGHNVVLIDRDEERVEE---FLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATGND 77 (225)
T ss_pred EEEEC--CcHHHHHHHHHHHhCCCceEEEEcCHHHHHH---HhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeCCC
Confidence 44444 4567777777765553 79999999754322 122234689999999997644222 45899999987765
Q ss_pred hHHHHHHHHHh
Q 024665 225 DQVCFLCLILF 235 (264)
Q Consensus 225 ~~~~~~~~~~l 235 (264)
.+..+....++
T Consensus 78 ~~N~i~~~la~ 88 (225)
T COG0569 78 EVNSVLALLAL 88 (225)
T ss_pred HHHHHHHHHHH
Confidence 55555544443
No 330
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=85.75 E-value=14 Score=31.31 Aligned_cols=78 Identities=13% Similarity=0.137 Sum_probs=49.5
Q ss_pred CCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhh-cCCCeEEEEcCCCCchhhccc-------CCCc
Q 024665 144 GARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAK-KRTNVIPIIEDARHPAKYRML-------VGMV 214 (264)
Q Consensus 144 g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~-~~~nV~~i~~D~~~~~~~~~~-------~~~f 214 (264)
+.+||=.|+ +|.+..++++.+ ....+|+.++.++...+++.+... ...+++++..|+.+....... .+.+
T Consensus 7 ~~~vlVtG~-sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 85 (239)
T PRK07666 7 GKNALITGA-GRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYGVKVVIATADVSDYEEVTAAIEQLKNELGSI 85 (239)
T ss_pred CCEEEEEcC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCeEEEEECCCCCHHHHHHHHHHHHHHcCCc
Confidence 467888886 667777766543 344589999988654433333222 223788999999886532111 2468
Q ss_pred cEEEEcCC
Q 024665 215 DVIFSDVA 222 (264)
Q Consensus 215 D~V~~d~p 222 (264)
|+|+.+..
T Consensus 86 d~vi~~ag 93 (239)
T PRK07666 86 DILINNAG 93 (239)
T ss_pred cEEEEcCc
Confidence 99998765
No 331
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=85.72 E-value=8.7 Score=33.30 Aligned_cols=80 Identities=11% Similarity=0.158 Sum_probs=49.0
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc-CCCeEEEEcCCCCchhhcc-------cCCCc
Q 024665 143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK-RTNVIPIIEDARHPAKYRM-------LVGMV 214 (264)
Q Consensus 143 ~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~-~~nV~~i~~D~~~~~~~~~-------~~~~f 214 (264)
.+.+||=.|+..|.=...+.++.....+|+.++.+++.++++.+.... ..++.++..|+.+...... ....+
T Consensus 9 ~~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 88 (265)
T PRK07097 9 KGKIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELGIEAHGYVCDVTDEDGVQAMVSQIEKEVGVI 88 (265)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhCCCC
Confidence 456888888887653322223333345788888886554444433322 2368899999988653211 12468
Q ss_pred cEEEEcCC
Q 024665 215 DVIFSDVA 222 (264)
Q Consensus 215 D~V~~d~p 222 (264)
|.|+.+..
T Consensus 89 d~li~~ag 96 (265)
T PRK07097 89 DILVNNAG 96 (265)
T ss_pred CEEEECCC
Confidence 99998765
No 332
>PRK07904 short chain dehydrogenase; Provisional
Probab=85.70 E-value=4 Score=35.45 Aligned_cols=81 Identities=17% Similarity=0.102 Sum_probs=50.5
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHh-CC-CCEEEEEeCChHH-HHHHHHHhhcC--CCeEEEEcCCCCchhhc----cc-
Q 024665 141 IKPGARVLYLGAASGTTVSHVSDIV-GP-NGVVYAVEFSHRS-GRDLVNMAKKR--TNVIPIIEDARHPAKYR----ML- 210 (264)
Q Consensus 141 l~~g~~VLDlG~G~G~~s~~la~~~-~~-~g~V~avD~s~~~-~~~l~~~a~~~--~nV~~i~~D~~~~~~~~----~~- 210 (264)
+..+.+||=.|| ++.+...+++.+ .. ..+|+.++.++.. .+++.+..... .+++++..|+.+..... ..
T Consensus 5 ~~~~~~vlItGa-s~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~~~~~~~~~~~~ 83 (253)
T PRK07904 5 VGNPQTILLLGG-TSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDTDSHPKVIDAAF 83 (253)
T ss_pred cCCCcEEEEEcC-CcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCChHHHHHHHHHHH
Confidence 445668998888 456666666553 32 2489999887542 33443333222 27899999998755311 11
Q ss_pred -CCCccEEEEcCC
Q 024665 211 -VGMVDVIFSDVA 222 (264)
Q Consensus 211 -~~~fD~V~~d~p 222 (264)
.+.+|+++.+..
T Consensus 84 ~~g~id~li~~ag 96 (253)
T PRK07904 84 AGGDVDVAIVAFG 96 (253)
T ss_pred hcCCCCEEEEeee
Confidence 147999987765
No 333
>PRK09291 short chain dehydrogenase; Provisional
Probab=85.64 E-value=16 Score=31.17 Aligned_cols=77 Identities=16% Similarity=-0.012 Sum_probs=48.1
Q ss_pred CEEEEEcccCChHHHHHHHHhC-CCCEEEEEeCChHHHHHHHHHhhc-CCCeEEEEcCCCCchhhccc-CCCccEEEEcC
Q 024665 145 ARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKK-RTNVIPIIEDARHPAKYRML-VGMVDVIFSDV 221 (264)
Q Consensus 145 ~~VLDlG~G~G~~s~~la~~~~-~~g~V~avD~s~~~~~~l~~~a~~-~~nV~~i~~D~~~~~~~~~~-~~~fD~V~~d~ 221 (264)
.+||=.|+ +|.+...+++.+. ...+|+++..++....++.+.... ..++.++..|+.+....... ...+|+|+.+.
T Consensus 3 ~~vlVtGa-sg~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~id~vi~~a 81 (257)
T PRK09291 3 KTILITGA-GSGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARRGLALRVEKLDLTDAIDRAQAAEWDVDVLLNNA 81 (257)
T ss_pred CEEEEeCC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcceEEEeeCCCHHHHHHHhcCCCCEEEECC
Confidence 46777777 4555666655442 345899998886444344333322 23688999999886543222 23799999875
Q ss_pred C
Q 024665 222 A 222 (264)
Q Consensus 222 p 222 (264)
.
T Consensus 82 g 82 (257)
T PRK09291 82 G 82 (257)
T ss_pred C
Confidence 4
No 334
>PRK06194 hypothetical protein; Provisional
Probab=85.62 E-value=11 Score=32.86 Aligned_cols=78 Identities=17% Similarity=0.192 Sum_probs=48.3
Q ss_pred CCEEEEEcccCChHHHHHHHHhC-CCCEEEEEeCChHHHHHHHHHhhc-CCCeEEEEcCCCCchhhccc-------CCCc
Q 024665 144 GARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKK-RTNVIPIIEDARHPAKYRML-------VGMV 214 (264)
Q Consensus 144 g~~VLDlG~G~G~~s~~la~~~~-~~g~V~avD~s~~~~~~l~~~a~~-~~nV~~i~~D~~~~~~~~~~-------~~~f 214 (264)
+.+||=.|+. |.+..++++.+- ...+|+.+|.++...+++.+.... ..+++++..|+.+....... .+.+
T Consensus 6 ~k~vlVtGas-ggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~i 84 (287)
T PRK06194 6 GKVAVITGAA-SGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQGAEVLGVRTDVSDAAQVEALADAALERFGAV 84 (287)
T ss_pred CCEEEEeCCc-cHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence 4678866655 555666655443 345799999886554444333222 33688899999886432111 1357
Q ss_pred cEEEEcCC
Q 024665 215 DVIFSDVA 222 (264)
Q Consensus 215 D~V~~d~p 222 (264)
|+|+.+..
T Consensus 85 d~vi~~Ag 92 (287)
T PRK06194 85 HLLFNNAG 92 (287)
T ss_pred CEEEECCC
Confidence 99998876
No 335
>PRK08267 short chain dehydrogenase; Provisional
Probab=85.53 E-value=7.2 Score=33.61 Aligned_cols=75 Identities=19% Similarity=0.150 Sum_probs=46.4
Q ss_pred EEEEEcccCChHHHHHHHHhC-CCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcc----c----CCCccE
Q 024665 146 RVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRM----L----VGMVDV 216 (264)
Q Consensus 146 ~VLDlG~G~G~~s~~la~~~~-~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~----~----~~~fD~ 216 (264)
+||=.|+.. .+...+++.+- ...+|+.++.++...+++.+... ..++++++.|+.+...... . .+++|+
T Consensus 3 ~vlItGasg-~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~id~ 80 (260)
T PRK08267 3 SIFITGAAS-GIGRATALLFAAEGWRVGAYDINEAGLAALAAELG-AGNAWTGALDVTDRAAWDAALADFAAATGGRLDV 80 (260)
T ss_pred EEEEeCCCc-hHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc-CCceEEEEecCCCHHHHHHHHHHHHHHcCCCCCE
Confidence 577777664 55555554332 34589999988755444433222 3478999999988543211 1 346899
Q ss_pred EEEcCC
Q 024665 217 IFSDVA 222 (264)
Q Consensus 217 V~~d~p 222 (264)
|+.++.
T Consensus 81 vi~~ag 86 (260)
T PRK08267 81 LFNNAG 86 (260)
T ss_pred EEECCC
Confidence 998765
No 336
>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein. This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.
Probab=85.52 E-value=2.9 Score=37.24 Aligned_cols=103 Identities=17% Similarity=0.108 Sum_probs=47.2
Q ss_pred CCCCCCEEEEEcccCCh----HHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCcc
Q 024665 140 WIKPGARVLYLGAASGT----TVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVD 215 (264)
Q Consensus 140 ~l~~g~~VLDlG~G~G~----~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD 215 (264)
.+...++||-+|+|+=- =+..|.+-+.....++-.|+.+-. . +--..+.+|...+. ...++|
T Consensus 58 aVP~nMrVlHlGAgSdkGvaPGt~VLrqwlP~~ailvDnDi~d~v-----S-----Da~~~~~~Dc~t~~----~~~k~D 123 (299)
T PF06460_consen 58 AVPHNMRVLHLGAGSDKGVAPGTAVLRQWLPEDAILVDNDIRDYV-----S-----DADQSIVGDCRTYM----PPDKFD 123 (299)
T ss_dssp ---TT-EEEEES---TTSB-HHHHHHHHHS-TT-EEEEEESS--B-----------SSSEEEES-GGGEE----ESS-EE
T ss_pred eeccCcEEEEecccccCCcCCchHHHHHhCCCCcEEEecchhhhc-----c-----ccCCceeccccccC----CCCccc
Confidence 46778999999998743 344555555455678888887421 1 12246778877654 457999
Q ss_pred EEEEcCCCchHHHHHHHHHhCCCcHHHHHHHHH-Hhh-cchhh
Q 024665 216 VIFSDVAQPDQVCFLCLILFQPIVINNLQSVNN-ETK-GGIFE 256 (264)
Q Consensus 216 ~V~~d~p~~~~~~~~~~~~l~~~~~~~l~~~~~-~Lk-~g~f~ 256 (264)
+||+|+-.+....+...+..+.....++..+++ .|. +|.+.
T Consensus 124 lIiSDmYd~~~k~~~~~n~~~~~fF~yl~~~i~~kLaLGGSva 166 (299)
T PF06460_consen 124 LIISDMYDGRTKNCDGENNSKEGFFTYLCGFIKEKLALGGSVA 166 (299)
T ss_dssp EEEE----TTS-SS-S------THHHHHHHHHHHHEEEEEEEE
T ss_pred EEEEecccccccccccccCCccccHHHHHHHHHhhhhcCceEE
Confidence 999998743333333333344445555555544 355 55443
No 337
>PRK08339 short chain dehydrogenase; Provisional
Probab=85.49 E-value=15 Score=31.93 Aligned_cols=79 Identities=14% Similarity=0.165 Sum_probs=48.2
Q ss_pred CCCEEEEEcccCChHHHHHHHH-hCCCCEEEEEeCChHHHHHHHHHhhc--CCCeEEEEcCCCCchhhccc------CCC
Q 024665 143 PGARVLYLGAASGTTVSHVSDI-VGPNGVVYAVEFSHRSGRDLVNMAKK--RTNVIPIIEDARHPAKYRML------VGM 213 (264)
Q Consensus 143 ~g~~VLDlG~G~G~~s~~la~~-~~~~g~V~avD~s~~~~~~l~~~a~~--~~nV~~i~~D~~~~~~~~~~------~~~ 213 (264)
.+.++|=.|+++|. ...+++. .....+|+.++.++..++++.+.... ..++.++..|+.+....... .+.
T Consensus 7 ~~k~~lItGas~gI-G~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~g~ 85 (263)
T PRK08339 7 SGKLAFTTASSKGI-GFGVARVLARAGADVILLSRNEENLKKAREKIKSESNVDVSYIVADLTKREDLERTVKELKNIGE 85 (263)
T ss_pred CCCEEEEeCCCCcH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHHHhhCC
Confidence 46678888877665 3333333 33345899999986544443332221 23788999999986532111 146
Q ss_pred ccEEEEcCC
Q 024665 214 VDVIFSDVA 222 (264)
Q Consensus 214 fD~V~~d~p 222 (264)
+|+++.+..
T Consensus 86 iD~lv~nag 94 (263)
T PRK08339 86 PDIFFFSTG 94 (263)
T ss_pred CcEEEECCC
Confidence 899988764
No 338
>PRK06181 short chain dehydrogenase; Provisional
Probab=85.41 E-value=11 Score=32.44 Aligned_cols=77 Identities=12% Similarity=0.119 Sum_probs=46.4
Q ss_pred CEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhhc-CCCeEEEEcCCCCchhhccc-------CCCcc
Q 024665 145 ARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKK-RTNVIPIIEDARHPAKYRML-------VGMVD 215 (264)
Q Consensus 145 ~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~~-~~nV~~i~~D~~~~~~~~~~-------~~~fD 215 (264)
.+||=.|+ +|.+...+++.+ ....+|++++.++...+++.+.... ..++.++..|+.+....... ...+|
T Consensus 2 ~~vlVtGa-sg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id 80 (263)
T PRK06181 2 KVVIITGA-SEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHGGEALVVPTDVSDAEACERLIEAAVARFGGID 80 (263)
T ss_pred CEEEEecC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence 35776664 455666665443 3346899999986544443332222 23788999999886532111 13689
Q ss_pred EEEEcCC
Q 024665 216 VIFSDVA 222 (264)
Q Consensus 216 ~V~~d~p 222 (264)
+|+.+..
T Consensus 81 ~vi~~ag 87 (263)
T PRK06181 81 ILVNNAG 87 (263)
T ss_pred EEEECCC
Confidence 9998764
No 339
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=85.24 E-value=20 Score=30.45 Aligned_cols=76 Identities=13% Similarity=0.193 Sum_probs=46.8
Q ss_pred EEEEEcccCChHHHHHHHHhC-CCCEEEEEeCChHHHHHHHHHhh-cCCCeEEEEcCCCCchhh-------cccCCCccE
Q 024665 146 RVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAK-KRTNVIPIIEDARHPAKY-------RMLVGMVDV 216 (264)
Q Consensus 146 ~VLDlG~G~G~~s~~la~~~~-~~g~V~avD~s~~~~~~l~~~a~-~~~nV~~i~~D~~~~~~~-------~~~~~~fD~ 216 (264)
+||=.| ++|.+..++++.+- ...+|++++.++...+.+.+... ...+++++..|+.+.... .......|+
T Consensus 3 ~vlItG-a~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~ 81 (255)
T TIGR01963 3 TALVTG-AASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDAGGSVIYLVADVTKEDEIADMIAAAAAEFGGLDI 81 (255)
T ss_pred EEEEcC-CcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHhcCCCCE
Confidence 456556 55677777765543 33479999998654433333221 223789999999886521 111246899
Q ss_pred EEEcCC
Q 024665 217 IFSDVA 222 (264)
Q Consensus 217 V~~d~p 222 (264)
|+.+..
T Consensus 82 vi~~a~ 87 (255)
T TIGR01963 82 LVNNAG 87 (255)
T ss_pred EEECCC
Confidence 998764
No 340
>PRK06949 short chain dehydrogenase; Provisional
Probab=85.17 E-value=18 Score=30.85 Aligned_cols=79 Identities=13% Similarity=0.143 Sum_probs=50.0
Q ss_pred CCCEEEEEcccCChHHHHHHHHhC-CCCEEEEEeCChHHHHHHHHHhh-cCCCeEEEEcCCCCchhhcc-------cCCC
Q 024665 143 PGARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAK-KRTNVIPIIEDARHPAKYRM-------LVGM 213 (264)
Q Consensus 143 ~g~~VLDlG~G~G~~s~~la~~~~-~~g~V~avD~s~~~~~~l~~~a~-~~~nV~~i~~D~~~~~~~~~-------~~~~ 213 (264)
.+.+||=.| ++|.+..++++.+. ...+|++++.+++.++++..... ...+++++..|+.+...... ..+.
T Consensus 8 ~~k~ilItG-asg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 86 (258)
T PRK06949 8 EGKVALVTG-ASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEGGAAHVVSLDVTDYQSIKAAVAHAETEAGT 86 (258)
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHhcCC
Confidence 467888888 55566666665553 33479999998655444443322 23468899999987543211 1246
Q ss_pred ccEEEEcCC
Q 024665 214 VDVIFSDVA 222 (264)
Q Consensus 214 fD~V~~d~p 222 (264)
+|+|+.+..
T Consensus 87 ~d~li~~ag 95 (258)
T PRK06949 87 IDILVNNSG 95 (258)
T ss_pred CCEEEECCC
Confidence 899998765
No 341
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=85.06 E-value=6.1 Score=36.73 Aligned_cols=75 Identities=20% Similarity=0.255 Sum_probs=47.3
Q ss_pred EEEEcccCChHHHHHHHHhCCCC---EEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEcCCC
Q 024665 147 VLYLGAASGTTVSHVSDIVGPNG---VVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQ 223 (264)
Q Consensus 147 VLDlG~G~G~~s~~la~~~~~~g---~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p~ 223 (264)
||=+|| |.....+++.+.... +|+..|.+.+.++.+.+.. ...++++++.|+.+......+....|+|+.-.++
T Consensus 1 IlvlG~--G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp 77 (386)
T PF03435_consen 1 ILVLGA--GRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKL-LGDRVEAVQVDVNDPESLAELLRGCDVVINCAGP 77 (386)
T ss_dssp EEEE----SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT---TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSG
T ss_pred CEEEcC--cHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhc-cccceeEEEEecCCHHHHHHHHhcCCEEEECCcc
Confidence 566777 888887777664433 7999999976544433322 3458999999999876543445678999977664
Q ss_pred c
Q 024665 224 P 224 (264)
Q Consensus 224 ~ 224 (264)
.
T Consensus 78 ~ 78 (386)
T PF03435_consen 78 F 78 (386)
T ss_dssp G
T ss_pred c
Confidence 3
No 342
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=85.06 E-value=2 Score=39.03 Aligned_cols=83 Identities=18% Similarity=0.148 Sum_probs=56.2
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHH----Hhhc--CCCeEEEEcCCCCchhhcccCCCc
Q 024665 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVN----MAKK--RTNVIPIIEDARHPAKYRMLVGMV 214 (264)
Q Consensus 141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~----~a~~--~~nV~~i~~D~~~~~~~~~~~~~f 214 (264)
+..-++||=+|-|-|...-..+.+ ..-..+.-+|++...++-..+ ++.. .+.|....+|...+.+. ...++|
T Consensus 119 ~~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~-~~~~~~ 196 (337)
T KOG1562|consen 119 HPNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLED-LKENPF 196 (337)
T ss_pred CCCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHH-hccCCc
Confidence 334468999999999987777766 334578889998765433222 2211 23799999998776542 125689
Q ss_pred cEEEEcCCCch
Q 024665 215 DVIFSDVAQPD 225 (264)
Q Consensus 215 D~V~~d~p~~~ 225 (264)
|+|+.|...|.
T Consensus 197 dVii~dssdpv 207 (337)
T KOG1562|consen 197 DVIITDSSDPV 207 (337)
T ss_pred eEEEEecCCcc
Confidence 99999887543
No 343
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=85.05 E-value=6.2 Score=37.29 Aligned_cols=76 Identities=13% Similarity=0.152 Sum_probs=52.0
Q ss_pred CCEEEEEcccCChHHHHHHHHhCC-CCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhc-ccCCCccEEEEcC
Q 024665 144 GARVLYLGAASGTTVSHVSDIVGP-NGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYR-MLVGMVDVIFSDV 221 (264)
Q Consensus 144 g~~VLDlG~G~G~~s~~la~~~~~-~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~-~~~~~fD~V~~d~ 221 (264)
..+||=+|+ |.++..+++.+.. ...|+.+|.+++..+++.+ ...++.++++|+++...+. .....+|.|++-.
T Consensus 231 ~~~iiIiG~--G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~---~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~~ 305 (453)
T PRK09496 231 VKRVMIVGG--GNIGYYLAKLLEKEGYSVKLIERDPERAEELAE---ELPNTLVLHGDGTDQELLEEEGIDEADAFIALT 305 (453)
T ss_pred CCEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHH---HCCCCeEEECCCCCHHHHHhcCCccCCEEEECC
Confidence 456776666 8888888877754 3579999999865433322 2246789999998875431 2345899998866
Q ss_pred CCc
Q 024665 222 AQP 224 (264)
Q Consensus 222 p~~ 224 (264)
+..
T Consensus 306 ~~~ 308 (453)
T PRK09496 306 NDD 308 (453)
T ss_pred CCc
Confidence 643
No 344
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=85.04 E-value=9.1 Score=32.83 Aligned_cols=79 Identities=14% Similarity=0.119 Sum_probs=49.2
Q ss_pred CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhhc-CCCeEEEEcCCCCchhhcc-------cCCC
Q 024665 143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKK-RTNVIPIIEDARHPAKYRM-------LVGM 213 (264)
Q Consensus 143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~~-~~nV~~i~~D~~~~~~~~~-------~~~~ 213 (264)
++.+||=.|+. +.+...++..+ ....+|+.++.+++.++.+.+.... ..++.++..|+.+...... ..+.
T Consensus 10 ~~k~ilItGas-~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 88 (256)
T PRK06124 10 AGQVALVTGSA-RGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAGGAAEALAFDIADEEAVAAAFARIDAEHGR 88 (256)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhcCC
Confidence 46788888864 55555555443 2346899999986554444333322 2368899999988643211 1246
Q ss_pred ccEEEEcCC
Q 024665 214 VDVIFSDVA 222 (264)
Q Consensus 214 fD~V~~d~p 222 (264)
+|+|+.++.
T Consensus 89 id~vi~~ag 97 (256)
T PRK06124 89 LDILVNNVG 97 (256)
T ss_pred CCEEEECCC
Confidence 799998765
No 345
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=84.95 E-value=5.8 Score=34.29 Aligned_cols=76 Identities=14% Similarity=0.149 Sum_probs=46.8
Q ss_pred EEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcc-------cCCCccEE
Q 024665 146 RVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRM-------LVGMVDVI 217 (264)
Q Consensus 146 ~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~-------~~~~fD~V 217 (264)
+||=.|+++| +...+++.+ ....+|+.++.++..++++.+......++.++..|+.+...... ..+.+|+|
T Consensus 2 ~vlItGas~g-IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d~~~~~~~~~~~~~~~g~id~l 80 (259)
T PRK08340 2 NVLVTASSRG-IGFNVARELLKKGARVVISSRNEENLEKALKELKEYGEVYAVKADLSDKDDLKNLVKEAWELLGGIDAL 80 (259)
T ss_pred eEEEEcCCcH-HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEcCCCCHHHHHHHHHHHHHhcCCCCEE
Confidence 5777786654 454444443 23458999998865544444333333478899999988642211 12478999
Q ss_pred EEcCC
Q 024665 218 FSDVA 222 (264)
Q Consensus 218 ~~d~p 222 (264)
+.+..
T Consensus 81 i~naG 85 (259)
T PRK08340 81 VWNAG 85 (259)
T ss_pred EECCC
Confidence 98764
No 346
>PRK08226 short chain dehydrogenase; Provisional
Probab=84.89 E-value=15 Score=31.68 Aligned_cols=79 Identities=14% Similarity=0.256 Sum_probs=46.9
Q ss_pred CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhccc-------CCCc
Q 024665 143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRML-------VGMV 214 (264)
Q Consensus 143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~-------~~~f 214 (264)
++.++|=.|+.. .+...+++.+ ....+|+.++.++...+...+......++.++..|+.+......+ ....
T Consensus 5 ~~~~~lItG~s~-giG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~~i 83 (263)
T PRK08226 5 TGKTALITGALQ-GIGEGIARVFARHGANLILLDISPEIEKLADELCGRGHRCTAVVADVRDPASVAAAIKRAKEKEGRI 83 (263)
T ss_pred CCCEEEEeCCCC-hHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence 356788778754 4455444433 334579999988643222222222234688899999886432111 2468
Q ss_pred cEEEEcCC
Q 024665 215 DVIFSDVA 222 (264)
Q Consensus 215 D~V~~d~p 222 (264)
|+|+.+..
T Consensus 84 d~vi~~ag 91 (263)
T PRK08226 84 DILVNNAG 91 (263)
T ss_pred CEEEECCC
Confidence 99998765
No 347
>PLN02253 xanthoxin dehydrogenase
Probab=84.72 E-value=5.4 Score=34.87 Aligned_cols=79 Identities=15% Similarity=0.192 Sum_probs=49.9
Q ss_pred CCCEEEEEcccCChHHHHHHHHhC-CCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhccc-------CCCc
Q 024665 143 PGARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRML-------VGMV 214 (264)
Q Consensus 143 ~g~~VLDlG~G~G~~s~~la~~~~-~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~-------~~~f 214 (264)
.+.+||=.|+. |.+..++++.+- ...+|+.++.+++..+++.+......++++++.|+.+....... .+.+
T Consensus 17 ~~k~~lItGas-~gIG~~la~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~g~i 95 (280)
T PLN02253 17 LGKVALVTGGA-TGIGESIVRLFHKHGAKVCIVDLQDDLGQNVCDSLGGEPNVCFFHCDVTVEDDVSRAVDFTVDKFGTL 95 (280)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCceEEEEeecCCHHHHHHHHHHHHHHhCCC
Confidence 35678888865 555666655442 34589999988655444444332234689999999986532111 1468
Q ss_pred cEEEEcCC
Q 024665 215 DVIFSDVA 222 (264)
Q Consensus 215 D~V~~d~p 222 (264)
|+|+.++.
T Consensus 96 d~li~~Ag 103 (280)
T PLN02253 96 DIMVNNAG 103 (280)
T ss_pred CEEEECCC
Confidence 99998764
No 348
>PRK05650 short chain dehydrogenase; Provisional
Probab=84.63 E-value=15 Score=31.82 Aligned_cols=76 Identities=14% Similarity=0.144 Sum_probs=46.0
Q ss_pred EEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhh-cCCCeEEEEcCCCCchhhcc-------cCCCccE
Q 024665 146 RVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAK-KRTNVIPIIEDARHPAKYRM-------LVGMVDV 216 (264)
Q Consensus 146 ~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~-~~~nV~~i~~D~~~~~~~~~-------~~~~fD~ 216 (264)
+||=.|+ +|.+...+++.+ ....+|+.++.++.-.+++.+... ...++.++..|+.+...... ....+|+
T Consensus 2 ~vlVtGa-sggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~id~ 80 (270)
T PRK05650 2 RVMITGA-ASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREAGGDGFYQRCDVRDYSQLTALAQACEEKWGGIDV 80 (270)
T ss_pred EEEEecC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence 5676666 445555555443 334589999988654444433322 23478899999988643211 1246899
Q ss_pred EEEcCC
Q 024665 217 IFSDVA 222 (264)
Q Consensus 217 V~~d~p 222 (264)
|+.+..
T Consensus 81 lI~~ag 86 (270)
T PRK05650 81 IVNNAG 86 (270)
T ss_pred EEECCC
Confidence 998765
No 349
>PRK07576 short chain dehydrogenase; Provisional
Probab=84.59 E-value=9.7 Score=33.12 Aligned_cols=79 Identities=18% Similarity=0.189 Sum_probs=47.8
Q ss_pred CCCEEEEEcccCChHHHHHHHHhC-CCCEEEEEeCChHHHHHHHHHh-hcCCCeEEEEcCCCCchhhcc-------cCCC
Q 024665 143 PGARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMA-KKRTNVIPIIEDARHPAKYRM-------LVGM 213 (264)
Q Consensus 143 ~g~~VLDlG~G~G~~s~~la~~~~-~~g~V~avD~s~~~~~~l~~~a-~~~~nV~~i~~D~~~~~~~~~-------~~~~ 213 (264)
++.+||=.|+ +|.+...+++.+- ...+|+.++.+++-.+++.+.. ....++.++..|+++...... ....
T Consensus 8 ~~k~ilItGa-sggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~~~~ 86 (264)
T PRK07576 8 AGKNVVVVGG-TSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAGPEGLGVSADVRDYAAVEAAFAQIADEFGP 86 (264)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 4668888875 5566665554443 3457999998865433333222 222367888999987542211 1236
Q ss_pred ccEEEEcCC
Q 024665 214 VDVIFSDVA 222 (264)
Q Consensus 214 fD~V~~d~p 222 (264)
+|+|+.++.
T Consensus 87 iD~vi~~ag 95 (264)
T PRK07576 87 IDVLVSGAA 95 (264)
T ss_pred CCEEEECCC
Confidence 899998763
No 350
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=84.55 E-value=7.1 Score=34.15 Aligned_cols=62 Identities=15% Similarity=0.049 Sum_probs=42.0
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCC-CeEEEEcCCCCc
Q 024665 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRT-NVIPIIEDARHP 204 (264)
Q Consensus 141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~-nV~~i~~D~~~~ 204 (264)
.-..+-|+++|.|+|.++-.+... ...++.-||++++.+.-+.-.+...+ ...+.+.|+..+
T Consensus 48 ~~~~~~v~eIgPgpggitR~il~a--~~~RL~vVE~D~RFip~LQ~L~EAa~~~~~IHh~D~LR~ 110 (326)
T KOG0821|consen 48 NLTNAYVYEIGPGPGGITRSILNA--DVARLLVVEKDTRFIPGLQMLSEAAPGKLRIHHGDVLRF 110 (326)
T ss_pred ccccceeEEecCCCCchhHHHHhc--chhheeeeeeccccChHHHHHhhcCCcceEEecccccee
Confidence 445678999999999999988765 34578888988766443333222222 566667777654
No 351
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=84.41 E-value=15 Score=33.32 Aligned_cols=77 Identities=17% Similarity=0.233 Sum_probs=57.4
Q ss_pred CCCEEEEEcccCCh---HHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhh-------cccCC
Q 024665 143 PGARVLYLGAASGT---TVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKY-------RMLVG 212 (264)
Q Consensus 143 ~g~~VLDlG~G~G~---~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~-------~~~~~ 212 (264)
.++.||==|+|+|. +++.+|++ .++++-+|+++....+..+...+..+++.+..|+.+.... +...+
T Consensus 37 ~g~~vLITGgg~GlGr~ialefa~r---g~~~vl~Din~~~~~etv~~~~~~g~~~~y~cdis~~eei~~~a~~Vk~e~G 113 (300)
T KOG1201|consen 37 SGEIVLITGGGSGLGRLIALEFAKR---GAKLVLWDINKQGNEETVKEIRKIGEAKAYTCDISDREEIYRLAKKVKKEVG 113 (300)
T ss_pred cCCEEEEeCCCchHHHHHHHHHHHh---CCeEEEEeccccchHHHHHHHHhcCceeEEEecCCCHHHHHHHHHHHHHhcC
Confidence 47899999999997 66677766 4489999999766556566555434799999999886521 22356
Q ss_pred CccEEEEcCC
Q 024665 213 MVDVIFSDVA 222 (264)
Q Consensus 213 ~fD~V~~d~p 222 (264)
.+|+++.|+.
T Consensus 114 ~V~ILVNNAG 123 (300)
T KOG1201|consen 114 DVDILVNNAG 123 (300)
T ss_pred CceEEEeccc
Confidence 8999998876
No 352
>PRK07326 short chain dehydrogenase; Provisional
Probab=84.09 E-value=7.5 Score=32.81 Aligned_cols=79 Identities=16% Similarity=0.184 Sum_probs=50.3
Q ss_pred CCCEEEEEcccCChHHHHHHHHhC-CCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcc-------cCCCc
Q 024665 143 PGARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRM-------LVGMV 214 (264)
Q Consensus 143 ~g~~VLDlG~G~G~~s~~la~~~~-~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~-------~~~~f 214 (264)
++.+||=.|+ +|.+...++..+- ...+|++++.++...+++.+.......++++..|+.+...... ....+
T Consensus 5 ~~~~ilItGa-tg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~ 83 (237)
T PRK07326 5 KGKVALITGG-SKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNKGNVLGLAADVRDEADVQRAVDAIVAAFGGL 83 (237)
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhccCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 3567888885 7777777766553 2358999998875544443332222568899999987643211 11368
Q ss_pred cEEEEcCC
Q 024665 215 DVIFSDVA 222 (264)
Q Consensus 215 D~V~~d~p 222 (264)
|+|+....
T Consensus 84 d~vi~~ag 91 (237)
T PRK07326 84 DVLIANAG 91 (237)
T ss_pred CEEEECCC
Confidence 99997654
No 353
>PRK08324 short chain dehydrogenase; Validated
Probab=84.04 E-value=8.3 Score=38.94 Aligned_cols=79 Identities=15% Similarity=0.187 Sum_probs=49.0
Q ss_pred CCCEEEEEcccCChHHHHHHHHhC-CCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhccc-------CCCc
Q 024665 143 PGARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRML-------VGMV 214 (264)
Q Consensus 143 ~g~~VLDlG~G~G~~s~~la~~~~-~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~-------~~~f 214 (264)
++.+||=.|+.. .+...++..+. ...+|+.+|.++...+.+.+......++.++..|+++....... .+.+
T Consensus 421 ~gk~vLVTGasg-gIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~~~v~~v~~Dvtd~~~v~~~~~~~~~~~g~i 499 (681)
T PRK08324 421 AGKVALVTGAAG-GIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGPDRALGVACDVTDEAAVQAAFEEAALAFGGV 499 (681)
T ss_pred CCCEEEEecCCC-HHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhccCcEEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 567888887754 45555544432 33589999999654434333222224788999999886532111 2368
Q ss_pred cEEEEcCC
Q 024665 215 DVIFSDVA 222 (264)
Q Consensus 215 D~V~~d~p 222 (264)
|+||.+..
T Consensus 500 DvvI~~AG 507 (681)
T PRK08324 500 DIVVSNAG 507 (681)
T ss_pred CEEEECCC
Confidence 99998765
No 354
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=83.89 E-value=4.5 Score=34.60 Aligned_cols=61 Identities=18% Similarity=0.322 Sum_probs=44.6
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHh---CCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCch
Q 024665 141 IKPGARVLYLGAASGTTVSHVSDIV---GPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPA 205 (264)
Q Consensus 141 l~~g~~VLDlG~G~G~~s~~la~~~---~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~ 205 (264)
++| +.|++.|...|..++..|..+ +...+|+++|++.+.. -..+...+.|.+++++-+++.
T Consensus 68 ~~P-~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~---~p~a~e~p~i~f~egss~dpa 131 (237)
T COG3510 68 LQP-SLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPL---DPAAREVPDILFIEGSSTDPA 131 (237)
T ss_pred cCC-ceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcC---ChhhhcCCCeEEEeCCCCCHH
Confidence 455 589999999999888887665 3345899999995331 112222568999999999875
No 355
>PRK08589 short chain dehydrogenase; Validated
Probab=83.74 E-value=11 Score=32.98 Aligned_cols=78 Identities=18% Similarity=0.218 Sum_probs=47.0
Q ss_pred CCCEEEEEcccCChHHHHHHHH-hCCCCEEEEEeCChHHHHHHHHHhh-cCCCeEEEEcCCCCchhhcc-------cCCC
Q 024665 143 PGARVLYLGAASGTTVSHVSDI-VGPNGVVYAVEFSHRSGRDLVNMAK-KRTNVIPIIEDARHPAKYRM-------LVGM 213 (264)
Q Consensus 143 ~g~~VLDlG~G~G~~s~~la~~-~~~~g~V~avD~s~~~~~~l~~~a~-~~~nV~~i~~D~~~~~~~~~-------~~~~ 213 (264)
.+.+||=.|+..|. ...++.. .....+|+.++.+++. +++++... ...++.++..|+.+...... ..+.
T Consensus 5 ~~k~vlItGas~gI-G~aia~~l~~~G~~vi~~~r~~~~-~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~ 82 (272)
T PRK08589 5 ENKVAVITGASTGI-GQASAIALAQEGAYVLAVDIAEAV-SETVDKIKSNGGKAKAYHVDISDEQQVKDFASEIKEQFGR 82 (272)
T ss_pred CCCEEEEECCCchH-HHHHHHHHHHCCCEEEEEeCcHHH-HHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHHHcCC
Confidence 45678878877655 4444433 3334689999988433 33333222 22368899999988643211 1246
Q ss_pred ccEEEEcCC
Q 024665 214 VDVIFSDVA 222 (264)
Q Consensus 214 fD~V~~d~p 222 (264)
+|+++.++.
T Consensus 83 id~li~~Ag 91 (272)
T PRK08589 83 VDVLFNNAG 91 (272)
T ss_pred cCEEEECCC
Confidence 899998865
No 356
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=83.58 E-value=10 Score=35.81 Aligned_cols=74 Identities=16% Similarity=0.295 Sum_probs=49.7
Q ss_pred EEEEEcccCChHHHHHHHHhCC-CCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhccc-CCCccEEEEcCCC
Q 024665 146 RVLYLGAASGTTVSHVSDIVGP-NGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRML-VGMVDVIFSDVAQ 223 (264)
Q Consensus 146 ~VLDlG~G~G~~s~~la~~~~~-~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~-~~~fD~V~~d~p~ 223 (264)
+|+=+|| |.++..+++.+.. ...|+.+|.+++..+.+ .....+.++.+|+++....... ...+|.|++-.+.
T Consensus 2 ~viIiG~--G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~----~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~~ 75 (453)
T PRK09496 2 KIIIVGA--GQVGYTLAENLSGENNDVTVIDTDEERLRRL----QDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVTDS 75 (453)
T ss_pred EEEEECC--CHHHHHHHHHHHhCCCcEEEEECCHHHHHHH----HhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEecCC
Confidence 4555554 8999999987654 34799999997543322 2223688999999876543223 4579999987664
Q ss_pred ch
Q 024665 224 PD 225 (264)
Q Consensus 224 ~~ 225 (264)
.+
T Consensus 76 ~~ 77 (453)
T PRK09496 76 DE 77 (453)
T ss_pred hH
Confidence 33
No 357
>PRK07677 short chain dehydrogenase; Provisional
Probab=83.30 E-value=15 Score=31.55 Aligned_cols=77 Identities=16% Similarity=0.207 Sum_probs=46.6
Q ss_pred CEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhhc-CCCeEEEEcCCCCchhhcc-------cCCCcc
Q 024665 145 ARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKK-RTNVIPIIEDARHPAKYRM-------LVGMVD 215 (264)
Q Consensus 145 ~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~~-~~nV~~i~~D~~~~~~~~~-------~~~~fD 215 (264)
.++|=.|++.| +..++++.+ ....+|+.++.++...+++.+.... ..++.++..|+.+...... ..+.+|
T Consensus 2 k~~lItG~s~g-iG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id 80 (252)
T PRK07677 2 KVVIITGGSSG-MGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFPGQVLTVQMDVRNPEDVQKMVEQIDEKFGRID 80 (252)
T ss_pred CEEEEeCCCCh-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCCcc
Confidence 56787777655 444444333 2345899999886544444333322 2478899999988643211 124689
Q ss_pred EEEEcCC
Q 024665 216 VIFSDVA 222 (264)
Q Consensus 216 ~V~~d~p 222 (264)
.|+.+..
T Consensus 81 ~lI~~ag 87 (252)
T PRK07677 81 ALINNAA 87 (252)
T ss_pred EEEECCC
Confidence 9998764
No 358
>KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only]
Probab=83.12 E-value=0.71 Score=40.09 Aligned_cols=93 Identities=13% Similarity=0.066 Sum_probs=58.5
Q ss_pred chHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHH---HHHHHHHhhcCCCeEEEEcCC
Q 024665 125 RSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRS---GRDLVNMAKKRTNVIPIIEDA 201 (264)
Q Consensus 125 ~s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~---~~~l~~~a~~~~nV~~i~~D~ 201 (264)
.+-++.+++..|+ +.++...+|+--|.|.-|..+.+.. ++.++||.|.+|-+ ++.+.+ ....+.++++.+..
T Consensus 28 VPVm~devl~~ls---pv~g~sf~DmTfGagGHt~~ilqk~-se~k~yalDrDP~A~~La~~~s~-el~~~~l~a~Lg~F 102 (303)
T KOG2782|consen 28 VPVMLDEVLDILS---PVRGRSFVDMTFGAGGHTSSILQKH-SELKNYALDRDPVARKLAHFHSD-ELMHPTLKAVLGNF 102 (303)
T ss_pred CceehhhHHHHcC---CCCCceEEEEeccCCcchHHHHHhC-cHhhhhhhccChHHHHHHHHhhH-hhcchhHHHHHhhh
Confidence 3456666666665 7889999999999999999999885 57789999999744 222221 11112333333333
Q ss_pred CCchhh----cccCCCccEEEEcCC
Q 024665 202 RHPAKY----RMLVGMVDVIFSDVA 222 (264)
Q Consensus 202 ~~~~~~----~~~~~~fD~V~~d~p 222 (264)
.+.++. ...+..||-|++|.-
T Consensus 103 s~~~~l~~~~gl~~~~vDGiLmDlG 127 (303)
T KOG2782|consen 103 SYIKSLIADTGLLDVGVDGILMDLG 127 (303)
T ss_pred HHHHHHHHHhCCCcCCcceEEeecC
Confidence 332211 123457888888755
No 359
>PRK07109 short chain dehydrogenase; Provisional
Probab=83.08 E-value=13 Score=33.82 Aligned_cols=79 Identities=10% Similarity=0.119 Sum_probs=48.8
Q ss_pred CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhhc-CCCeEEEEcCCCCchhhccc-------CCC
Q 024665 143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKK-RTNVIPIIEDARHPAKYRML-------VGM 213 (264)
Q Consensus 143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~~-~~nV~~i~~D~~~~~~~~~~-------~~~ 213 (264)
.+.+||=.|+.+ .+...+++.+ ....+|+.++.++..++++.+.... ..++.++..|+.+....... .+.
T Consensus 7 ~~k~vlITGas~-gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~~~~~~g~ 85 (334)
T PRK07109 7 GRQVVVITGASA-GVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGGEALAVVADVADAEAVQAAADRAEEELGP 85 (334)
T ss_pred CCCEEEEECCCC-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHHCCC
Confidence 356788777655 4555554433 2345899999886554444433322 23788999999886532111 247
Q ss_pred ccEEEEcCC
Q 024665 214 VDVIFSDVA 222 (264)
Q Consensus 214 fD~V~~d~p 222 (264)
+|+++.+..
T Consensus 86 iD~lInnAg 94 (334)
T PRK07109 86 IDTWVNNAM 94 (334)
T ss_pred CCEEEECCC
Confidence 899998765
No 360
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=82.63 E-value=2.4 Score=37.60 Aligned_cols=46 Identities=22% Similarity=0.117 Sum_probs=35.9
Q ss_pred CCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHh
Q 024665 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMA 188 (264)
Q Consensus 140 ~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a 188 (264)
.-.+++.|||--+|+|++.+++...- -..+++|+++...+...+..
T Consensus 219 ~s~~~diVlDpf~GsGtt~~aa~~~~---r~~ig~e~~~~y~~~~~~r~ 264 (302)
T COG0863 219 YSFPGDIVLDPFAGSGTTGIAAKNLG---RRFIGIEINPEYVEVALKRL 264 (302)
T ss_pred cCCCCCEEeecCCCCChHHHHHHHcC---CceEEEecCHHHHHHHHHHH
Confidence 56899999999999999998887762 37899999986654444433
No 361
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=82.61 E-value=2.7 Score=31.38 Aligned_cols=55 Identities=15% Similarity=0.102 Sum_probs=34.2
Q ss_pred EEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEcCC
Q 024665 146 RVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVA 222 (264)
Q Consensus 146 ~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p 222 (264)
+|| +.||+|..|+.++..+. +.++.. .-++++.+.+..+... ....+|+|++-|.
T Consensus 5 ~IL-l~C~~G~sSS~l~~k~~----------------~~~~~~--gi~~~v~a~~~~~~~~---~~~~~Dvill~pq 59 (95)
T TIGR00853 5 NIL-LLCAAGMSTSLLVNKMN----------------KAAEEY--GVPVKIAAGSYGAAGE---KLDDADVVLLAPQ 59 (95)
T ss_pred EEE-EECCCchhHHHHHHHHH----------------HHHHHC--CCcEEEEEecHHHHHh---hcCCCCEEEECch
Confidence 566 89999999888886642 212211 2256666666655442 2357899987654
No 362
>PRK12937 short chain dehydrogenase; Provisional
Probab=82.61 E-value=19 Score=30.38 Aligned_cols=79 Identities=14% Similarity=0.146 Sum_probs=45.6
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCC-CCEEEEEeCC-hHHHHHHHHHhh-cCCCeEEEEcCCCCchhhcc-------cCC
Q 024665 143 PGARVLYLGAASGTTVSHVSDIVGP-NGVVYAVEFS-HRSGRDLVNMAK-KRTNVIPIIEDARHPAKYRM-------LVG 212 (264)
Q Consensus 143 ~g~~VLDlG~G~G~~s~~la~~~~~-~g~V~avD~s-~~~~~~l~~~a~-~~~nV~~i~~D~~~~~~~~~-------~~~ 212 (264)
++.+||=.|+. |.+..++++.+-. ..+|+.+..+ +...+++.+... ...++.++..|+.+...... ..+
T Consensus 4 ~~~~vlItG~~-~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 82 (245)
T PRK12937 4 SNKVAIVTGAS-RGIGAAIARRLAADGFAVAVNYAGSAAAADELVAEIEAAGGRAIAVQADVADAAAVTRLFDAAETAFG 82 (245)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 45678888874 6666666655433 3467666554 322223333222 23478999999988643211 124
Q ss_pred CccEEEEcCC
Q 024665 213 MVDVIFSDVA 222 (264)
Q Consensus 213 ~fD~V~~d~p 222 (264)
.+|+|+.++.
T Consensus 83 ~id~vi~~ag 92 (245)
T PRK12937 83 RIDVLVNNAG 92 (245)
T ss_pred CCCEEEECCC
Confidence 6899998765
No 363
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=82.51 E-value=22 Score=30.01 Aligned_cols=79 Identities=14% Similarity=0.178 Sum_probs=48.2
Q ss_pred CCCEEEEEcccCChHHHHHHHHhC-CCCEEEEEeCChHHHHHHHHH-hhcCCCeEEEEcCCCCchhhccc-------CCC
Q 024665 143 PGARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNM-AKKRTNVIPIIEDARHPAKYRML-------VGM 213 (264)
Q Consensus 143 ~g~~VLDlG~G~G~~s~~la~~~~-~~g~V~avD~s~~~~~~l~~~-a~~~~nV~~i~~D~~~~~~~~~~-------~~~ 213 (264)
.+.+||=.|+ +|.+..+++..+- ...+|++++.++.....+.+. .....++.++..|+.+....... .+.
T Consensus 5 ~~~~ilItGa-sg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 83 (251)
T PRK12826 5 EGRVALVTGA-ARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAGGKARARQVDVRDRAALKAAVAAGVEDFGR 83 (251)
T ss_pred CCCEEEEcCC-CCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence 3567886665 5666666665442 234799999885433333322 22234689999999886432111 136
Q ss_pred ccEEEEcCC
Q 024665 214 VDVIFSDVA 222 (264)
Q Consensus 214 fD~V~~d~p 222 (264)
+|+|+..+.
T Consensus 84 ~d~vi~~ag 92 (251)
T PRK12826 84 LDILVANAG 92 (251)
T ss_pred CCEEEECCC
Confidence 899998875
No 364
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=82.49 E-value=21 Score=30.43 Aligned_cols=78 Identities=14% Similarity=0.227 Sum_probs=47.2
Q ss_pred CCEEEEEcccCChHHHHHHHHhC-CCCEEEEEeCChHHHHHHHHHhhc-CCCeEEEEcCCCCchhhcc-------cCCCc
Q 024665 144 GARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKK-RTNVIPIIEDARHPAKYRM-------LVGMV 214 (264)
Q Consensus 144 g~~VLDlG~G~G~~s~~la~~~~-~~g~V~avD~s~~~~~~l~~~a~~-~~nV~~i~~D~~~~~~~~~-------~~~~f 214 (264)
+.+||=.| ++|.+..+++..+- ....|+.++.++...+++.+.... ..++.+++.|+.+...... ....+
T Consensus 7 ~~~vlItG-asg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~ 85 (262)
T PRK13394 7 GKTAVVTG-AASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAGGKAIGVAMDVTNEDAVNAGIDKVAERFGSV 85 (262)
T ss_pred CCEEEEEC-CCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhcCceEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence 55777554 45566666665443 334799999986544343333222 2368889999988653211 12458
Q ss_pred cEEEEcCC
Q 024665 215 DVIFSDVA 222 (264)
Q Consensus 215 D~V~~d~p 222 (264)
|+|+.+..
T Consensus 86 d~vi~~ag 93 (262)
T PRK13394 86 DILVSNAG 93 (262)
T ss_pred CEEEECCc
Confidence 99988765
No 365
>PRK07102 short chain dehydrogenase; Provisional
Probab=82.46 E-value=17 Score=30.91 Aligned_cols=77 Identities=14% Similarity=0.148 Sum_probs=47.1
Q ss_pred CEEEEEcccCChHHHHHHHHhC-CCCEEEEEeCChHHHHHHHHHhhc--CCCeEEEEcCCCCchhhcc----cCCCccEE
Q 024665 145 ARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKK--RTNVIPIIEDARHPAKYRM----LVGMVDVI 217 (264)
Q Consensus 145 ~~VLDlG~G~G~~s~~la~~~~-~~g~V~avD~s~~~~~~l~~~a~~--~~nV~~i~~D~~~~~~~~~----~~~~fD~V 217 (264)
++||=.|+. |.+...++..+- ...+|++++.++.-.+++.+.... ..++++++.|+.+...... ....+|+|
T Consensus 2 ~~vlItGas-~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~d~v 80 (243)
T PRK07102 2 KKILIIGAT-SDIARACARRYAAAGARLYLAARDVERLERLADDLRARGAVAVSTHELDILDTASHAAFLDSLPALPDIV 80 (243)
T ss_pred cEEEEEcCC-cHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHHHHHHhhcCCEE
Confidence 367777754 566666555543 334899999986543333332222 2479999999998653211 12357999
Q ss_pred EEcCC
Q 024665 218 FSDVA 222 (264)
Q Consensus 218 ~~d~p 222 (264)
+.+..
T Consensus 81 v~~ag 85 (243)
T PRK07102 81 LIAVG 85 (243)
T ss_pred EECCc
Confidence 98754
No 366
>PRK06182 short chain dehydrogenase; Validated
Probab=82.34 E-value=18 Score=31.51 Aligned_cols=73 Identities=22% Similarity=0.226 Sum_probs=46.9
Q ss_pred CCEEEEEcccCChHHHHHHHHhC-CCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhccc-------CCCcc
Q 024665 144 GARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRML-------VGMVD 215 (264)
Q Consensus 144 g~~VLDlG~G~G~~s~~la~~~~-~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~-------~~~fD 215 (264)
+.+||=.|| +|.+..++++.+- ...+|++++.++..++++ . ..+++++..|+.+....... ...+|
T Consensus 3 ~k~vlItGa-sggiG~~la~~l~~~G~~V~~~~r~~~~l~~~---~--~~~~~~~~~Dv~~~~~~~~~~~~~~~~~~~id 76 (273)
T PRK06182 3 KKVALVTGA-SSGIGKATARRLAAQGYTVYGAARRVDKMEDL---A--SLGVHPLSLDVTDEASIKAAVDTIIAEEGRID 76 (273)
T ss_pred CCEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHH---H--hCCCeEEEeeCCCHHHHHHHHHHHHHhcCCCC
Confidence 457887775 5556777766553 345899999886443222 1 12588999999886532111 23689
Q ss_pred EEEEcCC
Q 024665 216 VIFSDVA 222 (264)
Q Consensus 216 ~V~~d~p 222 (264)
+|+.++.
T Consensus 77 ~li~~ag 83 (273)
T PRK06182 77 VLVNNAG 83 (273)
T ss_pred EEEECCC
Confidence 9998875
No 367
>PRK07024 short chain dehydrogenase; Provisional
Probab=82.31 E-value=6.5 Score=33.93 Aligned_cols=77 Identities=16% Similarity=0.147 Sum_probs=47.5
Q ss_pred CEEEEEcccCChHHHHHHHHhC-CCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcc-------cCCCccE
Q 024665 145 ARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRM-------LVGMVDV 216 (264)
Q Consensus 145 ~~VLDlG~G~G~~s~~la~~~~-~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~-------~~~~fD~ 216 (264)
.+||=.|+ ++.+...+++.+. ...+|+.++.+++.++++.+......++.++..|+++...... ..+.+|+
T Consensus 3 ~~vlItGa-s~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~g~id~ 81 (257)
T PRK07024 3 LKVFITGA-SSGIGQALAREYARQGATLGLVARRTDALQAFAARLPKAARVSVYAADVRDADALAAAAADFIAAHGLPDV 81 (257)
T ss_pred CEEEEEcC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcccCCeeEEEEcCCCCHHHHHHHHHHHHHhCCCCCE
Confidence 46777776 4555555555443 3348999999865544443333222278999999998653211 1235899
Q ss_pred EEEcCC
Q 024665 217 IFSDVA 222 (264)
Q Consensus 217 V~~d~p 222 (264)
|+.+..
T Consensus 82 lv~~ag 87 (257)
T PRK07024 82 VIANAG 87 (257)
T ss_pred EEECCC
Confidence 998765
No 368
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=82.23 E-value=7.4 Score=33.04 Aligned_cols=79 Identities=6% Similarity=0.103 Sum_probs=48.6
Q ss_pred CCCEEEEEcccCChHHHHHHHHhC-CCCEEEEEeCChHHHHHHHHHhhc-CCCeEEEEcCCCCchhhcc-------cCCC
Q 024665 143 PGARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKK-RTNVIPIIEDARHPAKYRM-------LVGM 213 (264)
Q Consensus 143 ~g~~VLDlG~G~G~~s~~la~~~~-~~g~V~avD~s~~~~~~l~~~a~~-~~nV~~i~~D~~~~~~~~~-------~~~~ 213 (264)
++.++|=.|+ +|.+...+++.+. ....|+.++.++...+++.+.... ..++.+++.|+.+...... ....
T Consensus 4 ~~~~~lItG~-~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 82 (253)
T PRK08217 4 KDKVIVITGG-AQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALGTEVRGYAANVTDEEDVEATFAQIAEDFGQ 82 (253)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 4668888886 4555555655442 335799999986544343333222 3478899999987542210 1146
Q ss_pred ccEEEEcCC
Q 024665 214 VDVIFSDVA 222 (264)
Q Consensus 214 fD~V~~d~p 222 (264)
+|+|+.++.
T Consensus 83 id~vi~~ag 91 (253)
T PRK08217 83 LNGLINNAG 91 (253)
T ss_pred CCEEEECCC
Confidence 899998765
No 369
>PRK08643 acetoin reductase; Validated
Probab=82.08 E-value=25 Score=30.06 Aligned_cols=77 Identities=13% Similarity=0.168 Sum_probs=46.3
Q ss_pred CEEEEEcccCChHHHHHHHHhC-CCCEEEEEeCChHHHHHHHHHhh-cCCCeEEEEcCCCCchhhcc-------cCCCcc
Q 024665 145 ARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAK-KRTNVIPIIEDARHPAKYRM-------LVGMVD 215 (264)
Q Consensus 145 ~~VLDlG~G~G~~s~~la~~~~-~~g~V~avD~s~~~~~~l~~~a~-~~~nV~~i~~D~~~~~~~~~-------~~~~fD 215 (264)
.+||=.|+.+| +..++++.+- ...+|+.++.++...+.+.+... ...++.++..|+.+...... ..+.+|
T Consensus 3 k~~lItGas~g-iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id 81 (256)
T PRK08643 3 KVALVTGAGQG-IGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKDGGKAIAVKADVSDRDQVFAAVRQVVDTFGDLN 81 (256)
T ss_pred CEEEEECCCCh-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCCCC
Confidence 46776665544 5555554442 34589999988654434333222 22368889999998653211 124689
Q ss_pred EEEEcCC
Q 024665 216 VIFSDVA 222 (264)
Q Consensus 216 ~V~~d~p 222 (264)
+|+.+..
T Consensus 82 ~vi~~ag 88 (256)
T PRK08643 82 VVVNNAG 88 (256)
T ss_pred EEEECCC
Confidence 9998764
No 370
>PRK08862 short chain dehydrogenase; Provisional
Probab=82.08 E-value=28 Score=29.69 Aligned_cols=79 Identities=13% Similarity=0.079 Sum_probs=49.0
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhc-CCCeEEEEcCCCCchhhccc-------CC-C
Q 024665 143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKK-RTNVIPIIEDARHPAKYRML-------VG-M 213 (264)
Q Consensus 143 ~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~-~~nV~~i~~D~~~~~~~~~~-------~~-~ 213 (264)
.+.++|=.|+++|.=...+..+.....+|+.++.++..++++.+.... ...+..+..|..+......+ .+ .
T Consensus 4 ~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~~ 83 (227)
T PRK08862 4 KSSIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQCSALTDNVYSFQLKDFSQESIRHLFDAIEQQFNRA 83 (227)
T ss_pred CCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCCeEEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence 356889899888773222222333456899998887655554443322 23577788888876532111 14 7
Q ss_pred ccEEEEcC
Q 024665 214 VDVIFSDV 221 (264)
Q Consensus 214 fD~V~~d~ 221 (264)
+|+++.+.
T Consensus 84 iD~li~na 91 (227)
T PRK08862 84 PDVLVNNW 91 (227)
T ss_pred CCEEEECC
Confidence 89999886
No 371
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=81.99 E-value=19 Score=30.78 Aligned_cols=79 Identities=14% Similarity=0.119 Sum_probs=50.4
Q ss_pred CCCEEEEEcccCChHHHHHHHHhC-CCCEEEEEeCChHHHHHHHHHhhc-CCCeEEEEcCCCCchhhcc-------cCCC
Q 024665 143 PGARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKK-RTNVIPIIEDARHPAKYRM-------LVGM 213 (264)
Q Consensus 143 ~g~~VLDlG~G~G~~s~~la~~~~-~~g~V~avD~s~~~~~~l~~~a~~-~~nV~~i~~D~~~~~~~~~-------~~~~ 213 (264)
.+.+||=.|+ +|.+...+++.+- ...+|+.++.++...+++.+.... ..++.++..|+.+...... ....
T Consensus 9 ~~k~vlItGa-~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 87 (255)
T PRK07523 9 TGRRALVTGS-SQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQGLSAHALAFDVTDHDAVRAAIDAFEAEIGP 87 (255)
T ss_pred CCCEEEEECC-cchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCceEEEEEccCCCHHHHHHHHHHHHHhcCC
Confidence 4678998885 5666666665543 345899999886554444333322 2358889999988653211 1246
Q ss_pred ccEEEEcCC
Q 024665 214 VDVIFSDVA 222 (264)
Q Consensus 214 fD~V~~d~p 222 (264)
+|+|+.++.
T Consensus 88 ~d~li~~ag 96 (255)
T PRK07523 88 IDILVNNAG 96 (255)
T ss_pred CCEEEECCC
Confidence 899998775
No 372
>PRK08265 short chain dehydrogenase; Provisional
Probab=81.92 E-value=13 Score=32.22 Aligned_cols=77 Identities=17% Similarity=0.170 Sum_probs=47.0
Q ss_pred CCCEEEEEcccCChHHHHHHHHhC-CCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcc-------cCCCc
Q 024665 143 PGARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRM-------LVGMV 214 (264)
Q Consensus 143 ~g~~VLDlG~G~G~~s~~la~~~~-~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~-------~~~~f 214 (264)
.+.+||=.|+.+ .+...+++.+- ...+|+.++.++...+++.+.. ..++++++.|+.+...... ....+
T Consensus 5 ~~k~vlItGas~-gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~i 81 (261)
T PRK08265 5 AGKVAIVTGGAT-LIGAAVARALVAAGARVAIVDIDADNGAAVAASL--GERARFIATDITDDAAIERAVATVVARFGRV 81 (261)
T ss_pred CCCEEEEECCCC-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh--CCeeEEEEecCCCHHHHHHHHHHHHHHhCCC
Confidence 356788777655 45555554432 3458999999865433333222 2368899999988643211 12468
Q ss_pred cEEEEcCC
Q 024665 215 DVIFSDVA 222 (264)
Q Consensus 215 D~V~~d~p 222 (264)
|+++.+..
T Consensus 82 d~lv~~ag 89 (261)
T PRK08265 82 DILVNLAC 89 (261)
T ss_pred CEEEECCC
Confidence 99998765
No 373
>PRK06180 short chain dehydrogenase; Provisional
Probab=81.91 E-value=16 Score=32.00 Aligned_cols=76 Identities=13% Similarity=0.121 Sum_probs=47.3
Q ss_pred CCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhccc-------CCCcc
Q 024665 144 GARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRML-------VGMVD 215 (264)
Q Consensus 144 g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~-------~~~fD 215 (264)
+.+||=.||.+ .+..++++.+ ....+|++++.++...+.+.+.. ..++.++..|+.+....... .+.+|
T Consensus 4 ~~~vlVtGasg-giG~~la~~l~~~G~~V~~~~r~~~~~~~l~~~~--~~~~~~~~~D~~d~~~~~~~~~~~~~~~~~~d 80 (277)
T PRK06180 4 MKTWLITGVSS-GFGRALAQAALAAGHRVVGTVRSEAARADFEALH--PDRALARLLDVTDFDAIDAVVADAEATFGPID 80 (277)
T ss_pred CCEEEEecCCC-hHHHHHHHHHHhCcCEEEEEeCCHHHHHHHHhhc--CCCeeEEEccCCCHHHHHHHHHHHHHHhCCCC
Confidence 45688777755 5555555544 23458999999875544433322 23688899999886532111 13589
Q ss_pred EEEEcCC
Q 024665 216 VIFSDVA 222 (264)
Q Consensus 216 ~V~~d~p 222 (264)
+|+.+..
T Consensus 81 ~vv~~ag 87 (277)
T PRK06180 81 VLVNNAG 87 (277)
T ss_pred EEEECCC
Confidence 9998765
No 374
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=81.86 E-value=8.3 Score=32.74 Aligned_cols=78 Identities=14% Similarity=0.197 Sum_probs=47.4
Q ss_pred CCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhccc-------CCCcc
Q 024665 144 GARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRML-------VGMVD 215 (264)
Q Consensus 144 g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~-------~~~fD 215 (264)
+.+||=.|+.. .+..++++.+ ....+|+.++.++.-.+++........++.++..|+.+....... ...+|
T Consensus 5 ~~~vlItGasg-~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d 83 (251)
T PRK07231 5 GKVAIVTGASS-GIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILAGGRAIAVAADVSDEADVEAAVAAALERFGSVD 83 (251)
T ss_pred CcEEEEECCCC-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCCCC
Confidence 45777777654 4444444433 234579999999654434333322234688999999886543111 13689
Q ss_pred EEEEcCC
Q 024665 216 VIFSDVA 222 (264)
Q Consensus 216 ~V~~d~p 222 (264)
+|+.+..
T Consensus 84 ~vi~~ag 90 (251)
T PRK07231 84 ILVNNAG 90 (251)
T ss_pred EEEECCC
Confidence 9998765
No 375
>PRK07062 short chain dehydrogenase; Provisional
Probab=81.80 E-value=12 Score=32.22 Aligned_cols=79 Identities=13% Similarity=0.122 Sum_probs=48.1
Q ss_pred CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhhc---CCCeEEEEcCCCCchhhcc-------cC
Q 024665 143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKK---RTNVIPIIEDARHPAKYRM-------LV 211 (264)
Q Consensus 143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~~---~~nV~~i~~D~~~~~~~~~-------~~ 211 (264)
.+.++|=.|+.+|. ...+++.+ ....+|+.++.++...++..+.... ..++.++..|+.+...... ..
T Consensus 7 ~~k~~lItGas~gi-G~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 85 (265)
T PRK07062 7 EGRVAVVTGGSSGI-GLATVELLLEAGASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEARF 85 (265)
T ss_pred CCCEEEEeCCCchH-HHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHHhc
Confidence 46788888876654 33444333 3346899999986544333332222 1368889999988653211 12
Q ss_pred CCccEEEEcCC
Q 024665 212 GMVDVIFSDVA 222 (264)
Q Consensus 212 ~~fD~V~~d~p 222 (264)
+.+|+++.++.
T Consensus 86 g~id~li~~Ag 96 (265)
T PRK07062 86 GGVDMLVNNAG 96 (265)
T ss_pred CCCCEEEECCC
Confidence 46899998765
No 376
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=81.71 E-value=1.8 Score=38.80 Aligned_cols=38 Identities=21% Similarity=0.071 Sum_probs=30.7
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHH
Q 024665 142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSG 181 (264)
Q Consensus 142 ~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~ 181 (264)
-.+.+|||+|||++...+.+... ....|...|++...+
T Consensus 115 ~~~k~vLELgCg~~Lp~i~~~~~--~~~~~~fqD~na~vl 152 (282)
T KOG2920|consen 115 FSGKRVLELGCGAALPGIFAFVK--GAVSVHFQDFNAEVL 152 (282)
T ss_pred ecCceeEecCCcccccchhhhhh--ccceeeeEecchhhe
Confidence 46789999999999999988766 346788889886553
No 377
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=81.69 E-value=5.7 Score=39.78 Aligned_cols=87 Identities=15% Similarity=0.120 Sum_probs=53.6
Q ss_pred CEEEEEcccCChHHHHHHHHhCCC-CEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhc-ccCCCccEEEEcCC
Q 024665 145 ARVLYLGAASGTTVSHVSDIVGPN-GVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYR-MLVGMVDVIFSDVA 222 (264)
Q Consensus 145 ~~VLDlG~G~G~~s~~la~~~~~~-g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~-~~~~~fD~V~~d~p 222 (264)
.+|+= ||-|.++..+++..... -.++.+|.+++..+.+ ++ ....++.+|++++...+ .-.+.+|+|++-..
T Consensus 401 ~~vII--~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~----~~-~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~ 473 (621)
T PRK03562 401 PRVII--AGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETL----RK-FGMKVFYGDATRMDLLESAGAAKAEVLINAID 473 (621)
T ss_pred CcEEE--EecChHHHHHHHHHHhCCCCEEEEECCHHHHHHH----Hh-cCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeC
Confidence 45655 45566777777655433 3799999998654333 22 35789999999976432 22357899998776
Q ss_pred CchHHHHH--HHHHhCCC
Q 024665 223 QPDQVCFL--CLILFQPI 238 (264)
Q Consensus 223 ~~~~~~~~--~~~~l~~~ 238 (264)
.++..... ..+.+.|.
T Consensus 474 d~~~n~~i~~~ar~~~p~ 491 (621)
T PRK03562 474 DPQTSLQLVELVKEHFPH 491 (621)
T ss_pred CHHHHHHHHHHHHHhCCC
Confidence 55443332 33344454
No 378
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=81.42 E-value=9 Score=33.23 Aligned_cols=80 Identities=16% Similarity=0.203 Sum_probs=49.1
Q ss_pred CCCEEEEEcccCC-hHHHHHHHHhC-CCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcc-------cCCC
Q 024665 143 PGARVLYLGAASG-TTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRM-------LVGM 213 (264)
Q Consensus 143 ~g~~VLDlG~G~G-~~s~~la~~~~-~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~-------~~~~ 213 (264)
.+.+||=.|+++| .+...+|+.+- ...+|+.++.+.+..+.+.+.+.....+.++..|+.+...... ..+.
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~ 88 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEELDAPIFLPLDVREPGQLEAVFARIAEEWGR 88 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhhccceEEecCcCCHHHHHHHHHHHHHHcCC
Confidence 4678999999873 66666665543 2357888888754322222322222345678899988643211 1246
Q ss_pred ccEEEEcCC
Q 024665 214 VDVIFSDVA 222 (264)
Q Consensus 214 fD~V~~d~p 222 (264)
+|+++.++.
T Consensus 89 ld~lv~nAg 97 (258)
T PRK07533 89 LDFLLHSIA 97 (258)
T ss_pred CCEEEEcCc
Confidence 899998864
No 379
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=81.03 E-value=32 Score=29.47 Aligned_cols=78 Identities=12% Similarity=0.188 Sum_probs=45.8
Q ss_pred CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHh-hcCCCeEEEEcCCCCchhhccc-------CCC
Q 024665 143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMA-KKRTNVIPIIEDARHPAKYRML-------VGM 213 (264)
Q Consensus 143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a-~~~~nV~~i~~D~~~~~~~~~~-------~~~ 213 (264)
.+.+||=.|+++|. ...+++.+ ....+|+.++.+... +++.+.. ....++.++..|+.+....... .+.
T Consensus 14 ~~k~vlItGas~gI-G~~ia~~l~~~G~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~g~ 91 (258)
T PRK06935 14 DGKVAIVTGGNTGL-GQGYAVALAKAGADIIITTHGTNW-DETRRLIEKEGRKVTFVQVDLTKPESAEKVVKEALEEFGK 91 (258)
T ss_pred CCCEEEEeCCCchH-HHHHHHHHHHCCCEEEEEeCCcHH-HHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 46789988886654 44444333 334578888777322 2222222 1234688999999886532111 236
Q ss_pred ccEEEEcCC
Q 024665 214 VDVIFSDVA 222 (264)
Q Consensus 214 fD~V~~d~p 222 (264)
+|+|+.+..
T Consensus 92 id~li~~ag 100 (258)
T PRK06935 92 IDILVNNAG 100 (258)
T ss_pred CCEEEECCC
Confidence 899998764
No 380
>PRK06701 short chain dehydrogenase; Provisional
Probab=80.95 E-value=16 Score=32.43 Aligned_cols=79 Identities=18% Similarity=0.226 Sum_probs=45.3
Q ss_pred CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCCh-HHHHHHHHHhhc-CCCeEEEEcCCCCchhhccc-------CC
Q 024665 143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSH-RSGRDLVNMAKK-RTNVIPIIEDARHPAKYRML-------VG 212 (264)
Q Consensus 143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~-~~~~~l~~~a~~-~~nV~~i~~D~~~~~~~~~~-------~~ 212 (264)
++.+||=.|++.| +...++..+ ....+|+.++.+. ...+.+.+.... ..++.++..|+.+......+ ..
T Consensus 45 ~~k~iLItGasgg-IG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~~ 123 (290)
T PRK06701 45 KGKVALITGGDSG-IGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVSDEAFCKDAVEETVRELG 123 (290)
T ss_pred CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 4667888887554 455544433 2345788888763 222222222221 23688999999885532111 13
Q ss_pred CccEEEEcCC
Q 024665 213 MVDVIFSDVA 222 (264)
Q Consensus 213 ~fD~V~~d~p 222 (264)
.+|+|+.++.
T Consensus 124 ~iD~lI~~Ag 133 (290)
T PRK06701 124 RLDILVNNAA 133 (290)
T ss_pred CCCEEEECCc
Confidence 6899997754
No 381
>PRK06914 short chain dehydrogenase; Provisional
Probab=80.88 E-value=25 Score=30.55 Aligned_cols=78 Identities=15% Similarity=0.132 Sum_probs=46.7
Q ss_pred CCEEEEEcccCChHHHHHHHH-hCCCCEEEEEeCChHHHHHHHHHhhc---CCCeEEEEcCCCCchhhcc------cCCC
Q 024665 144 GARVLYLGAASGTTVSHVSDI-VGPNGVVYAVEFSHRSGRDLVNMAKK---RTNVIPIIEDARHPAKYRM------LVGM 213 (264)
Q Consensus 144 g~~VLDlG~G~G~~s~~la~~-~~~~g~V~avD~s~~~~~~l~~~a~~---~~nV~~i~~D~~~~~~~~~------~~~~ 213 (264)
+.+||=.|+..+ +...+++. .....+|++++.++...+++.+.... ..+++++..|+.+...... ....
T Consensus 3 ~k~~lItGasg~-iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~ 81 (280)
T PRK06914 3 KKIAIVTGASSG-FGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQLVLKEIGR 81 (280)
T ss_pred CCEEEEECCCch-HHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHHHHHHhcCC
Confidence 346777775554 45554433 33445899999886544443332221 2378999999998653211 1246
Q ss_pred ccEEEEcCC
Q 024665 214 VDVIFSDVA 222 (264)
Q Consensus 214 fD~V~~d~p 222 (264)
+|+|+.++.
T Consensus 82 id~vv~~ag 90 (280)
T PRK06914 82 IDLLVNNAG 90 (280)
T ss_pred eeEEEECCc
Confidence 799998765
No 382
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=80.79 E-value=1.2 Score=41.45 Aligned_cols=38 Identities=26% Similarity=0.281 Sum_probs=29.5
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChH
Q 024665 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHR 179 (264)
Q Consensus 141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~ 179 (264)
+.|. .|||+|+|+|+-..++-+.+..-..++-+|.|+.
T Consensus 112 fapq-siLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~ 149 (484)
T COG5459 112 FAPQ-SILDVGAGPGTGLWALNDIWPDLKSAVILEASPA 149 (484)
T ss_pred cCcc-hhhccCCCCchhhhhhcccCCCchhhhhhccCHH
Confidence 4443 4999999999998888888754456888888863
No 383
>PRK06125 short chain dehydrogenase; Provisional
Probab=80.61 E-value=30 Score=29.72 Aligned_cols=79 Identities=18% Similarity=0.207 Sum_probs=48.7
Q ss_pred CCCEEEEEcccCChHHHHHHHHhC-CCCEEEEEeCChHHHHHHHHHhhc--CCCeEEEEcCCCCchhhcc---cCCCccE
Q 024665 143 PGARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKK--RTNVIPIIEDARHPAKYRM---LVGMVDV 216 (264)
Q Consensus 143 ~g~~VLDlG~G~G~~s~~la~~~~-~~g~V~avD~s~~~~~~l~~~a~~--~~nV~~i~~D~~~~~~~~~---~~~~fD~ 216 (264)
.+.+||=.|+.+| +...++..+. ...+|+.++.++...+++.+.... ..++.++..|+.+...... ....+|+
T Consensus 6 ~~k~vlItG~~~g-iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~id~ 84 (259)
T PRK06125 6 AGKRVLITGASKG-IGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAHGVDVAVHALDLSSPEAREQLAAEAGDIDI 84 (259)
T ss_pred CCCEEEEeCCCch-HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHhCCCCE
Confidence 3567888886544 5555554432 345899999886554444333222 2368889999987643211 1257899
Q ss_pred EEEcCC
Q 024665 217 IFSDVA 222 (264)
Q Consensus 217 V~~d~p 222 (264)
++.++.
T Consensus 85 lv~~ag 90 (259)
T PRK06125 85 LVNNAG 90 (259)
T ss_pred EEECCC
Confidence 998764
No 384
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=80.57 E-value=3.8 Score=31.23 Aligned_cols=56 Identities=13% Similarity=0.112 Sum_probs=32.2
Q ss_pred EEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEcC
Q 024665 146 RVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDV 221 (264)
Q Consensus 146 ~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~ 221 (264)
+|| +.||+|..|+.++..+. +.++.. .-.+++.+.+..+...+ .....+|+|++-|
T Consensus 3 kIL-lvCg~G~STSlla~k~k----------------~~~~e~--gi~~~i~a~~~~e~~~~-~~~~~~DvIll~P 58 (104)
T PRK09590 3 KAL-IICAAGMSSSMMAKKTT----------------EYLKEQ--GKDIEVDAITATEGEKA-IAAAEYDLYLVSP 58 (104)
T ss_pred EEE-EECCCchHHHHHHHHHH----------------HHHHHC--CCceEEEEecHHHHHHh-hccCCCCEEEECh
Confidence 454 89999999998887742 212221 12456666665544321 0123589888743
No 385
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=80.36 E-value=1.7 Score=38.67 Aligned_cols=79 Identities=16% Similarity=0.157 Sum_probs=41.4
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHH-------------------Hh-----------hcC
Q 024665 142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVN-------------------MA-----------KKR 191 (264)
Q Consensus 142 ~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~-------------------~a-----------~~~ 191 (264)
..+.++||+|||+=......|.. ---.|+..|+++.-.+++.+ .. +.+
T Consensus 55 ~~g~~llDiGsGPtiy~~lsa~~--~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR 132 (256)
T PF01234_consen 55 VKGETLLDIGSGPTIYQLLSACE--WFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLR 132 (256)
T ss_dssp S-EEEEEEES-TT--GGGTTGGG--TEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHhhhhHHH--hhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHH
Confidence 35789999999995543333322 12379999998544322211 00 011
Q ss_pred CCeE-EEEcCCCCchhhcc---cCCCccEEEEcCC
Q 024665 192 TNVI-PIIEDARHPAKYRM---LVGMVDVIFSDVA 222 (264)
Q Consensus 192 ~nV~-~i~~D~~~~~~~~~---~~~~fD~V~~d~p 222 (264)
..|+ ++..|+++..+... +..+||+|++-.-
T Consensus 133 ~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fc 167 (256)
T PF01234_consen 133 RAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFC 167 (256)
T ss_dssp HHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESS
T ss_pred HhhceEEEeeccCCCCCCccccCccchhhhhhhHH
Confidence 1343 77889988765432 2335999997544
No 386
>PLN02427 UDP-apiose/xylose synthase
Probab=80.34 E-value=5.2 Score=37.06 Aligned_cols=77 Identities=16% Similarity=0.145 Sum_probs=49.8
Q ss_pred CEEEEEcccCChHHHHHHHHhCCC--CEEEEEeCChHHHHHHHHHh--hcCCCeEEEEcCCCCchhhcccCCCccEEEEc
Q 024665 145 ARVLYLGAASGTTVSHVSDIVGPN--GVVYAVEFSHRSGRDLVNMA--KKRTNVIPIIEDARHPAKYRMLVGMVDVIFSD 220 (264)
Q Consensus 145 ~~VLDlG~G~G~~s~~la~~~~~~--g~V~avD~s~~~~~~l~~~a--~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d 220 (264)
++|| |--|+|.+..++++.+-.. -+|+++|.+......+.... ....+++++.+|+++..........+|+||.-
T Consensus 15 ~~Vl-VTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~d~ViHl 93 (386)
T PLN02427 15 LTIC-MIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKMADLTINL 93 (386)
T ss_pred cEEE-EECCcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhccccccCCCCeEEEEcCCCChHHHHHHhhcCCEEEEc
Confidence 5687 5557899999998876543 47999997743322222111 01237999999999865443334468999865
Q ss_pred CC
Q 024665 221 VA 222 (264)
Q Consensus 221 ~p 222 (264)
..
T Consensus 94 Aa 95 (386)
T PLN02427 94 AA 95 (386)
T ss_pred cc
Confidence 43
No 387
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=80.32 E-value=4.4 Score=32.17 Aligned_cols=39 Identities=26% Similarity=0.241 Sum_probs=23.2
Q ss_pred EEcccCC--hHHHHHH-HHhCCCCEEEEEeCChHHHHHHHHH
Q 024665 149 YLGAASG--TTVSHVS-DIVGPNGVVYAVEFSHRSGRDLVNM 187 (264)
Q Consensus 149 DlG~G~G--~~s~~la-~~~~~~g~V~avD~s~~~~~~l~~~ 187 (264)
|+||..| ..+..++ ....+.++|+++|-++...+.+...
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~ 42 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRN 42 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHH
Confidence 8999999 5555443 2566788999999998776555444
No 388
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=80.17 E-value=8.7 Score=34.08 Aligned_cols=79 Identities=14% Similarity=0.044 Sum_probs=52.3
Q ss_pred CCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcc-cCCCccEEE
Q 024665 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRM-LVGMVDVIF 218 (264)
Q Consensus 140 ~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~-~~~~fD~V~ 218 (264)
.+.++.+ |...|||=-++.++... +-++.++|+.+.=+..+.++-....||.+.+.|-........ ..+.=-+|+
T Consensus 86 ~lN~~~~-l~~YpGSP~lA~~llR~---qDRl~l~ELHp~D~~~L~~~f~~d~~vrv~~~DG~~~l~a~LPP~erRglVL 161 (279)
T COG2961 86 QLNPGGG-LRYYPGSPLLARQLLRE---QDRLVLTELHPSDAPLLRNNFAGDRRVRVLRGDGFLALKAHLPPKERRGLVL 161 (279)
T ss_pred HhCCCCC-cccCCCCHHHHHHHcch---hceeeeeecCccHHHHHHHHhCCCcceEEEecCcHHHHhhhCCCCCcceEEE
Confidence 3556555 99999998888877754 448999999864433333333334499999999765332111 123457899
Q ss_pred EcCC
Q 024665 219 SDVA 222 (264)
Q Consensus 219 ~d~p 222 (264)
.|||
T Consensus 162 IDPP 165 (279)
T COG2961 162 IDPP 165 (279)
T ss_pred eCCC
Confidence 9999
No 389
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=80.05 E-value=24 Score=31.95 Aligned_cols=42 Identities=21% Similarity=0.285 Sum_probs=26.2
Q ss_pred ccCCCCCCEEEEEcccC-ChHHHHHHHHhCCCCEEEEEeCChHH
Q 024665 138 NIWIKPGARVLYLGAAS-GTTVSHVSDIVGPNGVVYAVEFSHRS 180 (264)
Q Consensus 138 ~~~l~~g~~VLDlG~G~-G~~s~~la~~~~~~g~V~avD~s~~~ 180 (264)
+....++++||=.|||+ |..++.+|...+ ..+|+++|.+++-
T Consensus 164 ~~~~~~g~~VlV~G~G~vG~~aiqlak~~G-~~~Vi~~~~~~~~ 206 (343)
T PRK09880 164 QAGDLQGKRVFVSGVGPIGCLIVAAVKTLG-AAEIVCADVSPRS 206 (343)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEEeCCHHH
Confidence 33456899999887631 224444555543 2379999998643
No 390
>PRK05866 short chain dehydrogenase; Provisional
Probab=80.04 E-value=11 Score=33.61 Aligned_cols=78 Identities=17% Similarity=0.209 Sum_probs=48.2
Q ss_pred CCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhhc-CCCeEEEEcCCCCchhhcc-------cCCCc
Q 024665 144 GARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKK-RTNVIPIIEDARHPAKYRM-------LVGMV 214 (264)
Q Consensus 144 g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~~-~~nV~~i~~D~~~~~~~~~-------~~~~f 214 (264)
+.+||=.|+++ .+...+++.+ ....+|+.++.++..++++.+.... ...+.++..|+.+...... ..+.+
T Consensus 40 ~k~vlItGasg-gIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~g~i 118 (293)
T PRK05866 40 GKRILLTGASS-GIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAGGDAMAVPCDLSDLDAVDALVADVEKRIGGV 118 (293)
T ss_pred CCEEEEeCCCc-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 46788888755 4455554433 3345899999986554444333222 2367889999988642211 12478
Q ss_pred cEEEEcCC
Q 024665 215 DVIFSDVA 222 (264)
Q Consensus 215 D~V~~d~p 222 (264)
|+|+.++.
T Consensus 119 d~li~~AG 126 (293)
T PRK05866 119 DILINNAG 126 (293)
T ss_pred CEEEECCC
Confidence 99998765
No 391
>PRK07890 short chain dehydrogenase; Provisional
Probab=80.03 E-value=16 Score=31.28 Aligned_cols=79 Identities=10% Similarity=0.066 Sum_probs=48.3
Q ss_pred CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhh-cCCCeEEEEcCCCCchhhcc-------cCCC
Q 024665 143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAK-KRTNVIPIIEDARHPAKYRM-------LVGM 213 (264)
Q Consensus 143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~-~~~nV~~i~~D~~~~~~~~~-------~~~~ 213 (264)
++.+||=.|+.+ .+..+++..+ ....+|+.++.++...+++.+... ...++.++..|+.+...... ..+.
T Consensus 4 ~~k~vlItGa~~-~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 82 (258)
T PRK07890 4 KGKVVVVSGVGP-GLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLGRRALAVPTDITDEDQCANLVALALERFGR 82 (258)
T ss_pred CCCEEEEECCCC-cHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHHHcCC
Confidence 456788777754 5555554433 234589999998654444333322 23478999999987643210 1246
Q ss_pred ccEEEEcCC
Q 024665 214 VDVIFSDVA 222 (264)
Q Consensus 214 fD~V~~d~p 222 (264)
+|+|+.+..
T Consensus 83 ~d~vi~~ag 91 (258)
T PRK07890 83 VDALVNNAF 91 (258)
T ss_pred ccEEEECCc
Confidence 899998764
No 392
>PRK08628 short chain dehydrogenase; Provisional
Probab=80.01 E-value=18 Score=31.00 Aligned_cols=79 Identities=13% Similarity=0.068 Sum_probs=46.7
Q ss_pred CCCEEEEEcccCChHHHHHHHHhC-CCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhccc-------CCCc
Q 024665 143 PGARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRML-------VGMV 214 (264)
Q Consensus 143 ~g~~VLDlG~G~G~~s~~la~~~~-~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~-------~~~f 214 (264)
.+.+||=.|+. |.+..+++..+- ....|+.++.++...+...+......+++++..|+.+....... .+.+
T Consensus 6 ~~~~ilItGas-ggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 84 (258)
T PRK08628 6 KDKVVIVTGGA-SGIGAAISLRLAEEGAIPVIFGRSAPDDEFAEELRALQPRAEFVQVDLTDDAQCRDAVEQTVAKFGRI 84 (258)
T ss_pred CCCEEEEeCCC-ChHHHHHHHHHHHcCCcEEEEcCChhhHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhcCCC
Confidence 35678877765 556665554442 34568888877543322122222234789999999886532111 1468
Q ss_pred cEEEEcCC
Q 024665 215 DVIFSDVA 222 (264)
Q Consensus 215 D~V~~d~p 222 (264)
|.|+.++.
T Consensus 85 d~vi~~ag 92 (258)
T PRK08628 85 DGLVNNAG 92 (258)
T ss_pred CEEEECCc
Confidence 99998765
No 393
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=79.98 E-value=6.4 Score=39.24 Aligned_cols=82 Identities=11% Similarity=0.028 Sum_probs=53.6
Q ss_pred ccCChHHHHHHHHhCC-CCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcc-cCCCccEEEEcCCCchHHHH
Q 024665 152 AASGTTVSHVSDIVGP-NGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRM-LVGMVDVIFSDVAQPDQVCF 229 (264)
Q Consensus 152 ~G~G~~s~~la~~~~~-~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~-~~~~fD~V~~d~p~~~~~~~ 229 (264)
||.|.++..+++.+.. .-.++.+|.+++..+++ .. ....++.+|+++....+. -.+++|+|++-.+.++....
T Consensus 406 ~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~----~~-~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~d~~~n~~ 480 (601)
T PRK03659 406 VGFGRFGQVIGRLLMANKMRITVLERDISAVNLM----RK-YGYKVYYGDATQLELLRAAGAEKAEAIVITCNEPEDTMK 480 (601)
T ss_pred ecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHH----Hh-CCCeEEEeeCCCHHHHHhcCCccCCEEEEEeCCHHHHHH
Confidence 6777888888876543 34799999998654333 22 357899999999764322 24589999988776554433
Q ss_pred H--HHHHhCCC
Q 024665 230 L--CLILFQPI 238 (264)
Q Consensus 230 ~--~~~~l~~~ 238 (264)
. ..+.+.|.
T Consensus 481 i~~~~r~~~p~ 491 (601)
T PRK03659 481 IVELCQQHFPH 491 (601)
T ss_pred HHHHHHHHCCC
Confidence 3 33344444
No 394
>PRK06500 short chain dehydrogenase; Provisional
Probab=79.95 E-value=22 Score=30.09 Aligned_cols=77 Identities=17% Similarity=0.111 Sum_probs=45.5
Q ss_pred CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhc-------ccCCCc
Q 024665 143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYR-------MLVGMV 214 (264)
Q Consensus 143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~-------~~~~~f 214 (264)
++.+||=.|+.. .+..++++.+ ....+|+.++.++...+++.+.. ..++.+++.|..+..... ...+.+
T Consensus 5 ~~k~vlItGasg-~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 81 (249)
T PRK06500 5 QGKTALITGGTS-GIGLETARQFLAEGARVAITGRDPASLEAARAEL--GESALVIRADAGDVAAQKALAQALAEAFGRL 81 (249)
T ss_pred CCCEEEEeCCCc-hHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHh--CCceEEEEecCCCHHHHHHHHHHHHHHhCCC
Confidence 355777777654 4444444433 33458999998864433332222 236788899988754221 112468
Q ss_pred cEEEEcCC
Q 024665 215 DVIFSDVA 222 (264)
Q Consensus 215 D~V~~d~p 222 (264)
|+|+.++.
T Consensus 82 d~vi~~ag 89 (249)
T PRK06500 82 DAVFINAG 89 (249)
T ss_pred CEEEECCC
Confidence 99998765
No 395
>PRK07791 short chain dehydrogenase; Provisional
Probab=79.91 E-value=38 Score=29.91 Aligned_cols=81 Identities=15% Similarity=0.161 Sum_probs=47.7
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCCh---------HHHHHHHHHhh-cCCCeEEEEcCCCCchhhc---
Q 024665 142 KPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSH---------RSGRDLVNMAK-KRTNVIPIIEDARHPAKYR--- 208 (264)
Q Consensus 142 ~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~---------~~~~~l~~~a~-~~~nV~~i~~D~~~~~~~~--- 208 (264)
-.+.++|=.|+++|.=......+.....+|+.++.+. +.++++.+... ...++.++..|+.+.....
T Consensus 4 l~~k~~lITGas~GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~ 83 (286)
T PRK07791 4 LDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGEAVANGDDIADWDGAANLV 83 (286)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhcCCceEEEeCCCCCHHHHHHHH
Confidence 3567899999877653333333333345788887653 33333333222 2236888999998854221
Q ss_pred ----ccCCCccEEEEcCC
Q 024665 209 ----MLVGMVDVIFSDVA 222 (264)
Q Consensus 209 ----~~~~~fD~V~~d~p 222 (264)
...+.+|+++.++.
T Consensus 84 ~~~~~~~g~id~lv~nAG 101 (286)
T PRK07791 84 DAAVETFGGLDVLVNNAG 101 (286)
T ss_pred HHHHHhcCCCCEEEECCC
Confidence 11257899998765
No 396
>PRK09242 tropinone reductase; Provisional
Probab=79.77 E-value=23 Score=30.36 Aligned_cols=79 Identities=14% Similarity=0.129 Sum_probs=48.0
Q ss_pred CCCEEEEEcccCChHHHHHHHH-hCCCCEEEEEeCChHHHHHHHHHhhc---CCCeEEEEcCCCCchhhc-------ccC
Q 024665 143 PGARVLYLGAASGTTVSHVSDI-VGPNGVVYAVEFSHRSGRDLVNMAKK---RTNVIPIIEDARHPAKYR-------MLV 211 (264)
Q Consensus 143 ~g~~VLDlG~G~G~~s~~la~~-~~~~g~V~avD~s~~~~~~l~~~a~~---~~nV~~i~~D~~~~~~~~-------~~~ 211 (264)
.+.++|=.|+.+|. ...+++. .....+|+.++.+++..+++.+.... ..++.++..|+.+..... ...
T Consensus 8 ~~k~~lItGa~~gI-G~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 86 (257)
T PRK09242 8 DGQTALITGASKGI-GLAIAREFLGLGADVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVEDHW 86 (257)
T ss_pred CCCEEEEeCCCchH-HHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 46788888886554 4444433 33345899999886554444333221 236888999998754211 112
Q ss_pred CCccEEEEcCC
Q 024665 212 GMVDVIFSDVA 222 (264)
Q Consensus 212 ~~fD~V~~d~p 222 (264)
+.+|+|+.+..
T Consensus 87 g~id~li~~ag 97 (257)
T PRK09242 87 DGLHILVNNAG 97 (257)
T ss_pred CCCCEEEECCC
Confidence 46899988765
No 397
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=78.61 E-value=14 Score=32.19 Aligned_cols=79 Identities=10% Similarity=0.150 Sum_probs=47.8
Q ss_pred CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhhc-CCCeEEEEcCCCCchhhccc-------CCC
Q 024665 143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKK-RTNVIPIIEDARHPAKYRML-------VGM 213 (264)
Q Consensus 143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~~-~~nV~~i~~D~~~~~~~~~~-------~~~ 213 (264)
.+.+||=.|+..|. ...++..+ .....|+.++.++...+++.+.... ..++.++..|+.+....... .+.
T Consensus 9 ~~k~vlVtGas~gi-G~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~ 87 (278)
T PRK08277 9 KGKVAVITGGGGVL-GGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAAGGEALAVKADVLDKESLEQARQQILEDFGP 87 (278)
T ss_pred CCCEEEEeCCCchH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 35677777776554 44444333 3345899999886544444333222 23688999999886432111 247
Q ss_pred ccEEEEcCC
Q 024665 214 VDVIFSDVA 222 (264)
Q Consensus 214 fD~V~~d~p 222 (264)
+|+|+.++.
T Consensus 88 id~li~~ag 96 (278)
T PRK08277 88 CDILINGAG 96 (278)
T ss_pred CCEEEECCC
Confidence 899998765
No 398
>PRK05876 short chain dehydrogenase; Provisional
Probab=78.57 E-value=28 Score=30.56 Aligned_cols=79 Identities=27% Similarity=0.348 Sum_probs=48.3
Q ss_pred CCCEEEEEcccCChHHHHHHHHhC-CCCEEEEEeCChHHHHHHHHHhh-cCCCeEEEEcCCCCchhhcc-------cCCC
Q 024665 143 PGARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAK-KRTNVIPIIEDARHPAKYRM-------LVGM 213 (264)
Q Consensus 143 ~g~~VLDlG~G~G~~s~~la~~~~-~~g~V~avD~s~~~~~~l~~~a~-~~~nV~~i~~D~~~~~~~~~-------~~~~ 213 (264)
.+.+||=.|+.+| +..++++.+- ...+|+.++.++..++++.+... ...++.++..|+.+...... ..+.
T Consensus 5 ~~k~vlVTGas~g-IG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 83 (275)
T PRK05876 5 PGRGAVITGGASG-IGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEGFDVHGVMCDVRHREEVTHLADEAFRLLGH 83 (275)
T ss_pred CCCEEEEeCCCch-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence 4567887887654 4555554432 33579999988654444433222 22368889999988653211 1246
Q ss_pred ccEEEEcCC
Q 024665 214 VDVIFSDVA 222 (264)
Q Consensus 214 fD~V~~d~p 222 (264)
+|+|+.+..
T Consensus 84 id~li~nAg 92 (275)
T PRK05876 84 VDVVFSNAG 92 (275)
T ss_pred CCEEEECCC
Confidence 899998775
No 399
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=78.35 E-value=28 Score=29.60 Aligned_cols=76 Identities=9% Similarity=0.111 Sum_probs=46.4
Q ss_pred EEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhh-cCCCeEEEEcCCCCchhhcc-------cCCCccE
Q 024665 146 RVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAK-KRTNVIPIIEDARHPAKYRM-------LVGMVDV 216 (264)
Q Consensus 146 ~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~-~~~nV~~i~~D~~~~~~~~~-------~~~~fD~ 216 (264)
+||=.|+ +|.+..++++.+ ....+|+.++.++...+++.+... ...++.++..|+.+...... .....|+
T Consensus 2 ~~lItG~-sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id~ 80 (254)
T TIGR02415 2 VALVTGG-AQGIGKGIAERLAKDGFAVAVADLNEETAKETAKEINQAGGKAVAYKLDVSDKDQVFSAIDQAAEKFGGFDV 80 (254)
T ss_pred EEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCCE
Confidence 4666675 466666655444 334589999988654444433322 23478899999988653211 1236799
Q ss_pred EEEcCC
Q 024665 217 IFSDVA 222 (264)
Q Consensus 217 V~~d~p 222 (264)
|+.+..
T Consensus 81 vi~~ag 86 (254)
T TIGR02415 81 MVNNAG 86 (254)
T ss_pred EEECCC
Confidence 998765
No 400
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.30 E-value=1.1 Score=37.33 Aligned_cols=59 Identities=20% Similarity=0.242 Sum_probs=38.5
Q ss_pred chHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHH
Q 024665 125 RSKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVN 186 (264)
Q Consensus 125 ~s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~ 186 (264)
...|+..++.... .-.+..||+||.|.=.++..|....-+...|.-.|=++.+++...+
T Consensus 14 eeala~~~l~~~n---~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~k 72 (201)
T KOG3201|consen 14 EEALAWTILRDPN---KIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEK 72 (201)
T ss_pred HHHHHHHHHhchh---HHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHH
Confidence 4556666664333 4456789999999766555554443456678888888777655443
No 401
>PRK07814 short chain dehydrogenase; Provisional
Probab=78.09 E-value=41 Score=29.00 Aligned_cols=79 Identities=13% Similarity=0.153 Sum_probs=49.7
Q ss_pred CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhh-cCCCeEEEEcCCCCchhhccc-------CCC
Q 024665 143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAK-KRTNVIPIIEDARHPAKYRML-------VGM 213 (264)
Q Consensus 143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~-~~~nV~~i~~D~~~~~~~~~~-------~~~ 213 (264)
++.+||=.|+ +|.+..++++.+ ....+|+.++.+++..+++.+... ....++++..|+.+....... ...
T Consensus 9 ~~~~vlItGa-sggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 87 (263)
T PRK07814 9 DDQVAVVTGA-GRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAGRRAHVVAADLAHPEATAGLAGQAVEAFGR 87 (263)
T ss_pred CCCEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 4678888886 566666666544 234589999998654444333322 123688899999886532111 146
Q ss_pred ccEEEEcCC
Q 024665 214 VDVIFSDVA 222 (264)
Q Consensus 214 fD~V~~d~p 222 (264)
+|+|+.++.
T Consensus 88 id~vi~~Ag 96 (263)
T PRK07814 88 LDIVVNNVG 96 (263)
T ss_pred CCEEEECCC
Confidence 899998754
No 402
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=78.02 E-value=14 Score=31.75 Aligned_cols=78 Identities=21% Similarity=0.223 Sum_probs=45.7
Q ss_pred CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHh-hcCCCeEEEEcCCCCchhhcc-------cCCC
Q 024665 143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMA-KKRTNVIPIIEDARHPAKYRM-------LVGM 213 (264)
Q Consensus 143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a-~~~~nV~~i~~D~~~~~~~~~-------~~~~ 213 (264)
.+.+||=.|+..| +..++++.+ ....+|+.++.++.. .++.+.. ....++.++..|+.+...... ..+.
T Consensus 7 ~~k~vlVtGas~g-IG~~la~~l~~~G~~v~~~~r~~~~-~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 84 (260)
T PRK12823 7 AGKVVVVTGAAQG-IGRGVALRAAAEGARVVLVDRSELV-HEVAAELRAAGGEALALTADLETYAGAQAAMAAAVEAFGR 84 (260)
T ss_pred CCCEEEEeCCCch-HHHHHHHHHHHCCCEEEEEeCchHH-HHHHHHHHhcCCeEEEEEEeCCCHHHHHHHHHHHHHHcCC
Confidence 3567888886654 444444433 334589999988532 1222222 223368889999988542111 1246
Q ss_pred ccEEEEcCC
Q 024665 214 VDVIFSDVA 222 (264)
Q Consensus 214 fD~V~~d~p 222 (264)
+|+++.+..
T Consensus 85 id~lv~nAg 93 (260)
T PRK12823 85 IDVLINNVG 93 (260)
T ss_pred CeEEEECCc
Confidence 899998773
No 403
>PRK05993 short chain dehydrogenase; Provisional
Probab=78.02 E-value=15 Score=32.18 Aligned_cols=74 Identities=16% Similarity=0.113 Sum_probs=47.0
Q ss_pred CCCEEEEEcccCChHHHHHHHHhC-CCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcc--------cCCC
Q 024665 143 PGARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRM--------LVGM 213 (264)
Q Consensus 143 ~g~~VLDlG~G~G~~s~~la~~~~-~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~--------~~~~ 213 (264)
.+.+||=.|| +|.+..++++.+. ...+|+.++.++..++++.+ ..++++..|+.+...... ..+.
T Consensus 3 ~~k~vlItGa-sggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l~~-----~~~~~~~~Dl~d~~~~~~~~~~~~~~~~g~ 76 (277)
T PRK05993 3 MKRSILITGC-SSGIGAYCARALQSDGWRVFATCRKEEDVAALEA-----EGLEAFQLDYAEPESIAALVAQVLELSGGR 76 (277)
T ss_pred CCCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH-----CCceEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 3457888887 5666666665543 34589999988654333221 257889999988642211 1146
Q ss_pred ccEEEEcCC
Q 024665 214 VDVIFSDVA 222 (264)
Q Consensus 214 fD~V~~d~p 222 (264)
+|+|+.+..
T Consensus 77 id~li~~Ag 85 (277)
T PRK05993 77 LDALFNNGA 85 (277)
T ss_pred ccEEEECCC
Confidence 899998754
No 404
>PRK07478 short chain dehydrogenase; Provisional
Probab=77.95 E-value=16 Score=31.31 Aligned_cols=78 Identities=18% Similarity=0.233 Sum_probs=46.9
Q ss_pred CCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhhc-CCCeEEEEcCCCCchhhcc-------cCCCc
Q 024665 144 GARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKK-RTNVIPIIEDARHPAKYRM-------LVGMV 214 (264)
Q Consensus 144 g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~~-~~nV~~i~~D~~~~~~~~~-------~~~~f 214 (264)
+.+||=.|+..| +...+++.+ ....+|+.++.++...+++.+.... ..++.++..|+.+...... ..+.+
T Consensus 6 ~k~~lItGas~g-iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 84 (254)
T PRK07478 6 GKVAIITGASSG-IGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEGGEAVALAGDVRDEAYAKALVALAVERFGGL 84 (254)
T ss_pred CCEEEEeCCCCh-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHhcCCC
Confidence 567887777654 444444333 2345899999886554444333222 2368889999988653211 12478
Q ss_pred cEEEEcCC
Q 024665 215 DVIFSDVA 222 (264)
Q Consensus 215 D~V~~d~p 222 (264)
|+++.+..
T Consensus 85 d~li~~ag 92 (254)
T PRK07478 85 DIAFNNAG 92 (254)
T ss_pred CEEEECCC
Confidence 99998765
No 405
>PRK07825 short chain dehydrogenase; Provisional
Probab=77.68 E-value=33 Score=29.73 Aligned_cols=75 Identities=16% Similarity=0.160 Sum_probs=45.9
Q ss_pred CCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhc-------ccCCCcc
Q 024665 144 GARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYR-------MLVGMVD 215 (264)
Q Consensus 144 g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~-------~~~~~fD 215 (264)
+.+||=.|+.. .+...+++.+ ....+|+.++.++..++++.+.. .+++++..|+.+..... .....+|
T Consensus 5 ~~~ilVtGasg-giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id 80 (273)
T PRK07825 5 GKVVAITGGAR-GIGLATARALAALGARVAIGDLDEALAKETAAEL---GLVVGGPLDVTDPASFAAFLDAVEADLGPID 80 (273)
T ss_pred CCEEEEeCCCc-hHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh---ccceEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence 45788777754 4555555433 23457888888865433332222 25788999998865321 1124689
Q ss_pred EEEEcCC
Q 024665 216 VIFSDVA 222 (264)
Q Consensus 216 ~V~~d~p 222 (264)
+++.++.
T Consensus 81 ~li~~ag 87 (273)
T PRK07825 81 VLVNNAG 87 (273)
T ss_pred EEEECCC
Confidence 9998764
No 406
>PRK05875 short chain dehydrogenase; Provisional
Probab=77.55 E-value=15 Score=31.99 Aligned_cols=79 Identities=10% Similarity=-0.045 Sum_probs=48.2
Q ss_pred CCCEEEEEcccCChHHHHHHHHhC-CCCEEEEEeCChHHHHHHHHHhhc---CCCeEEEEcCCCCchhhccc-------C
Q 024665 143 PGARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKK---RTNVIPIIEDARHPAKYRML-------V 211 (264)
Q Consensus 143 ~g~~VLDlG~G~G~~s~~la~~~~-~~g~V~avD~s~~~~~~l~~~a~~---~~nV~~i~~D~~~~~~~~~~-------~ 211 (264)
++.+||=.|+. |.+..++++.+- ...+|+.++.+++..+...+.... ..++.++..|+.+....... .
T Consensus 6 ~~k~vlItGas-g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 84 (276)
T PRK05875 6 QDRTYLVTGGG-SGIGKGVAAGLVAAGAAVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTDEDQVARAVDAATAWH 84 (276)
T ss_pred CCCEEEEECCC-cHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 35788888865 445666655443 334899999885443333332211 13788999999886532111 1
Q ss_pred CCccEEEEcCC
Q 024665 212 GMVDVIFSDVA 222 (264)
Q Consensus 212 ~~fD~V~~d~p 222 (264)
..+|+|+.+..
T Consensus 85 ~~~d~li~~ag 95 (276)
T PRK05875 85 GRLHGVVHCAG 95 (276)
T ss_pred CCCCEEEECCC
Confidence 36899998764
No 407
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=77.54 E-value=39 Score=28.91 Aligned_cols=79 Identities=13% Similarity=0.224 Sum_probs=47.9
Q ss_pred CCCEEEEEcccCChHHHHHHH-HhCCCCEEEEEeCChHHHHHHHHHhhc-CCCeEEEEcCCCCchhhcc-------cCCC
Q 024665 143 PGARVLYLGAASGTTVSHVSD-IVGPNGVVYAVEFSHRSGRDLVNMAKK-RTNVIPIIEDARHPAKYRM-------LVGM 213 (264)
Q Consensus 143 ~g~~VLDlG~G~G~~s~~la~-~~~~~g~V~avD~s~~~~~~l~~~a~~-~~nV~~i~~D~~~~~~~~~-------~~~~ 213 (264)
.+.+||=.|+.+|. ..++++ +.....+|+.++.++...+++.+.... ..++.++..|+++...... ....
T Consensus 10 ~~k~vlVtG~s~gI-G~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~~ 88 (255)
T PRK06113 10 DGKCAIITGAGAGI-GKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFALSKLGK 88 (255)
T ss_pred CCCEEEEECCCchH-HHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 36789999966554 444433 333345788888886554443332222 2368889999998653211 1246
Q ss_pred ccEEEEcCC
Q 024665 214 VDVIFSDVA 222 (264)
Q Consensus 214 fD~V~~d~p 222 (264)
+|+|+.+..
T Consensus 89 ~d~li~~ag 97 (255)
T PRK06113 89 VDILVNNAG 97 (255)
T ss_pred CCEEEECCC
Confidence 899998765
No 408
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=77.35 E-value=19 Score=28.46 Aligned_cols=73 Identities=18% Similarity=0.189 Sum_probs=40.6
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCC--CEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEE
Q 024665 142 KPGARVLYLGAASGTTVSHVSDIVGPN--GVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFS 219 (264)
Q Consensus 142 ~~g~~VLDlG~G~G~~s~~la~~~~~~--g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~ 219 (264)
..+.+|+-+|| |..+..++..+... ..|+.+|.+++..+++.+..... .+.. +..+.. ...+.+|+|++
T Consensus 17 ~~~~~i~iiG~--G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~-~~~~---~~~~~~---~~~~~~Dvvi~ 87 (155)
T cd01065 17 LKGKKVLILGA--GGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGEL-GIAI---AYLDLE---ELLAEADLIIN 87 (155)
T ss_pred CCCCEEEEECC--cHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhc-ccce---eecchh---hccccCCEEEe
Confidence 34678999988 46666666544332 47999999865544433322211 0111 122222 12367899988
Q ss_pred cCCC
Q 024665 220 DVAQ 223 (264)
Q Consensus 220 d~p~ 223 (264)
..|.
T Consensus 88 ~~~~ 91 (155)
T cd01065 88 TTPV 91 (155)
T ss_pred CcCC
Confidence 7773
No 409
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=77.09 E-value=2.4 Score=37.85 Aligned_cols=69 Identities=23% Similarity=0.209 Sum_probs=45.3
Q ss_pred ccCChHHHHHHHHhCCCC---EEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEcCC
Q 024665 152 AASGTTVSHVSDIVGPNG---VVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVA 222 (264)
Q Consensus 152 ~G~G~~s~~la~~~~~~g---~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p 222 (264)
-|+|.+..++.+.+-..+ .|.++|+++.. ............+++++|+++..........+|+||.-.+
T Consensus 4 GgsGflG~~iv~~Ll~~g~~~~Vr~~d~~~~~--~~~~~~~~~~~~~~~~~Di~d~~~l~~a~~g~d~V~H~Aa 75 (280)
T PF01073_consen 4 GGSGFLGSHIVRQLLERGYIYEVRVLDRSPPP--KFLKDLQKSGVKEYIQGDITDPESLEEALEGVDVVFHTAA 75 (280)
T ss_pred cCCcHHHHHHHHHHHHCCCceEEEEccccccc--ccchhhhcccceeEEEeccccHHHHHHHhcCCceEEEeCc
Confidence 378999998887765555 68888887543 1111111222344999999997655445568899997644
No 410
>PRK06841 short chain dehydrogenase; Provisional
Probab=77.04 E-value=33 Score=29.17 Aligned_cols=77 Identities=14% Similarity=0.225 Sum_probs=45.9
Q ss_pred CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhccc-------CCCc
Q 024665 143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRML-------VGMV 214 (264)
Q Consensus 143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~-------~~~f 214 (264)
.+.+||=.|+..+. ..++++.+ ....+|+.++.++...+...+. ...++.++..|+.+....... ...+
T Consensus 14 ~~k~vlItGas~~I-G~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~ 90 (255)
T PRK06841 14 SGKVAVVTGGASGI-GHAIAELFAAKGARVALLDRSEDVAEVAAQL--LGGNAKGLVCDVSDSQSVEAAVAAVISAFGRI 90 (255)
T ss_pred CCCEEEEECCCChH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHh--hCCceEEEEecCCCHHHHHHHHHHHHHHhCCC
Confidence 45688888876544 44444333 2345799999886532211111 123677899999886532111 1368
Q ss_pred cEEEEcCC
Q 024665 215 DVIFSDVA 222 (264)
Q Consensus 215 D~V~~d~p 222 (264)
|+|+.++.
T Consensus 91 d~vi~~ag 98 (255)
T PRK06841 91 DILVNSAG 98 (255)
T ss_pred CEEEECCC
Confidence 99998775
No 411
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=76.79 E-value=8.3 Score=36.10 Aligned_cols=81 Identities=22% Similarity=0.142 Sum_probs=50.6
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhC-CCCEEEEEeCChHHHHH---HHHHhhcCCCeEEEEcCCCCchhhcccCC----
Q 024665 141 IKPGARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRD---LVNMAKKRTNVIPIIEDARHPAKYRMLVG---- 212 (264)
Q Consensus 141 l~~g~~VLDlG~G~G~~s~~la~~~~-~~g~V~avD~s~~~~~~---l~~~a~~~~nV~~i~~D~~~~~~~~~~~~---- 212 (264)
...+.+||=.| |+|.+..++++.+- ..-+|++++.++.-.+. ..+......++++++.|+++.........
T Consensus 57 ~~~~~kVLVtG-atG~IG~~l~~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~ 135 (390)
T PLN02657 57 EPKDVTVLVVG-ATGYIGKFVVRELVRRGYNVVAVAREKSGIRGKNGKEDTKKELPGAEVVFGDVTDADSLRKVLFSEGD 135 (390)
T ss_pred CCCCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEEechhhccccchhhHHhhhcCCceEEEeeCCCHHHHHHHHHHhCC
Confidence 34567888777 68998888876553 33489999887432110 01111123478999999998754322222
Q ss_pred CccEEEEcCC
Q 024665 213 MVDVIFSDVA 222 (264)
Q Consensus 213 ~fD~V~~d~p 222 (264)
.+|+|+....
T Consensus 136 ~~D~Vi~~aa 145 (390)
T PLN02657 136 PVDVVVSCLA 145 (390)
T ss_pred CCcEEEECCc
Confidence 5899997654
No 412
>PRK06114 short chain dehydrogenase; Provisional
Probab=76.75 E-value=32 Score=29.48 Aligned_cols=79 Identities=14% Similarity=0.145 Sum_probs=46.9
Q ss_pred CCCEEEEEcccCChHHHHHHHHhC-CCCEEEEEeCCh-HHHHHHHHHhh-cCCCeEEEEcCCCCchhhc-------ccCC
Q 024665 143 PGARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSH-RSGRDLVNMAK-KRTNVIPIIEDARHPAKYR-------MLVG 212 (264)
Q Consensus 143 ~g~~VLDlG~G~G~~s~~la~~~~-~~g~V~avD~s~-~~~~~l~~~a~-~~~nV~~i~~D~~~~~~~~-------~~~~ 212 (264)
.+.++|=.|+.. .+...+++.+- ...+|+.++.++ ..++++.+... ...++.++..|+.+..... ...+
T Consensus 7 ~~k~~lVtG~s~-gIG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~g 85 (254)
T PRK06114 7 DGQVAFVTGAGS-GIGQRIAIGLAQAGADVALFDLRTDDGLAETAEHIEAAGRRAIQIAADVTSKADLRAAVARTEAELG 85 (254)
T ss_pred CCCEEEEECCCc-hHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 456788777554 56666655443 345899998763 22233333222 2346888999998764221 1124
Q ss_pred CccEEEEcCC
Q 024665 213 MVDVIFSDVA 222 (264)
Q Consensus 213 ~fD~V~~d~p 222 (264)
.+|+|+.+..
T Consensus 86 ~id~li~~ag 95 (254)
T PRK06114 86 ALTLAVNAAG 95 (254)
T ss_pred CCCEEEECCC
Confidence 6799998765
No 413
>PLN00198 anthocyanidin reductase; Provisional
Probab=76.74 E-value=12 Score=33.80 Aligned_cols=79 Identities=9% Similarity=0.122 Sum_probs=47.6
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCC-CEEEEEeCChHHHHHHHHHh--hcCCCeEEEEcCCCCchhhcccCCCccEEEE
Q 024665 143 PGARVLYLGAASGTTVSHVSDIVGPN-GVVYAVEFSHRSGRDLVNMA--KKRTNVIPIIEDARHPAKYRMLVGMVDVIFS 219 (264)
Q Consensus 143 ~g~~VLDlG~G~G~~s~~la~~~~~~-g~V~avD~s~~~~~~l~~~a--~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~ 219 (264)
.+.+||=.|+ +|.+..++++.+-.. .+|+++..+........... ....+++++..|+++..........+|+|+.
T Consensus 8 ~~~~vlItG~-~GfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih 86 (338)
T PLN00198 8 GKKTACVIGG-TGFLASLLIKLLLQKGYAVNTTVRDPENQKKIAHLRALQELGDLKIFGADLTDEESFEAPIAGCDLVFH 86 (338)
T ss_pred CCCeEEEECC-chHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHhcCCCCceEEEEcCCCChHHHHHHHhcCCEEEE
Confidence 4567776654 588999888766433 37877776632211111111 1113689999999986543333456899986
Q ss_pred cCC
Q 024665 220 DVA 222 (264)
Q Consensus 220 d~p 222 (264)
.+.
T Consensus 87 ~A~ 89 (338)
T PLN00198 87 VAT 89 (338)
T ss_pred eCC
Confidence 654
No 414
>PRK09186 flagellin modification protein A; Provisional
Probab=76.69 E-value=46 Score=28.26 Aligned_cols=79 Identities=18% Similarity=0.224 Sum_probs=47.5
Q ss_pred CCCEEEEEcccCChHHHHHHHHhC-CCCEEEEEeCChHHHHHHHHHhhc---CCCeEEEEcCCCCchhhccc-------C
Q 024665 143 PGARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKK---RTNVIPIIEDARHPAKYRML-------V 211 (264)
Q Consensus 143 ~g~~VLDlG~G~G~~s~~la~~~~-~~g~V~avD~s~~~~~~l~~~a~~---~~nV~~i~~D~~~~~~~~~~-------~ 211 (264)
.+.+||=.|+. |.+..+++..+- ...+|+.++.+++.++++.+.... ...+.+++.|+.+....... .
T Consensus 3 ~~k~vlItGas-~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~ 81 (256)
T PRK09186 3 KGKTILITGAG-GLIGSALVKAILEAGGIVIAADIDKEALNELLESLGKEFKSKKLSLVELDITDQESLEEFLSKSAEKY 81 (256)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCCHHHHHHHHHHHHHHc
Confidence 35678878875 456666665543 335799998886554443332211 22567789999886532111 1
Q ss_pred CCccEEEEcCC
Q 024665 212 GMVDVIFSDVA 222 (264)
Q Consensus 212 ~~fD~V~~d~p 222 (264)
..+|+|+.+..
T Consensus 82 ~~id~vi~~A~ 92 (256)
T PRK09186 82 GKIDGAVNCAY 92 (256)
T ss_pred CCccEEEECCc
Confidence 34899998763
No 415
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=76.17 E-value=14 Score=33.14 Aligned_cols=79 Identities=11% Similarity=0.003 Sum_probs=47.6
Q ss_pred CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhh-cCCCeEEEEcCCCCchhhccc-------CCC
Q 024665 143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAK-KRTNVIPIIEDARHPAKYRML-------VGM 213 (264)
Q Consensus 143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~-~~~nV~~i~~D~~~~~~~~~~-------~~~ 213 (264)
++.+||=.|+. +.+..+++..+ ....+|+.++.+....+++.+... ...++.++..|+.+....... ...
T Consensus 5 ~~k~vlVTGas-~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~~ 83 (322)
T PRK07453 5 AKGTVIITGAS-SGVGLYAAKALAKRGWHVIMACRNLKKAEAAAQELGIPPDSYTIIHIDLGDLDSVRRFVDDFRALGKP 83 (322)
T ss_pred CCCEEEEEcCC-ChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhccCCceEEEEecCCCHHHHHHHHHHHHHhCCC
Confidence 35678877765 45555555443 234589999988554434333322 123688999999886532111 135
Q ss_pred ccEEEEcCC
Q 024665 214 VDVIFSDVA 222 (264)
Q Consensus 214 fD~V~~d~p 222 (264)
+|+|+.++.
T Consensus 84 iD~li~nAg 92 (322)
T PRK07453 84 LDALVCNAA 92 (322)
T ss_pred ccEEEECCc
Confidence 899998865
No 416
>PRK07074 short chain dehydrogenase; Provisional
Probab=75.73 E-value=40 Score=28.80 Aligned_cols=76 Identities=18% Similarity=0.231 Sum_probs=46.1
Q ss_pred CEEEEEcccCChHHHHHHHHhC-CCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhccc-------CCCccE
Q 024665 145 ARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRML-------VGMVDV 216 (264)
Q Consensus 145 ~~VLDlG~G~G~~s~~la~~~~-~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~-------~~~fD~ 216 (264)
.++|=.|+.++ +...++..+. ...+|+.++.++...+++.+.. ...+++++..|+.+....... ...+|+
T Consensus 3 k~ilItGat~~-iG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~ 80 (257)
T PRK07074 3 RTALVTGAAGG-IGQALARRFLAAGDRVLALDIDAAALAAFADAL-GDARFVPVACDLTDAASLAAALANAAAERGPVDV 80 (257)
T ss_pred CEEEEECCcch-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-cCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence 45676776554 5555554442 3358999998865443333322 223688999999886532111 135899
Q ss_pred EEEcCC
Q 024665 217 IFSDVA 222 (264)
Q Consensus 217 V~~d~p 222 (264)
|+.+..
T Consensus 81 vi~~ag 86 (257)
T PRK07074 81 LVANAG 86 (257)
T ss_pred EEECCC
Confidence 998765
No 417
>PRK05717 oxidoreductase; Validated
Probab=75.72 E-value=28 Score=29.77 Aligned_cols=77 Identities=18% Similarity=0.147 Sum_probs=47.5
Q ss_pred CCCEEEEEcccCChHHHHHHHHhC-CCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhc-------ccCCCc
Q 024665 143 PGARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYR-------MLVGMV 214 (264)
Q Consensus 143 ~g~~VLDlG~G~G~~s~~la~~~~-~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~-------~~~~~f 214 (264)
.+.+||=.|+. |.+..++++.+- ...+|+.++.++....++.+. ...++.++..|+++..... ...+.+
T Consensus 9 ~~k~vlItG~s-g~IG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~i 85 (255)
T PRK05717 9 NGRVALVTGAA-RGIGLGIAAWLIAEGWQVVLADLDRERGSKVAKA--LGENAWFIAMDVADEAQVAAGVAEVLGQFGRL 85 (255)
T ss_pred CCCEEEEeCCc-chHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHH--cCCceEEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence 35678877765 555666655543 345899999885433232221 2246889999999864221 112368
Q ss_pred cEEEEcCC
Q 024665 215 DVIFSDVA 222 (264)
Q Consensus 215 D~V~~d~p 222 (264)
|+|+.+..
T Consensus 86 d~li~~ag 93 (255)
T PRK05717 86 DALVCNAA 93 (255)
T ss_pred CEEEECCC
Confidence 99998765
No 418
>PRK07035 short chain dehydrogenase; Provisional
Probab=75.61 E-value=19 Score=30.68 Aligned_cols=79 Identities=11% Similarity=0.093 Sum_probs=47.2
Q ss_pred CCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhh-cCCCeEEEEcCCCCchhhcc-------cCCCcc
Q 024665 144 GARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAK-KRTNVIPIIEDARHPAKYRM-------LVGMVD 215 (264)
Q Consensus 144 g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~-~~~nV~~i~~D~~~~~~~~~-------~~~~fD 215 (264)
+.+||=.|+++|.=......+.....+|+.++.++...+++.+... ...++++++.|+.+...... ..+++|
T Consensus 8 ~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id 87 (252)
T PRK07035 8 GKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAAGGKAEALACHIGEMEQIDALFAHIRERHGRLD 87 (252)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCC
Confidence 4678888877665333333333334589999998654444333322 23367888999987643211 124689
Q ss_pred EEEEcCC
Q 024665 216 VIFSDVA 222 (264)
Q Consensus 216 ~V~~d~p 222 (264)
+|+.+..
T Consensus 88 ~li~~ag 94 (252)
T PRK07035 88 ILVNNAA 94 (252)
T ss_pred EEEECCC
Confidence 9997664
No 419
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=75.23 E-value=39 Score=28.89 Aligned_cols=77 Identities=10% Similarity=0.098 Sum_probs=46.9
Q ss_pred CEEEEEcccCChHHHHHHHHhC-CCCEEEEEeCChHHHHHHHHHhhc-C--CCeEEEEcCCCCchhhcc-------cCCC
Q 024665 145 ARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKK-R--TNVIPIIEDARHPAKYRM-------LVGM 213 (264)
Q Consensus 145 ~~VLDlG~G~G~~s~~la~~~~-~~g~V~avD~s~~~~~~l~~~a~~-~--~nV~~i~~D~~~~~~~~~-------~~~~ 213 (264)
.+||=.|+ ++.+..+++..+- ....|+.+|.++...+++.+.... . .+++++..|+++...... ....
T Consensus 3 k~ilItG~-~~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~~ 81 (259)
T PRK12384 3 QVAVVIGG-GQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEIFGR 81 (259)
T ss_pred CEEEEECC-CcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 46787885 4566665555442 345899999886544343332211 1 368999999987542110 1146
Q ss_pred ccEEEEcCC
Q 024665 214 VDVIFSDVA 222 (264)
Q Consensus 214 fD~V~~d~p 222 (264)
+|+|+.++.
T Consensus 82 id~vv~~ag 90 (259)
T PRK12384 82 VDLLVYNAG 90 (259)
T ss_pred CCEEEECCC
Confidence 899998765
No 420
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=74.70 E-value=43 Score=28.57 Aligned_cols=79 Identities=11% Similarity=0.140 Sum_probs=47.8
Q ss_pred CCCEEEEEcccCChHHHHHHHHhC-CCCEEEEEeCChHHHHHHHHHhhc-CCCeEEEEcCCCCchhhcc-------cCCC
Q 024665 143 PGARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKK-RTNVIPIIEDARHPAKYRM-------LVGM 213 (264)
Q Consensus 143 ~g~~VLDlG~G~G~~s~~la~~~~-~~g~V~avD~s~~~~~~l~~~a~~-~~nV~~i~~D~~~~~~~~~-------~~~~ 213 (264)
.+.++|=.|+.+ .+...++..+- ...+|+.++.++...+++.+.... ..++.++..|+.+...... ....
T Consensus 8 ~~k~~lItGas~-giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 86 (254)
T PRK08085 8 AGKNILITGSAQ-GIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQEGIKAHAAPFNVTHKQEVEAAIEHIEKDIGP 86 (254)
T ss_pred CCCEEEEECCCC-hHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHhcCC
Confidence 356788788655 55555544432 345899999886544444333222 2367888999988653211 1246
Q ss_pred ccEEEEcCC
Q 024665 214 VDVIFSDVA 222 (264)
Q Consensus 214 fD~V~~d~p 222 (264)
+|+|+.+..
T Consensus 87 id~vi~~ag 95 (254)
T PRK08085 87 IDVLINNAG 95 (254)
T ss_pred CCEEEECCC
Confidence 899998775
No 421
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=74.67 E-value=50 Score=27.70 Aligned_cols=77 Identities=16% Similarity=0.328 Sum_probs=47.4
Q ss_pred CEEEEEcccCChHHHHHHHHhC-CCCEEEEE-eCChHHHHHHHHHhh-cCCCeEEEEcCCCCchhhccc-------CCCc
Q 024665 145 ARVLYLGAASGTTVSHVSDIVG-PNGVVYAV-EFSHRSGRDLVNMAK-KRTNVIPIIEDARHPAKYRML-------VGMV 214 (264)
Q Consensus 145 ~~VLDlG~G~G~~s~~la~~~~-~~g~V~av-D~s~~~~~~l~~~a~-~~~nV~~i~~D~~~~~~~~~~-------~~~f 214 (264)
.+||=.|+ +|.+...++..+- ...+|+.+ +.++...+++.+... ...++.++..|+.+....... ...+
T Consensus 6 ~~ilI~Ga-sg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 84 (247)
T PRK05565 6 KVAIVTGA-SGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKEEGGDAIAVKADVSSEEDVENLVEQIVEKFGKI 84 (247)
T ss_pred CEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCCC
Confidence 46777775 6777777765542 33478887 887544333333322 234689999999886532111 1368
Q ss_pred cEEEEcCC
Q 024665 215 DVIFSDVA 222 (264)
Q Consensus 215 D~V~~d~p 222 (264)
|+|+.++.
T Consensus 85 d~vi~~ag 92 (247)
T PRK05565 85 DILVNNAG 92 (247)
T ss_pred CEEEECCC
Confidence 99998765
No 422
>PRK12828 short chain dehydrogenase; Provisional
Probab=74.65 E-value=49 Score=27.56 Aligned_cols=78 Identities=13% Similarity=0.016 Sum_probs=46.2
Q ss_pred CCCEEEEEcccCChHHHHHHHHhC-CCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcc-------cCCCc
Q 024665 143 PGARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRM-------LVGMV 214 (264)
Q Consensus 143 ~g~~VLDlG~G~G~~s~~la~~~~-~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~-------~~~~f 214 (264)
++.+||=.|+. |.+...+++.+- ...+|++++.++.-..+..+... ..+++++..|+.+...... ....+
T Consensus 6 ~~k~vlItGat-g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~ 83 (239)
T PRK12828 6 QGKVVAITGGF-GGLGRATAAWLAARGARVALIGRGAAPLSQTLPGVP-ADALRIGGIDLVDPQAARRAVDEVNRQFGRL 83 (239)
T ss_pred CCCEEEEECCC-CcHhHHHHHHHHHCCCeEEEEeCChHhHHHHHHHHh-hcCceEEEeecCCHHHHHHHHHHHHHHhCCc
Confidence 35677777754 666666665542 34579999987543223222211 2357788899887542211 12368
Q ss_pred cEEEEcCC
Q 024665 215 DVIFSDVA 222 (264)
Q Consensus 215 D~V~~d~p 222 (264)
|+|+.+..
T Consensus 84 d~vi~~ag 91 (239)
T PRK12828 84 DALVNIAG 91 (239)
T ss_pred CEEEECCc
Confidence 99988755
No 423
>PRK11524 putative methyltransferase; Provisional
Probab=74.57 E-value=1.3 Score=39.68 Aligned_cols=30 Identities=30% Similarity=0.227 Sum_probs=23.1
Q ss_pred CeEEEEcCCCCchhhcccCCCccEEEEcCCC
Q 024665 193 NVIPIIEDARHPAKYRMLVGMVDVIFSDVAQ 223 (264)
Q Consensus 193 nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p~ 223 (264)
+..++++|+.+..+. +..++||+|++|||.
T Consensus 8 ~~~i~~gD~~~~l~~-l~~~siDlIitDPPY 37 (284)
T PRK11524 8 AKTIIHGDALTELKK-IPSESVDLIFADPPY 37 (284)
T ss_pred CCEEEeccHHHHHHh-cccCcccEEEECCCc
Confidence 567899999886432 345689999999994
No 424
>PRK08278 short chain dehydrogenase; Provisional
Probab=74.56 E-value=45 Score=29.03 Aligned_cols=79 Identities=10% Similarity=0.148 Sum_probs=46.2
Q ss_pred CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHH-------HHHHHHHh-hcCCCeEEEEcCCCCchhhccc---
Q 024665 143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRS-------GRDLVNMA-KKRTNVIPIIEDARHPAKYRML--- 210 (264)
Q Consensus 143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~-------~~~l~~~a-~~~~nV~~i~~D~~~~~~~~~~--- 210 (264)
.+.+||=.||. +.+...+++.+ ....+|+.++.++.. +++..+.. ....++.++..|+++.......
T Consensus 5 ~~k~vlItGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~ 83 (273)
T PRK08278 5 SGKTLFITGAS-RGIGLAIALRAARDGANIVIAAKTAEPHPKLPGTIHTAAEEIEAAGGQALPLVGDVRDEDQVAAAVAK 83 (273)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEecccccccchhhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHH
Confidence 34678877775 45555555544 234589999876421 11222211 1223788999999887532111
Q ss_pred ----CCCccEEEEcCC
Q 024665 211 ----VGMVDVIFSDVA 222 (264)
Q Consensus 211 ----~~~fD~V~~d~p 222 (264)
.+.+|+|+.+..
T Consensus 84 ~~~~~g~id~li~~ag 99 (273)
T PRK08278 84 AVERFGGIDICVNNAS 99 (273)
T ss_pred HHHHhCCCCEEEECCC
Confidence 136899998765
No 425
>KOG3350 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.42 E-value=10 Score=31.92 Aligned_cols=83 Identities=25% Similarity=0.294 Sum_probs=51.0
Q ss_pred hHHHHHHHhcccccCCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCch
Q 024665 126 SKLAAAVLGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPA 205 (264)
Q Consensus 126 s~l~~~il~~l~~~~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~ 205 (264)
.+++++++.. ...+.+|--+-|=|=++-.-.-+.--|.-+||-.|++.+. ++ - --+|+.-|..++.
T Consensus 61 ~~La~e~v~~-----s~e~~rIacvS~Psly~y~k~re~~~~~~~v~lfEfDkRF--e~---y----g~eFvfYDyN~p~ 126 (217)
T KOG3350|consen 61 RKLAAERVEA-----SGEGSRIACVSCPSLYVYQKKREIEIPHDQVYLFEFDKRF--EL---Y----GTEFVFYDYNCPL 126 (217)
T ss_pred HHHHHHHHhh-----cccCceEEEEeCchHHhhhhhhhccCCceeEEEEEehhhH--Hh---c----cceeEEeccCCCC
Confidence 4566666533 2355667666665544333333332356689999999876 11 1 1468888887654
Q ss_pred hhc-ccCCCccEEEEcCC
Q 024665 206 KYR-MLVGMVDVIFSDVA 222 (264)
Q Consensus 206 ~~~-~~~~~fD~V~~d~p 222 (264)
..+ .+..+||+|++|||
T Consensus 127 dlp~~lk~~fdiivaDPP 144 (217)
T KOG3350|consen 127 DLPDELKAHFDIIVADPP 144 (217)
T ss_pred CCHHHHHhcccEEEeCCc
Confidence 321 24568999999999
No 426
>PRK06198 short chain dehydrogenase; Provisional
Probab=74.36 E-value=47 Score=28.33 Aligned_cols=79 Identities=10% Similarity=0.133 Sum_probs=47.3
Q ss_pred CCCEEEEEcccCChHHHHHHHHhC-CCCE-EEEEeCChHHHHHHHHHhh-cCCCeEEEEcCCCCchhhccc-------CC
Q 024665 143 PGARVLYLGAASGTTVSHVSDIVG-PNGV-VYAVEFSHRSGRDLVNMAK-KRTNVIPIIEDARHPAKYRML-------VG 212 (264)
Q Consensus 143 ~g~~VLDlG~G~G~~s~~la~~~~-~~g~-V~avD~s~~~~~~l~~~a~-~~~nV~~i~~D~~~~~~~~~~-------~~ 212 (264)
.+.+||=.|+. |.+...+++.+- ...+ |+.++.++....+...... ...++.++..|+.+....... .+
T Consensus 5 ~~k~vlItGa~-g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g 83 (260)
T PRK06198 5 DGKVALVTGGT-QGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEALGAKAVFVQADLSDVEDCRRVVAAADEAFG 83 (260)
T ss_pred CCcEEEEeCCC-chHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 45678888864 556666665543 2335 9999988543333332222 223688889999876422111 13
Q ss_pred CccEEEEcCC
Q 024665 213 MVDVIFSDVA 222 (264)
Q Consensus 213 ~fD~V~~d~p 222 (264)
.+|.|+.++.
T Consensus 84 ~id~li~~ag 93 (260)
T PRK06198 84 RLDALVNAAG 93 (260)
T ss_pred CCCEEEECCC
Confidence 6899998765
No 427
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=74.29 E-value=6.1 Score=36.10 Aligned_cols=78 Identities=18% Similarity=0.095 Sum_probs=48.2
Q ss_pred CCEEEEEcccCChHHHHHHHHhCCC-CEEEEEeCChHH----HHHHHHHhh--cCCCeEEEEcCCCCchhhcccCCCccE
Q 024665 144 GARVLYLGAASGTTVSHVSDIVGPN-GVVYAVEFSHRS----GRDLVNMAK--KRTNVIPIIEDARHPAKYRMLVGMVDV 216 (264)
Q Consensus 144 g~~VLDlG~G~G~~s~~la~~~~~~-g~V~avD~s~~~----~~~l~~~a~--~~~nV~~i~~D~~~~~~~~~~~~~fD~ 216 (264)
.++||=.| |+|.+..+|+..+-.. -+|+++|..... ...+..... ...+++++.+|+++..........+|+
T Consensus 15 ~~~vlVtG-atGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~~~~~~d~ 93 (348)
T PRK15181 15 PKRWLITG-VAGFIGSGLLEELLFLNQTVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRKFTDCQKACKNVDY 93 (348)
T ss_pred CCEEEEEC-CccHHHHHHHHHHHHCCCEEEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhhCCCE
Confidence 35777655 6899999888776433 379999975321 111111100 113688999999986543333457899
Q ss_pred EEEcCC
Q 024665 217 IFSDVA 222 (264)
Q Consensus 217 V~~d~p 222 (264)
||.-..
T Consensus 94 ViHlAa 99 (348)
T PRK15181 94 VLHQAA 99 (348)
T ss_pred EEECcc
Confidence 986554
No 428
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=74.06 E-value=32 Score=30.18 Aligned_cols=74 Identities=20% Similarity=0.259 Sum_probs=51.5
Q ss_pred CCEEEEEcccCChHHHHHHHHhCCC-CEEEEEeCC-hHHHHHHHHHhhcCCCeEEEEcCCCCchhh--------cccCCC
Q 024665 144 GARVLYLGAASGTTVSHVSDIVGPN-GVVYAVEFS-HRSGRDLVNMAKKRTNVIPIIEDARHPAKY--------RMLVGM 213 (264)
Q Consensus 144 g~~VLDlG~G~G~~s~~la~~~~~~-g~V~avD~s-~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~--------~~~~~~ 213 (264)
-.+||-.||.+|.+...+|..+-.+ .+|||.-.+ +.|. ++.... .+.+...|+.+++.. ....++
T Consensus 7 ~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~-~L~~~~----gl~~~kLDV~~~~~V~~v~~evr~~~~Gk 81 (289)
T KOG1209|consen 7 PKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMA-QLAIQF----GLKPYKLDVSKPEEVVTVSGEVRANPDGK 81 (289)
T ss_pred CCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHh-hHHHhh----CCeeEEeccCChHHHHHHHHHHhhCCCCc
Confidence 4589999999999999999876544 579999877 4442 222222 477888888776421 123468
Q ss_pred ccEEEEcCC
Q 024665 214 VDVIFSDVA 222 (264)
Q Consensus 214 fD~V~~d~p 222 (264)
.|+.+-|.-
T Consensus 82 ld~L~NNAG 90 (289)
T KOG1209|consen 82 LDLLYNNAG 90 (289)
T ss_pred eEEEEcCCC
Confidence 899887755
No 429
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=73.82 E-value=20 Score=35.92 Aligned_cols=85 Identities=14% Similarity=0.027 Sum_probs=51.0
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHH-----HHHHHHHhhc-CCCeEEEEcCCCCchhhcccCCCc
Q 024665 141 IKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRS-----GRDLVNMAKK-RTNVIPIIEDARHPAKYRMLVGMV 214 (264)
Q Consensus 141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~-----~~~l~~~a~~-~~nV~~i~~D~~~~~~~~~~~~~f 214 (264)
.....+|+=+|.|.-..++..+-.-..-..+.+||.+... +.++++.|+. .++|.+...+.............+
T Consensus 126 ~qR~akVlVlG~Gg~~s~lv~sL~~sG~~~I~~vd~D~v~SNlnRIgEl~e~A~~~n~~v~v~~i~~~~~~dl~ev~~~~ 205 (637)
T TIGR03693 126 LSRNAKILAAGSGDFLTKLVRSLIDSGFPRFHAIVTDAEEHALDRIHELAEIAEETDDALLVQEIDFAEDQHLHEAFEPA 205 (637)
T ss_pred hhhcccEEEEecCchHHHHHHHHHhcCCCcEEEEeccccchhhhHHHHHHHHHHHhCCCCceEeccCCcchhHHHhhcCC
Confidence 4577899999999855444443332234578899877311 2355677766 456655555543333333345789
Q ss_pred cEEEEcCCCch
Q 024665 215 DVIFSDVAQPD 225 (264)
Q Consensus 215 D~V~~d~p~~~ 225 (264)
|+|++-.-.|+
T Consensus 206 DiVi~vsDdy~ 216 (637)
T TIGR03693 206 DWVLYVSDNGD 216 (637)
T ss_pred cEEEEECCCCC
Confidence 99997544433
No 430
>PRK05855 short chain dehydrogenase; Validated
Probab=73.79 E-value=25 Score=33.95 Aligned_cols=78 Identities=12% Similarity=0.137 Sum_probs=49.0
Q ss_pred CCEEEEEcccCChHHHHHHHHhC-CCCEEEEEeCChHHHHHHHHHhhc-CCCeEEEEcCCCCchhhcc-------cCCCc
Q 024665 144 GARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKK-RTNVIPIIEDARHPAKYRM-------LVGMV 214 (264)
Q Consensus 144 g~~VLDlG~G~G~~s~~la~~~~-~~g~V~avD~s~~~~~~l~~~a~~-~~nV~~i~~D~~~~~~~~~-------~~~~f 214 (264)
+.++|=.|+ +|.+..++++.+. ...+|+.++.+....+++.+.... ..++.++..|+++...... ..+.+
T Consensus 315 ~~~~lv~G~-s~giG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~i 393 (582)
T PRK05855 315 GKLVVVTGA-GSGIGRETALAFAREGAEVVASDIDEAAAERTAELIRAAGAVAHAYRVDVSDADAMEAFAEWVRAEHGVP 393 (582)
T ss_pred CCEEEEECC-cCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHhcCCC
Confidence 467787776 5555555554442 345799999986554444433322 2378999999998653211 12468
Q ss_pred cEEEEcCC
Q 024665 215 DVIFSDVA 222 (264)
Q Consensus 215 D~V~~d~p 222 (264)
|+|+.+..
T Consensus 394 d~lv~~Ag 401 (582)
T PRK05855 394 DIVVNNAG 401 (582)
T ss_pred cEEEECCc
Confidence 99998865
No 431
>PRK07831 short chain dehydrogenase; Provisional
Probab=73.73 E-value=57 Score=27.96 Aligned_cols=81 Identities=19% Similarity=0.201 Sum_probs=47.6
Q ss_pred CCCCCEEEEEccc-CChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhhc---CCCeEEEEcCCCCchhhcc------
Q 024665 141 IKPGARVLYLGAA-SGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKK---RTNVIPIIEDARHPAKYRM------ 209 (264)
Q Consensus 141 l~~g~~VLDlG~G-~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~~---~~nV~~i~~D~~~~~~~~~------ 209 (264)
+.++.+||=.|+. +| +...+++.+ .....|+.+|.++...++..+.... ..++.++..|+.+......
T Consensus 14 ~~~~k~vlItG~sg~g-IG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 92 (262)
T PRK07831 14 LLAGKVVLVTAAAGTG-IGSATARRALEEGARVVISDIHERRLGETADELAAELGLGRVEAVVCDVTSEAQVDALIDAAV 92 (262)
T ss_pred ccCCCEEEEECCCccc-HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCCHHHHHHHHHHHH
Confidence 3456788888864 33 344443332 2235799999886444333332221 1368899999988643211
Q ss_pred -cCCCccEEEEcCC
Q 024665 210 -LVGMVDVIFSDVA 222 (264)
Q Consensus 210 -~~~~fD~V~~d~p 222 (264)
..+.+|+|+.+..
T Consensus 93 ~~~g~id~li~~ag 106 (262)
T PRK07831 93 ERLGRLDVLVNNAG 106 (262)
T ss_pred HHcCCCCEEEECCC
Confidence 1146899998875
No 432
>PRK08219 short chain dehydrogenase; Provisional
Probab=73.67 E-value=30 Score=28.73 Aligned_cols=74 Identities=18% Similarity=0.215 Sum_probs=45.8
Q ss_pred CEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccC---CCccEEEEcC
Q 024665 145 ARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLV---GMVDVIFSDV 221 (264)
Q Consensus 145 ~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~---~~fD~V~~d~ 221 (264)
.+||=.|+ +|.+..++++.+-...+|++++.++....++.+ ....+++++.|+.+........ ...|.|+..+
T Consensus 4 ~~vlVtG~-~g~iG~~l~~~l~~~~~V~~~~r~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi~~a 79 (227)
T PRK08219 4 PTALITGA-SRGIGAAIARELAPTHTLLLGGRPAERLDELAA---ELPGATPFPVDLTDPEAIAAAVEQLGRLDVLVHNA 79 (227)
T ss_pred CEEEEecC-CcHHHHHHHHHHHhhCCEEEEeCCHHHHHHHHH---HhccceEEecCCCCHHHHHHHHHhcCCCCEEEECC
Confidence 36777776 466666665544323689999988543333322 1236889999999865332111 2689999765
Q ss_pred C
Q 024665 222 A 222 (264)
Q Consensus 222 p 222 (264)
.
T Consensus 80 g 80 (227)
T PRK08219 80 G 80 (227)
T ss_pred C
Confidence 5
No 433
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=73.17 E-value=3.2 Score=36.07 Aligned_cols=48 Identities=15% Similarity=0.061 Sum_probs=30.9
Q ss_pred hHHHHHHHhcccccCCC-CCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHH
Q 024665 126 SKLAAAVLGGVDNIWIK-PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRS 180 (264)
Q Consensus 126 s~l~~~il~~l~~~~l~-~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~ 180 (264)
++++..|+..+. + +..+++|+.||+|.++..+... ..+|+..|+++.+
T Consensus 6 ~~l~~~I~~~ip----~~~~~~~vepF~G~g~V~~~~~~~---~~~vi~ND~~~~l 54 (260)
T PF02086_consen 6 RKLAKWIIELIP----KNKHKTYVEPFAGGGSVFLNLKQP---GKRVIINDINPDL 54 (260)
T ss_dssp GGGHHHHHHHS-----S-S-SEEEETT-TTSHHHHCC------SSEEEEEES-HHH
T ss_pred HHHHHHHHHHcC----CCCCCEEEEEecchhHHHHHhccc---ccceeeeechHHH
Confidence 345555554433 2 7889999999999999999763 4589999999633
No 434
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=73.07 E-value=47 Score=31.49 Aligned_cols=77 Identities=18% Similarity=0.113 Sum_probs=48.3
Q ss_pred CCCEEEEEcccCChHHHHHHHHhC-CCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEcC
Q 024665 143 PGARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDV 221 (264)
Q Consensus 143 ~g~~VLDlG~G~G~~s~~la~~~~-~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~ 221 (264)
.+.+||=.| ++|.+...++..+. ...+|++++.+++..++.. .....++..+..|+.+........+.+|+++.+.
T Consensus 177 ~gK~VLITG-ASgGIG~aLA~~La~~G~~Vi~l~r~~~~l~~~~--~~~~~~v~~v~~Dvsd~~~v~~~l~~IDiLInnA 253 (406)
T PRK07424 177 KGKTVAVTG-ASGTLGQALLKELHQQGAKVVALTSNSDKITLEI--NGEDLPVKTLHWQVGQEAALAELLEKVDILIINH 253 (406)
T ss_pred CCCEEEEeC-CCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH--hhcCCCeEEEEeeCCCHHHHHHHhCCCCEEEECC
Confidence 356788555 66777777766543 3458999998754322211 1122357788899988654333346799999876
Q ss_pred C
Q 024665 222 A 222 (264)
Q Consensus 222 p 222 (264)
.
T Consensus 254 G 254 (406)
T PRK07424 254 G 254 (406)
T ss_pred C
Confidence 4
No 435
>PRK07806 short chain dehydrogenase; Provisional
Probab=72.98 E-value=27 Score=29.60 Aligned_cols=79 Identities=14% Similarity=0.167 Sum_probs=45.6
Q ss_pred CCCEEEEEcccCChHHHHHHHHhC-CCCEEEEEeCCh-HHHHHHHHH-hhcCCCeEEEEcCCCCchhhccc-------CC
Q 024665 143 PGARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSH-RSGRDLVNM-AKKRTNVIPIIEDARHPAKYRML-------VG 212 (264)
Q Consensus 143 ~g~~VLDlG~G~G~~s~~la~~~~-~~g~V~avD~s~-~~~~~l~~~-a~~~~nV~~i~~D~~~~~~~~~~-------~~ 212 (264)
++.+||-.|+.. .+..++++.+- ...+|+++..+. ...+.+... .....++.++..|+++....... ..
T Consensus 5 ~~k~vlItGasg-giG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 83 (248)
T PRK07806 5 PGKTALVTGSSR-GIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTDEESVAALMDTAREEFG 83 (248)
T ss_pred CCcEEEEECCCC-cHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence 356788888654 55665555442 334788887653 222222221 11223688999999986532111 13
Q ss_pred CccEEEEcCC
Q 024665 213 MVDVIFSDVA 222 (264)
Q Consensus 213 ~fD~V~~d~p 222 (264)
.+|+|+.+..
T Consensus 84 ~~d~vi~~ag 93 (248)
T PRK07806 84 GLDALVLNAS 93 (248)
T ss_pred CCcEEEECCC
Confidence 6899988764
No 436
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=72.93 E-value=10 Score=34.98 Aligned_cols=102 Identities=9% Similarity=-0.010 Sum_probs=54.1
Q ss_pred CCcchHHHHHHHhcccccCCCCCCE--EEEEcccCChHHHHHHHHhCCCCEEEEEeCChHH---HHHHHHHhhcCCCeEE
Q 024665 122 NPFRSKLAAAVLGGVDNIWIKPGAR--VLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRS---GRDLVNMAKKRTNVIP 196 (264)
Q Consensus 122 ~p~~s~l~~~il~~l~~~~l~~g~~--VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~---~~~l~~~a~~~~nV~~ 196 (264)
.|.++..+..|-..|.......+.. =+|+|+|.=.+--.+-.... .=..+++|++... +..+++.+.....|.+
T Consensus 79 VPnR~nYihwI~DLLss~q~~k~~i~~GiDIgtgasci~~llg~rq~-n~~f~~teidd~s~~~a~snV~qn~lss~ikv 157 (419)
T KOG2912|consen 79 VPNRLNYIHWIEDLLSSQQSDKSTIRRGIDIGTGASCIYPLLGARQN-NWYFLATEIDDMSFNYAKSNVEQNNLSSLIKV 157 (419)
T ss_pred CccchhhHHHHHHHhhcccCCCcceeeeeeccCchhhhHHhhhchhc-cceeeeeeccccccchhhccccccccccceee
Confidence 3444555555555555333333333 37887766554444433332 2467888888533 3333444433346777
Q ss_pred EEcCCCC---chhhccc-CCCccEEEEcCCCc
Q 024665 197 IIEDARH---PAKYRML-VGMVDVIFSDVAQP 224 (264)
Q Consensus 197 i~~D~~~---~~~~~~~-~~~fD~V~~d~p~~ 224 (264)
++....+ ...+.+. ...||.+.||||.-
T Consensus 158 V~~~~~ktll~d~~~~~~e~~ydFcMcNPPFf 189 (419)
T KOG2912|consen 158 VKVEPQKTLLMDALKEESEIIYDFCMCNPPFF 189 (419)
T ss_pred EEecchhhcchhhhccCccceeeEEecCCchh
Confidence 6664432 2222222 23599999999943
No 437
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=72.92 E-value=22 Score=30.65 Aligned_cols=77 Identities=18% Similarity=0.168 Sum_probs=47.8
Q ss_pred CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcc-------cCCCc
Q 024665 143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRM-------LVGMV 214 (264)
Q Consensus 143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~-------~~~~f 214 (264)
++.+||=.|+.+|. ...++..+ ....+|+.++.++..++++.+.. ..++.+++.|+.+...... ..+.+
T Consensus 5 ~~k~vlVtGas~gI-G~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~i 81 (263)
T PRK06200 5 HGQVALITGGGSGI-GRALVERFLAEGARVAVLERSAEKLASLRQRF--GDHVLVVEGDVTSYADNQRAVDQTVDAFGKL 81 (263)
T ss_pred CCCEEEEeCCCchH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh--CCcceEEEccCCCHHHHHHHHHHHHHhcCCC
Confidence 45688888876555 44444333 23458999999865544433322 2368899999988642211 12468
Q ss_pred cEEEEcCC
Q 024665 215 DVIFSDVA 222 (264)
Q Consensus 215 D~V~~d~p 222 (264)
|+++.++.
T Consensus 82 d~li~~ag 89 (263)
T PRK06200 82 DCFVGNAG 89 (263)
T ss_pred CEEEECCC
Confidence 99998765
No 438
>PRK06720 hypothetical protein; Provisional
Probab=72.88 E-value=45 Score=27.31 Aligned_cols=80 Identities=13% Similarity=0.221 Sum_probs=47.5
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHh-hcCCCeEEEEcCCCCchhhcc-------cCCCc
Q 024665 143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMA-KKRTNVIPIIEDARHPAKYRM-------LVGMV 214 (264)
Q Consensus 143 ~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a-~~~~nV~~i~~D~~~~~~~~~-------~~~~f 214 (264)
.+..+|-.|++.|.=......+.....+|+.+|.++...++..+.. .....+.++..|..+...... ..+.+
T Consensus 15 ~gk~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~v~~~~~~~G~i 94 (169)
T PRK06720 15 AGKVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQESGQATVEEITNLGGEALFVSYDMEKQGDWQRVISITLNAFSRI 94 (169)
T ss_pred CCCEEEEecCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 4667888888766533333233333468999998865443332222 222357788999987643211 12468
Q ss_pred cEEEEcCC
Q 024665 215 DVIFSDVA 222 (264)
Q Consensus 215 D~V~~d~p 222 (264)
|+++.++.
T Consensus 95 DilVnnAG 102 (169)
T PRK06720 95 DMLFQNAG 102 (169)
T ss_pred CEEEECCC
Confidence 99998865
No 439
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=72.86 E-value=44 Score=28.64 Aligned_cols=77 Identities=10% Similarity=0.175 Sum_probs=45.8
Q ss_pred CCCEEEEEcccCChHHHHHHH-HhCCCCEEEEEeCChHHHHHHHHH-hhcCCCeEEEEcCCCCchhhccc-------CCC
Q 024665 143 PGARVLYLGAASGTTVSHVSD-IVGPNGVVYAVEFSHRSGRDLVNM-AKKRTNVIPIIEDARHPAKYRML-------VGM 213 (264)
Q Consensus 143 ~g~~VLDlG~G~G~~s~~la~-~~~~~g~V~avD~s~~~~~~l~~~-a~~~~nV~~i~~D~~~~~~~~~~-------~~~ 213 (264)
.+.+||-.|+.+|. ...+++ +.....+|+.++.++.. ++.+. .....++.++..|+.+....... .+.
T Consensus 7 ~~k~~lItGas~gI-G~aia~~l~~~G~~vv~~~~~~~~--~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~ 83 (251)
T PRK12481 7 NGKVAIITGCNTGL-GQGMAIGLAKAGADIVGVGVAEAP--ETQAQVEALGRKFHFITADLIQQKDIDSIVSQAVEVMGH 83 (251)
T ss_pred CCCEEEEeCCCchH-HHHHHHHHHHCCCEEEEecCchHH--HHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHHHHHHcCC
Confidence 46789988876655 444333 33345578888766321 11111 12234788999999886532111 246
Q ss_pred ccEEEEcCC
Q 024665 214 VDVIFSDVA 222 (264)
Q Consensus 214 fD~V~~d~p 222 (264)
+|+++.++.
T Consensus 84 iD~lv~~ag 92 (251)
T PRK12481 84 IDILINNAG 92 (251)
T ss_pred CCEEEECCC
Confidence 899998765
No 440
>PRK08263 short chain dehydrogenase; Provisional
Probab=72.62 E-value=44 Score=29.00 Aligned_cols=75 Identities=16% Similarity=0.121 Sum_probs=47.4
Q ss_pred CEEEEEcccCChHHHHHHHHhC-CCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcc-------cCCCccE
Q 024665 145 ARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRM-------LVGMVDV 216 (264)
Q Consensus 145 ~~VLDlG~G~G~~s~~la~~~~-~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~-------~~~~fD~ 216 (264)
.+||=.|+ +|.+..++++.+- ...+|+.++.++..+.++.+.. ..++.++..|+.+...... ....+|+
T Consensus 4 k~vlItGa-sg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~ 80 (275)
T PRK08263 4 KVWFITGA-SRGFGRAWTEAALERGDRVVATARDTATLADLAEKY--GDRLLPLALDVTDRAAVFAAVETAVEHFGRLDI 80 (275)
T ss_pred CEEEEeCC-CChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhc--cCCeeEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence 46777775 6666777766542 3457999998865544433322 2367888999988653211 1246899
Q ss_pred EEEcCC
Q 024665 217 IFSDVA 222 (264)
Q Consensus 217 V~~d~p 222 (264)
|+.++.
T Consensus 81 vi~~ag 86 (275)
T PRK08263 81 VVNNAG 86 (275)
T ss_pred EEECCC
Confidence 998765
No 441
>PRK07774 short chain dehydrogenase; Provisional
Probab=72.62 E-value=27 Score=29.59 Aligned_cols=79 Identities=13% Similarity=0.217 Sum_probs=48.9
Q ss_pred CCCEEEEEcccCChHHHHHHHHhC-CCCEEEEEeCChHHHHHHHHHhh-cCCCeEEEEcCCCCchhhcc-------cCCC
Q 024665 143 PGARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAK-KRTNVIPIIEDARHPAKYRM-------LVGM 213 (264)
Q Consensus 143 ~g~~VLDlG~G~G~~s~~la~~~~-~~g~V~avD~s~~~~~~l~~~a~-~~~nV~~i~~D~~~~~~~~~-------~~~~ 213 (264)
.+.+||=.| ++|.+..+++..+- ...+|+.++.++....++.+... ...++.++..|+++...... ..+.
T Consensus 5 ~~k~vlItG-asg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 83 (250)
T PRK07774 5 DDKVAIVTG-AAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVADGGTAIAVQVDVSDPDSAKAMADATVSAFGG 83 (250)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHhCC
Confidence 456788777 55666776665542 33589999988644333333222 22367888999988653211 1236
Q ss_pred ccEEEEcCC
Q 024665 214 VDVIFSDVA 222 (264)
Q Consensus 214 fD~V~~d~p 222 (264)
+|+||.+..
T Consensus 84 id~vi~~ag 92 (250)
T PRK07774 84 IDYLVNNAA 92 (250)
T ss_pred CCEEEECCC
Confidence 899998765
No 442
>PRK06123 short chain dehydrogenase; Provisional
Probab=72.57 E-value=56 Score=27.59 Aligned_cols=77 Identities=14% Similarity=0.232 Sum_probs=44.0
Q ss_pred CEEEEEcccCChHHHHHHHHhCCCC-EEEEEeCC-hHHHHHHHHHhhc-CCCeEEEEcCCCCchhhccc-------CCCc
Q 024665 145 ARVLYLGAASGTTVSHVSDIVGPNG-VVYAVEFS-HRSGRDLVNMAKK-RTNVIPIIEDARHPAKYRML-------VGMV 214 (264)
Q Consensus 145 ~~VLDlG~G~G~~s~~la~~~~~~g-~V~avD~s-~~~~~~l~~~a~~-~~nV~~i~~D~~~~~~~~~~-------~~~f 214 (264)
..||=.|+ ++.+...+++.+-..+ .|+.++.+ +....++.+.... ..++.++..|+.+....... .+.+
T Consensus 3 ~~~lVtG~-~~~iG~~~a~~l~~~G~~vv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 81 (248)
T PRK06123 3 KVMIITGA-SRGIGAATALLAAERGYAVCLNYLRNRDAAEAVVQAIRRQGGEALAVAADVADEADVLRLFEAVDRELGRL 81 (248)
T ss_pred CEEEEECC-CchHHHHHHHHHHHCCCeEEEecCCCHHHHHHHHHHHHhCCCcEEEEEeccCCHHHHHHHHHHHHHHhCCC
Confidence 46777785 5667777666654343 66666543 3332233222222 23678899999886432111 2468
Q ss_pred cEEEEcCC
Q 024665 215 DVIFSDVA 222 (264)
Q Consensus 215 D~V~~d~p 222 (264)
|+|+.++.
T Consensus 82 d~li~~ag 89 (248)
T PRK06123 82 DALVNNAG 89 (248)
T ss_pred CEEEECCC
Confidence 99988765
No 443
>PRK05854 short chain dehydrogenase; Provisional
Probab=72.38 E-value=19 Score=32.38 Aligned_cols=79 Identities=13% Similarity=0.102 Sum_probs=47.8
Q ss_pred CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhh-c--CCCeEEEEcCCCCchhhc-------ccC
Q 024665 143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAK-K--RTNVIPIIEDARHPAKYR-------MLV 211 (264)
Q Consensus 143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~-~--~~nV~~i~~D~~~~~~~~-------~~~ 211 (264)
.+.+||=.|+.+|. ...+++.+ ....+|+.+..++...++.++... . ..+++++..|+.++...+ ...
T Consensus 13 ~gk~~lITGas~GI-G~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~~ 91 (313)
T PRK05854 13 SGKRAVVTGASDGL-GLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAEG 91 (313)
T ss_pred CCCEEEEeCCCChH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHhC
Confidence 35678877876555 44444333 334689999888544333333221 1 236889999998865321 112
Q ss_pred CCccEEEEcCC
Q 024665 212 GMVDVIFSDVA 222 (264)
Q Consensus 212 ~~fD~V~~d~p 222 (264)
..+|+++.++.
T Consensus 92 ~~iD~li~nAG 102 (313)
T PRK05854 92 RPIHLLINNAG 102 (313)
T ss_pred CCccEEEECCc
Confidence 46899998865
No 444
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=72.30 E-value=19 Score=32.14 Aligned_cols=79 Identities=13% Similarity=0.157 Sum_probs=49.1
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCC-CCEEEEEeCChHHHHHHHHHh---hcCCCeEEEEcCCCCchhhcccCCCccEEE
Q 024665 143 PGARVLYLGAASGTTVSHVSDIVGP-NGVVYAVEFSHRSGRDLVNMA---KKRTNVIPIIEDARHPAKYRMLVGMVDVIF 218 (264)
Q Consensus 143 ~g~~VLDlG~G~G~~s~~la~~~~~-~g~V~avD~s~~~~~~l~~~a---~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~ 218 (264)
.+.+||=.| |+|.+..++++.+-. ..+|+++..++.......... ....+++++..|+++..........+|+|+
T Consensus 4 ~~k~vlVtG-~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi 82 (325)
T PLN02989 4 GGKVVCVTG-ASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETVF 82 (325)
T ss_pred CCCEEEEEC-CchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEEE
Confidence 356788777 578888888765533 347877766643221211111 112478999999998754333345689999
Q ss_pred EcCC
Q 024665 219 SDVA 222 (264)
Q Consensus 219 ~d~p 222 (264)
..+.
T Consensus 83 h~A~ 86 (325)
T PLN02989 83 HTAS 86 (325)
T ss_pred EeCC
Confidence 8765
No 445
>PRK08264 short chain dehydrogenase; Validated
Probab=72.02 E-value=33 Score=28.84 Aligned_cols=73 Identities=22% Similarity=0.246 Sum_probs=47.0
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCC-C-EEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhccc---CCCccEE
Q 024665 143 PGARVLYLGAASGTTVSHVSDIVGPN-G-VVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRML---VGMVDVI 217 (264)
Q Consensus 143 ~g~~VLDlG~G~G~~s~~la~~~~~~-g-~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~---~~~fD~V 217 (264)
.+.+||=.|+ +|.+..+++..+-.. . +|+.++.++...++ ...+++++..|+.+....... ...+|+|
T Consensus 5 ~~~~vlItGg-sg~iG~~la~~l~~~G~~~V~~~~r~~~~~~~------~~~~~~~~~~D~~~~~~~~~~~~~~~~id~v 77 (238)
T PRK08264 5 KGKVVLVTGA-NRGIGRAFVEQLLARGAAKVYAAARDPESVTD------LGPRVVPLQLDVTDPASVAAAAEAASDVTIL 77 (238)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCcccEEEEecChhhhhh------cCCceEEEEecCCCHHHHHHHHHhcCCCCEE
Confidence 4467887775 677777666655433 3 79999888543211 234789999999886543211 2358999
Q ss_pred EEcCC
Q 024665 218 FSDVA 222 (264)
Q Consensus 218 ~~d~p 222 (264)
+.+..
T Consensus 78 i~~ag 82 (238)
T PRK08264 78 VNNAG 82 (238)
T ss_pred EECCC
Confidence 88765
No 446
>PRK12746 short chain dehydrogenase; Provisional
Probab=71.87 E-value=55 Score=27.79 Aligned_cols=78 Identities=14% Similarity=0.182 Sum_probs=44.7
Q ss_pred CCEEEEEcccCChHHHHHHHHhCCCC-EEEEE-eCChHHHHHHHHHhh-cCCCeEEEEcCCCCchhhccc----------
Q 024665 144 GARVLYLGAASGTTVSHVSDIVGPNG-VVYAV-EFSHRSGRDLVNMAK-KRTNVIPIIEDARHPAKYRML---------- 210 (264)
Q Consensus 144 g~~VLDlG~G~G~~s~~la~~~~~~g-~V~av-D~s~~~~~~l~~~a~-~~~nV~~i~~D~~~~~~~~~~---------- 210 (264)
+.+||=.|+ +|.+..++++.+-..+ +|+.+ ..+.....+..+... ...++++++.|+.+.......
T Consensus 6 ~~~ilItGa-sg~iG~~la~~l~~~G~~v~i~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~i~~~~~~~~~~~~~ 84 (254)
T PRK12746 6 GKVALVTGA-SRGIGRAIAMRLANDGALVAIHYGRNKQAADETIREIESNGGKAFLIEADLNSIDGVKKLVEQLKNELQI 84 (254)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCcCCHHHHHHHHHHHHHHhcc
Confidence 457887775 6777777776654344 45443 344332222222222 223688999999986532111
Q ss_pred ---CCCccEEEEcCC
Q 024665 211 ---VGMVDVIFSDVA 222 (264)
Q Consensus 211 ---~~~fD~V~~d~p 222 (264)
...+|+|+.++.
T Consensus 85 ~~~~~~id~vi~~ag 99 (254)
T PRK12746 85 RVGTSEIDILVNNAG 99 (254)
T ss_pred ccCCCCccEEEECCC
Confidence 035899998765
No 447
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=71.57 E-value=11 Score=27.88 Aligned_cols=13 Identities=8% Similarity=0.243 Sum_probs=10.5
Q ss_pred EcccCChHHHHHH
Q 024665 150 LGAASGTTVSHVS 162 (264)
Q Consensus 150 lG~G~G~~s~~la 162 (264)
+.||+|.-|+.++
T Consensus 7 vvCgsG~~TS~m~ 19 (94)
T PRK10310 7 VACGGAVATSTMA 19 (94)
T ss_pred EECCCchhHHHHH
Confidence 7899999777774
No 448
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=71.56 E-value=52 Score=27.81 Aligned_cols=79 Identities=13% Similarity=0.171 Sum_probs=45.7
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCC-EEEEE-eCChHHHHHHHHHhh-cCCCeEEEEcCCCCchhhcc-------cCC
Q 024665 143 PGARVLYLGAASGTTVSHVSDIVGPNG-VVYAV-EFSHRSGRDLVNMAK-KRTNVIPIIEDARHPAKYRM-------LVG 212 (264)
Q Consensus 143 ~g~~VLDlG~G~G~~s~~la~~~~~~g-~V~av-D~s~~~~~~l~~~a~-~~~nV~~i~~D~~~~~~~~~-------~~~ 212 (264)
++.+||=.|+. |.+..++++.+-..+ +|+.+ +.+....+++.+... ...++.++..|+.+...... ..+
T Consensus 3 ~~~~vlItGa~-g~iG~~~a~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (250)
T PRK08063 3 SGKVALVTGSS-RGIGKAIALRLAEEGYDIAVNYARSRKAAEETAEEIEALGRKALAVKANVGDVEKIKEMFAQIDEEFG 81 (250)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 35678877774 666666666554333 66654 344433333333222 23478899999988652211 113
Q ss_pred CccEEEEcCC
Q 024665 213 MVDVIFSDVA 222 (264)
Q Consensus 213 ~fD~V~~d~p 222 (264)
.+|+|+.+..
T Consensus 82 ~id~vi~~ag 91 (250)
T PRK08063 82 RLDVFVNNAA 91 (250)
T ss_pred CCCEEEECCC
Confidence 6899998875
No 449
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=71.54 E-value=23 Score=30.70 Aligned_cols=80 Identities=9% Similarity=0.083 Sum_probs=48.2
Q ss_pred CCCEEEEEcc-cCChHHHHHHHHhC-CCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhc-------ccCCC
Q 024665 143 PGARVLYLGA-ASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYR-------MLVGM 213 (264)
Q Consensus 143 ~g~~VLDlG~-G~G~~s~~la~~~~-~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~-------~~~~~ 213 (264)
.+.+||=.|+ +++.+...+|+.+- ...+|+.+..+.+..+.+.+.......+.+++.|+.+..... ...+.
T Consensus 5 ~~k~~lITGa~~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 84 (261)
T PRK08690 5 QGKKILITGMISERSIAYGIAKACREQGAELAFTYVVDKLEERVRKMAAELDSELVFRCDVASDDEINQVFADLGKHWDG 84 (261)
T ss_pred CCcEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHhccCCceEEECCCCCHHHHHHHHHHHHHHhCC
Confidence 4568888887 46677777776653 334777776554332222233222234567899998865321 11257
Q ss_pred ccEEEEcCC
Q 024665 214 VDVIFSDVA 222 (264)
Q Consensus 214 fD~V~~d~p 222 (264)
+|+++.|+.
T Consensus 85 iD~lVnnAG 93 (261)
T PRK08690 85 LDGLVHSIG 93 (261)
T ss_pred CcEEEECCc
Confidence 999998875
No 450
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=71.51 E-value=18 Score=28.63 Aligned_cols=75 Identities=23% Similarity=0.294 Sum_probs=45.6
Q ss_pred EEEEEcccCCh---HHHHHHHHhCCCCEEEEEeCC--hHHHHHHHHHhh-cCCCeEEEEcCCCCchhhc-------ccCC
Q 024665 146 RVLYLGAASGT---TVSHVSDIVGPNGVVYAVEFS--HRSGRDLVNMAK-KRTNVIPIIEDARHPAKYR-------MLVG 212 (264)
Q Consensus 146 ~VLDlG~G~G~---~s~~la~~~~~~g~V~avD~s--~~~~~~l~~~a~-~~~nV~~i~~D~~~~~~~~-------~~~~ 212 (264)
+||=.|+.+|. ++.++++. ...+|+.+..+ .....++++..+ ...++.+++.|+.+....+ ....
T Consensus 2 ~~lItGa~~giG~~~a~~l~~~--g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 79 (167)
T PF00106_consen 2 TVLITGASSGIGRALARALARR--GARVVILTSRSEDSEGAQELIQELKAPGAKITFIECDLSDPESIRALIEEVIKRFG 79 (167)
T ss_dssp EEEEETTTSHHHHHHHHHHHHT--TTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESETTSHHHHHHHHHHHHHHHS
T ss_pred EEEEECCCCHHHHHHHHHHHhc--CceEEEEeeecccccccccccccccccccccccccccccccccccccccccccccc
Confidence 46667776554 33344433 23478888888 444444433332 3358999999998864221 1135
Q ss_pred CccEEEEcCC
Q 024665 213 MVDVIFSDVA 222 (264)
Q Consensus 213 ~fD~V~~d~p 222 (264)
.+|+++.+..
T Consensus 80 ~ld~li~~ag 89 (167)
T PF00106_consen 80 PLDILINNAG 89 (167)
T ss_dssp SESEEEEECS
T ss_pred cccccccccc
Confidence 7999998876
No 451
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=71.33 E-value=61 Score=27.36 Aligned_cols=78 Identities=10% Similarity=0.145 Sum_probs=43.4
Q ss_pred CCEEEEEcccCChHHHHHHHHhC-CCCEEEEEeC-ChHHHHHHHHHh-hcCCCeEEEEcCCCCchhhcc-------cCCC
Q 024665 144 GARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEF-SHRSGRDLVNMA-KKRTNVIPIIEDARHPAKYRM-------LVGM 213 (264)
Q Consensus 144 g~~VLDlG~G~G~~s~~la~~~~-~~g~V~avD~-s~~~~~~l~~~a-~~~~nV~~i~~D~~~~~~~~~-------~~~~ 213 (264)
+.+||-.|+ +|.+..++++.+- ...+|+.+.. ++.......+.. ....++.++..|+++...... ....
T Consensus 6 ~~~vlitGa-sg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 84 (252)
T PRK06077 6 DKVVVVTGS-GRGIGRAIAVRLAKEGSLVVVNAKKRAEEMNETLKMVKENGGEGIGVLADVSTREGCETLAKATIDRYGV 84 (252)
T ss_pred CcEEEEeCC-CChHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHHcCCeeEEEEeccCCHHHHHHHHHHHHHHcCC
Confidence 468888886 5556666665443 3345655443 332222222222 222367788899987653211 1246
Q ss_pred ccEEEEcCC
Q 024665 214 VDVIFSDVA 222 (264)
Q Consensus 214 fD~V~~d~p 222 (264)
+|+|+.+..
T Consensus 85 ~d~vi~~ag 93 (252)
T PRK06077 85 ADILVNNAG 93 (252)
T ss_pred CCEEEECCC
Confidence 899998875
No 452
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=71.30 E-value=15 Score=29.12 Aligned_cols=70 Identities=20% Similarity=0.223 Sum_probs=37.5
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEcCC
Q 024665 143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVA 222 (264)
Q Consensus 143 ~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p 222 (264)
+..+|+++|-|.=..........+ ..|+++|+.+. .++ ..+.++.-|+.++.. .+-..+|+|.+--|
T Consensus 13 ~~~kiVEVGiG~~~~vA~~L~~~G--~dV~~tDi~~~-------~a~--~g~~~v~DDif~P~l--~iY~~a~lIYSiRP 79 (127)
T PF03686_consen 13 NYGKIVEVGIGFNPEVAKKLKERG--FDVIATDINPR-------KAP--EGVNFVVDDIFNPNL--EIYEGADLIYSIRP 79 (127)
T ss_dssp -SSEEEEET-TT--HHHHHHHHHS---EEEEE-SS-S-------------STTEE---SSS--H--HHHTTEEEEEEES-
T ss_pred CCCcEEEECcCCCHHHHHHHHHcC--CcEEEEECccc-------ccc--cCcceeeecccCCCH--HHhcCCcEEEEeCC
Confidence 445999999998775554444433 68999999974 222 467799999998753 12358999998655
Q ss_pred Cch
Q 024665 223 QPD 225 (264)
Q Consensus 223 ~~~ 225 (264)
+|+
T Consensus 80 P~E 82 (127)
T PF03686_consen 80 PPE 82 (127)
T ss_dssp -TT
T ss_pred ChH
Confidence 554
No 453
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=71.23 E-value=6.3 Score=29.75 Aligned_cols=54 Identities=11% Similarity=0.061 Sum_probs=34.0
Q ss_pred EEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEcCC
Q 024665 147 VLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVA 222 (264)
Q Consensus 147 VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p 222 (264)
|| ++|++|..|..+++.+. +..+.. .-++++......+... ....+|+|++-|.
T Consensus 3 Il-l~C~~GaSSs~la~km~----------------~~a~~~--gi~~~i~a~~~~e~~~---~~~~~Dvill~PQ 56 (99)
T cd05565 3 VL-VLCAGGGTSGLLANALN----------------KGAKER--GVPLEAAAGAYGSHYD---MIPDYDLVILAPQ 56 (99)
T ss_pred EE-EECCCCCCHHHHHHHHH----------------HHHHHC--CCcEEEEEeeHHHHHH---hccCCCEEEEcCh
Confidence 44 78899988888888753 212211 2256666666665543 2457898887654
No 454
>PRK05884 short chain dehydrogenase; Provisional
Probab=71.17 E-value=33 Score=29.03 Aligned_cols=72 Identities=18% Similarity=0.122 Sum_probs=41.9
Q ss_pred EEEEEcccCChHHHHHHHHhC-CCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcc----cCCCccEEEEc
Q 024665 146 RVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRM----LVGMVDVIFSD 220 (264)
Q Consensus 146 ~VLDlG~G~G~~s~~la~~~~-~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~----~~~~fD~V~~d 220 (264)
+||=.|+..| +...+++.+- ...+|+.++.+++-++++.+ ..+++++..|+.+...... ....+|+++.+
T Consensus 2 ~vlItGas~g-iG~~ia~~l~~~g~~v~~~~r~~~~~~~~~~----~~~~~~~~~D~~~~~~v~~~~~~~~~~id~lv~~ 76 (223)
T PRK05884 2 EVLVTGGDTD-LGRTIAEGFRNDGHKVTLVGARRDDLEVAAK----ELDVDAIVCDNTDPASLEEARGLFPHHLDTIVNV 76 (223)
T ss_pred eEEEEeCCch-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----hccCcEEecCCCCHHHHHHHHHHHhhcCcEEEEC
Confidence 4666666555 5555554442 34589999988643322222 1246788899987653211 11358999877
Q ss_pred CC
Q 024665 221 VA 222 (264)
Q Consensus 221 ~p 222 (264)
+.
T Consensus 77 ag 78 (223)
T PRK05884 77 PA 78 (223)
T ss_pred CC
Confidence 53
No 455
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=71.17 E-value=35 Score=36.41 Aligned_cols=76 Identities=20% Similarity=0.237 Sum_probs=47.5
Q ss_pred CCCEEEEEcccCChHHHHHHHHhC--CCC-------------EEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhh
Q 024665 143 PGARVLYLGAASGTTVSHVSDIVG--PNG-------------VVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKY 207 (264)
Q Consensus 143 ~g~~VLDlG~G~G~~s~~la~~~~--~~g-------------~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~ 207 (264)
...+||=||| |.++...++.+. +.. .|+..|.+++.++.+.+ ..++++++..|+.+....
T Consensus 568 ~~~rIlVLGA--G~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~---~~~~~~~v~lDv~D~e~L 642 (1042)
T PLN02819 568 KSQNVLILGA--GRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVE---GIENAEAVQLDVSDSESL 642 (1042)
T ss_pred cCCcEEEECC--CHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHH---hcCCCceEEeecCCHHHH
Confidence 3558999998 555544444432 222 37778888654433322 234788889988876543
Q ss_pred cccCCCccEEEEcCCC
Q 024665 208 RMLVGMVDVIFSDVAQ 223 (264)
Q Consensus 208 ~~~~~~fD~V~~d~p~ 223 (264)
......+|+|++-.|.
T Consensus 643 ~~~v~~~DaVIsalP~ 658 (1042)
T PLN02819 643 LKYVSQVDVVISLLPA 658 (1042)
T ss_pred HHhhcCCCEEEECCCc
Confidence 2333569999988874
No 456
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=71.16 E-value=12 Score=34.77 Aligned_cols=40 Identities=23% Similarity=0.364 Sum_probs=32.5
Q ss_pred CCCCCCEEEEEcccC-ChHHHHHHHHhCCCCEEEEEeCChHH
Q 024665 140 WIKPGARVLYLGAAS-GTTVSHVSDIVGPNGVVYAVEFSHRS 180 (264)
Q Consensus 140 ~l~~g~~VLDlG~G~-G~~s~~la~~~~~~g~V~avD~s~~~ 180 (264)
.+.++++||.+|||+ |..++.+|+..+ ..+|+++|.++..
T Consensus 181 ~~~~g~~VlV~g~G~vG~~~~~la~~~g-~~~vi~~~~~~~~ 221 (386)
T cd08283 181 EVKPGDTVAVWGCGPVGLFAARSAKLLG-AERVIAIDRVPER 221 (386)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHH
Confidence 578899999999887 778888888864 3469999998754
No 457
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=70.89 E-value=14 Score=29.91 Aligned_cols=64 Identities=17% Similarity=0.106 Sum_probs=46.0
Q ss_pred cCChHHHHHHHHhC-CCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEcCCC
Q 024665 153 ASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQ 223 (264)
Q Consensus 153 G~G~~s~~la~~~~-~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p~ 223 (264)
++|.+...+++.+- ...+|+++=.++.-..+ ..++++++.|..++.........+|+|+.-.+.
T Consensus 6 atG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~-------~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~ 70 (183)
T PF13460_consen 6 ATGFVGRALAKQLLRRGHEVTALVRSPSKAED-------SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGP 70 (183)
T ss_dssp TTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH-------CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHS
T ss_pred CCChHHHHHHHHHHHCCCEEEEEecCchhccc-------ccccccceeeehhhhhhhhhhhhcchhhhhhhh
Confidence 57888887776653 33589999888642111 568999999999986544444589999987764
No 458
>PRK05599 hypothetical protein; Provisional
Probab=70.61 E-value=42 Score=28.72 Aligned_cols=76 Identities=18% Similarity=0.232 Sum_probs=47.4
Q ss_pred EEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcC--CCeEEEEcCCCCchhhc-------ccCCCccE
Q 024665 146 RVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHPAKYR-------MLVGMVDV 216 (264)
Q Consensus 146 ~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~--~nV~~i~~D~~~~~~~~-------~~~~~fD~ 216 (264)
.||=.|+++| +...+|..+....+|+.++.++..++++.+..... ..+.++..|+.+..... ...+.+|+
T Consensus 2 ~vlItGas~G-IG~aia~~l~~g~~Vil~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~id~ 80 (246)
T PRK05599 2 SILILGGTSD-IAGEIATLLCHGEDVVLAARRPEAAQGLASDLRQRGATSVHVLSFDAQDLDTHRELVKQTQELAGEISL 80 (246)
T ss_pred eEEEEeCccH-HHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEcccCCHHHHHHHHHHHHHhcCCCCE
Confidence 4676777554 45555555444568999988865554444433322 24788999998865321 11257899
Q ss_pred EEEcCC
Q 024665 217 IFSDVA 222 (264)
Q Consensus 217 V~~d~p 222 (264)
++.++.
T Consensus 81 lv~nag 86 (246)
T PRK05599 81 AVVAFG 86 (246)
T ss_pred EEEecC
Confidence 998765
No 459
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=70.50 E-value=79 Score=28.17 Aligned_cols=79 Identities=15% Similarity=0.216 Sum_probs=46.2
Q ss_pred CCCEEEEEcccCChHHHHHHHH-hCCCCEEEEEeCC-hHHHHHHHHHhh-cCCCeEEEEcCCCCchhhccc------CCC
Q 024665 143 PGARVLYLGAASGTTVSHVSDI-VGPNGVVYAVEFS-HRSGRDLVNMAK-KRTNVIPIIEDARHPAKYRML------VGM 213 (264)
Q Consensus 143 ~g~~VLDlG~G~G~~s~~la~~-~~~~g~V~avD~s-~~~~~~l~~~a~-~~~nV~~i~~D~~~~~~~~~~------~~~ 213 (264)
.+.++|=.|++.|. ...++.. .....+|+.+|.+ ....+++.+... ...++.++..|+.+......+ .+.
T Consensus 11 ~~k~~lVTGas~gI-G~~ia~~L~~~Ga~Vv~~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dv~d~~~~~~~~~~~~~~g~ 89 (306)
T PRK07792 11 SGKVAVVTGAAAGL-GRAEALGLARLGATVVVNDVASALDASDVLDEIRAAGAKAVAVAGDISQRATADELVATAVGLGG 89 (306)
T ss_pred CCCEEEEECCCChH-HHHHHHHHHHCCCEEEEecCCchhHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHhCC
Confidence 46688877877655 4443333 3334578888875 222333333222 223788999999885422111 256
Q ss_pred ccEEEEcCC
Q 024665 214 VDVIFSDVA 222 (264)
Q Consensus 214 fD~V~~d~p 222 (264)
+|+|+.+..
T Consensus 90 iD~li~nAG 98 (306)
T PRK07792 90 LDIVVNNAG 98 (306)
T ss_pred CCEEEECCC
Confidence 899998765
No 460
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=70.37 E-value=67 Score=27.31 Aligned_cols=74 Identities=18% Similarity=0.126 Sum_probs=43.7
Q ss_pred EEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhccc-------CCCccEE
Q 024665 146 RVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRML-------VGMVDVI 217 (264)
Q Consensus 146 ~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~-------~~~fD~V 217 (264)
+||=.|+ +|.+...+++.+ ....+|+.++.++.-+..+.+.. ..+++++..|+.+....... ...+|+|
T Consensus 2 ~vlItGa-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id~v 78 (248)
T PRK10538 2 IVLVTGA-TAGFGECITRRFIQQGHKVIATGRRQERLQELKDEL--GDNLYIAQLDVRNRAAIEEMLASLPAEWRNIDVL 78 (248)
T ss_pred EEEEECC-CchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh--ccceEEEEecCCCHHHHHHHHHHHHHHcCCCCEE
Confidence 3454554 445566665554 33458999999865433332221 23688999999886432111 1368999
Q ss_pred EEcCC
Q 024665 218 FSDVA 222 (264)
Q Consensus 218 ~~d~p 222 (264)
+.+..
T Consensus 79 i~~ag 83 (248)
T PRK10538 79 VNNAG 83 (248)
T ss_pred EECCC
Confidence 97653
No 461
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=69.90 E-value=64 Score=27.56 Aligned_cols=79 Identities=13% Similarity=0.064 Sum_probs=46.4
Q ss_pred CCEEEEEcccC-ChHHHHHHHHhCC-CCEEEEEeCC-----------hHHHHHHHHHh-hcCCCeEEEEcCCCCchhhc-
Q 024665 144 GARVLYLGAAS-GTTVSHVSDIVGP-NGVVYAVEFS-----------HRSGRDLVNMA-KKRTNVIPIIEDARHPAKYR- 208 (264)
Q Consensus 144 g~~VLDlG~G~-G~~s~~la~~~~~-~g~V~avD~s-----------~~~~~~l~~~a-~~~~nV~~i~~D~~~~~~~~- 208 (264)
+.+||=.|+.. +.+...++..+-. ..+|+.++.+ ......+.+.. ....+++++..|+.+.....
T Consensus 5 ~k~vlItGas~~~giG~~la~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 84 (256)
T PRK12748 5 KKIALVTGASRLNGIGAAVCRRLAAKGIDIFFTYWSPYDKTMPWGMHDKEPVLLKEEIESYGVRCEHMEIDLSQPYAPNR 84 (256)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHcCCcEEEEcCCccccccccccchhhHHHHHHHHHhcCCeEEEEECCCCCHHHHHH
Confidence 46788889874 5677766655532 3478888765 11111121211 12336899999998865311
Q ss_pred ------ccCCCccEEEEcCC
Q 024665 209 ------MLVGMVDVIFSDVA 222 (264)
Q Consensus 209 ------~~~~~fD~V~~d~p 222 (264)
...+.+|+|+.+..
T Consensus 85 ~~~~~~~~~g~id~vi~~ag 104 (256)
T PRK12748 85 VFYAVSERLGDPSILINNAA 104 (256)
T ss_pred HHHHHHHhCCCCCEEEECCC
Confidence 11246899998764
No 462
>PRK06128 oxidoreductase; Provisional
Probab=69.79 E-value=50 Score=29.24 Aligned_cols=79 Identities=13% Similarity=0.184 Sum_probs=44.4
Q ss_pred CCCEEEEEcccCChHHHHHHHHhC-CCCEEEEEeCChH--HHHHHHHHhh-cCCCeEEEEcCCCCchhhcc-------cC
Q 024665 143 PGARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHR--SGRDLVNMAK-KRTNVIPIIEDARHPAKYRM-------LV 211 (264)
Q Consensus 143 ~g~~VLDlG~G~G~~s~~la~~~~-~~g~V~avD~s~~--~~~~l~~~a~-~~~nV~~i~~D~~~~~~~~~-------~~ 211 (264)
.+.+||=.|+. +.+...+++.+- ...+|+.+..+.+ ..+++.+... ...++.++..|+.+...... ..
T Consensus 54 ~~k~vlITGas-~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 132 (300)
T PRK06128 54 QGRKALITGAD-SGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQAEGRKAVALPGDLKDEAFCRQLVERAVKEL 132 (300)
T ss_pred CCCEEEEecCC-CcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHHHHHh
Confidence 35688888864 455555554443 2346776665421 1222222222 22368889999988642211 12
Q ss_pred CCccEEEEcCC
Q 024665 212 GMVDVIFSDVA 222 (264)
Q Consensus 212 ~~fD~V~~d~p 222 (264)
..+|+|+.+..
T Consensus 133 g~iD~lV~nAg 143 (300)
T PRK06128 133 GGLDILVNIAG 143 (300)
T ss_pred CCCCEEEECCc
Confidence 46899998875
No 463
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=69.57 E-value=23 Score=27.70 Aligned_cols=71 Identities=17% Similarity=0.211 Sum_probs=47.8
Q ss_pred EEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEcCCCch
Q 024665 146 RVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPD 225 (264)
Q Consensus 146 ~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p~~~ 225 (264)
+|+++|.|.=.... ..+......|+++|+++. .++ .-+.++.-|++++.- .+-...|+|.+--|+|+
T Consensus 16 kVvEVGiG~~~~VA--~~L~e~g~dv~atDI~~~-------~a~--~g~~~v~DDitnP~~--~iY~~A~lIYSiRpppE 82 (129)
T COG1255 16 KVVEVGIGFFLDVA--KRLAERGFDVLATDINEK-------TAP--EGLRFVVDDITNPNI--SIYEGADLIYSIRPPPE 82 (129)
T ss_pred cEEEEccchHHHHH--HHHHHcCCcEEEEecccc-------cCc--ccceEEEccCCCccH--HHhhCccceeecCCCHH
Confidence 99999887544322 222223468999999973 232 468899999998753 23367899998777776
Q ss_pred HHHH
Q 024665 226 QVCF 229 (264)
Q Consensus 226 ~~~~ 229 (264)
....
T Consensus 83 l~~~ 86 (129)
T COG1255 83 LQSA 86 (129)
T ss_pred HHHH
Confidence 5443
No 464
>PRK08251 short chain dehydrogenase; Provisional
Probab=69.35 E-value=32 Score=29.13 Aligned_cols=77 Identities=12% Similarity=0.024 Sum_probs=47.8
Q ss_pred CEEEEEcccCChHHHHHHHHhC-CCCEEEEEeCChHHHHHHHHHhhc---CCCeEEEEcCCCCchhhc-------ccCCC
Q 024665 145 ARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKK---RTNVIPIIEDARHPAKYR-------MLVGM 213 (264)
Q Consensus 145 ~~VLDlG~G~G~~s~~la~~~~-~~g~V~avD~s~~~~~~l~~~a~~---~~nV~~i~~D~~~~~~~~-------~~~~~ 213 (264)
.+||=.|+ ++.+..++++.+- ...+|+.++.++...+++.+.... ..+++++..|+.+..... ...+.
T Consensus 3 k~vlItGa-s~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 81 (248)
T PRK08251 3 QKILITGA-SSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDELGG 81 (248)
T ss_pred CEEEEECC-CCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 46787775 5666666665543 234899999886554444332222 237899999999864321 11246
Q ss_pred ccEEEEcCC
Q 024665 214 VDVIFSDVA 222 (264)
Q Consensus 214 fD~V~~d~p 222 (264)
+|+|+.+..
T Consensus 82 id~vi~~ag 90 (248)
T PRK08251 82 LDRVIVNAG 90 (248)
T ss_pred CCEEEECCC
Confidence 899998764
No 465
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=69.30 E-value=22 Score=32.25 Aligned_cols=71 Identities=17% Similarity=0.236 Sum_probs=40.9
Q ss_pred ccCChHHHHHHHHhCCC--CEEEEEeCChHHHHHHHHHhh---cCCCe----EEEEcCCCCchhhcccCC--CccEEEEc
Q 024665 152 AASGTTVSHVSDIVGPN--GVVYAVEFSHRSGRDLVNMAK---KRTNV----IPIIEDARHPAKYRMLVG--MVDVIFSD 220 (264)
Q Consensus 152 ~G~G~~s~~la~~~~~~--g~V~avD~s~~~~~~l~~~a~---~~~nV----~~i~~D~~~~~~~~~~~~--~fD~V~~d 220 (264)
-|.|++.+.|.+.+-.. .+|+.+|.++..+-++..... ...++ .++.+|+++......... .+|+||.-
T Consensus 5 Ga~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~~~~~~pdiVfHa 84 (293)
T PF02719_consen 5 GAGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRIFEEYKPDIVFHA 84 (293)
T ss_dssp TTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHHTT--T-SEEEE-
T ss_pred ccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHHHhhcCCCEEEEC
Confidence 46789988888776322 589999999765444443331 12234 456999998754323333 89999976
Q ss_pred CC
Q 024665 221 VA 222 (264)
Q Consensus 221 ~p 222 (264)
++
T Consensus 85 AA 86 (293)
T PF02719_consen 85 AA 86 (293)
T ss_dssp --
T ss_pred hh
Confidence 65
No 466
>CHL00194 ycf39 Ycf39; Provisional
Probab=69.20 E-value=19 Score=32.33 Aligned_cols=70 Identities=16% Similarity=0.029 Sum_probs=45.3
Q ss_pred EEEEEcccCChHHHHHHHHhCC-CCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEcC
Q 024665 146 RVLYLGAASGTTVSHVSDIVGP-NGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDV 221 (264)
Q Consensus 146 ~VLDlG~G~G~~s~~la~~~~~-~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~ 221 (264)
+|| +--|+|.+..++++.+-. .-+|+++..++.....+ . ..+++++.+|++++.........+|+|+.-.
T Consensus 2 kIl-VtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l---~--~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~ 72 (317)
T CHL00194 2 SLL-VIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFL---K--EWGAELVYGDLSLPETLPPSFKGVTAIIDAS 72 (317)
T ss_pred EEE-EECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhH---h--hcCCEEEECCCCCHHHHHHHHCCCCEEEECC
Confidence 344 456789999998866533 34799998875321111 1 2378999999998754333345689998643
No 467
>PRK12824 acetoacetyl-CoA reductase; Provisional
Probab=69.08 E-value=44 Score=28.05 Aligned_cols=76 Identities=18% Similarity=0.091 Sum_probs=45.2
Q ss_pred EEEEEcccCChHHHHHHHHhC-CCCEEEEEeCChH-HHHHHHHHh-hcCCCeEEEEcCCCCchhhc-------ccCCCcc
Q 024665 146 RVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHR-SGRDLVNMA-KKRTNVIPIIEDARHPAKYR-------MLVGMVD 215 (264)
Q Consensus 146 ~VLDlG~G~G~~s~~la~~~~-~~g~V~avD~s~~-~~~~l~~~a-~~~~nV~~i~~D~~~~~~~~-------~~~~~fD 215 (264)
+||=.| +++.+..++++.+- ...+|+.++.++. ..+++.... ....++.++..|+.+..... .....+|
T Consensus 4 ~vlItG-~s~~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~id 82 (245)
T PRK12824 4 IALVTG-AKRGIGSAIARELLNDGYRVIATYFSGNDCAKDWFEEYGFTEDQVRLKELDVTDTEECAEALAEIEEEEGPVD 82 (245)
T ss_pred EEEEeC-CCchHHHHHHHHHHHcCCEEEEEeCCcHHHHHHHHHHhhccCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCC
Confidence 566666 46677777766553 2358999988742 222222211 12236899999999854211 1124689
Q ss_pred EEEEcCC
Q 024665 216 VIFSDVA 222 (264)
Q Consensus 216 ~V~~d~p 222 (264)
+|+.+..
T Consensus 83 ~vi~~ag 89 (245)
T PRK12824 83 ILVNNAG 89 (245)
T ss_pred EEEECCC
Confidence 9998764
No 468
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=68.86 E-value=73 Score=27.15 Aligned_cols=76 Identities=17% Similarity=0.165 Sum_probs=47.3
Q ss_pred CCEEEEEcccCChHHHHHHHHhC-CCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcc-------cCCCcc
Q 024665 144 GARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRM-------LVGMVD 215 (264)
Q Consensus 144 g~~VLDlG~G~G~~s~~la~~~~-~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~-------~~~~fD 215 (264)
+.+||=.| +++.+..+++..+- ...+|+.++.+....+++.+. ...+++++..|+.+...... ..+.+|
T Consensus 6 ~~~vlItG-as~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id 82 (257)
T PRK07067 6 GKVALLTG-AASGIGEAVAERYLAEGARVVIADIKPARARLAALE--IGPAAIAVSLDVTRQDSIDRIVAAAVERFGGID 82 (257)
T ss_pred CCEEEEeC-CCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHH--hCCceEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence 45677677 45566666665543 334899999986544333322 23468899999988653211 124689
Q ss_pred EEEEcCC
Q 024665 216 VIFSDVA 222 (264)
Q Consensus 216 ~V~~d~p 222 (264)
+++.+..
T Consensus 83 ~li~~ag 89 (257)
T PRK07067 83 ILFNNAA 89 (257)
T ss_pred EEEECCC
Confidence 9988754
No 469
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=68.80 E-value=26 Score=30.13 Aligned_cols=75 Identities=13% Similarity=0.097 Sum_probs=44.0
Q ss_pred CCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCc-hhhcccC-CCccEEEEc
Q 024665 144 GARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHP-AKYRMLV-GMVDVIFSD 220 (264)
Q Consensus 144 g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~-~~~~~~~-~~fD~V~~d 220 (264)
..+||=+|| +|.+...++..+ ....+|+++..++..... ......++++++.|+.+. ....... ..+|+||+.
T Consensus 17 ~~~ilItGa-sG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~---~~~~~~~~~~~~~Dl~d~~~~l~~~~~~~~d~vi~~ 92 (251)
T PLN00141 17 TKTVFVAGA-TGRTGKRIVEQLLAKGFAVKAGVRDVDKAKT---SLPQDPSLQIVRADVTEGSDKLVEAIGDDSDAVICA 92 (251)
T ss_pred CCeEEEECC-CcHHHHHHHHHHHhCCCEEEEEecCHHHHHH---hcccCCceEEEEeeCCCCHHHHHHHhhcCCCEEEEC
Confidence 457877776 455555555443 333578888766533211 111123689999999873 3221222 368999987
Q ss_pred CC
Q 024665 221 VA 222 (264)
Q Consensus 221 ~p 222 (264)
.+
T Consensus 93 ~g 94 (251)
T PLN00141 93 TG 94 (251)
T ss_pred CC
Confidence 65
No 470
>PRK06057 short chain dehydrogenase; Provisional
Probab=68.63 E-value=23 Score=30.35 Aligned_cols=75 Identities=15% Similarity=0.211 Sum_probs=45.2
Q ss_pred CCCEEEEEcccCChHHHHHHHHhC-CCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhccc-------CCCc
Q 024665 143 PGARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRML-------VGMV 214 (264)
Q Consensus 143 ~g~~VLDlG~G~G~~s~~la~~~~-~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~-------~~~f 214 (264)
++.+||=.|+.. .+...+++.+. ...+|+.++.++...++..+.. ..+++..|+.+....... .+.+
T Consensus 6 ~~~~vlItGasg-gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~----~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 80 (255)
T PRK06057 6 AGRVAVITGGGS-GIGLATARRLAAEGATVVVGDIDPEAGKAAADEV----GGLFVPTDVTDEDAVNALFDTAAETYGSV 80 (255)
T ss_pred CCCEEEEECCCc-hHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHc----CCcEEEeeCCCHHHHHHHHHHHHHHcCCC
Confidence 467899999854 55665555543 3458999998864332222211 225778898876432111 1468
Q ss_pred cEEEEcCC
Q 024665 215 DVIFSDVA 222 (264)
Q Consensus 215 D~V~~d~p 222 (264)
|+|+.++.
T Consensus 81 d~vi~~ag 88 (255)
T PRK06057 81 DIAFNNAG 88 (255)
T ss_pred CEEEECCC
Confidence 99988754
No 471
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=68.61 E-value=21 Score=32.39 Aligned_cols=70 Identities=17% Similarity=0.157 Sum_probs=43.5
Q ss_pred EEEEEcccCChHHHHHHHHhCC--CCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCC-CchhhcccCCCccEEEEc
Q 024665 146 RVLYLGAASGTTVSHVSDIVGP--NGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDAR-HPAKYRMLVGMVDVIFSD 220 (264)
Q Consensus 146 ~VLDlG~G~G~~s~~la~~~~~--~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~-~~~~~~~~~~~fD~V~~d 220 (264)
+|| |--++|.+..+++..+-. .-+|+++|.+..... .. .....++++..|++ +..........+|+||.-
T Consensus 3 ~il-VtGatGfiGs~l~~~L~~~~~~~V~~~~r~~~~~~---~~-~~~~~~~~~~~Dl~~~~~~~~~~~~~~d~ViH~ 75 (347)
T PRK11908 3 KVL-ILGVNGFIGHHLSKRILETTDWEVYGMDMQTDRLG---DL-VNHPRMHFFEGDITINKEWIEYHVKKCDVILPL 75 (347)
T ss_pred EEE-EECCCcHHHHHHHHHHHhCCCCeEEEEeCcHHHHH---Hh-ccCCCeEEEeCCCCCCHHHHHHHHcCCCEEEEC
Confidence 455 444689999999887642 248999998753211 11 11236899999997 332211233468998853
No 472
>PRK06196 oxidoreductase; Provisional
Probab=68.53 E-value=33 Score=30.65 Aligned_cols=76 Identities=11% Similarity=0.100 Sum_probs=48.0
Q ss_pred CCCEEEEEcccCChHHHHHHHHhC-CCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcc-------cCCCc
Q 024665 143 PGARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRM-------LVGMV 214 (264)
Q Consensus 143 ~g~~VLDlG~G~G~~s~~la~~~~-~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~-------~~~~f 214 (264)
.+.+||=.|+. |.+..++++.+- ...+|+.++.++...+++.+.. .++.++..|+.+...... ....+
T Consensus 25 ~~k~vlITGas-ggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~l---~~v~~~~~Dl~d~~~v~~~~~~~~~~~~~i 100 (315)
T PRK06196 25 SGKTAIVTGGY-SGLGLETTRALAQAGAHVIVPARRPDVAREALAGI---DGVEVVMLDLADLESVRAFAERFLDSGRRI 100 (315)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---hhCeEEEccCCCHHHHHHHHHHHHhcCCCC
Confidence 35678888865 556666665543 3348999998865443333222 247889999998653211 12468
Q ss_pred cEEEEcCC
Q 024665 215 DVIFSDVA 222 (264)
Q Consensus 215 D~V~~d~p 222 (264)
|+|+.++.
T Consensus 101 D~li~nAg 108 (315)
T PRK06196 101 DILINNAG 108 (315)
T ss_pred CEEEECCC
Confidence 99998875
No 473
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=68.40 E-value=12 Score=35.12 Aligned_cols=36 Identities=22% Similarity=0.249 Sum_probs=27.6
Q ss_pred CCCCCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCCh
Q 024665 140 WIKPGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSH 178 (264)
Q Consensus 140 ~l~~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~ 178 (264)
.+.|+++||=|.++--.....|+. ...+|+|||+|+
T Consensus 32 ~i~~~d~vl~ItSaG~N~L~yL~~---~P~~I~aVDlNp 67 (380)
T PF11899_consen 32 NIGPDDRVLTITSAGCNALDYLLA---GPKRIHAVDLNP 67 (380)
T ss_pred CCCCCCeEEEEccCCchHHHHHhc---CCceEEEEeCCH
Confidence 489999999998776665555543 345999999995
No 474
>PRK06197 short chain dehydrogenase; Provisional
Probab=68.34 E-value=29 Score=30.77 Aligned_cols=79 Identities=13% Similarity=0.075 Sum_probs=47.7
Q ss_pred CCCEEEEEcccCChHHHHHHHHhC-CCCEEEEEeCChHHHHHHHHHhh-c--CCCeEEEEcCCCCchhhcc-------cC
Q 024665 143 PGARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAK-K--RTNVIPIIEDARHPAKYRM-------LV 211 (264)
Q Consensus 143 ~g~~VLDlG~G~G~~s~~la~~~~-~~g~V~avD~s~~~~~~l~~~a~-~--~~nV~~i~~D~~~~~~~~~-------~~ 211 (264)
.+.+||=.|+. +.+..++++.+- ...+|+.+..++...++..+... . ..+++++..|+.+...... ..
T Consensus 15 ~~k~vlItGas-~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~ 93 (306)
T PRK06197 15 SGRVAVVTGAN-TGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALRAAY 93 (306)
T ss_pred CCCEEEEcCCC-CcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHhhC
Confidence 45678877764 555666665443 33478888888544333322221 1 2368899999988653211 12
Q ss_pred CCccEEEEcCC
Q 024665 212 GMVDVIFSDVA 222 (264)
Q Consensus 212 ~~fD~V~~d~p 222 (264)
..+|+|+.++.
T Consensus 94 ~~iD~li~nAg 104 (306)
T PRK06197 94 PRIDLLINNAG 104 (306)
T ss_pred CCCCEEEECCc
Confidence 46899998875
No 475
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=68.25 E-value=8.6 Score=28.60 Aligned_cols=52 Identities=10% Similarity=0.047 Sum_probs=32.5
Q ss_pred EEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEcC
Q 024665 149 YLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDV 221 (264)
Q Consensus 149 DlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~ 221 (264)
=+.||+|..|+.+++.+. +.++.. ..++++.+.++.+... ....+|+|++-|
T Consensus 3 l~~Cg~G~sTS~~~~ki~----------------~~~~~~--~~~~~v~~~~~~~~~~---~~~~~Diil~~P 54 (96)
T cd05564 3 LLVCSAGMSTSILVKKMK----------------KAAEKR--GIDAEIEAVPESELEE---YIDDADVVLLGP 54 (96)
T ss_pred EEEcCCCchHHHHHHHHH----------------HHHHHC--CCceEEEEecHHHHHH---hcCCCCEEEECh
Confidence 378999999998877642 222221 2246777777665442 235789988754
No 476
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=68.10 E-value=3.6 Score=36.29 Aligned_cols=72 Identities=11% Similarity=-0.016 Sum_probs=36.6
Q ss_pred EEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhc-ccCCCccEEEEcCC
Q 024665 148 LYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYR-MLVGMVDVIFSDVA 222 (264)
Q Consensus 148 LDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~-~~~~~fD~V~~d~p 222 (264)
|....||=.++.++.+. .-+.+.+|+.+.-.+.+.+......+|++.+.|..+..... ...+.==+|+.|||
T Consensus 62 l~~YPGSP~ia~~llR~---qDrl~l~ELHp~d~~~L~~~~~~~~~v~v~~~DG~~~l~allPP~~rRglVLIDPp 134 (245)
T PF04378_consen 62 LRFYPGSPAIAARLLRE---QDRLVLFELHPQDFEALKKNFRRDRRVRVHHRDGYEGLKALLPPPERRGLVLIDPP 134 (245)
T ss_dssp --EEE-HHHHHHHHS-T---TSEEEEE--SHHHHHHHTTS--TTS-EEEE-S-HHHHHHHH-S-TTS-EEEEE---
T ss_pred cCcCCCCHHHHHHhCCc---cceEEEEecCchHHHHHHHHhccCCccEEEeCchhhhhhhhCCCCCCCeEEEECCC
Confidence 77888888888777654 55899999997655444333333348999999987643210 01123459999999
No 477
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=68.05 E-value=69 Score=27.37 Aligned_cols=77 Identities=8% Similarity=0.155 Sum_probs=45.1
Q ss_pred CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHH-HhhcCCCeEEEEcCCCCchhhcc-------cCCC
Q 024665 143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVN-MAKKRTNVIPIIEDARHPAKYRM-------LVGM 213 (264)
Q Consensus 143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~-~a~~~~nV~~i~~D~~~~~~~~~-------~~~~ 213 (264)
.+..+|=.|+.. .+...+++.+ ....+|++++.++.. +..+ ......++.+++.|+.+...... ..+.
T Consensus 9 ~~k~~lItG~~~-gIG~a~a~~l~~~G~~vv~~~~~~~~--~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 85 (253)
T PRK08993 9 EGKVAVVTGCDT-GLGQGMALGLAEAGCDIVGINIVEPT--ETIEQVTALGRRFLSLTADLRKIDGIPALLERAVAEFGH 85 (253)
T ss_pred CCCEEEEECCCc-hHHHHHHHHHHHCCCEEEEecCcchH--HHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence 356788888755 5555555544 334578888876321 1112 12223468889999987542211 1246
Q ss_pred ccEEEEcCC
Q 024665 214 VDVIFSDVA 222 (264)
Q Consensus 214 fD~V~~d~p 222 (264)
+|+++.++.
T Consensus 86 ~D~li~~Ag 94 (253)
T PRK08993 86 IDILVNNAG 94 (253)
T ss_pred CCEEEECCC
Confidence 899998765
No 478
>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional
Probab=68.01 E-value=25 Score=30.50 Aligned_cols=80 Identities=10% Similarity=0.088 Sum_probs=46.2
Q ss_pred CCCEEEEEcc-cCChHHHHHHHHhCC-CCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhc-------ccCCC
Q 024665 143 PGARVLYLGA-ASGTTVSHVSDIVGP-NGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYR-------MLVGM 213 (264)
Q Consensus 143 ~g~~VLDlG~-G~G~~s~~la~~~~~-~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~-------~~~~~ 213 (264)
.+.+||=.|+ +++.+...+|+.+-. ..+|+.++...+..+.+.+.........++..|+.+..... ...+.
T Consensus 5 ~~k~vlItGas~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 84 (260)
T PRK06997 5 AGKRILITGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEFGSDLVFPCDVASDEQIDALFASLGQHWDG 84 (260)
T ss_pred CCcEEEEeCCCCCCcHHHHHHHHHHHCCCeEEEEccchHHHHHHHHHHHhcCCcceeeccCCCHHHHHHHHHHHHHHhCC
Confidence 4578998897 467777776655532 34777776543222222222222223456888998865321 11257
Q ss_pred ccEEEEcCC
Q 024665 214 VDVIFSDVA 222 (264)
Q Consensus 214 fD~V~~d~p 222 (264)
+|+++.++.
T Consensus 85 iD~lvnnAG 93 (260)
T PRK06997 85 LDGLVHSIG 93 (260)
T ss_pred CcEEEEccc
Confidence 999998864
No 479
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=67.87 E-value=40 Score=27.93 Aligned_cols=79 Identities=15% Similarity=0.134 Sum_probs=38.0
Q ss_pred CCCEEEEEcccCChHHHHHHHHhC-CCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEcC
Q 024665 143 PGARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDV 221 (264)
Q Consensus 143 ~g~~VLDlG~G~G~~s~~la~~~~-~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~ 221 (264)
.+.+||=+|+. |.....++..+- ...+|+.++.+..-++++.+......++.+...|..+..........+|+|++-.
T Consensus 27 ~~~~vlVlGgt-G~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi~at 105 (194)
T cd01078 27 KGKTAVVLGGT-GPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVFAAG 105 (194)
T ss_pred CCCEEEEECCC-CHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEEECC
Confidence 45788877753 444444433322 2348888888754444443322212233344444443321111223566666654
Q ss_pred C
Q 024665 222 A 222 (264)
Q Consensus 222 p 222 (264)
+
T Consensus 106 ~ 106 (194)
T cd01078 106 A 106 (194)
T ss_pred C
Confidence 4
No 480
>PRK06484 short chain dehydrogenase; Validated
Probab=67.84 E-value=44 Score=32.12 Aligned_cols=78 Identities=15% Similarity=0.207 Sum_probs=48.4
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhC-CCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcc-------cCCC
Q 024665 142 KPGARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRM-------LVGM 213 (264)
Q Consensus 142 ~~g~~VLDlG~G~G~~s~~la~~~~-~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~-------~~~~ 213 (264)
..+.++|=.|+..| +...+++.+- ...+|+.++.++..++++.+.. ..++..+..|+.+...... ..+.
T Consensus 267 ~~~k~~lItGas~g-IG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 343 (520)
T PRK06484 267 ESPRVVAITGGARG-IGRAVADRFAAAGDRLLIIDRDAEGAKKLAEAL--GDEHLSVQADITDEAAVESAFAQIQARWGR 343 (520)
T ss_pred cCCCEEEEECCCcH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh--CCceeEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 35677887777655 4555554432 3358999999865544444322 2356778999988653211 1246
Q ss_pred ccEEEEcCC
Q 024665 214 VDVIFSDVA 222 (264)
Q Consensus 214 fD~V~~d~p 222 (264)
+|+++.++.
T Consensus 344 id~li~nAg 352 (520)
T PRK06484 344 LDVLVNNAG 352 (520)
T ss_pred CCEEEECCC
Confidence 899998765
No 481
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=67.63 E-value=22 Score=32.34 Aligned_cols=78 Identities=22% Similarity=0.282 Sum_probs=47.1
Q ss_pred CCEEEEEcccCChHHHHHHHHhC-CCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCC--CccEEEEc
Q 024665 144 GARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVG--MVDVIFSD 220 (264)
Q Consensus 144 g~~VLDlG~G~G~~s~~la~~~~-~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~--~fD~V~~d 220 (264)
+.+||=.| |+|.+..++++.+- ...+|++++.++..............+++++..|+++......... .+|+|+..
T Consensus 4 ~k~ilItG-atG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~vih~ 82 (349)
T TIGR02622 4 GKKVLVTG-HTGFKGSWLSLWLLELGAEVYGYSLDPPTSPNLFELLNLAKKIEDHFGDIRDAAKLRKAIAEFKPEIVFHL 82 (349)
T ss_pred CCEEEEEC-CCChhHHHHHHHHHHCCCEEEEEeCCCccchhHHHHHhhcCCceEEEccCCCHHHHHHHHhhcCCCEEEEC
Confidence 46777766 56777777776653 3347999997743221211111122368889999988654322222 47999876
Q ss_pred CC
Q 024665 221 VA 222 (264)
Q Consensus 221 ~p 222 (264)
..
T Consensus 83 A~ 84 (349)
T TIGR02622 83 AA 84 (349)
T ss_pred Cc
Confidence 65
No 482
>PRK05693 short chain dehydrogenase; Provisional
Probab=67.48 E-value=51 Score=28.55 Aligned_cols=71 Identities=18% Similarity=0.166 Sum_probs=43.4
Q ss_pred EEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcc-------cCCCccEE
Q 024665 146 RVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRM-------LVGMVDVI 217 (264)
Q Consensus 146 ~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~-------~~~~fD~V 217 (264)
+||=.|| +|.+...+++.+ ....+|++++.++...+++. ..+++++..|+.+...... ..+.+|+|
T Consensus 3 ~vlItGa-sggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~-----~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~v 76 (274)
T PRK05693 3 VVLITGC-SSGIGRALADAFKAAGYEVWATARKAEDVEALA-----AAGFTAVQLDVNDGAALARLAEELEAEHGGLDVL 76 (274)
T ss_pred EEEEecC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-----HCCCeEEEeeCCCHHHHHHHHHHHHHhcCCCCEE
Confidence 5666665 556666665544 23458999998864432221 1257788899887543211 12468999
Q ss_pred EEcCC
Q 024665 218 FSDVA 222 (264)
Q Consensus 218 ~~d~p 222 (264)
+.+..
T Consensus 77 i~~ag 81 (274)
T PRK05693 77 INNAG 81 (274)
T ss_pred EECCC
Confidence 98765
No 483
>PRK06179 short chain dehydrogenase; Provisional
Probab=67.38 E-value=43 Score=28.83 Aligned_cols=71 Identities=15% Similarity=0.140 Sum_probs=45.9
Q ss_pred CCEEEEEcccCChHHHHHHHHhC-CCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcc-------cCCCcc
Q 024665 144 GARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRM-------LVGMVD 215 (264)
Q Consensus 144 g~~VLDlG~G~G~~s~~la~~~~-~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~-------~~~~fD 215 (264)
+.+||=.|+ +|.+..++++.+- ...+|++++.++... ....++++++.|+.+...... ..+.+|
T Consensus 4 ~~~vlVtGa-sg~iG~~~a~~l~~~g~~V~~~~r~~~~~-------~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~~d 75 (270)
T PRK06179 4 SKVALVTGA-SSGIGRATAEKLARAGYRVFGTSRNPARA-------APIPGVELLELDVTDDASVQAAVDEVIARAGRID 75 (270)
T ss_pred CCEEEEecC-CCHHHHHHHHHHHHCCCEEEEEeCChhhc-------cccCCCeeEEeecCCHHHHHHHHHHHHHhCCCCC
Confidence 356887885 5666777765543 345799999885321 112368899999988653211 124689
Q ss_pred EEEEcCC
Q 024665 216 VIFSDVA 222 (264)
Q Consensus 216 ~V~~d~p 222 (264)
+|+.+..
T Consensus 76 ~li~~ag 82 (270)
T PRK06179 76 VLVNNAG 82 (270)
T ss_pred EEEECCC
Confidence 9998865
No 484
>PRK07985 oxidoreductase; Provisional
Probab=67.17 E-value=47 Score=29.47 Aligned_cols=79 Identities=13% Similarity=0.115 Sum_probs=44.4
Q ss_pred CCCEEEEEcccCChHHHHHHHHhC-CCCEEEEEeCCh--HHHHHHHHHhhc-CCCeEEEEcCCCCchhhc-------ccC
Q 024665 143 PGARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSH--RSGRDLVNMAKK-RTNVIPIIEDARHPAKYR-------MLV 211 (264)
Q Consensus 143 ~g~~VLDlG~G~G~~s~~la~~~~-~~g~V~avD~s~--~~~~~l~~~a~~-~~nV~~i~~D~~~~~~~~-------~~~ 211 (264)
.+.+||-.|+..| +..++++.+- ...+|+.++.+. +..+++.+.... ..++.++..|+.+..... ...
T Consensus 48 ~~k~vlITGas~g-IG~aia~~L~~~G~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 126 (294)
T PRK07985 48 KDRKALVTGGDSG-IGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEECGRKAVLLPGDLSDEKFARSLVHEAHKAL 126 (294)
T ss_pred CCCEEEEECCCCc-HHHHHHHHHHHCCCEEEEecCCcchhhHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 4568998887544 4444444332 345788776542 222233222221 236888999998864211 112
Q ss_pred CCccEEEEcCC
Q 024665 212 GMVDVIFSDVA 222 (264)
Q Consensus 212 ~~fD~V~~d~p 222 (264)
+.+|+++.+..
T Consensus 127 g~id~lv~~Ag 137 (294)
T PRK07985 127 GGLDIMALVAG 137 (294)
T ss_pred CCCCEEEECCC
Confidence 46899987754
No 485
>PRK12367 short chain dehydrogenase; Provisional
Probab=67.15 E-value=83 Score=27.17 Aligned_cols=75 Identities=12% Similarity=0.081 Sum_probs=44.4
Q ss_pred CCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCccEEEEcCC
Q 024665 144 GARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVA 222 (264)
Q Consensus 144 g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~fD~V~~d~p 222 (264)
+.+||-.|+++|.=......+.....+|+.++.++.. .+ +..... ...++..|+.+........+.+|+++.+..
T Consensus 14 ~k~~lITGas~gIG~ala~~l~~~G~~Vi~~~r~~~~--~~-~~~~~~-~~~~~~~D~~~~~~~~~~~~~iDilVnnAG 88 (245)
T PRK12367 14 GKRIGITGASGALGKALTKAFRAKGAKVIGLTHSKIN--NS-ESNDES-PNEWIKWECGKEESLDKQLASLDVLILNHG 88 (245)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEECCchh--hh-hhhccC-CCeEEEeeCCCHHHHHHhcCCCCEEEECCc
Confidence 5688888877665333333333445689999887521 11 111111 235678898876543333467999998875
No 486
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=67.04 E-value=10 Score=33.41 Aligned_cols=69 Identities=19% Similarity=0.135 Sum_probs=46.9
Q ss_pred EEEEcccCChHHHHHHHHhCCC-CEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCCc-cEEEEcCC
Q 024665 147 VLYLGAASGTTVSHVSDIVGPN-GVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMV-DVIFSDVA 222 (264)
Q Consensus 147 VLDlG~G~G~~s~~la~~~~~~-g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~f-D~V~~d~p 222 (264)
||=.|+ +|.+..+|++.+... -+|+++|.++.....+. .++.++..|.++..........+ |+|+....
T Consensus 3 ILVtG~-tGfiG~~l~~~L~~~g~~V~~~~r~~~~~~~~~------~~~~~~~~d~~~~~~~~~~~~~~~d~vih~aa 73 (314)
T COG0451 3 ILVTGG-AGFIGSHLVERLLAAGHDVRGLDRLRDGLDPLL------SGVEFVVLDLTDRDLVDELAKGVPDAVIHLAA 73 (314)
T ss_pred EEEEcC-cccHHHHHHHHHHhCCCeEEEEeCCCccccccc------cccceeeecccchHHHHHHHhcCCCEEEEccc
Confidence 777777 999999999887643 48999998753211111 57888888988754322222344 99987766
No 487
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=66.72 E-value=28 Score=29.95 Aligned_cols=77 Identities=21% Similarity=0.253 Sum_probs=47.3
Q ss_pred CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcc-------cCCCc
Q 024665 143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRM-------LVGMV 214 (264)
Q Consensus 143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~-------~~~~f 214 (264)
++.+||=.|+..| +...+++.+ ....+|+.++.++..++++.+. ...++.+++.|+.+...... ..+.+
T Consensus 4 ~~k~vlItGas~g-IG~~ia~~l~~~G~~V~~~~r~~~~~~~l~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~i 80 (262)
T TIGR03325 4 KGEVVLVTGGASG-LGRAIVDRFVAEGARVAVLDKSAAGLQELEAA--HGDAVVGVEGDVRSLDDHKEAVARCVAAFGKI 80 (262)
T ss_pred CCcEEEEECCCCh-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhh--cCCceEEEEeccCCHHHHHHHHHHHHHHhCCC
Confidence 3567888887554 555555443 3345899999886554443321 12368889999987542211 12467
Q ss_pred cEEEEcCC
Q 024665 215 DVIFSDVA 222 (264)
Q Consensus 215 D~V~~d~p 222 (264)
|+++.++.
T Consensus 81 d~li~~Ag 88 (262)
T TIGR03325 81 DCLIPNAG 88 (262)
T ss_pred CEEEECCC
Confidence 99998764
No 488
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=66.63 E-value=82 Score=26.88 Aligned_cols=79 Identities=15% Similarity=0.179 Sum_probs=49.9
Q ss_pred CCCEEEEEcccCChHHHHHHHHhC-CCCEEEEEeCChHHHHHHHHHhh-cCCCeEEEEcCCCCchhhcc-------cCCC
Q 024665 143 PGARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAK-KRTNVIPIIEDARHPAKYRM-------LVGM 213 (264)
Q Consensus 143 ~g~~VLDlG~G~G~~s~~la~~~~-~~g~V~avD~s~~~~~~l~~~a~-~~~nV~~i~~D~~~~~~~~~-------~~~~ 213 (264)
++.+||=.|+ +|.+..++++.+- ...+|+.++.++.-.+.+.+... ...++.++..|+.+...... ....
T Consensus 11 ~~k~ilItGa-~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~Dl~d~~~i~~~~~~~~~~~~~ 89 (259)
T PRK08213 11 SGKTALVTGG-SRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALGIDALWIAADVADEADIERLAEETLERFGH 89 (259)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 4678888885 5666777766553 23479999988644333332222 22368889999998653211 1246
Q ss_pred ccEEEEcCC
Q 024665 214 VDVIFSDVA 222 (264)
Q Consensus 214 fD~V~~d~p 222 (264)
+|+|+.+..
T Consensus 90 id~vi~~ag 98 (259)
T PRK08213 90 VDILVNNAG 98 (259)
T ss_pred CCEEEECCC
Confidence 899998765
No 489
>PRK12744 short chain dehydrogenase; Provisional
Probab=66.57 E-value=69 Score=27.35 Aligned_cols=79 Identities=15% Similarity=0.225 Sum_probs=45.5
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCC-CEEEEEeCC----hHHHHHHHHHhh-cCCCeEEEEcCCCCchhhcc-------
Q 024665 143 PGARVLYLGAASGTTVSHVSDIVGPN-GVVYAVEFS----HRSGRDLVNMAK-KRTNVIPIIEDARHPAKYRM------- 209 (264)
Q Consensus 143 ~g~~VLDlG~G~G~~s~~la~~~~~~-g~V~avD~s----~~~~~~l~~~a~-~~~nV~~i~~D~~~~~~~~~------- 209 (264)
.+.+||=.|+ ++.+...+++.+-.. .+|+.++.+ ....+++.+... ...+++++..|+.+......
T Consensus 7 ~~k~vlItGa-~~gIG~~~a~~l~~~G~~vv~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 85 (257)
T PRK12744 7 KGKVVLIAGG-AKNLGGLIARDLAAQGAKAVAIHYNSAASKADAEETVAAVKAAGAKAVAFQADLTTAAAVEKLFDDAKA 85 (257)
T ss_pred CCcEEEEECC-CchHHHHHHHHHHHCCCcEEEEecCCccchHHHHHHHHHHHHhCCcEEEEecCcCCHHHHHHHHHHHHH
Confidence 3567888886 555666666655433 366666543 222222222222 22378899999988653211
Q ss_pred cCCCccEEEEcCC
Q 024665 210 LVGMVDVIFSDVA 222 (264)
Q Consensus 210 ~~~~fD~V~~d~p 222 (264)
..+.+|+|+.++.
T Consensus 86 ~~~~id~li~~ag 98 (257)
T PRK12744 86 AFGRPDIAINTVG 98 (257)
T ss_pred hhCCCCEEEECCc
Confidence 1246899998765
No 490
>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
Probab=66.44 E-value=52 Score=29.04 Aligned_cols=78 Identities=15% Similarity=0.188 Sum_probs=50.8
Q ss_pred CCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchh-------hcccCCCccE
Q 024665 144 GARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAK-------YRMLVGMVDV 216 (264)
Q Consensus 144 g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~-------~~~~~~~fD~ 216 (264)
++.||==|+.+|.=-...-.+.....+|+.+....+.++++...... ..+.++..|++|... .......+|+
T Consensus 6 ~kv~lITGASSGiG~A~A~~l~~~G~~vvl~aRR~drL~~la~~~~~-~~~~~~~~DVtD~~~~~~~i~~~~~~~g~iDi 84 (246)
T COG4221 6 GKVALITGASSGIGEATARALAEAGAKVVLAARREERLEALADEIGA-GAALALALDVTDRAAVEAAIEALPEEFGRIDI 84 (246)
T ss_pred CcEEEEecCcchHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHhhcc-CceEEEeeccCCHHHHHHHHHHHHHhhCcccE
Confidence 46677778888763222222223345899999997665555554433 478999999998743 1122357999
Q ss_pred EEEcCC
Q 024665 217 IFSDVA 222 (264)
Q Consensus 217 V~~d~p 222 (264)
++.|.-
T Consensus 85 LvNNAG 90 (246)
T COG4221 85 LVNNAG 90 (246)
T ss_pred EEecCC
Confidence 998865
No 491
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=66.09 E-value=55 Score=27.72 Aligned_cols=81 Identities=10% Similarity=0.036 Sum_probs=47.8
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhC-CCCEEEEEeCChHHHHHHHHHhhcC--CCeEEEEcCCCCc--hh-------hc
Q 024665 141 IKPGARVLYLGAASGTTVSHVSDIVG-PNGVVYAVEFSHRSGRDLVNMAKKR--TNVIPIIEDARHP--AK-------YR 208 (264)
Q Consensus 141 l~~g~~VLDlG~G~G~~s~~la~~~~-~~g~V~avD~s~~~~~~l~~~a~~~--~nV~~i~~D~~~~--~~-------~~ 208 (264)
+.++.+||=.|+ +|.+...+++.+- ...+|+.++.++....++.+..... .+++++..|+... .. ..
T Consensus 9 ~~~~k~vlItG~-~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 87 (247)
T PRK08945 9 LLKDRIILVTGA-GDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDLLTATPQNYQQLADTIE 87 (247)
T ss_pred ccCCCEEEEeCC-CchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhcCCCCceEEEecccCCCHHHHHHHHHHHH
Confidence 446778998886 5566665554443 2348999999865544443332221 2567777777532 10 11
Q ss_pred ccCCCccEEEEcCC
Q 024665 209 MLVGMVDVIFSDVA 222 (264)
Q Consensus 209 ~~~~~fD~V~~d~p 222 (264)
.....+|.|+.+..
T Consensus 88 ~~~~~id~vi~~Ag 101 (247)
T PRK08945 88 EQFGRLDGVLHNAG 101 (247)
T ss_pred HHhCCCCEEEECCc
Confidence 11246899998764
No 492
>PRK12747 short chain dehydrogenase; Provisional
Probab=65.82 E-value=83 Score=26.69 Aligned_cols=78 Identities=12% Similarity=0.111 Sum_probs=41.7
Q ss_pred CCEEEEEcccCChHHHHHHHHhCCC-CEEEEEeC-ChHHHHHHHHHhh-cCCCeEEEEcCCCCchhhc----c-------
Q 024665 144 GARVLYLGAASGTTVSHVSDIVGPN-GVVYAVEF-SHRSGRDLVNMAK-KRTNVIPIIEDARHPAKYR----M------- 209 (264)
Q Consensus 144 g~~VLDlG~G~G~~s~~la~~~~~~-g~V~avD~-s~~~~~~l~~~a~-~~~nV~~i~~D~~~~~~~~----~------- 209 (264)
+.++|=.|+++| +..++++.+-.. ..|+.++. ++...+++..... ....+.++..|+.+..... .
T Consensus 4 ~k~~lItGas~g-IG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 82 (252)
T PRK12747 4 GKVALVTGASRG-IGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQSNGGSAFSIGANLESLHGVEALYSSLDNELQN 82 (252)
T ss_pred CCEEEEeCCCCh-HHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHHHhcCCceEEEecccCCHHHHHHHHHHHHHHhhh
Confidence 567787886655 555555544333 45666543 3333323222222 2235778888887753210 0
Q ss_pred c--CCCccEEEEcCC
Q 024665 210 L--VGMVDVIFSDVA 222 (264)
Q Consensus 210 ~--~~~fD~V~~d~p 222 (264)
. ...+|+++.++.
T Consensus 83 ~~g~~~id~lv~~Ag 97 (252)
T PRK12747 83 RTGSTKFDILINNAG 97 (252)
T ss_pred hcCCCCCCEEEECCC
Confidence 0 126899998765
No 493
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=65.63 E-value=72 Score=32.28 Aligned_cols=79 Identities=10% Similarity=0.157 Sum_probs=48.2
Q ss_pred CCCEEEEEcccCChHHHHHHHHh-CCCCEEEEEeCChHHHHHHHHHhhc---CCCeEEEEcCCCCchhhccc-------C
Q 024665 143 PGARVLYLGAASGTTVSHVSDIV-GPNGVVYAVEFSHRSGRDLVNMAKK---RTNVIPIIEDARHPAKYRML-------V 211 (264)
Q Consensus 143 ~g~~VLDlG~G~G~~s~~la~~~-~~~g~V~avD~s~~~~~~l~~~a~~---~~nV~~i~~D~~~~~~~~~~-------~ 211 (264)
.+.+||=.|+. |.+...++..+ ....+|+.++.+....+.+.+.... ..++.+++.|+++....... .
T Consensus 413 ~gkvvLVTGas-ggIG~aiA~~La~~Ga~Vvi~~r~~~~~~~~~~~l~~~~~~~~~~~v~~Dvtd~~~v~~a~~~i~~~~ 491 (676)
T TIGR02632 413 ARRVAFVTGGA-GGIGRETARRLAAEGAHVVLADLNLEAAEAVAAEINGQFGAGRAVALKMDVTDEQAVKAAFADVALAY 491 (676)
T ss_pred CCCEEEEeCCC-cHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhhcCCCcEEEEECCCCCHHHHHHHHHHHHHhc
Confidence 35678877775 45555555443 3346899999996554443332221 12578899999886532111 2
Q ss_pred CCccEEEEcCC
Q 024665 212 GMVDVIFSDVA 222 (264)
Q Consensus 212 ~~fD~V~~d~p 222 (264)
+.+|+|+.+..
T Consensus 492 g~iDilV~nAG 502 (676)
T TIGR02632 492 GGVDIVVNNAG 502 (676)
T ss_pred CCCcEEEECCC
Confidence 36899998876
No 494
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=65.54 E-value=61 Score=27.42 Aligned_cols=101 Identities=15% Similarity=0.157 Sum_probs=0.0
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCC-------cc
Q 024665 143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGM-------VD 215 (264)
Q Consensus 143 ~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~-------fD 215 (264)
++.+||=.|+.++.=...+..+.....+|+.++.+. ......+++++..|+.+.......... +|
T Consensus 7 ~~k~vlItGas~~iG~~la~~l~~~G~~v~~~~~~~--------~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id 78 (252)
T PRK08220 7 SGKTVWVTGAAQGIGYAVALAFVEAGAKVIGFDQAF--------LTQEDYPFATFVLDVSDAAAVAQVCQRLLAETGPLD 78 (252)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecch--------hhhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCC
Q ss_pred EEEEcCC---------CchHHHHHHHHHhCCCcHHHHHHHHHHhh
Q 024665 216 VIFSDVA---------QPDQVCFLCLILFQPIVINNLQSVNNETK 251 (264)
Q Consensus 216 ~V~~d~p---------~~~~~~~~~~~~l~~~~~~~l~~~~~~Lk 251 (264)
+|+.+.. .+.......++.........++.+...++
T Consensus 79 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~ 123 (252)
T PRK08220 79 VLVNAAGILRMGATDSLSDEDWQQTFAVNAGGAFNLFRAVMPQFR 123 (252)
T ss_pred EEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHH
No 495
>PLN02650 dihydroflavonol-4-reductase
Probab=65.26 E-value=28 Score=31.62 Aligned_cols=82 Identities=11% Similarity=0.030 Sum_probs=0.0
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCC-EEEEEeCChHHHHHHHHHhhcCC---CeEEEEcCCCCchhhcccCCCccE
Q 024665 141 IKPGARVLYLGAASGTTVSHVSDIVGPNG-VVYAVEFSHRSGRDLVNMAKKRT---NVIPIIEDARHPAKYRMLVGMVDV 216 (264)
Q Consensus 141 l~~g~~VLDlG~G~G~~s~~la~~~~~~g-~V~avD~s~~~~~~l~~~a~~~~---nV~~i~~D~~~~~~~~~~~~~fD~ 216 (264)
+...++-+=+-.|+|.+..++++.+-..+ +|++++.++.....+........ +++++..|+++..........+|.
T Consensus 1 ~~~~~k~iLVTGatGfIGs~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~~~~~~~~~d~ 80 (351)
T PLN02650 1 MGSQKETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPANVKKVKHLLDLPGATTRLTLWKADLAVEGSFDDAIRGCTG 80 (351)
T ss_pred CCCCCCEEEEeCCcHHHHHHHHHHHHHCCCEEEEEEcCcchhHHHHHHHhccCCCCceEEEEecCCChhhHHHHHhCCCE
Q ss_pred EEEcCC
Q 024665 217 IFSDVA 222 (264)
Q Consensus 217 V~~d~p 222 (264)
|+.-..
T Consensus 81 ViH~A~ 86 (351)
T PLN02650 81 VFHVAT 86 (351)
T ss_pred EEEeCC
No 496
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=64.89 E-value=41 Score=29.14 Aligned_cols=79 Identities=15% Similarity=0.192 Sum_probs=0.0
Q ss_pred CCCEEEEEcccCC-hHHHHHHHHhCCCC-EEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccC-------CC
Q 024665 143 PGARVLYLGAASG-TTVSHVSDIVGPNG-VVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLV-------GM 213 (264)
Q Consensus 143 ~g~~VLDlG~G~G-~~s~~la~~~~~~g-~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~-------~~ 213 (264)
.+..+|=.|+++| .+...+|+.+-..+ +|+.++.++...+.+.+.+.......+++.|+.+......+. +.
T Consensus 7 ~~k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~~~~~~~~~~l~~~~g~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 86 (260)
T PRK06603 7 QGKKGLITGIANNMSISWAIAQLAKKHGAELWFTYQSEVLEKRVKPLAEEIGCNFVSELDVTNPKSISNLFDDIKEKWGS 86 (260)
T ss_pred CCcEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCchHHHHHHHHHHHhcCCceEEEccCCCHHHHHHHHHHHHHHcCC
Q ss_pred ccEEEEcC
Q 024665 214 VDVIFSDV 221 (264)
Q Consensus 214 fD~V~~d~ 221 (264)
+|+++.++
T Consensus 87 iDilVnna 94 (260)
T PRK06603 87 FDFLLHGM 94 (260)
T ss_pred ccEEEEcc
No 497
>PRK06482 short chain dehydrogenase; Provisional
Probab=64.89 E-value=75 Score=27.48 Aligned_cols=105 Identities=16% Similarity=0.070 Sum_probs=0.0
Q ss_pred CEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCCC-------ccEE
Q 024665 145 ARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGM-------VDVI 217 (264)
Q Consensus 145 ~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~~-------fD~V 217 (264)
.+||=.||..+.=...+..+.....+|++++.++..++++.+.... ++.+++.|+++.......... +|+|
T Consensus 3 k~vlVtGasg~IG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~v 80 (276)
T PRK06482 3 KTWFITGASSGFGRGMTERLLARGDRVAATVRRPDALDDLKARYGD--RLWVLQLDVTDSAAVRAVVDRAFAALGRIDVV 80 (276)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhccC--ceEEEEccCCCHHHHHHHHHHHHHHcCCCCEE
Q ss_pred EEcCC---------CchHHHHHHHHHhCCCcHHHHHHHHHHhh
Q 024665 218 FSDVA---------QPDQVCFLCLILFQPIVINNLQSVNNETK 251 (264)
Q Consensus 218 ~~d~p---------~~~~~~~~~~~~l~~~~~~~l~~~~~~Lk 251 (264)
+.+.. .++.......+.........++.++..++
T Consensus 81 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~ 123 (276)
T PRK06482 81 VSNAGYGLFGAAEELSDAQIRRQIDTNLIGSIQVIRAALPHLR 123 (276)
T ss_pred EECCCCCCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHH
No 498
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=64.34 E-value=13 Score=34.03 Aligned_cols=108 Identities=15% Similarity=0.112 Sum_probs=0.0
Q ss_pred EcccCChHHHHHHHHhCCCC-EEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhcccCC--CccEEEEcCC--Cc
Q 024665 150 LGAASGTTVSHVSDIVGPNG-VVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVG--MVDVIFSDVA--QP 224 (264)
Q Consensus 150 lG~G~G~~s~~la~~~~~~g-~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~~~--~fD~V~~d~p--~~ 224 (264)
+.-|.|++.+|....+-.++ +|+.+|.-...-++.+.... ++++++|++|-........ ++|.|+.-.. ..
T Consensus 5 VtGGAGYIGSHtv~~Ll~~G~~vvV~DNL~~g~~~~v~~~~----~~f~~gDi~D~~~L~~vf~~~~idaViHFAa~~~V 80 (329)
T COG1087 5 VTGGAGYIGSHTVRQLLKTGHEVVVLDNLSNGHKIALLKLQ----FKFYEGDLLDRALLTAVFEENKIDAVVHFAASISV 80 (329)
T ss_pred EecCcchhHHHHHHHHHHCCCeEEEEecCCCCCHHHhhhcc----CceEEeccccHHHHHHHHHhcCCCEEEECcccccc
Q ss_pred hHHHHHHHHHhCCCcHHHHHHHHHHhhcchhhhhhhh
Q 024665 225 DQVCFLCLILFQPIVINNLQSVNNETKGGIFEFLFSL 261 (264)
Q Consensus 225 ~~~~~~~~~~l~~~~~~~l~~~~~~Lk~g~f~~l~~~ 261 (264)
.+....-+.-..-.+...+.-+....+.+...|+||+
T Consensus 81 gESv~~Pl~Yy~NNv~gTl~Ll~am~~~gv~~~vFSS 117 (329)
T COG1087 81 GESVQNPLKYYDNNVVGTLNLIEAMLQTGVKKFIFSS 117 (329)
T ss_pred chhhhCHHHHHhhchHhHHHHHHHHHHhCCCEEEEec
No 499
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=64.29 E-value=45 Score=29.20 Aligned_cols=79 Identities=15% Similarity=0.157 Sum_probs=0.0
Q ss_pred CCCEEEEEccc-CChHHHHHHHHhCCCC-EEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhccc-------CCC
Q 024665 143 PGARVLYLGAA-SGTTVSHVSDIVGPNG-VVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRML-------VGM 213 (264)
Q Consensus 143 ~g~~VLDlG~G-~G~~s~~la~~~~~~g-~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~-------~~~ 213 (264)
.+.++|=.|++ ++.+...+|+.+-..+ +|+.+..+++..+.+.+.+.....+.+++.|+.+......+ .+.
T Consensus 9 ~~k~~lItGas~~~GIG~aia~~la~~G~~V~l~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~ 88 (272)
T PRK08159 9 AGKRGLILGVANNRSIAWGIAKACRAAGAELAFTYQGDALKKRVEPLAAELGAFVAGHCDVTDEASIDAVFETLEKKWGK 88 (272)
T ss_pred cCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCchHHHHHHHHHHHhcCCceEEecCCCCHHHHHHHHHHHHHhcCC
Q ss_pred ccEEEEcC
Q 024665 214 VDVIFSDV 221 (264)
Q Consensus 214 fD~V~~d~ 221 (264)
+|+++.++
T Consensus 89 iD~lv~nA 96 (272)
T PRK08159 89 LDFVVHAI 96 (272)
T ss_pred CcEEEECC
No 500
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=64.27 E-value=85 Score=26.26 Aligned_cols=117 Identities=13% Similarity=0.064 Sum_probs=0.0
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCEEEEEeCChHHHHHHHHHhhcCCCeEEEEcCCCCchhhccc-------CCCcc
Q 024665 143 PGARVLYLGAASGTTVSHVSDIVGPNGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRML-------VGMVD 215 (264)
Q Consensus 143 ~g~~VLDlG~G~G~~s~~la~~~~~~g~V~avD~s~~~~~~l~~~a~~~~nV~~i~~D~~~~~~~~~~-------~~~fD 215 (264)
++.+||=.|+..+.=...+..+......|+..+.+++..+++.+.. ..+++++..|+.+....... ..++|
T Consensus 5 ~~~~vlItGa~g~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id 82 (245)
T PRK12936 5 SGRKALVTGASGGIGEEIARLLHAQGAIVGLHGTRVEKLEALAAEL--GERVKIFPANLSDRDEVKALGQKAEADLEGVD 82 (245)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHh--CCceEEEEccCCCHHHHHHHHHHHHHHcCCCC
Q ss_pred EEEEcCC---------CchHHHHHHHHHhCCCcHHHHHHHHHHhh---cchhhhhhhh
Q 024665 216 VIFSDVA---------QPDQVCFLCLILFQPIVINNLQSVNNETK---GGIFEFLFSL 261 (264)
Q Consensus 216 ~V~~d~p---------~~~~~~~~~~~~l~~~~~~~l~~~~~~Lk---~g~f~~l~~~ 261 (264)
.|+.++. .++......++.........++.+.+.++ .+.+-++.|.
T Consensus 83 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~ 140 (245)
T PRK12936 83 ILVNNAGITKDGLFVRMSDEDWDSVLEVNLTATFRLTRELTHPMMRRRYGRIINITSV 140 (245)
T ss_pred EEEECCCCCCCCccccCCHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCEEEEECCH
Done!