BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024666
(264 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2JK4|A Chain A, Structure Of The Human Voltage-Dependent Anion Channel
Length = 294
Score = 50.4 bits (119), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 90/213 (42%), Gaps = 11/213 (5%)
Query: 58 KVDTNSNLFTTITV-DEPAPGLKSIF-SFIVPD--QRSGKVELQYQHEYAGISTGIGFT- 112
K +T++ L T ITV D+ A GLK F S P+ +++ K++ Y+ E+ + + F
Sbjct: 77 KWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKREHINLGCDMDFDI 136
Query: 113 ANPIXXXXXXXXXXXXALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLTLNDKGDTLNA 172
A P G ++F+TA T+ N + Y + +ND G
Sbjct: 137 AGPSIRGALVLGYEGWLAGYQMNFETAKSRVTQSNFAVGYKTDEFQLHTNVND-GTEFGG 195
Query: 173 SYYHIVSPLTNTAVGAELTHSFSSNENT-LTIGTQHALDPLTSVKARVNNYGRASALIQH 231
S Y V+ TAV T + N NT I ++ +DP A+VNN
Sbjct: 196 SIYQKVNKKLETAVNLAWT---AGNSNTRFGIAAKYQIDPDACFSAKVNNSSLIGLGYTQ 252
Query: 232 EWRPKSLFTISGEVDTRAIEKSA-KIGLALALK 263
+P T+S +D + + K+GL L +
Sbjct: 253 TLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQ 285
>pdb|2K4T|A Chain A, Solution Structure Of Human Vdac-1 In Ldao Micelles
Length = 291
Score = 50.4 bits (119), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 90/213 (42%), Gaps = 11/213 (5%)
Query: 58 KVDTNSNLFTTITV-DEPAPGLKSIF-SFIVPD--QRSGKVELQYQHEYAGISTGIGFT- 112
K +T++ L T ITV D+ A GLK F S P+ +++ K++ Y+ E+ + + F
Sbjct: 74 KWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKREHINLGCDMDFDI 133
Query: 113 ANPIXXXXXXXXXXXXALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLTLNDKGDTLNA 172
A P G ++F+TA T+ N + Y + +ND G
Sbjct: 134 AGPSIRGALVLGYEGWLAGYQMNFETAKSRVTQSNFAVGYKTDEFQLHTNVND-GTEFGG 192
Query: 173 SYYHIVSPLTNTAVGAELTHSFSSNENT-LTIGTQHALDPLTSVKARVNNYGRASALIQH 231
S Y V+ TAV T + N NT I ++ +DP A+VNN
Sbjct: 193 SIYQKVNKKLETAVNLAWT---AGNSNTRFGIAAKYQIDPDACFSAKVNNSSLIGLGYTQ 249
Query: 232 EWRPKSLFTISGEVDTRAIEKSA-KIGLALALK 263
+P T+S +D + + K+GL L +
Sbjct: 250 TLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQ 282
>pdb|3EMN|X Chain X, The Crystal Structure Of Mouse Vdac1 At 2.3 A Resolution
Length = 295
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 90/213 (42%), Gaps = 11/213 (5%)
Query: 58 KVDTNSNLFTTITV-DEPAPGLKSIF-SFIVPD--QRSGKVELQYQHEYAGISTGIGFT- 112
K +T++ L T ITV D+ A GLK F S P+ +++ K++ Y+ E+ + + F
Sbjct: 86 KWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKREHINLGCDVDFDI 145
Query: 113 ANPIXXXXXXXXXXXXALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLTLNDKGDTLNA 172
A P G ++F+T+ T+ N + Y + +ND G
Sbjct: 146 AGPSIRGALVLGYEGWLAGYQMNFETSKSRVTQSNFAVGYKTDEFQLHTNVND-GTEFGG 204
Query: 173 SYYHIVSPLTNTAVGAELTHSFSSNENT-LTIGTQHALDPLTSVKARVNNYGRASALIQH 231
S Y V+ TAV T + N NT I ++ +DP A+VNN
Sbjct: 205 SIYQKVNKKLETAVNLAWT---AGNSNTRFGIAAKYQVDPDACFSAKVNNSSLIGLGYTQ 261
Query: 232 EWRPKSLFTISGEVDTRAIEKSA-KIGLALALK 263
+P T+S +D + + K+GL L +
Sbjct: 262 TLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQ 294
>pdb|3ZTV|A Chain A, Structure Of Haemophilus Influenzae Nad Nucleotidase
(Nadn)
pdb|3ZU0|A Chain A, Structure Of Haemophilus Influenzae Nad Nucleotidase
(Nadn)
pdb|3ZU0|B Chain B, Structure Of Haemophilus Influenzae Nad Nucleotidase
(Nadn)
Length = 579
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 6/109 (5%)
Query: 141 GNFTKCNAGLSYTHTDLIASLTLNDKGDTLNAS-YYHIVSPLTNTAV-GAELTHSFSSNE 198
G F+ NA L+ L L+ GD + + Y+ + + AV A H F+
Sbjct: 44 GGFSAVNAKLNKLRKKYKNPLVLH-AGDAITGTLYFTLFGGSADAAVMNAGNFHYFTLGN 102
Query: 199 NTLTIGTQHALDPLTSVKARV---NNYGRASALIQHEWRPKSLFTISGE 244
+ G + L L +K V N S+++ ++W+P +FT+ GE
Sbjct: 103 HEFDAGNEGLLKLLEPLKIPVLSANVIPDKSSILYNKWKPYDIFTVDGE 151
>pdb|4FGC|A Chain A, Crystal Structure Of Active Site Mutant C55a Of Nitrile
Reductase Quef, Bound To Substrate Preq0
pdb|4FGC|B Chain B, Crystal Structure Of Active Site Mutant C55a Of Nitrile
Reductase Quef, Bound To Substrate Preq0
pdb|4FGC|C Chain C, Crystal Structure Of Active Site Mutant C55a Of Nitrile
Reductase Quef, Bound To Substrate Preq0
pdb|4FGC|D Chain D, Crystal Structure Of Active Site Mutant C55a Of Nitrile
Reductase Quef, Bound To Substrate Preq0
pdb|4FGC|E Chain E, Crystal Structure Of Active Site Mutant C55a Of Nitrile
Reductase Quef, Bound To Substrate Preq0
Length = 165
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 23/51 (45%)
Query: 40 FLADVSTQLKNKNITTDVKVDTNSNLFTTITVDEPAPGLKSIFSFIVPDQR 90
+ DV NK++ D V N FT++ P +I+ +PD++
Sbjct: 26 YAPDVLESFPNKHVNRDYFVKFNCPEFTSLAPKTGQPDFATIYISYIPDEK 76
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.131 0.365
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,613,382
Number of Sequences: 62578
Number of extensions: 247515
Number of successful extensions: 519
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 515
Number of HSP's gapped (non-prelim): 7
length of query: 264
length of database: 14,973,337
effective HSP length: 97
effective length of query: 167
effective length of database: 8,903,271
effective search space: 1486846257
effective search space used: 1486846257
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)