Query 024666
Match_columns 264
No_of_seqs 134 out of 596
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 06:27:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024666.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024666hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd07306 Porin3_VDAC Voltage-de 100.0 2.9E-50 6.4E-55 359.5 37.7 239 22-263 31-276 (276)
2 KOG3126 Porin/voltage-dependen 100.0 7.6E-50 1.6E-54 351.0 29.1 241 21-264 33-281 (281)
3 cd07303 Porin3 Eukaryotic pori 100.0 3.1E-47 6.7E-52 339.5 32.4 243 11-262 23-273 (274)
4 cd07305 Porin3_Tom40 Transloca 100.0 1.9E-44 4.2E-49 322.5 31.2 238 11-263 28-279 (279)
5 PF01459 Porin_3: Eukaryotic p 100.0 6.9E-38 1.5E-42 278.0 32.6 231 16-257 34-273 (273)
6 KOG3296 Translocase of outer m 100.0 2.8E-35 6.1E-40 260.5 8.3 245 9-263 50-308 (308)
7 TIGR00989 3a0801s07tom40 mitoc 99.7 7.3E-17 1.6E-21 131.1 12.9 117 12-137 31-161 (161)
8 cd07305 Porin3_Tom40 Transloca 99.4 1.1E-09 2.4E-14 98.1 28.3 185 67-260 26-224 (279)
9 PF01459 Porin_3: Eukaryotic p 99.0 1.7E-06 3.7E-11 76.5 28.7 143 114-262 73-225 (273)
10 cd07306 Porin3_VDAC Voltage-de 98.9 2.1E-06 4.5E-11 76.8 24.1 162 38-205 103-273 (276)
11 cd07303 Porin3 Eukaryotic pori 98.7 3E-05 6.4E-10 69.4 25.0 132 125-263 88-221 (274)
12 TIGR00989 3a0801s07tom40 mitoc 97.8 0.00047 1E-08 56.5 12.1 49 142-193 105-161 (161)
13 KOG3126 Porin/voltage-dependen 97.2 0.046 9.9E-07 49.0 17.9 152 38-193 108-265 (281)
14 KOG3296 Translocase of outer m 96.3 0.0028 6E-08 57.2 2.6 134 125-262 104-255 (308)
15 PF10082 DUF2320: Uncharacteri 92.6 8.4 0.00018 35.6 22.1 46 218-263 329-380 (381)
16 PRK10716 long-chain fatty acid 89.2 21 0.00045 34.1 18.4 75 167-246 286-362 (435)
17 PF11854 DUF3374: Protein of u 86.0 33 0.00072 34.6 15.1 69 125-200 484-554 (637)
18 PF12519 DUF3722: Protein of u 85.7 2.1 4.6E-05 38.0 5.9 65 125-192 189-259 (260)
19 COG2067 FadL Long-chain fatty 84.9 25 0.00055 33.7 13.1 77 167-248 285-364 (440)
20 COG2067 FadL Long-chain fatty 84.5 28 0.0006 33.4 13.2 96 118-217 289-399 (440)
21 PF03349 Toluene_X: Outer memb 82.5 42 0.00092 31.3 17.8 95 167-263 269-378 (427)
22 PF03349 Toluene_X: Outer memb 81.3 47 0.001 31.0 23.0 136 115-262 269-425 (427)
23 PF11383 DUF3187: Protein of u 79.3 51 0.0011 30.2 15.1 66 197-262 236-315 (319)
24 PF13609 Porin_4: Gram-negativ 76.6 52 0.0011 28.8 14.1 47 197-244 248-304 (311)
25 PF04357 DUF490: Family of unk 72.4 36 0.00079 31.1 9.9 61 169-232 315-378 (379)
26 cd00342 gram_neg_porins Porins 70.1 79 0.0017 28.0 19.2 73 144-218 201-292 (329)
27 PRK15318 intimin-like protein 68.4 1.4E+02 0.0031 30.3 14.8 39 124-162 166-205 (730)
28 PF06178 KdgM: Oligogalacturon 67.9 20 0.00043 31.0 6.6 78 167-244 61-156 (218)
29 cd00342 gram_neg_porins Porins 67.3 90 0.002 27.6 17.4 101 144-247 162-297 (329)
30 PF10082 DUF2320: Uncharacteri 66.8 1.1E+02 0.0023 28.2 17.5 79 184-263 259-343 (381)
31 PF13557 Phenol_MetA_deg: Puta 60.7 1E+02 0.0023 26.1 13.9 37 224-262 210-246 (248)
32 PF05275 CopB: Copper resistan 59.0 1.2E+02 0.0025 26.2 9.6 78 169-247 56-140 (210)
33 PF11383 DUF3187: Protein of u 57.7 1.5E+02 0.0033 27.1 15.4 97 125-223 170-300 (319)
34 PF14052 Caps_assemb_Wzi: Caps 57.2 1E+02 0.0022 29.3 10.0 43 221-263 398-442 (443)
35 PRK10993 outer membrane protea 57.0 1.6E+02 0.0034 27.0 18.7 211 19-246 27-271 (314)
36 PRK03761 LPS assembly outer me 51.8 2.9E+02 0.0063 28.5 16.0 99 124-235 611-732 (778)
37 PRK09980 ompL outer membrane p 49.9 75 0.0016 27.8 7.1 52 167-218 71-123 (230)
38 PRK14574 hmsH outer membrane p 48.3 3.4E+02 0.0074 28.3 15.6 168 94-261 595-815 (822)
39 TIGR03509 OMP_MtrB_PioB decahe 47.8 3.1E+02 0.0067 27.6 14.9 176 78-263 447-648 (649)
40 PF11924 DUF3442: Protein of u 46.7 52 0.0011 29.5 5.8 38 223-262 95-133 (280)
41 PRK10049 pgaA outer membrane p 45.8 3.5E+02 0.0075 27.7 12.3 113 132-246 522-660 (765)
42 PF01278 Omptin: Omptin family 45.5 2.3E+02 0.0051 25.6 25.0 206 24-247 8-251 (294)
43 TIGR03014 EpsL exopolysacchari 44.9 2.6E+02 0.0057 26.0 12.3 109 152-264 218-344 (381)
44 PRK04423 organic solvent toler 44.9 3.8E+02 0.0083 27.9 16.1 83 124-208 627-720 (798)
45 PRK10716 long-chain fatty acid 42.3 3.1E+02 0.0067 26.1 22.3 46 169-214 340-396 (435)
46 TIGR03519 Bac_Flav_fam_1 Bacte 41.8 2.6E+02 0.0056 25.0 16.9 61 184-261 227-291 (292)
47 PF03895 YadA_anchor: YadA-lik 41.1 1.3E+02 0.0027 21.3 8.3 24 197-220 38-61 (78)
48 PRK14574 hmsH outer membrane p 38.8 4.1E+02 0.009 27.7 11.6 100 146-247 593-718 (822)
49 PF05420 BCSC_C: Cellulose syn 37.6 97 0.0021 28.8 6.2 41 169-211 299-341 (342)
50 PF11924 DUF3442: Protein of u 36.4 3.1E+02 0.0068 24.4 15.7 133 125-263 105-248 (280)
51 PF13609 Porin_4: Gram-negativ 36.3 2.9E+02 0.0063 24.0 15.0 24 197-220 281-304 (311)
52 PF04453 OstA_C: Organic solve 33.6 3.7E+02 0.0081 24.5 10.6 32 124-155 316-347 (388)
53 PF13557 Phenol_MetA_deg: Puta 32.5 3E+02 0.0066 23.1 11.6 46 173-220 170-230 (248)
54 PF09381 Porin_OmpG: Outer mem 31.2 1.7E+02 0.0037 26.2 6.3 65 198-262 224-299 (301)
55 PRK10993 outer membrane protea 30.8 4.3E+02 0.0092 24.3 11.7 74 169-246 133-209 (314)
56 PRK10177 putative invasin; Pro 29.7 5.3E+02 0.011 25.0 13.1 38 124-161 168-206 (465)
57 PF06178 KdgM: Oligogalacturon 29.5 3.7E+02 0.008 23.1 9.7 29 220-248 59-87 (218)
58 cd01347 ligand_gated_channel T 28.7 5.1E+02 0.011 24.6 10.3 50 172-221 339-403 (635)
59 PF03895 YadA_anchor: YadA-lik 28.4 2.1E+02 0.0046 20.1 7.5 40 220-262 37-76 (78)
60 PF13505 OMP_b-brl: Outer memb 27.5 2.8E+02 0.006 21.1 13.9 25 221-245 129-153 (176)
61 PF11231 DUF3034: Protein of u 26.0 4.7E+02 0.01 23.2 10.4 15 92-106 58-72 (258)
62 COG4206 BtuB Outer membrane co 24.1 3.2E+02 0.0069 27.2 7.3 22 201-222 561-582 (608)
63 PRK15318 intimin-like protein 23.6 4.4E+02 0.0095 27.0 8.3 80 74-153 226-310 (730)
64 smart00869 Autotransporter Aut 20.5 4.9E+02 0.011 21.4 8.2 36 184-219 172-213 (261)
No 1
>cd07306 Porin3_VDAC Voltage-dependent anion channel of the outer mitochondrial membrane. The voltage-dependent anion channel (VDAC) regulates the flux of mostly anionic metabolites through the outer mitochondrial membrane, which is highly permeable to small molecules. VDAC is the most abundant protein in the outer membrane, and membrane potentials can toggle VDAC between open or high-conducting and closed or low-conducting forms. VDAC binds to and is regulated in part by hexokinase, an interaction that renders mitochondria less susceptible to pro-apoptotic signals, most likely by intefering with VDAC's capability to respond to Bcl-2 family proteins. While VDAC appears to play a key role in mitochondrially induced cell death, a proposed involvement in forming the mitochondrial permeability transition pore, which is characteristic for damaged mitochondria and apoptosis, has been challenged by more recent studies.
Probab=100.00 E-value=2.9e-50 Score=359.53 Aligned_cols=239 Identities=38% Similarity=0.561 Sum_probs=227.3
Q ss_pred eecceEEEEEeeeeCC--ceeEEEEEEEEeeCceEEEEEEcCCCcEEEEEEEec-CCCCeEEEEEEEec---CCCCceeE
Q 024666 22 LVMHLQAITSSGVKKG--ELFLADVSTQLKNKNITTDVKVDTNSNLFTTITVDE-PAPGLKSIFSFIVP---DQRSGKVE 95 (264)
Q Consensus 22 ~~~~~v~~~s~~~~~~--~~~~g~l~~~y~~~~~~l~~~~~t~g~l~~~i~~~~-~~~glk~~~~~~~p---~~~~~k~~ 95 (264)
..++|++|++++.+++ ++++|++|++|+.++++++++|+|+|++.+++++++ ++||+|++++.++| +.++++++
T Consensus 31 k~~~gv~~~~~g~~~~~~~~~~g~~e~k~~~~~~t~~~k~~t~n~l~t~v~~~~~~~~glk~~~~~~~~p~~~~~s~kl~ 110 (276)
T cd07306 31 KTPNGVEFTSTGSKKPDTGKVSGSLEAKYKIKGLTLTQKWNTDNVLLTEITIEDLLAPGLKLTLDTTFPPNTGKKSGKLK 110 (276)
T ss_pred ECCCCeEEEEEEEeCCCCceEEEEEEEEEEeCCEEEEEEEeCCCceeEEEEECcccCCcceEEEEEEECCCCCCceEEEE
Confidence 4677999999998877 799999999999999999999999999999999999 77999999999975 36799999
Q ss_pred EEEeecceeeeEEEeccCCCeEEEEEEEeCCcceEeEEEEeecCCCcceeEEEEEeEEcCCeEEEEEEccCCCeEEEEEE
Q 024666 96 LQYQHEYAGISTGIGFTANPIVNFSGVVGNNSVALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLTLNDKGDTLNASYY 175 (264)
Q Consensus 96 ~~y~~~~~~~~~~v~l~~~P~~~~s~v~~~~~~~lG~e~~yd~~~~~~~~~~~~~~Y~~~d~~~s~~~~~~~~~~~~Sy~ 175 (264)
++|+|+++++++++++..+|.++.++++++++|++|+|+.||..++.+++|+++++|+.+||+++++++| ++.+.+|||
T Consensus 111 ~~y~~~~~~~~~~v~~~~~p~~~~s~~~g~~~~~~G~e~~yd~~~~~~~~~~~~~~Y~~~d~~~s~~l~~-~~~l~~S~~ 189 (276)
T cd07306 111 AGYKHDPININADVDLNKGPLVGASAVLGYKGFLLGAEVVYDTAKSKFTKYNFALGYTNGDFELSLKLNN-GKTLRGSYF 189 (276)
T ss_pred EEEecCCeeEEEEecccCCCeeEEEEEecccceEEEEEEEEeccCCcEeeEEEEEEEecCCeEEEEEECC-CCEEEEEEE
Confidence 9999999999999999889999999999999999999999999988899999999999999999999999 789999999
Q ss_pred EEeCCCcceeEEEEEEEeecCCceeEEEEEEEeeCCCCeEEEEEcCCceEEEEEEEeeCCCeEEEEEEEeeccccC-CCc
Q 024666 176 HIVSPLTNTAVGAELTHSFSSNENTLTIGTQHALDPLTSVKARVNNYGRASALIQHEWRPKSLFTISGEVDTRAIE-KSA 254 (264)
Q Consensus 176 ~kv~~~~~~~~g~e~~~~~~~~~~~~~vG~~y~ld~~~~~Kakv~s~g~v~~~y~~kl~p~~~l~ls~~~d~~~~~-~~~ 254 (264)
||++|+ +++|+|+.|++..+++++++|+||++|+++++|||||++|.++++||++|+|++++++|+++|+++++ +.|
T Consensus 190 ~kv~~~--l~~g~e~~~~~~~~~~~~~vg~~y~l~~~~~vkakv~~~g~v~~~y~~kl~~~v~~tls~~~d~~~~~~~~~ 267 (276)
T cd07306 190 HKVSPR--LAVGAKVTWYSGTNETTFAVGGQYALDPDALVKAKVNNDGQLGLSYQHKLRPGVTLTLSAGFDAKNLNQGGH 267 (276)
T ss_pred EEcCCC--eEEEEEEEEecCCCCcEEEEEEEEEcCCCCEEEEEECCCceEEEEEEEEcCCCcEEEEEEEeeccCcCCCCC
Confidence 999999 79999999999889999999999999888999999999999999999999999999999999999884 799
Q ss_pred eeEEEEEEe
Q 024666 255 KIGLALALK 263 (264)
Q Consensus 255 K~G~gl~l~ 263 (264)
|||++|+||
T Consensus 268 K~G~~l~~~ 276 (276)
T cd07306 268 KFGLSLSLK 276 (276)
T ss_pred eEEEEEEeC
Confidence 999999986
No 2
>KOG3126 consensus Porin/voltage-dependent anion-selective channel protein [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.6e-50 Score=350.99 Aligned_cols=241 Identities=38% Similarity=0.477 Sum_probs=226.1
Q ss_pred eeecceEEEEEeeeeCC--ceeEEEEEEEEeeC--ceEEEEEEcCCCcEEEEEEEec-CCCCeEEEEEEEecC---CCCc
Q 024666 21 LLVMHLQAITSSGVKKG--ELFLADVSTQLKNK--NITTDVKVDTNSNLFTTITVDE-PAPGLKSIFSFIVPD---QRSG 92 (264)
Q Consensus 21 f~~~~~v~~~s~~~~~~--~~~~g~l~~~y~~~--~~~l~~~~~t~g~l~~~i~~~~-~~~glk~~~~~~~p~---~~~~ 92 (264)
..+++||+|+++|..++ +++.|++|++|+.+ +++++++|+|||+|.++|++++ ++||+|++++.++|+ .+++
T Consensus 33 t~t~~gv~ftssg~~~~~~~~v~gsle~k~~~~~~glt~t~kw~Tdn~L~t~I~~~~~~~pglk~~~~~s~~p~~~~ks~ 112 (281)
T KOG3126|consen 33 TKTESGVEFTSSGSVNTDTGKVKGSLETKYKDKDYGLTLTEKWNTDNTLGTEITVEDQLAPGLKLTLDSSFSPNTGKKSG 112 (281)
T ss_pred eeccCcEEEEeeeccccceeeeeeeeEEEEeeccCceEEEEEeecCCccceEEEEccccCCceEEEEEEeecCcccccce
Confidence 34667899999998775 79999999999997 6999999999999999999988 999999999999755 6899
Q ss_pred eeEEEEeecceeeeEEEeccCCCeEEEEEEEeCCcceEeEEEEeecCCCcceeEEEEEeEEcCCeEEEEEEccCCCeEEE
Q 024666 93 KVELQYQHEYAGISTGIGFTANPIVNFSGVVGNNSVALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLTLNDKGDTLNA 172 (264)
Q Consensus 93 k~~~~y~~~~~~~~~~v~l~~~P~~~~s~v~~~~~~~lG~e~~yd~~~~~~~~~~~~~~Y~~~d~~~s~~~~~~~~~~~~ 172 (264)
|++++|.||++++.++..+.++|.+.+++|+++++|++|+|+.||++++.+++|+++++|..+|+++++.++| ++++.+
T Consensus 113 Klk~~y~~~~~~~~~~~~~~~~P~i~~s~v~g~~g~l~G~~~~fDt~~~~~t~~n~~lgy~~~d~~l~~~~nn-~~~~~~ 191 (281)
T KOG3126|consen 113 KLKLSYARDHFNLGADDFLTANPLILGSLVLGHEGWLLGYETTFDTASGKLTKYNAALGYTTEDFTLHLNLNN-GTEFLA 191 (281)
T ss_pred eeecccccccceeeeccccccCCeEEEEEEecccceEEEEeEEEeccCCcEeeEEEEEEeecCCcEEEEEecc-cchhhh
Confidence 9999999999999986444589999999999999999999999999999999999999999999999999999 579999
Q ss_pred EEEEEeCCCcceeEEEEEEEeecCCceeEEEEEEEeeCCCCeEEEEEcCCceEEEEEEEeeCCCeEEEEEEEeeccccCC
Q 024666 173 SYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHALDPLTSVKARVNNYGRASALIQHEWRPKSLFTISGEVDTRAIEK 252 (264)
Q Consensus 173 Sy~~kv~~~~~~~~g~e~~~~~~~~~~~~~vG~~y~ld~~~~~Kakv~s~g~v~~~y~~kl~p~~~l~ls~~~d~~~~~~ 252 (264)
|+|||++++ ++++++++|.....++.++||.||.+|+.+++||||++.|+++++|||+|+|++++++|+++|.++++.
T Consensus 192 s~yq~v~~~--~~~~~~~~~~~~~~~~~~~igt~Y~lD~~t~VkAKVnn~g~~gl~yq~~lrp~i~~t~s~~~d~~~~~~ 269 (281)
T KOG3126|consen 192 SIYQRVNEK--LETGANAEWIAGSSNTRFTIGTKYALDPDTSVKAKVNNAGLAGLGYQQTLRPGIKVTLSAEFDGKALDA 269 (281)
T ss_pred hhhhhhcch--heeeeeEEEeecCCccEEEEEEEeccCCCceeeeeecCCceeeEEEEEecCCCcEEEEEEEEeccCCCC
Confidence 999999999 799999999998889999999999999999999999999999999999999999999999999999955
Q ss_pred CceeEEEEEEeC
Q 024666 253 SAKIGLALALKP 264 (264)
Q Consensus 253 ~~K~G~gl~l~~ 264 (264)
.||||++|+|+|
T Consensus 270 ~hK~Glsl~~~~ 281 (281)
T KOG3126|consen 270 GHKFGLSLALKP 281 (281)
T ss_pred CcceeEEEeecC
Confidence 599999999998
No 3
>cd07303 Porin3 Eukaryotic porin family that forms channels in the mitochondrial outer membrane. The porin family 3 contains two sub-families that play vital roles in the mitochondrial outer membrane, a translocase for unfolded pre-proteins (Tom40) and the voltage-dependent anion channel (VDAC) that regulates the flux of mostly anionic metabolites through the outer mitochondrial membrane.
Probab=100.00 E-value=3.1e-47 Score=339.46 Aligned_cols=243 Identities=22% Similarity=0.313 Sum_probs=220.2
Q ss_pred hhhhhcCccceeecceEEEEEeeeeCCceeEEEEEEEEeeC--ceEEEEEEcCCCcEEEEEEEec-CCCCeEEEEEEEe-
Q 024666 11 LLLSFLMINALLVMHLQAITSSGVKKGELFLADVSTQLKNK--NITTDVKVDTNSNLFTTITVDE-PAPGLKSIFSFIV- 86 (264)
Q Consensus 11 ~~~~~~~~~~f~~~~~v~~~s~~~~~~~~~~g~l~~~y~~~--~~~l~~~~~t~g~l~~~i~~~~-~~~glk~~~~~~~- 86 (264)
+.+++.++|+||++|.+.+.+. +++|++.++++++|..+ +++++++|++|+.+.+++++.+ +.||+|+++++++
T Consensus 23 ~~v~~~~~~~f~~s~~~~~~~~--~~~~~~~~~~~~k~~~~~~~~t~~~~~~~dn~~~~~~~~~~~~~~glk~~~~~~~~ 100 (274)
T cd07303 23 LDVKTKSELEFTSSGSANTETI--ESTTKVGGSLETKYRWSPYGLTFTEKWNTDNTLGLEITVEDQLSRGLKSTFDSSFS 100 (274)
T ss_pred EEEEecCCCccEEccccccccc--CCCceEEEEEEEeeeecCCCeEEEEEEEcCCcceEEEEEecccCCCeEEEEEEEEC
Confidence 4577889999999999988764 55799999999998763 5899999999999999999998 8999999999995
Q ss_pred cC--CCCceeEEEEeecceeeeEEEeccCCCeEEEEEEEeCCcceEeEEEEeecCCCcceeEEEEEeEEc--CCeEEEEE
Q 024666 87 PD--QRSGKVELQYQHEYAGISTGIGFTANPIVNFSGVVGNNSVALGTDLSFDTATGNFTKCNAGLSYTH--TDLIASLT 162 (264)
Q Consensus 87 p~--~~~~k~~~~y~~~~~~~~~~v~l~~~P~~~~s~v~~~~~~~lG~e~~yd~~~~~~~~~~~~~~Y~~--~d~~~s~~ 162 (264)
|. .+.++++.+|++++++++.+++. .+|.+..+++.++++|++|+|+.||+.+ ..++++++++|.. +||+++++
T Consensus 101 ~~~~~~~~q~~~~y~~~~~~~~l~~~~-~gp~v~~~~~~g~~~~~~G~e~~yd~~~-~~~~~~~~~~y~~~y~d~~~s~~ 178 (274)
T cd07303 101 PNTGKKNAKIKTGYKRINLGCDVDFDI-AGPLIRGALVLGYEGWLAGYQMVFETVS-RVTQSNFAVGYKTDYNEFQAHTN 178 (274)
T ss_pred CCCccEEEEEeccEEcCCeeEEEEeec-CCCEEEEEEEEeecceEEEEEEEEeccc-cccccceEEEEEccCCCeEEEEE
Confidence 43 35677888888887776666554 5899999999999999999999999987 5689999999999 89999999
Q ss_pred EccCCCeEEEEEEEEeCCCcceeEEEEEEEeecCCceeEEEEEEEeeCCCCeEEEEEcCCceEEEEEEEeeCCCeEEEEE
Q 024666 163 LNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHALDPLTSVKARVNNYGRASALIQHEWRPKSLFTIS 242 (264)
Q Consensus 163 ~~~~~~~~~~Sy~~kv~~~~~~~~g~e~~~~~~~~~~~~~vG~~y~ld~~~~~Kakv~s~g~v~~~y~~kl~p~~~l~ls 242 (264)
++| ++.+++|||||++|+ +++|+|++|+.+++++.++||+||++|+++++|||||++|.++++||++|+|+++|++|
T Consensus 179 l~~-~~~l~~Sy~hkvs~~--~~~g~e~~~~~~~~e~~~~vG~~y~l~~~~~vkakids~g~v~~~~~~~l~~~~~ltls 255 (274)
T cd07303 179 VND-GTEFGGSIYHKVNDK--LEVGVNLAATAGNSNTRFGIAAKYQVDPDACFSASVNNSSLVGLGYTQTLKPGIKLTLS 255 (274)
T ss_pred EcC-CCeEEEEEEEEcCCc--eEEEEEEEeeccCCccEEEEEEEEecCCCCEEEEEECCCceEEEEEEEEcCCCcEEEEE
Confidence 998 789999999999999 79999999998889999999999999888999999999999999999999999999999
Q ss_pred EEeeccccCCCceeEEEEEE
Q 024666 243 GEVDTRAIEKSAKIGLALAL 262 (264)
Q Consensus 243 ~~~d~~~~~~~~K~G~gl~l 262 (264)
+++|++ +++||||+||+|
T Consensus 256 ~~~D~~--~~~~KfG~gl~~ 273 (274)
T cd07303 256 ALLDHK--AGGHKLGLGLEF 273 (274)
T ss_pred EEecCC--CCCeeEEEEEEe
Confidence 999998 889999999987
No 4
>cd07305 Porin3_Tom40 Translocase of outer mitochondrial membrane 40 (Tom40). Tom40 forms a channel in the mitochondrial outer membrane with a pore about 1.5 to 2.5 nanometers wide. It functions as a transport channel for unfolded protein chains and forms a complex with Tom5, Tom6, Tom7, and Tom22. The primary receptors Tom20 and Tom70 recruit the unfolded precursor protein from the mitochondrial-import stimulating factor (MSF) or cytosolic Hsc70. The precursor passes through the Tom40 channel and through another channel in the inner membrane, formed by Tim23, to be finally translocated into the mitochondrial matrix. The process depends on a proton motive force across the inner membrane and requires a contact site where the outer and inner membranes come close. Tom40 is also involved in inserting outer membrane proteins into the membrane, most likely not via a lateral opening in the pore, but by transfering precursor proteins to an outer membrane sorting and assembly machinery.
Probab=100.00 E-value=1.9e-44 Score=322.46 Aligned_cols=238 Identities=22% Similarity=0.304 Sum_probs=210.2
Q ss_pred hhhhhcCccceeecceEEEEEeeeeCCceeEEEEEEEEeeCc--eEEEEEEcCCCcEEEEEEEecCCCCeEEEEEEEecC
Q 024666 11 LLLSFLMINALLVMHLQAITSSGVKKGELFLADVSTQLKNKN--ITTDVKVDTNSNLFTTITVDEPAPGLKSIFSFIVPD 88 (264)
Q Consensus 11 ~~~~~~~~~~f~~~~~v~~~s~~~~~~~~~~g~l~~~y~~~~--~~l~~~~~t~g~l~~~i~~~~~~~glk~~~~~~~p~ 88 (264)
+.++|+||||||++|.+.+++....++|. |++.|..++ +.+.+++|++|++++++.++ +.+.++.++.+++|+
T Consensus 28 ~~~~k~ls~~f~~shs~~lg~~~~~~~y~----f~a~y~~~~~~~~~~~~id~~g~l~~~~~~~-~~~~~~~k~~~~~~~ 102 (279)
T cd07305 28 LDVNKGLSPHFQVSHSLHLGSSSLTSSYQ----FGATYVGDKQYPFLQGDIDNDGNLNARIIHQ-LGDRLRSKLQAQLQD 102 (279)
T ss_pred EEEccccCcCeeEEEEEEECCCCCCCCcE----eeeEEecCCCcEEEEEEeCCCCceeEEEEec-cCcceEEEEEEEecC
Confidence 56789999999999999999864345688 999999988 99999999999999999999 688988888888755
Q ss_pred C--CCceeEEEEeecceeeeEEEecc-CCCe-EEEEEEEe-------CCcceEeEEEEeec-CCCcceeEEEEEeEEcCC
Q 024666 89 Q--RSGKVELQYQHEYAGISTGIGFT-ANPI-VNFSGVVG-------NNSVALGTDLSFDT-ATGNFTKCNAGLSYTHTD 156 (264)
Q Consensus 89 ~--~~~k~~~~y~~~~~~~~~~v~l~-~~P~-~~~s~v~~-------~~~~~lG~e~~yd~-~~~~~~~~~~~~~Y~~~d 156 (264)
. ...+++.+|.++ +.+++++ .+|. ++.+++++ +|+|++|+|+.|++ +.++++.++++++|+.+|
T Consensus 103 ~~~~~~q~~~dy~g~----d~t~~l~~~n~~~~~~sg~~~~~ylq~vt~~l~lG~E~~~~~~~~~~~~~~~~~~rY~~~d 178 (279)
T cd07305 103 SKFNMSQLELDYRGD----DFTASLKLANPDILNETGIYVASYLQSVTPKLALGGELVYQRVPGNGISVLSYAARYTAGN 178 (279)
T ss_pred CCceeEEEEEEEcCC----ceEEEEEEeCCCcccccEEEEEEEEEEccCcEEEEEEEEEEEcCCCCceeEEEEEEEccCC
Confidence 3 244555555555 5555555 5785 46666665 99999999999997 567899999999999999
Q ss_pred eEEEEEEccCCCeEEEEEEEEeCCCcceeEEEEEEEeecCCceeEEEEEEEeeCCCCeEEEEEcCCceEEEEEEEeeCCC
Q 024666 157 LIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHALDPLTSVKARVNNYGRASALIQHEWRPK 236 (264)
Q Consensus 157 ~~~s~~~~~~~~~~~~Sy~~kv~~~~~~~~g~e~~~~~~~~~~~~~vG~~y~ld~~~~~Kakv~s~g~v~~~y~~kl~p~ 236 (264)
|+++++++++ ..+.+|||||++|+ +++|+|++|+...+++.+++|+||.++ ++++||+||++|.|+++||+||+|+
T Consensus 179 ~~~s~~l~~~-~~l~asY~~kvs~~--l~lG~el~~~~~~~es~~tvg~~y~~~-~~~~k~~ids~g~v~~~~e~~l~~~ 254 (279)
T cd07305 179 WIASGQLGAQ-GGLHLSYYRKLSDK--LQLGVELELNLRTRESTATLGYQYDFR-QSRFRGSIDSNGKVSAVLEKRLPLP 254 (279)
T ss_pred EEEEEEEcCC-CeEEEEEEEEcccc--eEeeeeeeecccCCceeEEEEEEEEcC-CCEEEEEEcCCCEEEEEEEEecCCC
Confidence 9999999995 69999999999999 799999999999999999999999994 9999999999999999999999999
Q ss_pred eEEEEEEEeeccccCCCceeEEEEEEe
Q 024666 237 SLFTISGEVDTRAIEKSAKIGLALALK 263 (264)
Q Consensus 237 ~~l~ls~~~d~~~~~~~~K~G~gl~l~ 263 (264)
+++++|+++|++ ++.+|||+||+|+
T Consensus 255 ~~l~ls~~~d~~--~~~~kfG~gl~i~ 279 (279)
T cd07305 255 LSLLLSGELNHV--KNDYKFGFGLTIG 279 (279)
T ss_pred eEEEEEEEEccc--CCcceEEEEEEeC
Confidence 999999999998 7899999999985
No 5
>PF01459 Porin_3: Eukaryotic porin; InterPro: IPR001925 The major protein of the outer mitochondrial membrane of eukaryotes is a porin that forms a voltage-dependent anion-selective channel (VDAC) that behaves as a general diffusion pore for small hydrophilic molecules [, , , ]. The channel adopts an open conformation at low or zero membrane potential and a closed conformation at potentials above 30-40 mV. This protein contains about 280 amino acids and its sequence is composed of between 12 to 16 beta-strands that span the mitochondrial outer membrane. Yeast contains two members of this family (genes POR1 and POR2); vertebrates have at least three members (genes VDAC1, VDAC2 and VDAC3) [].; GO: 0008308 voltage-gated anion channel activity, 0006820 anion transport, 0044070 regulation of anion transport, 0055085 transmembrane transport, 0005741 mitochondrial outer membrane; PDB: 3EMN_X 2K4T_A 2JK4_A.
Probab=100.00 E-value=6.9e-38 Score=277.96 Aligned_cols=231 Identities=32% Similarity=0.415 Sum_probs=194.3
Q ss_pred cCccceeecceEEEEEeeeeCCceeEEEEEEEEeeCceEEEEEEcCCCcEEEEEEEec-CCCCeEEEEEEEe-cC--CCC
Q 024666 16 LMINALLVMHLQAITSSGVKKGELFLADVSTQLKNKNITTDVKVDTNSNLFTTITVDE-PAPGLKSIFSFIV-PD--QRS 91 (264)
Q Consensus 16 ~~~~~f~~~~~v~~~s~~~~~~~~~~g~l~~~y~~~~~~l~~~~~t~g~l~~~i~~~~-~~~glk~~~~~~~-p~--~~~ 91 (264)
.++|+|+++|.+.++. +..+.+.|+++|. +..++.+|+.++....+++++. +.|++++++.++. |+ .+.
T Consensus 34 ~~~~~f~~~~~~~~~~-----~~~~~~~~~~~~~--~~~~~~~~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 106 (273)
T PF01459_consen 34 PNGPNFTVSHSFSLGT-----SVPSSYSFGAKYK--GPKLTVKGDTDNDGNLEASVRNKLSPGLKLKLSAQLSPGSGKKS 106 (273)
T ss_dssp TTCEEEEEEEEEETTT-----T--EEEEEEEEEE--CEEEEEEEETTTEEEEEEEEESSTTTTEEEEEEEEE-TTTS-EE
T ss_pred cCcceEEEEEEEecCC-----CCccceEEEEEEe--CceeeEEEEeCCcccEEEEEecccCcceEEEEEEEEeecCCcee
Confidence 4455555555322221 1367888999999 5555567777777777777777 8999999999995 44 268
Q ss_pred ceeEEEEeecceeeeEEEeccCCCeEEEEEEE-eCCcceEeEEEEeecCCCcceeEEEEEeEEcC----CeEEEEEEccC
Q 024666 92 GKVELQYQHEYAGISTGIGFTANPIVNFSGVV-GNNSVALGTDLSFDTATGNFTKCNAGLSYTHT----DLIASLTLNDK 166 (264)
Q Consensus 92 ~k~~~~y~~~~~~~~~~v~l~~~P~~~~s~v~-~~~~~~lG~e~~yd~~~~~~~~~~~~~~Y~~~----d~~~s~~~~~~ 166 (264)
.+++++|+++++++.++++...+|.+.++.+. ..|+|++|+|+.||..++...+|+++++|..+ +|++++++.+.
T Consensus 107 ~~l~~~y~~~~~~~~~~~~~~~~~~~~~s~~~~v~~~~~lG~e~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~~~ 186 (273)
T PF01459_consen 107 AQLEADYKGDDFNATFKVDNDNNPIFNASYVQSVTPNLALGAEATYDLSSGKSSKYNAGLSYAARYTHPDYTASATLSNN 186 (273)
T ss_dssp EEEEEEEEETTEEEEEEEEESTS-EEEEEEEEEET-TEEEEEEEEEETTTTCEEEEEEEEEEEET----TEEEEEEE-ET
T ss_pred eEEEEEEecCCEEEEEEEcccCCCcEEEEEEEeccccEEEEEEEEEecccCCcCcceEEEEEeccccceeEEEEEEEcCC
Confidence 89999999999999999987558999999999 56699999999999999999999999999888 99999999655
Q ss_pred CCeEEEEEEEEeCCCcceeEEEEEEEeecCCceeEEEEEEEeeCCCCeEEEEEcCCceEEEEEEEeeCCCeEEEEEEEee
Q 024666 167 GDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHALDPLTSVKARVNNYGRASALIQHEWRPKSLFTISGEVD 246 (264)
Q Consensus 167 ~~~~~~Sy~~kv~~~~~~~~g~e~~~~~~~~~~~~~vG~~y~ld~~~~~Kakv~s~g~v~~~y~~kl~p~~~l~ls~~~d 246 (264)
.+.+.+|||||++++ +++|+|++|+...+++.++||++|++++.+++|+|||++|.|+++||++|+|++++++|+++|
T Consensus 187 ~~~l~~sy~~k~~~~--~~~g~e~~~~~~~~~~~~~vG~~~~l~~~~~vk~kvds~g~v~~~~~~~l~~~~~l~ls~~~d 264 (273)
T PF01459_consen 187 FGTLTASYFQKVNDK--LQLGAELTYNLSSRESTFTVGYQYKLDDSSTVKAKVDSNGRVSASYEQKLNPGVTLTLSAELD 264 (273)
T ss_dssp TTEEEEEEEEESSTT--EEEEEEEEEETTCCEEEEEEEEEEEECTTEEEEEEEETTSEEEEEEEEEECTTEEEEEEEEEC
T ss_pred CCEEEEEEEEEeccc--eeeeeeeeecccCCCceEEEEEEEEcCcccEEEEEEcCCCEEEEEEEEecCCCcEEEEEEEEc
Confidence 789999999999999 799999999999999999999999997777999999999999999999999999999999999
Q ss_pred ccccCCCceeE
Q 024666 247 TRAIEKSAKIG 257 (264)
Q Consensus 247 ~~~~~~~~K~G 257 (264)
++ +..||||
T Consensus 265 ~~--~~~~KfG 273 (273)
T PF01459_consen 265 HK--NNNHKFG 273 (273)
T ss_dssp TT---C-EEEE
T ss_pred cC--CCCCCcC
Confidence 99 5589998
No 6
>KOG3296 consensus Translocase of outer mitochondrial membrane complex, subunit TOM40 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.8e-35 Score=260.55 Aligned_cols=245 Identities=17% Similarity=0.224 Sum_probs=210.3
Q ss_pred hhhhhhhcCccceeecceEEEEEeeeeCCce----eEEEEEEEEeeCceEEEEEEcCCCcEEEEEEEecCCCCeEEEEEE
Q 024666 9 RLLLLSFLMINALLVMHLQAITSSGVKKGEL----FLADVSTQLKNKNITTDVKVDTNSNLFTTITVDEPAPGLKSIFSF 84 (264)
Q Consensus 9 ~~~~~~~~~~~~f~~~~~v~~~s~~~~~~~~----~~g~l~~~y~~~~~~l~~~~~t~g~l~~~i~~~~~~~glk~~~~~ 84 (264)
+.|.++|+|||||||+|.+.++..+ +.++. -.+.+++.|....+.+.+.+|+||++++++.++ +.++|+.++..
T Consensus 50 ~kl~v~k~Ls~~fqvs~t~~ls~~~-~sg~~fg~ty~~~~q~~~~~~~~il~G~vD~~Gslna~l~~~-l~~~Lr~K~~~ 127 (308)
T KOG3296|consen 50 VKLGVNKGLSNHFQVSPTFVLSHIA-ASGYRFGPTYVYTFQASPTEAFLILRGDVDNDGSLNARLIHQ-LTDNLRSKVAL 127 (308)
T ss_pred eEeeecccccCceEeccceecccCc-cccceeccceeeeeccccCCCcceEEEecCCCCchhheeecc-cchhhHHHHHH
Confidence 4688999999999999999998765 23332 235577776666788999999999999999999 68888777766
Q ss_pred EecCCCCceeEEEEeecceeeeEEEecc-CCCeEEEEEEE-------eCCcceEeEEEEeec-CCCcceeEEEEEeEEcC
Q 024666 85 IVPDQRSGKVELQYQHEYAGISTGIGFT-ANPIVNFSGVV-------GNNSVALGTDLSFDT-ATGNFTKCNAGLSYTHT 155 (264)
Q Consensus 85 ~~p~~~~~k~~~~y~~~~~~~~~~v~l~-~~P~~~~s~v~-------~~~~~~lG~e~~yd~-~~~~~~~~~~~~~Y~~~ 155 (264)
++++ ...++.|+..++++.+.+..+. .+|.+..++++ .+|+|+||+|+.|+. ........+.++||...
T Consensus 128 q~~~--~k~ve~q~~~e~~g~d~t~~~~~~n~~~~~sgi~v~~~lqsvT~~LsLG~El~~~~~~~~~~s~ls~a~RY~~~ 205 (308)
T KOG3296|consen 128 QIQQ--SKEVESQVTGEYRGRDYTLTLPLGNPDLGESGIYVASYLQSVTPRLSLGGELLYQRRPGPEESGLSYAGRYEHS 205 (308)
T ss_pred Hhcc--hhhhccccccceecccccccccccCcccccchHHHHHHHhhhcccccccceeEeccCCCccccceeeeeeeeec
Confidence 6533 4578999999999999888777 68887666665 399999999999998 33456678888899999
Q ss_pred CeEEEEEEccCCCeEEEEEEEEeCCCcceeEEEEEEEeecCCceeEEEEEEEee-CCCCeEEEEEcCCceEEEEEEEeeC
Q 024666 156 DLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHAL-DPLTSVKARVNNYGRASALIQHEWR 234 (264)
Q Consensus 156 d~~~s~~~~~~~~~~~~Sy~~kv~~~~~~~~g~e~~~~~~~~~~~~~vG~~y~l-d~~~~~Kakv~s~g~v~~~y~~kl~ 234 (264)
+|++++++.-. ..+++||||..++ ++.|+|+.++..-+++..+++++|++ .+++.+|++||+||.|++++|+||.
T Consensus 206 ~~~~~~t~g~~--g~~~~y~~r~~~~--~~~~ve~~~~~~~~~~~~t~a~~~~l~~~~s~~rg~vDSn~~v~~~lek~L~ 281 (308)
T KOG3296|consen 206 NWDATVTLGQQ--GLTGTYYQRAVEK--LQMGVEFETNTRLQSTDVTAAYGYDLPTAQSVFRGSVDSNWSVGAVLEKKLP 281 (308)
T ss_pred ceeeEEecccc--cceehhhhhhhhh--hccceeEeeecccCCcceEEEEEeeccCccceEEEEeccCceehhhhHhhcC
Confidence 99999999874 6899999999999 79999999999888999999999998 6789999999999999999999997
Q ss_pred CCeEEEEEEEeeccccCCCceeEEEEEEe
Q 024666 235 PKSLFTISGEVDTRAIEKSAKIGLALALK 263 (264)
Q Consensus 235 p~~~l~ls~~~d~~~~~~~~K~G~gl~l~ 263 (264)
+++++.+|+++||. +..+|||+||++.
T Consensus 282 l~l~~~ls~~lnh~--k~~~~~G~gl~~~ 308 (308)
T KOG3296|consen 282 LPLTLALSAELNHV--KNDFKFGFGLTIG 308 (308)
T ss_pred CCceeeeeeeeccc--ccccccceeEEeC
Confidence 79999999999999 8899999999974
No 7
>TIGR00989 3a0801s07tom40 mitochondrial import receptor subunit Tom40. translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tom40 proteins.
Probab=99.73 E-value=7.3e-17 Score=131.06 Aligned_cols=117 Identities=14% Similarity=0.097 Sum_probs=92.0
Q ss_pred hhhhc--CccceeecceEEEEEeeeeCCceeEEEEEEEEeeCceEEEEEEcCCCcEEEEEEEecCCCCeEEEEEEEecC-
Q 024666 12 LLSFL--MINALLVMHLQAITSSGVKKGELFLADVSTQLKNKNITTDVKVDTNSNLFTTITVDEPAPGLKSIFSFIVPD- 88 (264)
Q Consensus 12 ~~~~~--~~~~f~~~~~v~~~s~~~~~~~~~~g~l~~~y~~~~~~l~~~~~t~g~l~~~i~~~~~~~glk~~~~~~~p~- 88 (264)
.++|+ ||||||++|.+.|++.. .++|. |++.|.++++.+.+.+|+||++++++.++| .+.+..++++++.+
T Consensus 31 d~~K~~~ls~~FqvSHs~~mgs~~-~p~Y~----FgA~y~~~~~~l~G~id~dG~l~ar~~~~~-~~~~~~K~~~Q~~~~ 104 (161)
T TIGR00989 31 DVTKAFSLAPLFQVSHQFAMGSQR-LPPYA----FSALFGTNQLFAQGNLDNDGAVSTRLNYRW-GDRTISKVQFQISGG 104 (161)
T ss_pred EEecccccCCceeEEEEEEeCCCC-CCCce----eeeEecCCcEEEEEEeCCCCCEEEEEEEee-CcceeEEEEEEecCC
Confidence 45666 69999999999999854 45788 999999888999999999999999999994 78877777776432
Q ss_pred -CCCceeEEEEeecceeeeEEEeccCCCeE-EE--EEEE-------eCCcceEeEEEEee
Q 024666 89 -QRSGKVELQYQHEYAGISTGIGFTANPIV-NF--SGVV-------GNNSVALGTDLSFD 137 (264)
Q Consensus 89 -~~~~k~~~~y~~~~~~~~~~v~l~~~P~~-~~--s~v~-------~~~~~~lG~e~~yd 137 (264)
....+++.||+.+++.+..++ .||.+ +. ++++ .||+|+||+|+.|+
T Consensus 105 ~~~~~Q~e~DY~G~Dft~~lk~---~Np~~~~~~~sGi~v~sylQsVTp~LaLG~E~~yq 161 (161)
T TIGR00989 105 QPDMCQFEHDHLGDDFSASLKA---INPSFLEKGLTGIFVGSYLQSVTPRLGLGLEALWQ 161 (161)
T ss_pred CCceEEEEEEecCCeEEEEEEE---cCcccccccceEEEEEeeeehhCcceeeeeeeEeC
Confidence 245677888888865544433 48885 32 5554 39999999999995
No 8
>cd07305 Porin3_Tom40 Translocase of outer mitochondrial membrane 40 (Tom40). Tom40 forms a channel in the mitochondrial outer membrane with a pore about 1.5 to 2.5 nanometers wide. It functions as a transport channel for unfolded protein chains and forms a complex with Tom5, Tom6, Tom7, and Tom22. The primary receptors Tom20 and Tom70 recruit the unfolded precursor protein from the mitochondrial-import stimulating factor (MSF) or cytosolic Hsc70. The precursor passes through the Tom40 channel and through another channel in the inner membrane, formed by Tim23, to be finally translocated into the mitochondrial matrix. The process depends on a proton motive force across the inner membrane and requires a contact site where the outer and inner membranes come close. Tom40 is also involved in inserting outer membrane proteins into the membrane, most likely not via a lateral opening in the pore, but by transfering precursor proteins to an outer membrane sorting and assembly machinery.
Probab=99.39 E-value=1.1e-09 Score=98.10 Aligned_cols=185 Identities=17% Similarity=0.183 Sum_probs=130.3
Q ss_pred EEEEEec-CCCCeEEEEEEEecC---CCCceeEEEEeecc--eeeeEEEeccCCCeEEEEEEE-eCCcceEeEEEEeecC
Q 024666 67 TTITVDE-PAPGLKSIFSFIVPD---QRSGKVELQYQHEY--AGISTGIGFTANPIVNFSGVV-GNNSVALGTDLSFDTA 139 (264)
Q Consensus 67 ~~i~~~~-~~~glk~~~~~~~p~---~~~~k~~~~y~~~~--~~~~~~v~l~~~P~~~~s~v~-~~~~~~lG~e~~yd~~ 139 (264)
.++++.. +.+.+.+.=...... ....++...|..+. .-+..+++ ..-.+++.... -.+++. ..+..+..
T Consensus 26 ~r~~~~k~ls~~f~~shs~~lg~~~~~~~y~f~a~y~~~~~~~~~~~~id--~~g~l~~~~~~~~~~~~~--~k~~~~~~ 101 (279)
T cd07305 26 FRLDVNKGLSPHFQVSHSLHLGSSSLTSSYQFGATYVGDKQYPFLQGDID--NDGNLNARIIHQLGDRLR--SKLQAQLQ 101 (279)
T ss_pred EEEEEccccCcCeeEEEEEEECCCCCCCCcEeeeEEecCCCcEEEEEEeC--CCCceeEEEEeccCcceE--EEEEEEec
Confidence 3444444 666655444444211 23568889999887 65666654 22223333333 234444 44444444
Q ss_pred CCcceeEEEEEeEEcCCeEEEEEEccCC-----CeEEEEEEEEeCCCcceeEEEEEEEe--ecCCceeEEEEEEEeeCCC
Q 024666 140 TGNFTKCNAGLSYTHTDLIASLTLNDKG-----DTLNASYYHIVSPLTNTAVGAELTHS--FSSNENTLTIGTQHALDPL 212 (264)
Q Consensus 140 ~~~~~~~~~~~~Y~~~d~~~s~~~~~~~-----~~~~~Sy~~kv~~~~~~~~g~e~~~~--~~~~~~~~~vG~~y~ld~~ 212 (264)
......+.+...|+++||++++++.+.. ..+.++|.|+++|+ +++|+|+.|. ...+.+..++|++|.- ++
T Consensus 102 ~~~~~~~q~~~dy~g~d~t~~l~~~n~~~~~~sg~~~~~ylq~vt~~--l~lG~E~~~~~~~~~~~~~~~~~~rY~~-~d 178 (279)
T cd07305 102 DSKFNMSQLELDYRGDDFTASLKLANPDILNETGIYVASYLQSVTPK--LALGGELVYQRVPGNGISVLSYAARYTA-GN 178 (279)
T ss_pred CCCceeEEEEEEEcCCceEEEEEEeCCCcccccEEEEEEEEEEccCc--EEEEEEEEEEEcCCCCceeEEEEEEEcc-CC
Confidence 4456778999999999999999976642 47899999999999 6999999999 5678899999999999 78
Q ss_pred CeEEEEEcCCceEEEEEEEeeCCCeEEEEEEEeeccccCCCceeEEEE
Q 024666 213 TSVKARVNNYGRASALIQHEWRPKSLFTISGEVDTRAIEKSAKIGLAL 260 (264)
Q Consensus 213 ~~~Kakv~s~g~v~~~y~~kl~p~~~l~ls~~~d~~~~~~~~K~G~gl 260 (264)
.++.+++++.+.+.+.|-|+++|++.+....+.+.. .....+.+|.
T Consensus 179 ~~~s~~l~~~~~l~asY~~kvs~~l~lG~el~~~~~--~~es~~tvg~ 224 (279)
T cd07305 179 WIASGQLGAQGGLHLSYYRKLSDKLQLGVELELNLR--TRESTATLGY 224 (279)
T ss_pred EEEEEEEcCCCeEEEEEEEEcccceEeeeeeeeccc--CCceeEEEEE
Confidence 999999999999999999999997665555555543 3344444443
No 9
>PF01459 Porin_3: Eukaryotic porin; InterPro: IPR001925 The major protein of the outer mitochondrial membrane of eukaryotes is a porin that forms a voltage-dependent anion-selective channel (VDAC) that behaves as a general diffusion pore for small hydrophilic molecules [, , , ]. The channel adopts an open conformation at low or zero membrane potential and a closed conformation at potentials above 30-40 mV. This protein contains about 280 amino acids and its sequence is composed of between 12 to 16 beta-strands that span the mitochondrial outer membrane. Yeast contains two members of this family (genes POR1 and POR2); vertebrates have at least three members (genes VDAC1, VDAC2 and VDAC3) [].; GO: 0008308 voltage-gated anion channel activity, 0006820 anion transport, 0044070 regulation of anion transport, 0055085 transmembrane transport, 0005741 mitochondrial outer membrane; PDB: 3EMN_X 2K4T_A 2JK4_A.
Probab=99.00 E-value=1.7e-06 Score=76.54 Aligned_cols=143 Identities=19% Similarity=0.245 Sum_probs=102.9
Q ss_pred CCeEEEEEEE---eCCcceEeEEEEeecCCCcceeEEEEEeEEcCCeEEEEEEcc-CCCeEEEEEEEEeCCCcceeEEEE
Q 024666 114 NPIVNFSGVV---GNNSVALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLTLND-KGDTLNASYYHIVSPLTNTAVGAE 189 (264)
Q Consensus 114 ~P~~~~s~v~---~~~~~~lG~e~~yd~~~~~~~~~~~~~~Y~~~d~~~s~~~~~-~~~~~~~Sy~~kv~~~~~~~~g~e 189 (264)
.+.....+.+ ..+++.+=.++.+.... ....+.+.+.|..+++.+.+.+.+ ....+.+||.|.+.|+ +++|+|
T Consensus 73 d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~s~~~~v~~~--~~lG~e 149 (273)
T PF01459_consen 73 DNDGNLEASVRNKLSPGLKLKLSAQLSPGS-GKKSAQLEADYKGDDFNATFKVDNDNNPIFNASYVQSVTPN--LALGAE 149 (273)
T ss_dssp TTEEEEEEEEESSTTTTEEEEEEEEE-TTT-S-EEEEEEEEEEETTEEEEEEEEESTS-EEEEEEEEEET-T--EEEEEE
T ss_pred CCcccEEEEEecccCcceEEEEEEEEeecC-CceeeEEEEEEecCCEEEEEEEcccCCCcEEEEEEEecccc--EEEEEE
Confidence 4555444444 36775555555543322 236788889999999999999884 1248999999999999 699999
Q ss_pred EEEeecCCcee-----EEEEEEEeeCCCCeEEEEE-cCCceEEEEEEEeeCCCeEEEEEEEeeccccCCCceeEEEEEE
Q 024666 190 LTHSFSSNENT-----LTIGTQHALDPLTSVKARV-NNYGRASALIQHEWRPKSLFTISGEVDTRAIEKSAKIGLALAL 262 (264)
Q Consensus 190 ~~~~~~~~~~~-----~~vG~~y~ld~~~~~Kakv-~s~g~v~~~y~~kl~p~~~l~ls~~~d~~~~~~~~K~G~gl~l 262 (264)
+.|+...++.. ++++.+|.- ++.++-+++ ++...+.+.|-|++++.+.+....+.+.. .+...+.+|...
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~Y~~-~~~~~~~~~~~~~~~l~~sy~~k~~~~~~~g~e~~~~~~--~~~~~~~vG~~~ 225 (273)
T PF01459_consen 150 ATYDLSSGKSSKYNAGLSYAARYTH-PDYTASATLSNNFGTLTASYFQKVNDKLQLGAELTYNLS--SRESTFTVGYQY 225 (273)
T ss_dssp EEEETTTTCEEEEEEEEEEEET-----TEEEEEEE-ETTTEEEEEEEEESSTTEEEEEEEEEETT--CCEEEEEEEEEE
T ss_pred EEEecccCCcCcceEEEEEeccccc-eeEEEEEEEcCCCCEEEEEEEEEeccceeeeeeeeeccc--CCCceEEEEEEE
Confidence 99998876555 455555554 699999999 78999999999999999999998888886 445556655544
No 10
>cd07306 Porin3_VDAC Voltage-dependent anion channel of the outer mitochondrial membrane. The voltage-dependent anion channel (VDAC) regulates the flux of mostly anionic metabolites through the outer mitochondrial membrane, which is highly permeable to small molecules. VDAC is the most abundant protein in the outer membrane, and membrane potentials can toggle VDAC between open or high-conducting and closed or low-conducting forms. VDAC binds to and is regulated in part by hexokinase, an interaction that renders mitochondria less susceptible to pro-apoptotic signals, most likely by intefering with VDAC's capability to respond to Bcl-2 family proteins. While VDAC appears to play a key role in mitochondrially induced cell death, a proposed involvement in forming the mitochondrial permeability transition pore, which is characteristic for damaged mitochondria and apoptosis, has been challenged by more recent studies.
Probab=98.86 E-value=2.1e-06 Score=76.84 Aligned_cols=162 Identities=15% Similarity=0.178 Sum_probs=107.8
Q ss_pred ceeEEEEEEEEeeCceEEEEEEcCC--CcEEEEEEEecCCCCeEEEEEEEe--cC--CCCceeEEEEeecceeeeEEEec
Q 024666 38 ELFLADVSTQLKNKNITTDVKVDTN--SNLFTTITVDEPAPGLKSIFSFIV--PD--QRSGKVELQYQHEYAGISTGIGF 111 (264)
Q Consensus 38 ~~~~g~l~~~y~~~~~~l~~~~~t~--g~l~~~i~~~~~~~glk~~~~~~~--p~--~~~~k~~~~y~~~~~~~~~~v~l 111 (264)
+.-+|.+++.|..+.+.+...++-. -.+.....+. .+++-+-.++.. .. .....+.+.|.++++.+...+.
T Consensus 103 ~~~s~kl~~~y~~~~~~~~~~v~~~~~p~~~~s~~~g--~~~~~~G~e~~yd~~~~~~~~~~~~~~Y~~~d~~~s~~l~- 179 (276)
T cd07306 103 GKKSGKLKAGYKHDPININADVDLNKGPLVGASAVLG--YKGFLLGAEVVYDTAKSKFTKYNFALGYTNGDFELSLKLN- 179 (276)
T ss_pred CCceEEEEEEEecCCeeEEEEecccCCCeeEEEEEec--ccceEEEEEEEEeccCCcEeeEEEEEEEecCCeEEEEEEC-
Confidence 5567778888888776666665543 2233333332 244444444442 11 1245678899999776665553
Q ss_pred cCCCeEEEEEEE-eCCcceEeEEEEeecCCCcceeEEEEEeEEcC-CeEEEEEEccCCCeEEEEEEEEeCCCcceeEEEE
Q 024666 112 TANPIVNFSGVV-GNNSVALGTDLSFDTATGNFTKCNAGLSYTHT-DLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAE 189 (264)
Q Consensus 112 ~~~P~~~~s~v~-~~~~~~lG~e~~yd~~~~~~~~~~~~~~Y~~~-d~~~s~~~~~~~~~~~~Sy~~kv~~~~~~~~g~e 189 (264)
....+.+|... ..+++.+|+|+.|+...+. +...+|++|.-+ ++++.+++++.+ .+.++|.|+++|++.+.+++|
T Consensus 180 -~~~~l~~S~~~kv~~~l~~g~e~~~~~~~~~-~~~~vg~~y~l~~~~~vkakv~~~g-~v~~~y~~kl~~~v~~tls~~ 256 (276)
T cd07306 180 -NGKTLRGSYFHKVSPRLAVGAKVTWYSGTNE-TTFAVGGQYALDPDALVKAKVNNDG-QLGLSYQHKLRPGVTLTLSAG 256 (276)
T ss_pred -CCCEEEEEEEEEcCCCeEEEEEEEEecCCCC-cEEEEEEEEEcCCCCEEEEEECCCc-eEEEEEEEEcCCCcEEEEEEE
Confidence 24557788777 7999999999999986554 689999999866 499999998865 899999999999954444444
Q ss_pred EEEee-cCCceeEEEEE
Q 024666 190 LTHSF-SSNENTLTIGT 205 (264)
Q Consensus 190 ~~~~~-~~~~~~~~vG~ 205 (264)
+.... .++...+.+|.
T Consensus 257 ~d~~~~~~~~~K~G~~l 273 (276)
T cd07306 257 FDAKNLNQGGHKFGLSL 273 (276)
T ss_pred eeccCcCCCCCeEEEEE
Confidence 44422 11445555553
No 11
>cd07303 Porin3 Eukaryotic porin family that forms channels in the mitochondrial outer membrane. The porin family 3 contains two sub-families that play vital roles in the mitochondrial outer membrane, a translocase for unfolded pre-proteins (Tom40) and the voltage-dependent anion channel (VDAC) that regulates the flux of mostly anionic metabolites through the outer mitochondrial membrane.
Probab=98.67 E-value=3e-05 Score=69.44 Aligned_cols=132 Identities=14% Similarity=0.153 Sum_probs=97.7
Q ss_pred CCcceEeEEEEeecCCCcceeEEEEEeEEcCCeEEEEEEccCCCeEEEEEEEEeCCCcceeEEEEEEEeecCC--ceeEE
Q 024666 125 NNSVALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSN--ENTLT 202 (264)
Q Consensus 125 ~~~~~lG~e~~yd~~~~~~~~~~~~~~Y~~~d~~~s~~~~~~~~~~~~Sy~~kv~~~~~~~~g~e~~~~~~~~--~~~~~ 202 (264)
.|++.+=.++.++.... .....+...|..+++.+.+.+.+.+ .+..++.+.+.++ +.+|+|+.|+...+ +..+.
T Consensus 88 ~~glk~~~~~~~~~~~~-~~~~q~~~~y~~~~~~~~l~~~~~g-p~v~~~~~~g~~~--~~~G~e~~yd~~~~~~~~~~~ 163 (274)
T cd07303 88 SRGLKSTFDSSFSPNTG-KKNAKIKTGYKRINLGCDVDFDIAG-PLIRGALVLGYEG--WLAGYQMVFETVSRVTQSNFA 163 (274)
T ss_pred CCCeEEEEEEEECCCCc-cEEEEEeccEEcCCeeEEEEeecCC-CEEEEEEEEeecc--eEEEEEEEEeccccccccceE
Confidence 68888888888764333 3456666699999999999997644 6667889999999 69999999997432 23444
Q ss_pred EEEEEeeCCCCeEEEEEcCCceEEEEEEEeeCCCeEEEEEEEeeccccCCCceeEEEEEEe
Q 024666 203 IGTQHALDPLTSVKARVNNYGRASALIQHEWRPKSLFTISGEVDTRAIEKSAKIGLALALK 263 (264)
Q Consensus 203 vG~~y~ld~~~~~Kakv~s~g~v~~~y~~kl~p~~~l~ls~~~d~~~~~~~~K~G~gl~l~ 263 (264)
+++.-.. ++..+-+++++.+.+.++|-||++|.+.+..-.+.+.. .++..+.+|...+
T Consensus 164 ~~y~~~y-~d~~~s~~l~~~~~l~~Sy~hkvs~~~~~g~e~~~~~~--~~e~~~~vG~~y~ 221 (274)
T cd07303 164 VGYKTDY-NEFQAHTNVNDGTEFGGSIYHKVNDKLEVGVNLAATAG--NSNTRFGIAAKYQ 221 (274)
T ss_pred EEEEccC-CCeEEEEEEcCCCeEEEEEEEEcCCceEEEEEEEeecc--CCccEEEEEEEEe
Confidence 4433222 67778899988899999999999998888877777754 4456666665543
No 12
>TIGR00989 3a0801s07tom40 mitochondrial import receptor subunit Tom40. translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tom40 proteins.
Probab=97.82 E-value=0.00047 Score=56.47 Aligned_cols=49 Identities=22% Similarity=0.242 Sum_probs=41.4
Q ss_pred cceeEEEEEeEEcCCeEEEEEEccCCC--------eEEEEEEEEeCCCcceeEEEEEEEe
Q 024666 142 NFTKCNAGLSYTHTDLIASLTLNDKGD--------TLNASYYHIVSPLTNTAVGAELTHS 193 (264)
Q Consensus 142 ~~~~~~~~~~Y~~~d~~~s~~~~~~~~--------~~~~Sy~~kv~~~~~~~~g~e~~~~ 193 (264)
+...+.+-..|+++||++++++.| ++ .+.+||.|.|.|+ +++|+|+.|.
T Consensus 105 ~~~~~Q~e~DY~G~Dft~~lk~~N-p~~~~~~~sGi~v~sylQsVTp~--LaLG~E~~yq 161 (161)
T TIGR00989 105 QPDMCQFEHDHLGDDFSASLKAIN-PSFLEKGLTGIFVGSYLQSVTPR--LGLGLEALWQ 161 (161)
T ss_pred CCceEEEEEEecCCeEEEEEEEcC-cccccccceEEEEEeeeehhCcc--eeeeeeeEeC
Confidence 345566678999999999999987 33 6789999999999 6999999984
No 13
>KOG3126 consensus Porin/voltage-dependent anion-selective channel protein [Inorganic ion transport and metabolism]
Probab=97.25 E-value=0.046 Score=48.96 Aligned_cols=152 Identities=12% Similarity=0.102 Sum_probs=92.8
Q ss_pred ceeEEEEEEEEeeCceEEEE-EEcCCCc-E--EEEEEEecCCCCeEEEEEEEecCCCCceeEEEEeecceeeeEEEeccC
Q 024666 38 ELFLADVSTQLKNKNITTDV-KVDTNSN-L--FTTITVDEPAPGLKSIFSFIVPDQRSGKVELQYQHEYAGISTGIGFTA 113 (264)
Q Consensus 38 ~~~~g~l~~~y~~~~~~l~~-~~~t~g~-l--~~~i~~~~~~~glk~~~~~~~p~~~~~k~~~~y~~~~~~~~~~v~l~~ 113 (264)
++.+|-++..|..+-..+.. ..+..+- + ++.+.++++.-|....+++..-.-....+.+.|..+++.+...++ .
T Consensus 108 ~~ks~Klk~~y~~~~~~~~~~~~~~~~P~i~~s~v~g~~g~l~G~~~~fDt~~~~~t~~n~~lgy~~~d~~l~~~~n--n 185 (281)
T KOG3126|consen 108 GKKSGKLKLSYARDHFNLGADDFLTANPLILGSLVLGHEGWLLGYETTFDTASGKLTKYNAALGYTTEDFTLHLNLN--N 185 (281)
T ss_pred cccceeeecccccccceeeeccccccCCeEEEEEEecccceEEEEeEEEeccCCcEeeEEEEEEeecCCcEEEEEec--c
Confidence 34455577766655433332 1111111 1 333333434445555555541112344578888888766655442 2
Q ss_pred CCeEEEEEEE-eCCcceEeEEEEeecCCCcceeEEEEEeEEc-CCeEEEEEEccCCCeEEEEEEEEeCCCcceeEEEEEE
Q 024666 114 NPIVNFSGVV-GNNSVALGTDLSFDTATGNFTKCNAGLSYTH-TDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELT 191 (264)
Q Consensus 114 ~P~~~~s~v~-~~~~~~lG~e~~yd~~~~~~~~~~~~~~Y~~-~d~~~s~~~~~~~~~~~~Sy~~kv~~~~~~~~g~e~~ 191 (264)
.-...+|.-+ ....+..|.++.|..... -+..+++.+|.- ++..+.+++++. ..+.+.|-|++.|+.++.+++|+.
T Consensus 186 ~~~~~~s~yq~v~~~~~~~~~~~~~~~~~-~~~~~igt~Y~lD~~t~VkAKVnn~-g~~gl~yq~~lrp~i~~t~s~~~d 263 (281)
T KOG3126|consen 186 GTEFLASIYQRVNEKLETGANAEWIAGSS-NTRFTIGTKYALDPDTSVKAKVNNA-GLAGLGYQQTLRPGIKVTLSAEFD 263 (281)
T ss_pred cchhhhhhhhhhcchheeeeeEEEeecCC-ccEEEEEEEeccCCCceeeeeecCC-ceeeEEEEEecCCCcEEEEEEEEe
Confidence 2222322222 456689999999998765 568999999975 578999999995 599999999999996565666555
Q ss_pred Ee
Q 024666 192 HS 193 (264)
Q Consensus 192 ~~ 193 (264)
..
T Consensus 264 ~~ 265 (281)
T KOG3126|consen 264 GK 265 (281)
T ss_pred cc
Confidence 54
No 14
>KOG3296 consensus Translocase of outer mitochondrial membrane complex, subunit TOM40 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.27 E-value=0.0028 Score=57.18 Aligned_cols=134 Identities=17% Similarity=0.176 Sum_probs=92.9
Q ss_pred CCcceEeEEEEeecCC------------CcceeEEEEEeEEcCCeEEEEEEccC----CCeEEEEEEEEeCCCcceeEEE
Q 024666 125 NNSVALGTDLSFDTAT------------GNFTKCNAGLSYTHTDLIASLTLNDK----GDTLNASYYHIVSPLTNTAVGA 188 (264)
Q Consensus 125 ~~~~~lG~e~~yd~~~------------~~~~~~~~~~~Y~~~d~~~s~~~~~~----~~~~~~Sy~~kv~~~~~~~~g~ 188 (264)
-..-.+.+++.|+... ++...+.....|+..|+++++...+- -..+.++|.|.+.++ +++|+
T Consensus 104 D~~Gslna~l~~~l~~~Lr~K~~~q~~~~k~ve~q~~~e~~g~d~t~~~~~~n~~~~~sgi~v~~~lqsvT~~--LsLG~ 181 (308)
T KOG3296|consen 104 DNDGSLNARLIHQLTDNLRSKVALQIQQSKEVESQVTGEYRGRDYTLTLPLGNPDLGESGIYVASYLQSVTPR--LSLGG 181 (308)
T ss_pred CCCCchhheeecccchhhHHHHHHHhcchhhhccccccceecccccccccccCcccccchHHHHHHHhhhccc--ccccc
Confidence 4445777788776653 23445777889999999999987642 124678999999999 69999
Q ss_pred EEEEee--cCCceeEEEEEEEeeCCCCeEEEEEcCCceEEEEEEEeeCCCeEEEEEEEeeccccCCCceeEEEEEE
Q 024666 189 ELTHSF--SSNENTLTIGTQHALDPLTSVKARVNNYGRASALIQHEWRPKSLFTISGEVDTRAIEKSAKIGLALAL 262 (264)
Q Consensus 189 e~~~~~--~~~~~~~~vG~~y~ld~~~~~Kakv~s~g~v~~~y~~kl~p~~~l~ls~~~d~~~~~~~~K~G~gl~l 262 (264)
|+.|.. ...+..+++++||.. .....-+-....|.-+. |-+|+.+++......+.|..--+...-++.++.+
T Consensus 182 El~~~~~~~~~~s~ls~a~RY~~-~~~~~~~t~g~~g~~~~-y~~r~~~~~~~~ve~~~~~~~~~~~~t~a~~~~l 255 (308)
T KOG3296|consen 182 ELLYQRRPGPEESGLSYAGRYEH-SNWDATVTLGQQGLTGT-YYQRAVEKLQMGVEFETNTRLQSTDVTAAYGYDL 255 (308)
T ss_pred eeEeccCCCccccceeeeeeeee-cceeeEEecccccceeh-hhhhhhhhhccceeEeeecccCCcceEEEEEeec
Confidence 999998 457889999999999 45555566666655444 4456667777777777666421223455555543
No 15
>PF10082 DUF2320: Uncharacterized protein conserved in bacteria (DUF2320); InterPro: IPR018759 This domain has no known function.
Probab=92.61 E-value=8.4 Score=35.55 Aligned_cols=46 Identities=13% Similarity=0.132 Sum_probs=36.4
Q ss_pred EEcCCceEEEEEEEeeCCCeEEEEEEEeeccccC------CCceeEEEEEEe
Q 024666 218 RVNNYGRASALIQHEWRPKSLFTISGEVDTRAIE------KSAKIGLALALK 263 (264)
Q Consensus 218 kv~s~g~v~~~y~~kl~p~~~l~ls~~~d~~~~~------~~~K~G~gl~l~ 263 (264)
+-|+...+++.+..++++.+.+.++.....++-+ ..+.+++++.++
T Consensus 329 r~D~~~~~~~~~~y~~~r~~~~~~~y~~~~~~S~~~~~~y~~n~v~l~l~~~ 380 (381)
T PF10082_consen 329 REDDTYSAGLGLTYRLNRWLSLSAGYRYEDRDSNIPSYDYDRNRVGLGLTYQ 380 (381)
T ss_pred ceeeEEEEEEEEEEEecCCEEEEEEEEEEEeeCCCCCCceEeEEEEEEEEEE
Confidence 7888888999999999999888888877766432 347888888774
No 16
>PRK10716 long-chain fatty acid outer membrane transporter; Provisional
Probab=89.18 E-value=21 Score=34.06 Aligned_cols=75 Identities=15% Similarity=0.028 Sum_probs=48.0
Q ss_pred CCeEEEEEEEEeCCCcceeEEEEEEEeecCCceeEEEEEEEeeCCC--CeEEEEEcCCceEEEEEEEeeCCCeEEEEEEE
Q 024666 167 GDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHALDPL--TSVKARVNNYGRASALIQHEWRPKSLFTISGE 244 (264)
Q Consensus 167 ~~~~~~Sy~~kv~~~~~~~~g~e~~~~~~~~~~~~~vG~~y~ld~~--~~~Kakv~s~g~v~~~y~~kl~p~~~l~ls~~ 244 (264)
++.+..+..|+++|+ +.+.+.+.|..=+.=..+.+ .+. +.. ...--.-++.+.+++..++++++.++|..+..
T Consensus 286 P~~~~lg~~~~~~~~--~~l~~d~~wt~WS~~~~l~i--~~~-~g~~~~~~~~~w~D~w~~~~G~~Y~~n~~l~LRaG~~ 360 (435)
T PRK10716 286 PEMWEVSGYNRVAPQ--WAIHYSLAYTSWSQFQELKA--TSS-NGDTLFQKHEGFKDAYRIALGTTYYYDDNWTFRTGIA 360 (435)
T ss_pred CcEEEEEeEEecCCc--EEEEEEEEEeeecccceEEE--EeC-CCcceecccccceeeeEEEeeEEEECCCCeEEEEeeE
Confidence 567899999999999 58888888863222111121 110 001 01111246677788888888888888888888
Q ss_pred ee
Q 024666 245 VD 246 (264)
Q Consensus 245 ~d 246 (264)
.|
T Consensus 361 yd 362 (435)
T PRK10716 361 FD 362 (435)
T ss_pred ec
Confidence 77
No 17
>PF11854 DUF3374: Protein of unknown function (DUF3374); InterPro: IPR020016 Members of this protein family are integral proteins of the bacterial outer membrane, associated with multi-haem c-type cytochromes involved in electron transfer [, ]. The MtrB protein of Shewanella oneidensis MR-1 (SO1776) has been shown to form a complex with 1:1:1 stochiometry with the small, periplasmic decahaem cytochrome MtrA and large, surface-exposed decahaem cytochrome MtrC.
Probab=85.97 E-value=33 Score=34.56 Aligned_cols=69 Identities=13% Similarity=0.155 Sum_probs=37.2
Q ss_pred CCcceEeEEEEeecCCCcceeEEEEEeEEcCCeEEEEEEccCCCeEEEEEEEE--eCCCcceeEEEEEEEeecCCcee
Q 024666 125 NNSVALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLTLNDKGDTLNASYYHI--VSPLTNTAVGAELTHSFSSNENT 200 (264)
Q Consensus 125 ~~~~~lG~e~~yd~~~~~~~~~~~~~~Y~~~d~~~s~~~~~~~~~~~~Sy~~k--v~~~~~~~~g~e~~~~~~~~~~~ 200 (264)
.+++.+-+-+.+|.-..... -...+..++| ...+.++...+.+.+-+. +.++ +.+|++.+|.....++.
T Consensus 484 ~~~l~~~af~~~q~~~s~Q~---gs~~~~~~~W--~~~~~D~~~~~G~G~~~~~l~~~k--L~lg~dYsys~~~s~~~ 554 (637)
T PF11854_consen 484 SDDLSLYAFYNQQWIDSDQA---GSQNFSTPDW--TSDTEDKVTTVGAGFSYQGLMDDK--LSLGLDYSYSDSDSDTD 554 (637)
T ss_pred CCCeEEEEEEEeEeehhhhc---cccCccCCCc--cccccceeEEEEeceEeecccCcc--EEEeeeEEEecCccceE
Confidence 55666665555554322111 0112234455 334455555666655544 6777 69999999986644433
No 18
>PF12519 DUF3722: Protein of unknown function (DUF3722) ; InterPro: IPR022197 This family of proteins is found in eukaryotes. Proteins in this family are typically between 415 and 473 amino acids in length.
Probab=85.71 E-value=2.1 Score=37.95 Aligned_cols=65 Identities=22% Similarity=0.381 Sum_probs=52.4
Q ss_pred CCcceEeEEEEeecCCCcceeEEEEEeEEc------CCeEEEEEEccCCCeEEEEEEEEeCCCcceeEEEEEEE
Q 024666 125 NNSVALGTDLSFDTATGNFTKCNAGLSYTH------TDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTH 192 (264)
Q Consensus 125 ~~~~~lG~e~~yd~~~~~~~~~~~~~~Y~~------~d~~~s~~~~~~~~~~~~Sy~~kv~~~~~~~~g~e~~~ 192 (264)
...|++|+|+-|-.-.+. -..+.|+||.+ ..+++++++++...-+..+|--|.++. +++..++.+
T Consensus 189 ~~r~S~GaE~yys~~~ks-~G~STglRf~Tlp~~tg~PlTlTlt~NPl~GhiSstYs~k~s~~--~a~~SrfdF 259 (260)
T PF12519_consen 189 YGRFSAGAELYYSALNKS-PGCSTGLRFCTLPAHTGKPLTLTLTLNPLMGHISSTYSVKASPN--SAFCSRFDF 259 (260)
T ss_pred cceEeeccEEEEEeeccC-CcccceeEEEecCCCCCCCeEEEEEeccccccchheeeeeccCC--ceEEeeccc
Confidence 348999999988765443 36888999964 469999999998778999999999999 688877654
No 19
>COG2067 FadL Long-chain fatty acid transport protein [Lipid metabolism]
Probab=84.90 E-value=25 Score=33.73 Aligned_cols=77 Identities=10% Similarity=-0.092 Sum_probs=50.2
Q ss_pred CCeEEEEEEEEeCCCcceeEEEEEEEeecCCceeEEEEEEEeeCCCCeEEEEE---cCCceEEEEEEEeeCCCeEEEEEE
Q 024666 167 GDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHALDPLTSVKARV---NNYGRASALIQHEWRPKSLFTISG 243 (264)
Q Consensus 167 ~~~~~~Sy~~kv~~~~~~~~g~e~~~~~~~~~~~~~vG~~y~ld~~~~~Kakv---~s~g~v~~~y~~kl~p~~~l~ls~ 243 (264)
++.+..+++|+++|+ +++...+.|..=++=..+.+=.. +....+.... .+.+.+++.-+++++|.+++..+-
T Consensus 285 P~~~el~~~~~~~d~--w~~~~s~~wT~WS~f~~l~~~~~---~~~~~~~~~~~~yrD~wt~a~G~~Y~~nd~~tlragi 359 (440)
T COG2067 285 PASAELSGQHKVADQ--WAIHGSVKWTDWSSFDKLDFVFT---FGKTLFAKTEDGYRDTWTVALGTTYKFNDQWTLRAGI 359 (440)
T ss_pred CcEEEEeeeeccCCC--eEEEEEEEEeeccCCceEEEEEc---CCCccccccccccccccEEeeeceeEcCccceEeeee
Confidence 567899999999999 48999999975433222222222 2333343333 366777777777777777777776
Q ss_pred Eeecc
Q 024666 244 EVDTR 248 (264)
Q Consensus 244 ~~d~~ 248 (264)
..|..
T Consensus 360 ayD~s 364 (440)
T COG2067 360 AYDQS 364 (440)
T ss_pred eecCC
Confidence 66653
No 20
>COG2067 FadL Long-chain fatty acid transport protein [Lipid metabolism]
Probab=84.51 E-value=28 Score=33.43 Aligned_cols=96 Identities=16% Similarity=0.110 Sum_probs=52.5
Q ss_pred EEEEEE-eCCcceEeEEEEeecCCCcceeEEEEEeEEcCCeEEEEE-EccCCCeEEEEEEEEeCCCcceeEEEEEEEeec
Q 024666 118 NFSGVV-GNNSVALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLT-LNDKGDTLNASYYHIVSPLTNTAVGAELTHSFS 195 (264)
Q Consensus 118 ~~s~v~-~~~~~~lG~e~~yd~~~~~~~~~~~~~~Y~~~d~~~s~~-~~~~~~~~~~Sy~~kv~~~~~~~~g~e~~~~~~ 195 (264)
+.+... ..++|++.+.+.|-.= .++.+..+...-....+.-... ..| +-.+....=|+++|+| ++.+-+.|+..
T Consensus 289 el~~~~~~~d~w~~~~s~~wT~W-S~f~~l~~~~~~~~~~~~~~~~~yrD-~wt~a~G~~Y~~nd~~--tlragiayD~s 364 (440)
T COG2067 289 ELSGQHKVADQWAIHGSVKWTDW-SSFDKLDFVFTFGKTLFAKTEDGYRD-TWTVALGTTYKFNDQW--TLRAGIAYDQS 364 (440)
T ss_pred EEeeeeccCCCeEEEEEEEEeec-cCCceEEEEEcCCCcccccccccccc-ccEEeeeceeEcCccc--eEeeeeeecCC
Confidence 444444 5888888888887321 1333343321200111111111 344 3456677778888886 44555556633
Q ss_pred -------------CCceeEEEEEEEeeCCCCeEEE
Q 024666 196 -------------SNENTLTIGTQHALDPLTSVKA 217 (264)
Q Consensus 196 -------------~~~~~~~vG~~y~ld~~~~~Ka 217 (264)
.....+++|..|+++++..+.+
T Consensus 365 ~s~~~~~~~~iPd~Dr~~~s~G~~Y~~t~n~~vd~ 399 (440)
T COG2067 365 PSPAQNRSISIPDTDRWWLSLGTTYKFTKNLEVDA 399 (440)
T ss_pred CCcccccccccCCCCcEEEeCccEEecCCCeEEEE
Confidence 2234678888888887776654
No 21
>PF03349 Toluene_X: Outer membrane protein transport protein (OMPP1/FadL/TodX); InterPro: IPR005017 This family includes TodX from Pseudomonas putida (strain F1/ATCC 700007) Q51971 from SWISSPROT and TbuX from Burkholderia pickettii (Ralstonia pickettii) (Pseudomonas pickettii) PKO1 Q9RBW8 from SWISSPROT. These are membrane proteins of uncertain function that are involved in toluene catabolism. Related proteins involved in the degradation of similar aromatic hydrocarbons are also in this family, such as CymD O33458 from SWISSPROT.; PDB: 2R88_A 1T16_B 2R4N_B 2R4P_B 3PGU_A 2R4L_A 3DWN_B 2R4O_A 3PF1_B 3PGS_A ....
Probab=82.52 E-value=42 Score=31.28 Aligned_cols=95 Identities=8% Similarity=-0.044 Sum_probs=56.8
Q ss_pred CCeEEEEEEEEeCCCcceeEEEEEEEeecCC-ceeEEEEEEEee---CCCCeEEEEEcCCceEEEEEEEeeCCCeEEEEE
Q 024666 167 GDTLNASYYHIVSPLTNTAVGAELTHSFSSN-ENTLTIGTQHAL---DPLTSVKARVNNYGRASALIQHEWRPKSLFTIS 242 (264)
Q Consensus 167 ~~~~~~Sy~~kv~~~~~~~~g~e~~~~~~~~-~~~~~vG~~y~l---d~~~~~Kakv~s~g~v~~~y~~kl~p~~~l~ls 242 (264)
+..+.+++.|+++++ +.+.+++.|..=+. +........... .....+.-..++.+.+.+..|.+++|.++|..+
T Consensus 269 P~~~~~g~~~~~~~~--~~l~~d~~~~~WS~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~lG~~Y~~~~~l~lr~G 346 (427)
T PF03349_consen 269 PASLSLGVAYRFTDK--LLLSADYEWTDWSSFDNLYNDQFTFANGNGSTNNNIPFNWKDTWVYRLGAEYKFNDKLTLRAG 346 (427)
T ss_dssp -EEEEEEEEEESSSS--EEEEEEEEEEEGGG-SCEEEEEEEETTECTEEEEEEE---EEEEEEEEEEEEESSSSEEEEEE
T ss_pred ceeEEEEEEEecCCC--EEEEEEEEEEEhhhhhhhcccccccccccccccccCCCCccchheeeeeeEEEcCcCEEEEEE
Confidence 567999999999999 58899999864221 111111111110 012334445566677888888888888888888
Q ss_pred EEeeccccC-----------CCceeEEEEEEe
Q 024666 243 GEVDTRAIE-----------KSAKIGLALALK 263 (264)
Q Consensus 243 ~~~d~~~~~-----------~~~K~G~gl~l~ 263 (264)
...|..-.+ ..+-+++|+.++
T Consensus 347 ~~y~~sp~~~~~~~~~~p~~~~~~~s~G~~y~ 378 (427)
T PF03349_consen 347 YAYDSSPIPDETRDPLLPDTDRHWLSAGAGYR 378 (427)
T ss_dssp EEEEE-SS-CCC-BSSS--SSEEEEEEEEEEE
T ss_pred EEEeccccCccccchhhccCCcEEEEEeeEEE
Confidence 887764321 235666666554
No 22
>PF03349 Toluene_X: Outer membrane protein transport protein (OMPP1/FadL/TodX); InterPro: IPR005017 This family includes TodX from Pseudomonas putida (strain F1/ATCC 700007) Q51971 from SWISSPROT and TbuX from Burkholderia pickettii (Ralstonia pickettii) (Pseudomonas pickettii) PKO1 Q9RBW8 from SWISSPROT. These are membrane proteins of uncertain function that are involved in toluene catabolism. Related proteins involved in the degradation of similar aromatic hydrocarbons are also in this family, such as CymD O33458 from SWISSPROT.; PDB: 2R88_A 1T16_B 2R4N_B 2R4P_B 3PGU_A 2R4L_A 3DWN_B 2R4O_A 3PF1_B 3PGS_A ....
Probab=81.32 E-value=47 Score=30.98 Aligned_cols=136 Identities=10% Similarity=0.047 Sum_probs=68.3
Q ss_pred Ce-EEEEEEE-eCCcceEeEEEEee-cCCCcceeEEEEEeEEc----CCeEEEEEEccCCCeEEEEEEEEeCCCcceeEE
Q 024666 115 PI-VNFSGVV-GNNSVALGTDLSFD-TATGNFTKCNAGLSYTH----TDLIASLTLNDKGDTLNASYYHIVSPLTNTAVG 187 (264)
Q Consensus 115 P~-~~~s~v~-~~~~~~lG~e~~yd-~~~~~~~~~~~~~~Y~~----~d~~~s~~~~~~~~~~~~Sy~~kv~~~~~~~~g 187 (264)
|. +.++.-+ ..++|.+.+.+.|. .++-+.. ..-.+.... .+........|. -.+.+..-++++|+|.+.+|
T Consensus 269 P~~~~~g~~~~~~~~~~l~~d~~~~~WS~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~-~~~~lG~~Y~~~~~l~lr~G 346 (427)
T PF03349_consen 269 PASLSLGVAYRFTDKLLLSADYEWTDWSSFDNL-YNDQFTFANGNGSTNNNIPFNWKDT-WVYRLGAEYKFNDKLTLRAG 346 (427)
T ss_dssp -EEEEEEEEEESSSSEEEEEEEEEEEGGG-SCE-EEEEEEETTECTEEEEEEE---EEE-EEEEEEEEEESSSSEEEEEE
T ss_pred ceeEEEEEEEecCCCEEEEEEEEEEEhhhhhhh-cccccccccccccccccCCCCccch-heeeeeeEEEcCcCEEEEEE
Confidence 44 3444444 47889998888874 2221111 111112211 122222333442 35667777889998655555
Q ss_pred EEEEEeec-----------CCceeEEEEEEEeeCCCCeEEEEEcCCceEEEEEEEeeCCCeEEEEEE---EeeccccCCC
Q 024666 188 AELTHSFS-----------SNENTLTIGTQHALDPLTSVKARVNNYGRASALIQHEWRPKSLFTISG---EVDTRAIEKS 253 (264)
Q Consensus 188 ~e~~~~~~-----------~~~~~~~vG~~y~ld~~~~~Kakv~s~g~v~~~y~~kl~p~~~l~ls~---~~d~~~~~~~ 253 (264)
.......- .....+++|+.|+++++ ..+.++|++......+..... .++...-...
T Consensus 347 ~~y~~sp~~~~~~~~~~p~~~~~~~s~G~~y~~~~~----------~~~d~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (427)
T PF03349_consen 347 YAYDSSPIPDETRDPLLPDTDRHWLSAGAGYRFSKN----------LSLDFAYQYIFYNDVTINSTSDNGGLNGTYDGSA 416 (427)
T ss_dssp EEEEE-SS-CCC-BSSS--SSEEEEEEEEEEESSSS----------EEEEEEEEEEEEEEEEEEEB--GTCEEEEEEEEE
T ss_pred EEEeccccCccccchhhccCCcEEEEEeeEEEcCCC----------eEEEEEEEEEEccCcccccccccCceEEEEEEEE
Confidence 54333321 24567899999998533 566667776665555544432 1122100235
Q ss_pred ceeEEEEEE
Q 024666 254 AKIGLALAL 262 (264)
Q Consensus 254 ~K~G~gl~l 262 (264)
+=+|+++..
T Consensus 417 ~~~~l~~~y 425 (427)
T PF03349_consen 417 HVFGLSVSY 425 (427)
T ss_dssp EEEEEEEEE
T ss_pred EEEEEEEEe
Confidence 677777654
No 23
>PF11383 DUF3187: Protein of unknown function (DUF3187); InterPro: IPR021523 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=79.31 E-value=51 Score=30.21 Aligned_cols=66 Identities=20% Similarity=0.151 Sum_probs=41.6
Q ss_pred CceeEEEEEEEeeCCCCeEEEEEcCC--------------ceEEEEEEEeeCCCeEEEEEEEeeccccCCCceeEEEEEE
Q 024666 197 NENTLTIGTQHALDPLTSVKARVNNY--------------GRASALIQHEWRPKSLFTISGEVDTRAIEKSAKIGLALAL 262 (264)
Q Consensus 197 ~~~~~~vG~~y~ld~~~~~Kakv~s~--------------g~v~~~y~~kl~p~~~l~ls~~~d~~~~~~~~K~G~gl~l 262 (264)
......+|++|++.++..++++++.. ..+.+.|+.++.++..+.++..=|..+.+..+-|++.+.+
T Consensus 236 ~~~~~~~g~~y~~~~~~~l~~q~~~~qg~~~~~~~l~~~s~e~~lG~r~~~~~~~alei~~~En~~~~dnS~Diaf~l~l 315 (319)
T PF11383_consen 236 NTWFGGLGYGYQLTENHSLLAQYDYYQGFYDSSSELSEPSNELTLGYRYQLSERSALEISVIENLFNVDNSPDIAFHLGL 315 (319)
T ss_pred ceEEEEEEEEEEecCCEEEEEEEEEeeccccCchhhcccceEEEeeeEEEEcCCceEEEEEEecccccCCCCCeEEEEEE
Confidence 34556677777776777777766532 3377777778877777777766666555445555555443
No 24
>PF13609 Porin_4: Gram-negative porin; PDB: 2FGR_A 2FGQ_X 1E54_A 2POR_A 3POR_A 1PRN_A 6PRN_A 8PRN_A 1H6S_1 3PRN_A ....
Probab=76.63 E-value=52 Score=28.85 Aligned_cols=47 Identities=4% Similarity=0.022 Sum_probs=31.7
Q ss_pred CceeEEEEEEEeeCCCCeEEEEEcC----------CceEEEEEEEeeCCCeEEEEEEE
Q 024666 197 NENTLTIGTQHALDPLTSVKARVNN----------YGRASALIQHEWRPKSLFTISGE 244 (264)
Q Consensus 197 ~~~~~~vG~~y~ld~~~~~Kakv~s----------~g~v~~~y~~kl~p~~~l~ls~~ 244 (264)
......+++.|.+ +...+.+.... .-.+++.+++++.|++++-....
T Consensus 248 ~~~~~~~~~~Y~~-~~~~~~~~y~~~~~~~~~~~~~~~~~~g~~Y~~~~~~~~~a~y~ 304 (311)
T PF13609_consen 248 DQDAYYVGAAYTF-GKWTLYAGYGYSDSADGSDDDATSYAVGVDYDFSKNTSLYAEYA 304 (311)
T ss_dssp EEEEEEEEEEEEE-TTEEEEEEEEEEEE-GCCTEEEEEEEEEEEEEEETTEEEEEEEE
T ss_pred cceEEEEEEEEEe-CCEEEEEEEEEEEccCCCCCCeEEEEEEEEEEcCCCEEEEEEEE
Confidence 4456777888888 56777766642 22378888888888777655443
No 25
>PF04357 DUF490: Family of unknown function (DUF490); InterPro: IPR007452 This family contains several proteins of uncharacterised function.
Probab=72.39 E-value=36 Score=31.15 Aligned_cols=61 Identities=8% Similarity=0.118 Sum_probs=37.0
Q ss_pred eEEEEEEEEeCCCcceeEEEEEEEeecCCceeEEEEEEEeeCCCCeEEEEEcCC--ce-EEEEEEEe
Q 024666 169 TLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHALDPLTSVKARVNNY--GR-ASALIQHE 232 (264)
Q Consensus 169 ~~~~Sy~~kv~~~~~~~~g~e~~~~~~~~~~~~~vG~~y~ld~~~~~Kakv~s~--g~-v~~~y~~k 232 (264)
.....+=.+++++ +.+..+..+...... .-.+..+|+|.+...+++++++. +. +++.|+.+
T Consensus 315 ~~~~~~gk~l~~~--l~i~~~~~~~~~~~~-~~~~~l~y~l~~~~~l~~~~~~~~~~~g~~l~y~~~ 378 (379)
T PF04357_consen 315 DTSVTVGKYLSDR--LYISYQFGVDLGGSQ-TGEFSLEYRLNPNLSLRGSSDSGNTSQGVDLIYRKD 378 (379)
T ss_pred ceEEEEEEecCCC--EEEEEEEeecCCCCc-eEEEEEEEEEcCCEEEEEEEEcCCCceEEEEEEEEE
Confidence 3445555667777 455555444432221 24666778888888888888555 55 66666654
No 26
>cd00342 gram_neg_porins Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane. Individual 16-strand anti-parallel beta-barrels form a central pore, and trimerizes thru mainly hydrophobic interactions at the interface. Trimers are stabilized by hytrophillic clamping of Loop L2. Loop 3 bends into the pore, creating an elliptical constriction of about 7 x 11A, large enough to allow passage of a glucose molecule without steric hindrance. Removal of the C-terminal residue (usuallly F) destabilizes the trimer and removal of the 16th beta-sheet abolishes trimerization. Unlike typical membrane proteins, porins lack long hydrophobic stretches. Short turns are found at the smooth, periplasmic end, longer irregular loops are found at the rough, extracellular end. C-terminal residue forms salt bridge with N-terminus.
Probab=70.09 E-value=79 Score=28.03 Aligned_cols=73 Identities=21% Similarity=0.218 Sum_probs=41.9
Q ss_pred eeEEEEEeEEcCCeEEEEEEcc------------CCCeEEEEEEEEeCCCcceeEEEEEEEeec-------CCceeEEEE
Q 024666 144 TKCNAGLSYTHTDLIASLTLND------------KGDTLNASYYHIVSPLTNTAVGAELTHSFS-------SNENTLTIG 204 (264)
Q Consensus 144 ~~~~~~~~Y~~~d~~~s~~~~~------------~~~~~~~Sy~~kv~~~~~~~~g~e~~~~~~-------~~~~~~~vG 204 (264)
..+.+++.|....+.+.+.... ..+.+.++.-++++++ +.+.+...+... .....+.+|
T Consensus 201 ~~~~~ga~Y~~~~~~v~a~y~~~~~~~~~~~~~~~~~~~~lga~Y~~~~~--~~~~~~y~~~~~~~~~~~~~~~~~~~~G 278 (329)
T cd00342 201 RAYGAGASYDFGGLKLGAGYTNTRNDNGGGGGSAKFNGYELGATYQLTPA--LRLGAAYYYTKDRNDGGGDGKANQVALG 278 (329)
T ss_pred EEEEEEEEEEEccEEEEEEEEEEEccCCCCCCceEEEEEEEeEEEEcCCc--eEEEEEEEEEeccCCCCCCCCeEEEEEE
Confidence 4466666666555555554311 1123455566677776 466666555432 234578888
Q ss_pred EEEeeCCCCeEEEE
Q 024666 205 TQHALDPLTSVKAR 218 (264)
Q Consensus 205 ~~y~ld~~~~~Kak 218 (264)
+.|.+.+.+.+-+-
T Consensus 279 ~~Y~~~~~~~l~~~ 292 (329)
T cd00342 279 ADYALSKRTDLYAE 292 (329)
T ss_pred EeEeeccchhheee
Confidence 88888777655433
No 27
>PRK15318 intimin-like protein SinH; Provisional
Probab=68.36 E-value=1.4e+02 Score=30.33 Aligned_cols=39 Identities=18% Similarity=0.087 Sum_probs=29.0
Q ss_pred eCCcceEeEEEEeecC-CCcceeEEEEEeEEcCCeEEEEE
Q 024666 124 GNNSVALGTDLSFDTA-TGNFTKCNAGLSYTHTDLIASLT 162 (264)
Q Consensus 124 ~~~~~~lG~e~~yd~~-~~~~~~~~~~~~Y~~~d~~~s~~ 162 (264)
-.++|.+|+.+.||.. ++......+|+.|-.+.+.+++.
T Consensus 166 ~~~~wMlG~NaFyD~d~s~~h~R~GlGaE~w~dyLkLsAN 205 (730)
T PRK15318 166 NFGKWLLGGNIFYDYDFTRGHRRLGLGTEAWTDYLKFSGN 205 (730)
T ss_pred eCCCEEEEeEEEEccCCCCCcceeeeeeEEEecceEEEEE
Confidence 4788999999999976 34566778888887666555554
No 28
>PF06178 KdgM: Oligogalacturonate-specific porin protein (KdgM); InterPro: IPR009331 This family consists of several bacterial proteins which are homologous to the oligogalacturonate-specific porin protein KdgM (Q934G3 from SWISSPROT) from Erwinia chrysanthemi. The phytopathogenic Gram-negative bacteria E. chrysanthemi secretes pectinases, which are able to degrade the pectic polymers of plant cell walls, and uses the degradation products as a carbon source for growth. KdgM is a major outer membrane protein, whose synthesis is strongly induced in the presence of pectic derivatives. KdgM behaves like a voltage-dependent porin that is slightly selective for anions and that exhibits fast block in the presence of trigalacturonate. In contrast to most porins, KdgM seems to be monomeric [].; PDB: 2WJQ_A 2WJR_A.
Probab=67.94 E-value=20 Score=31.01 Aligned_cols=78 Identities=14% Similarity=0.060 Sum_probs=48.5
Q ss_pred CCeEEEEEEEEeCCCcceeEEEEEEEeecCCceeEEEEEEEeeCCCCeEEEEEc----------CC--------ceEEEE
Q 024666 167 GDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHALDPLTSVKARVN----------NY--------GRASAL 228 (264)
Q Consensus 167 ~~~~~~Sy~~kv~~~~~~~~g~e~~~~~~~~~~~~~vG~~y~ld~~~~~Kakv~----------s~--------g~v~~~ 228 (264)
+.++.++|..|++++|-++.|..+.+......=..-|-..|.+|++..+-+|-. .+ -++.+-
T Consensus 61 g~E~~~~y~~k~~d~~~l~PG~~~~~~s~~~~yrPylk~~Y~fd~~~~~~~RYRy~~~~~~~~~~~~~~~~~~~~r~d~~ 140 (218)
T PF06178_consen 61 GNEFEISYRYKLNDNFTLQPGFSLESNSDGTQYRPYLKLGYKFDNGLSVSGRYRYDYQNYSSDDLDGDKDNNDRHRFDLW 140 (218)
T ss_dssp EEEEEEEE-EESSSSEEEEEEEEEEEETTEEEEEEEEEEEEEECTTEEEEEEEEEEEESS-EE-TTS-EE---EEEEEEE
T ss_pred eeEEEEEEEEEcCCCEEEecceEEEECCCccEEeeEEEEEEEecCCEEEEEEeecceEccCCcccCCccccCccEEEEEE
Confidence 568999999999998777778777766443223334444566666655544421 11 146666
Q ss_pred EEEeeCCCeEEEEEEE
Q 024666 229 IQHEWRPKSLFTISGE 244 (264)
Q Consensus 229 y~~kl~p~~~l~ls~~ 244 (264)
+-.++.+.+.+.+-..
T Consensus 141 i~Y~~~~~~~~~y~~~ 156 (218)
T PF06178_consen 141 IGYKFNDDWSLSYNPV 156 (218)
T ss_dssp EEEE-SSSEEEEEEEE
T ss_pred EEEEEcCCEEEEEEEE
Confidence 6667777777777766
No 29
>cd00342 gram_neg_porins Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane. Individual 16-strand anti-parallel beta-barrels form a central pore, and trimerizes thru mainly hydrophobic interactions at the interface. Trimers are stabilized by hytrophillic clamping of Loop L2. Loop 3 bends into the pore, creating an elliptical constriction of about 7 x 11A, large enough to allow passage of a glucose molecule without steric hindrance. Removal of the C-terminal residue (usuallly F) destabilizes the trimer and removal of the 16th beta-sheet abolishes trimerization. Unlike typical membrane proteins, porins lack long hydrophobic stretches. Short turns are found at the smooth, periplasmic end, longer irregular loops are found at the rough, extracellular end. C-terminal residue forms salt bridge with N-terminus.
Probab=67.31 E-value=90 Score=27.64 Aligned_cols=101 Identities=15% Similarity=0.105 Sum_probs=61.5
Q ss_pred eeEEEEEeEEcCCeEEEEEEccC---------------CCeEEEEEEEEeCCCcceeEEEEEEEeec--------CCcee
Q 024666 144 TKCNAGLSYTHTDLIASLTLNDK---------------GDTLNASYYHIVSPLTNTAVGAELTHSFS--------SNENT 200 (264)
Q Consensus 144 ~~~~~~~~Y~~~d~~~s~~~~~~---------------~~~~~~Sy~~kv~~~~~~~~g~e~~~~~~--------~~~~~ 200 (264)
..|.+++.|..+.+.+.+..... .+.+.++.-....+ +.+++...+... .....
T Consensus 162 ~~~~~~~~Y~~~~~~l~a~y~~~~~~~~~~~~~~~~~~~~~~~~ga~Y~~~~---~~v~a~y~~~~~~~~~~~~~~~~~~ 238 (329)
T cd00342 162 RGYGAGLSYENGPLSLGAAYDQQRNGGGAAGGAAGATSQRAYGAGASYDFGG---LKLGAGYTNTRNDNGGGGGSAKFNG 238 (329)
T ss_pred ceEEEEEEEccCCEEEEEEEEEeeCCCcccccccccceEEEEEEEEEEEEcc---EEEEEEEEEEEccCCCCCCceEEEE
Confidence 45677777776666665553210 12244444445553 366776655432 12357
Q ss_pred EEEEEEEeeCCCCeEEEEEcC------------CceEEEEEEEeeCCCeEEEEEEEeec
Q 024666 201 LTIGTQHALDPLTSVKARVNN------------YGRASALIQHEWRPKSLFTISGEVDT 247 (264)
Q Consensus 201 ~~vG~~y~ld~~~~~Kakv~s------------~g~v~~~y~~kl~p~~~l~ls~~~d~ 247 (264)
..+|+.|.+.+...+.+-... .-.+.+.+++.+.|.+.+-.....+.
T Consensus 239 ~~lga~Y~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~G~~Y~~~~~~~l~~~y~~~~ 297 (329)
T cd00342 239 YELGATYQLTPALRLGAAYYYTKDRNDGGGDGKANQVALGADYALSKRTDLYAEYGYQK 297 (329)
T ss_pred EEEeEEEEcCCceEEEEEEEEEeccCCCCCCCCeEEEEEEEeEeeccchhheeeeeeee
Confidence 889999999666777664421 23578899999999877776655443
No 30
>PF10082 DUF2320: Uncharacterized protein conserved in bacteria (DUF2320); InterPro: IPR018759 This domain has no known function.
Probab=66.81 E-value=1.1e+02 Score=28.20 Aligned_cols=79 Identities=19% Similarity=0.249 Sum_probs=53.9
Q ss_pred eeEEEEEEEeecCCceeEEEEEEEeeCCCCeEEEEEcCCceEEEEEEEeeCCCeEEEEEEEeeccccCC------CceeE
Q 024666 184 TAVGAELTHSFSSNENTLTIGTQHALDPLTSVKARVNNYGRASALIQHEWRPKSLFTISGEVDTRAIEK------SAKIG 257 (264)
Q Consensus 184 ~~~g~e~~~~~~~~~~~~~vG~~y~ld~~~~~Kakv~s~g~v~~~y~~kl~p~~~l~ls~~~d~~~~~~------~~K~G 257 (264)
..+.+.+.|.+. +.+.+++.+...+.+....-+--...-.+++.+.|++.+++++.+++.....+..+ .+.+|
T Consensus 259 ~~~~~~l~w~pt-~~t~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~h~~~~~l~~~~~~~~~~~~y~~~~r~D~~~~~~ 337 (381)
T PF10082_consen 259 PSWDASLTWSPT-PKTTVTLSASRSIEESTDAGGSYVRTTSVSLGWTHQLTPRLSLSLSAGYENRDYQGSDREDDTYSAG 337 (381)
T ss_pred eEEEEEEEEecc-CceEEEEEEEEEEcCcccCCCcEEEEEEEEEEEEEEeeeeEEEEEEEEEEEeEcCCCCceeeEEEEE
Confidence 456666777764 45778888877774443333333334568888999999999999999988876531 25666
Q ss_pred EEEEEe
Q 024666 258 LALALK 263 (264)
Q Consensus 258 ~gl~l~ 263 (264)
+++...
T Consensus 338 ~~~~y~ 343 (381)
T PF10082_consen 338 LGLTYR 343 (381)
T ss_pred EEEEEE
Confidence 666554
No 31
>PF13557 Phenol_MetA_deg: Putative MetA-pathway of phenol degradation
Probab=60.71 E-value=1e+02 Score=26.08 Aligned_cols=37 Identities=8% Similarity=0.012 Sum_probs=22.2
Q ss_pred eEEEEEEEeeCCCeEEEEEEEeeccccCCCceeEEEEEE
Q 024666 224 RASALIQHEWRPKSLFTISGEVDTRAIEKSAKIGLALAL 262 (264)
Q Consensus 224 ~v~~~y~~kl~p~~~l~ls~~~d~~~~~~~~K~G~gl~l 262 (264)
.++......+.|++.+.++...+.. ....-.|.++.+
T Consensus 210 ~~~~gv~y~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~ 246 (248)
T PF13557_consen 210 YLGPGVSYQLSPNLSLDAGVGRGLA--ARNTFEGNGVQL 246 (248)
T ss_pred EEEEEEEEEEcCCeEEEEEEEeeee--ccceeeeeEEEE
Confidence 3666667777777777666666663 334455555544
No 32
>PF05275 CopB: Copper resistance protein B precursor (CopB); InterPro: IPR007939 This family consists of several bacterial copper resistance proteins. Copper is essential and serves as a cofactor for more than 30 enzymes yet a surplus of copper is toxic and leads to free radical formation and oxidation of biomolecules. Therefore, copper homeostasis is a key requisite for every organism. CopB serves to extrude copper when it approaches toxic levels [] and has been shown to act as an ATPase (3.6.1.3 from EC).; GO: 0005507 copper ion binding, 0006878 cellular copper ion homeostasis, 0009279 cell outer membrane
Probab=59.04 E-value=1.2e+02 Score=26.20 Aligned_cols=78 Identities=17% Similarity=0.197 Sum_probs=53.4
Q ss_pred eEEEEEEEEeCCCcceeEEEEEEEeecCCceeEEEEEEEeeCC---CCeEEEEEcCCceEE----EEEEEeeCCCeEEEE
Q 024666 169 TLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHALDP---LTSVKARVNNYGRAS----ALIQHEWRPKSLFTI 241 (264)
Q Consensus 169 ~~~~Sy~~kv~~~~~~~~g~e~~~~~~~~~~~~~vG~~y~ld~---~~~~Kakv~s~g~v~----~~y~~kl~p~~~l~l 241 (264)
.+.+-|-|-++|=|.+++|+...+......+-..+|.+--. | .+-..+-|+++|.++ +.|+..|...+.|.=
T Consensus 56 e~q~lysr~is~fwd~q~GvR~d~~~~~~r~~~~iG~qGLA-PY~FE~da~lyvs~~G~~~~r~e~eydlllTqrLiLqP 134 (210)
T PF05275_consen 56 EIQALYSRAISPFWDVQAGVRYDFRPGPDRTWAVIGVQGLA-PYWFEVDATLYVSEDGDVAARLEAEYDLLLTQRLILQP 134 (210)
T ss_pred eeeeecccccCccceEEEEeEeecCCCCCceEEEEEEEEcC-cceEeeeeeEEEcCCCcEEEEEEEEeeeeeeeeEEEEE
Confidence 57888999999998899999888877656677888876332 1 233456688888654 445555555555555
Q ss_pred EEEeec
Q 024666 242 SGEVDT 247 (264)
Q Consensus 242 s~~~d~ 247 (264)
..|++.
T Consensus 135 ~~E~~~ 140 (210)
T PF05275_consen 135 RLEANA 140 (210)
T ss_pred eEEEEE
Confidence 555544
No 33
>PF11383 DUF3187: Protein of unknown function (DUF3187); InterPro: IPR021523 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=57.73 E-value=1.5e+02 Score=27.10 Aligned_cols=97 Identities=18% Similarity=0.140 Sum_probs=61.9
Q ss_pred CCcceEeEEEEeecCCC-cc-----e--eEEEEEeEEcC-CeEEEEEE-----c-----------cCCCeEEEEEEEEeC
Q 024666 125 NNSVALGTDLSFDTATG-NF-----T--KCNAGLSYTHT-DLIASLTL-----N-----------DKGDTLNASYYHIVS 179 (264)
Q Consensus 125 ~~~~~lG~e~~yd~~~~-~~-----~--~~~~~~~Y~~~-d~~~s~~~-----~-----------~~~~~~~~Sy~~kv~ 179 (264)
...+++|+.+.|.+.+. .+ . ...+..+|+.+ +|....++ . +.--...++|=.+++
T Consensus 170 ~~~lslg~slk~~t~d~~~~~GSGs~d~~l~ln~s~~~~~~~~~~~~~G~~~~~~~~~l~~~~~~~~~~~~~~g~~y~~~ 249 (319)
T PF11383_consen 170 HHGLSLGGSLKYPTGDSGRFTGSGSFDQALQLNYSYRYGSKHSLYATLGYTFRGDSDVLEGIPYRNNTWFGGLGYGYQLT 249 (319)
T ss_pred CceEEEEEEEEecCCCcccccCCccccceEEEEeeeccCCcceeeeeeeEEEecCcccccccccccceEEEEEEEEEEec
Confidence 56788888888887531 11 1 12233344444 55443332 1 101124667888999
Q ss_pred CCcceeEEEEEEEeec---------CCceeEEEEEEEeeCCCCeEEEEEcCCc
Q 024666 180 PLTNTAVGAELTHSFS---------SNENTLTIGTQHALDPLTSVKARVNNYG 223 (264)
Q Consensus 180 ~~~~~~~g~e~~~~~~---------~~~~~~~vG~~y~ld~~~~~Kakv~s~g 223 (264)
|+ ..+-+|+.+... +..+.+++|++|.+.+.+.+-.-+-.|.
T Consensus 250 ~~--~~l~~q~~~~qg~~~~~~~l~~~s~e~~lG~r~~~~~~~alei~~~En~ 300 (319)
T PF11383_consen 250 EN--HSLLAQYDYYQGFYDSSSELSEPSNELTLGYRYQLSERSALEISVIENL 300 (319)
T ss_pred CC--EEEEEEEEEeeccccCchhhcccceEEEeeeEEEEcCCceEEEEEEecc
Confidence 99 688888888743 3467899999999977887777776665
No 34
>PF14052 Caps_assemb_Wzi: Capsule assembly protein Wzi
Probab=57.23 E-value=1e+02 Score=29.34 Aligned_cols=43 Identities=14% Similarity=-0.027 Sum_probs=30.6
Q ss_pred CCceEEEEEE-EeeCCCeEEEEEEEeeccccC-CCceeEEEEEEe
Q 024666 221 NYGRASALIQ-HEWRPKSLFTISGEVDTRAIE-KSAKIGLALALK 263 (264)
Q Consensus 221 s~g~v~~~y~-~kl~p~~~l~ls~~~d~~~~~-~~~K~G~gl~l~ 263 (264)
....+.+.|+ ..+.+.+.+.++...|.-++. ....+|++|.++
T Consensus 398 ~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~~~~~~~~~g~~l~~~ 442 (443)
T PF14052_consen 398 FSFYLELSYQSPSLNGGWSLGASVGYDNGDIPLYDDNFGAGLSVR 442 (443)
T ss_pred EEEEEEEEEEcccccCCEEEEEEEEEecccccccCCCCCcEEEEe
Confidence 3445677774 777889999999999987552 356667776654
No 35
>PRK10993 outer membrane protease; Reviewed
Probab=57.04 E-value=1.6e+02 Score=27.03 Aligned_cols=211 Identities=12% Similarity=0.050 Sum_probs=107.7
Q ss_pred cceeecceEEEEEeeeeCCceeEEE-EEEEEeeC-ceEE-EEEEcCCCc--EEEEEEEecCCCCeEEEEEEE--ecCCCC
Q 024666 19 NALLVMHLQAITSSGVKKGELFLAD-VSTQLKNK-NITT-DVKVDTNSN--LFTTITVDEPAPGLKSIFSFI--VPDQRS 91 (264)
Q Consensus 19 ~~f~~~~~v~~~s~~~~~~~~~~g~-l~~~y~~~-~~~l-~~~~~t~g~--l~~~i~~~~~~~glk~~~~~~--~p~~~~ 91 (264)
+.| .+..|+++.. .+.++|. -|--|... +--+ +-.|.-+|. |.+++..+ +.|.|.+..+.. ++....
T Consensus 27 ~~~-~~~~~s~~~s----~G~l~gks~E~VY~~~~g~kvSqLdW~~~n~~iik~~~~~~-~~~~lsl~a~gw~~l~s~~G 100 (314)
T PRK10993 27 FDV-TPDNVSVSIS----LGTLSGKSKELVYDEEGGRKLSQLDWKIKNAAIIKGDINWD-LLPRLSLGASGWTTLASGGG 100 (314)
T ss_pred ccc-CCCcEEEEee----eeeEeccceeEEecCCCCcEEEEeeccccCceEEEeecccc-cccceEEeeeEEEEEecCCC
Confidence 334 5566666532 2333332 45456211 1122 345665555 55555555 899998888755 332111
Q ss_pred ceeEEE--------EeecceeeeEEEeccCCCeEEEEEEE-eCCcceEeEEEEeecCCCcceeEEEEEeEE--cC---Ce
Q 024666 92 GKVELQ--------YQHEYAGISTGIGFTANPIVNFSGVV-GNNSVALGTDLSFDTATGNFTKCNAGLSYT--HT---DL 157 (264)
Q Consensus 92 ~k~~~~--------y~~~~~~~~~~v~l~~~P~~~~s~v~-~~~~~~lG~e~~yd~~~~~~~~~~~~~~Y~--~~---d~ 157 (264)
.+..-+ |.+...+-+++++--..-+++...-+ .-++..+|.-+.|+...-+ -.+.|+.|. .. +.
T Consensus 101 ~M~DyDWl~~~~~~wt~~S~h~~t~l~ya~e~dln~~~w~l~~~~yklG~~aGyqy~~~s--w~A~GG~y~Y~~~~~r~~ 178 (314)
T PRK10993 101 HMVDYDWLDSSQPGWTDRSHHPDTDLNYANEFDLNLKGWLLQNPNYRLGVMAGYQETRFS--WTAYGGSYIYSNGGFRDD 178 (314)
T ss_pred ccccccccCCCCCCCcceecCCCCchhhhhhcceecceeeecCCCceeeeEeeeEEEece--eEccCceEEcCCCCCCCC
Confidence 111111 33333332333321122234443433 6788889998888875433 334444443 33 22
Q ss_pred EEEEEEccCCCeEEEEEEEEeCCCcceeEEEEEEEeecCCceeEEEEEEEee-----------CCCCeEEEEEcCCceE-
Q 024666 158 IASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHAL-----------DPLTSVKARVNNYGRA- 225 (264)
Q Consensus 158 ~~s~~~~~~~~~~~~Sy~~kv~~~~~~~~g~e~~~~~~~~~~~~~vG~~y~l-----------d~~~~~Kakv~s~g~v- 225 (264)
+.+ +-+ .....+|-|+..-- -+|...++... .-.+....+|.. .++.++|-++++.-..
T Consensus 179 ~g~--fPd--~~~~I~Y~Q~f~~p---yiGL~g~y~~~--~~ef~~~~kys~wv~a~d~D~H~lR~ltF~d~~~~s~y~~ 249 (314)
T PRK10993 179 IGT--FPD--GERGIGYKQRFKMP---YIGLTGSYRYD--DFEFGGLLKYSGWVSASDNDEHYLRNLTFRDKFKNSPYYS 249 (314)
T ss_pred ccc--cCC--CccceeeEEEecce---eeeEEEEEEec--cEEEeeEeecceeEeecccchhhcccccchhcccCCceeE
Confidence 222 333 36778999998754 44555555543 233333333322 1446666666554443
Q ss_pred -EEEEEEeeCCCeEEEEEEEee
Q 024666 226 -SALIQHEWRPKSLFTISGEVD 246 (264)
Q Consensus 226 -~~~y~~kl~p~~~l~ls~~~d 246 (264)
.+.....+.|.+++-+++...
T Consensus 250 l~~~agY~vTp~~~v~v~~~y~ 271 (314)
T PRK10993 250 ASINAGYYVTPNAKLYVEGAYN 271 (314)
T ss_pred EEEEEeEEeCCCeEEEEEEEEE
Confidence 566666888888888777654
No 36
>PRK03761 LPS assembly outer membrane complex protein LptD; Provisional
Probab=51.79 E-value=2.9e+02 Score=28.49 Aligned_cols=99 Identities=11% Similarity=0.054 Sum_probs=64.3
Q ss_pred eCCcceEeEEEEeecCCCcceeEEEEEeEEcCCe-EEEEEEc---------------------cCCCeEEEEEEEEeCCC
Q 024666 124 GNNSVALGTDLSFDTATGNFTKCNAGLSYTHTDL-IASLTLN---------------------DKGDTLNASYYHIVSPL 181 (264)
Q Consensus 124 ~~~~~~lG~e~~yd~~~~~~~~~~~~~~Y~~~d~-~~s~~~~---------------------~~~~~~~~Sy~~kv~~~ 181 (264)
..+.|.+.+++.||.....+.+.++.++|+.++. .+.+... .....+.+|...+++++
T Consensus 611 ~~~~~~~~~~~~~d~~~~~~~r~~~~l~y~~~~~~~~~~~Yry~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~ 690 (778)
T PRK03761 611 ISDRWGLRGGIQYDTRLDSVALANSSLEYRRDEDRLIQLNYRYASPEYIQATLPSYYSAEIYQQGISQVGAVASWPIADR 690 (778)
T ss_pred ecCCEEEeeeEEECCCCChhheEEEEEEEeCCCCcEEEeEeEEecchhhhcccccccccccccCCcceeeEEEEEEecCc
Confidence 4788999999999998888888888888876654 3232210 00124666777778888
Q ss_pred cceeEEEEEEEeecCC-ceeEEEEEEEeeCCCCeEEEEEcCCceEEEEEEEeeCC
Q 024666 182 TNTAVGAELTHSFSSN-ENTLTIGTQHALDPLTSVKARVNNYGRASALIQHEWRP 235 (264)
Q Consensus 182 ~~~~~g~e~~~~~~~~-~~~~~vG~~y~ld~~~~~Kakv~s~g~v~~~y~~kl~p 235 (264)
| .+.+...|++..+ .....+|.+|+=+ =|.+.++|++.+.+
T Consensus 691 w--~~~g~~~ydl~~~~~~~~~~Gl~Y~~~-----------Cw~~~~~~~r~~~~ 732 (778)
T PRK03761 691 W--SIVGAYYYDTKANKPAEQLLGLQYNSC-----------CWAIGVGYERKLTG 732 (778)
T ss_pred E--EEEEEEEeeCcCChhhhhhcCeeecCc-----------eEEEEEEEEEEecc
Confidence 4 7777777776543 3445566666431 14466677777644
No 37
>PRK09980 ompL outer membrane porin L; Provisional
Probab=49.93 E-value=75 Score=27.76 Aligned_cols=52 Identities=8% Similarity=0.100 Sum_probs=29.5
Q ss_pred CCeEEEEEE-EEeCCCcceeEEEEEEEeecCCceeEEEEEEEeeCCCCeEEEE
Q 024666 167 GDTLNASYY-HIVSPLTNTAVGAELTHSFSSNENTLTIGTQHALDPLTSVKAR 218 (264)
Q Consensus 167 ~~~~~~Sy~-~kv~~~~~~~~g~e~~~~~~~~~~~~~vG~~y~ld~~~~~Kak 218 (264)
+.++.++|- .|+++++-++-|.-+........=..-|-++|.++++..+.+|
T Consensus 71 ~~E~~~sY~~~k~~d~~tl~PG~~~~s~s~~~~Y~PyLr~~y~f~~~~~~~~R 123 (230)
T PRK09980 71 YNEIEGWYPLFKPTDKLTIQPGGLINDKSIGSGGAVYLDVNYKFTPWFNLTVR 123 (230)
T ss_pred ceEEEEEEEeEecCCCEEEecceEEEecCCCceEeeEEEEEEEECCCeEEEEE
Confidence 568888995 5999987666666655554322222223344555444444433
No 38
>PRK14574 hmsH outer membrane protein; Provisional
Probab=48.31 E-value=3.4e+02 Score=28.33 Aligned_cols=168 Identities=12% Similarity=0.011 Sum_probs=87.1
Q ss_pred eEEEEeecceeeeEEEec---cC--CCeEEEEEEE-eCCcceEeEEEEeecCCC---------cceeEEEEEeEEcCC--
Q 024666 94 VELQYQHEYAGISTGIGF---TA--NPIVNFSGVV-GNNSVALGTDLSFDTATG---------NFTKCNAGLSYTHTD-- 156 (264)
Q Consensus 94 ~~~~y~~~~~~~~~~v~l---~~--~P~~~~s~v~-~~~~~~lG~e~~yd~~~~---------~~~~~~~~~~Y~~~d-- 156 (264)
++++|..-+..+.+.+.- .. .+-..++..+ ....|.+|+++.++...- ....+.+.++|+..+
T Consensus 595 ~G~e~~~r~~~~~~e~~~~~~g~g~k~g~r~~~~~~~nD~W~~~~~~~~~~~~tPlrA~~~gv~~~~~~~~~~yr~~e~r 674 (822)
T PRK14574 595 LGGEWTSRDHWVEGEISNQNYGNGNKVGARLSTWYDLNDHWRVGGQVERLAKDTPLRALKNKVTANSASAYVFWKADDKR 674 (822)
T ss_pred ccceEEecCceEEEEeehhhcCCCCCcCceEEEEecCCCceeeeeeeecCCCCCCHHHHHcCCcceecceEEEEEEccce
Confidence 455556555555553321 11 2223344444 578888888888754321 123566777886543
Q ss_pred -eEEEEEEc---c--CCCeEEEEEEEEe--CCCcceeEEEEEEEeecC----------Ccee--EEEEEEEee--CCC--
Q 024666 157 -LIASLTLN---D--KGDTLNASYYHIV--SPLTNTAVGAELTHSFSS----------NENT--LTIGTQHAL--DPL-- 212 (264)
Q Consensus 157 -~~~s~~~~---~--~~~~~~~Sy~~kv--~~~~~~~~g~e~~~~~~~----------~~~~--~~vG~~y~l--d~~-- 212 (264)
|.+++... | .-+.+.++..|++ +|++.+....++.+...+ ++.+ .++...|.+ +-+
T Consensus 675 ~~~~~~~~~~fsDgN~R~~~~~~~~~rl~~~p~~~~d~~~~~~~s~Ns~~~~~YfNP~~d~s~~~~l~~~~~~~r~y~~~ 754 (822)
T PRK14574 675 DAELSVTPSRFSDGNNRWEYEFNGRQRIWTGPYLTADFNLGLAASQNSKEDVIYYNPKRDFAYVPAVTLNHIMYRRYKTI 754 (822)
T ss_pred EEEeeeeecccCCCchhhhhhcceeEEeecCCeEEEecceEEeeccCCCCCCCccCcchhcccCcccceeeeeeeecccc
Confidence 33444332 2 1133556666663 355444445555554331 1111 223333333 111
Q ss_pred --CeEEEEEcC--------CceEEEEEEEee--CCCeEEEEEEEeeccccCCCceeEEEEE
Q 024666 213 --TSVKARVNN--------YGRASALIQHEW--RPKSLFTISGEVDTRAIEKSAKIGLALA 261 (264)
Q Consensus 213 --~~~Kakv~s--------~g~v~~~y~~kl--~p~~~l~ls~~~d~~~~~~~~K~G~gl~ 261 (264)
..+++-+.. ....++.|+|++ ++.+.+..+...+-.-.+|..-.+.++.
T Consensus 755 ~~Q~l~~~~G~Y~Q~~f~~~~~~~~~Y~h~w~~~~~~~~~ygi~~~~~~YDG~~E~~~~~~ 815 (822)
T PRK14574 755 WSQQVQLGVGGYWEKNYGNGLVTTAGYGQRVQWNDVIDTGVAVVYDKRPYDGKREHDVTLS 815 (822)
T ss_pred eeEEEEecccchhhcccCCCCcceeeeeeEEEECCceeEEEEEEecCCCCCCCcccCceEE
Confidence 345555443 444888888876 5788888888887653466555444443
No 39
>TIGR03509 OMP_MtrB_PioB decaheme-associated outer membrane protein, MtrB/PioB family. Members of this protein family are integral proteins of the bacterial outer membrane, associated with multiheme c-type cytochromes involved in electron transfer. The MtrB protein of Shewanella oneidensis MR-1 (SO1776) has been shown to form a complex with 1:1:1 stochiometry with the small, periplasmic decaheme cytochrome MtrA and large, surface-exposed decaheme cytochrome MtrC.
Probab=47.79 E-value=3.1e+02 Score=27.64 Aligned_cols=176 Identities=13% Similarity=0.087 Sum_probs=0.0
Q ss_pred eEEEEEEEecCCCCceeEEEEeecceeeeEEEecc--CCCeEEEEEEE-eCCcceEeEEEEeecCCCcceeEEEEEeEEc
Q 024666 78 LKSIFSFIVPDQRSGKVELQYQHEYAGISTGIGFT--ANPIVNFSGVV-GNNSVALGTDLSFDTATGNFTKCNAGLSYTH 154 (264)
Q Consensus 78 lk~~~~~~~p~~~~~k~~~~y~~~~~~~~~~v~l~--~~P~~~~s~v~-~~~~~~lG~e~~yd~~~~~~~~~~~~~~Y~~ 154 (264)
+++.+.-..-+.-..-+...|..++.. +..+++. ..--++.++-+ ..+.|.+.+.+.|+........- -.+..
T Consensus 447 ~elg~~y~~~~~lsl~~~~~~~~ddy~-~~~lg~~~s~~~gv~l~~~~~~s~~l~l~a~~~~~~~~~e~~~s---~~~~~ 522 (649)
T TIGR03509 447 LKAFADYQPTEGLTLGATARYAKDDYP-DTLIGLTESTDYGYDLDASYTFTDGLSLHAFYNQQWIDSNQAGS---ATYST 522 (649)
T ss_pred eEeccEEeecCCeEEEEEEEEeccCcc-ccccCcccceeeeEEEEEEEEeCCCeEEEEEEEEEEeEhhhccC---CCccC
Q ss_pred CCeEEEEEEccCCCeEEEEEEEEeC--CCcceeEEEEEEEeecCCc------------------eeEEEEEEEeeCCCCe
Q 024666 155 TDLIASLTLNDKGDTLNASYYHIVS--PLTNTAVGAELTHSFSSNE------------------NTLTIGTQHALDPLTS 214 (264)
Q Consensus 155 ~d~~~s~~~~~~~~~~~~Sy~~kv~--~~~~~~~g~e~~~~~~~~~------------------~~~~vG~~y~ld~~~~ 214 (264)
++| .....++-..+.+..-+... ++ +.+++.+.|....-+ ..+.++++|+++++..
T Consensus 523 ~~w--~~~~~D~~~~~Glgl~~~~~~~~~--LsL~~~ysY~~~~~Dt~~g~~~~~~~pdy~~~~~~l~l~a~Y~~~~~l~ 598 (649)
T TIGR03509 523 PDW--TSDTTDSVTTIGAGLTYEGLLDLK--LSLGGDYSYSNGDSDYKSTTNTGGPYPDYFSNQHRLKLYGKYQLSKSSS 598 (649)
T ss_pred ccc--cccccceeeEEEEEeEeccccCCc--EEEeeeEEEecCCCcceecccccccCCcccceEEEEEEEEEEecCCCeE
Q ss_pred EEEEEcCCceEEEEEE-EeeCC--CeEEEEEEEeeccccCCCceeEEEEEEe
Q 024666 215 VKARVNNYGRASALIQ-HEWRP--KSLFTISGEVDTRAIEKSAKIGLALALK 263 (264)
Q Consensus 215 ~Kakv~s~g~v~~~y~-~kl~p--~~~l~ls~~~d~~~~~~~~K~G~gl~l~ 263 (264)
+++.+...-...-=|+ ..+.+ ...+..=|.++|. =..|.+|+.+..+
T Consensus 599 l~l~~~~eny~d~Dy~~~~~~~~~~~~~~~~g~~~~~--Y~ah~~~~s~~y~ 648 (649)
T TIGR03509 599 LRLDYRYERYSDNDYAYNNTAYDTIATVTTLGDQNPN--YNAHYLGVSYSYL 648 (649)
T ss_pred EEEEEEEEEEeecchhhcCCCcccccccccccccCCC--ceeeEEEEEEEEe
No 40
>PF11924 DUF3442: Protein of unknown function (DUF3442); InterPro: IPR024519 This domain is found in uncharacterised proteins, as well as intimin and invasin proteins. Intimin is believed to mediate adherence and it is necessary for the production of attaching and effacing lesions on tissue culture cells []. Invasin is a protein that allows enteric bacteria to penetrate cultured mammalian cells []. The entry of invasin in the cell is mediated by binding several beta-1 chain integrins [].; PDB: 4E1T_A 4E1S_A.
Probab=46.69 E-value=52 Score=29.46 Aligned_cols=38 Identities=13% Similarity=0.202 Sum_probs=26.8
Q ss_pred ceEEEEEEEeeCCCeEEEEEEEeecccc-CCCceeEEEEEE
Q 024666 223 GRASALIQHEWRPKSLFTISGEVDTRAI-EKSAKIGLALAL 262 (264)
Q Consensus 223 g~v~~~y~~kl~p~~~l~ls~~~d~~~~-~~~~K~G~gl~l 262 (264)
+.+|+.|.+ +++.+-+.+-+.+|+ ++ .+.+++|+|+++
T Consensus 95 ~N~GlG~R~-~~~~~~~G~N~FyD~-~~~~~~~R~~~G~E~ 133 (280)
T PF11924_consen 95 GNLGLGYRH-LNDNWMLGYNAFYDY-DFSRNHQRLGLGAEY 133 (280)
T ss_dssp EEEEEEEEE-EETTEEEEEEEEEEE-ETTTTEEEEEEEEEE
T ss_pred EEEeEEEEe-cCCCeEEEeEEEEec-CCCCCcceeeeeeEe
Confidence 446777777 567777888888888 44 345688888875
No 41
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=45.83 E-value=3.5e+02 Score=27.75 Aligned_cols=113 Identities=12% Similarity=0.002 Sum_probs=0.0
Q ss_pred EEEEeecCCCcceeEEEEEeEEcCCeEEEEEEc----cCCCe--EEEEEEEEeCCCcceeEEEEEEEeec----------
Q 024666 132 TDLSFDTATGNFTKCNAGLSYTHTDLIASLTLN----DKGDT--LNASYYHIVSPLTNTAVGAELTHSFS---------- 195 (264)
Q Consensus 132 ~e~~yd~~~~~~~~~~~~~~Y~~~d~~~s~~~~----~~~~~--~~~Sy~~kv~~~~~~~~g~e~~~~~~---------- 195 (264)
....|+..+.....+-+|+.|+..+..+.+.+. ..+.. .+.+..+.+||.| .+++++..+..
T Consensus 522 ~~~~~~~~~~~~~~~g~G~e~~~~~~~~e~~~~~~~~~~~~~~g~~~~~~~~~nd~w--~~~~~~~~~~~~~plra~~~~ 599 (765)
T PRK10049 522 ADGQFSEGKGIVRDWLAGVEWRSRDIWLEAELSERVFGHEHKPGARLSGWYDFNDNW--RIGGSLERLSHRTPLRALKNG 599 (765)
T ss_pred eeccCCCCceeEEEEeeeeEEEecceeEEEEeeccccCCCCCcccEEEeeeccCCCe--eeeceeecCCCCCCHHHHHcC
Q ss_pred CCceeEEEEEEEeeCCCCeEEEEEcCCce--------EEEEEEEee--CCCeEEEEEEEee
Q 024666 196 SNENTLTIGTQHALDPLTSVKARVNNYGR--------ASALIQHEW--RPKSLFTISGEVD 246 (264)
Q Consensus 196 ~~~~~~~vG~~y~ld~~~~~Kakv~s~g~--------v~~~y~~kl--~p~~~l~ls~~~d 246 (264)
-....+.++..|.-++...+...+.-.-. +++..+++| .|.+++.+...++
T Consensus 600 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~fsD~N~r~~~~~~~~~~~~~~p~~~~~~~~~~~ 660 (765)
T PRK10049 600 VTANGGQGYVRWYQNERREYGVSWAFSDFSDGNRRQEYSLSGQERLWSSPYLIVDFLPSLY 660 (765)
T ss_pred CccccceEEEEEeEcceEEEEeeeeeecccCCchhhheeceeeEEeecCCeEEEeeceEEe
No 42
>PF01278 Omptin: Omptin family; InterPro: IPR000036 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belongs to the MEROPS family A26 (clan AF). The omptin family, comprises a number of novel outer membrane-associated serine proteases that are distinct from trypsin-like proteases in that they cleave polypeptides between two basically-charged amino acids []. The enzyme is sensitive to the serine protease inhibitor diisopropylfluoro-phosphate, to divalent cations such as Cu2+, Zn2+ and Fe2+ [], and is temperature regulated, activity decreasing at lower temperatures [, ]. Temperature regulation is most prominently shown in the Yersinia pestis coagulase/fibrinolysin protein, where coagulase activity is prevalent below 30 degrees Celsius, and fibrinolysin (protease) activity is prevalent above this point, the optimum temperature being 37 degrees []. It is possible that this assists in 'flea blockage' and transmission of the bacteria to animals []. The Escherichia coli OmpT has previously been classified as a serine protease with Ser(99) and His(212) as active site residues. The X-ray structure of the enzyme is inconsistent with this classification, and the involvement of a nucleophilic water molecule that is activated by the Asp(210)/His(212) catalytic dyad classifies this as a aspartic endopeptidase where activity is also strongly dependent on Asp(83) and Asp(85). Both may function in binding of the water molecule and/or oxyanion stabilisation. The proposed mechanism implies a novel proteolytic catalytic site [, ].; GO: 0004175 endopeptidase activity, 0006508 proteolysis, 0009279 cell outer membrane; PDB: 1I78_A 2X4M_C 2X55_A 2X56_A 4DCB_A.
Probab=45.47 E-value=2.3e+02 Score=25.60 Aligned_cols=206 Identities=11% Similarity=0.055 Sum_probs=108.7
Q ss_pred cceEEEEEeeeeCCceeEEE-EEEEEeeC--c-eEEEEEEcCCCc--EEEEEEEecCCCCeEEEEEEE--ecCCCCceeE
Q 024666 24 MHLQAITSSGVKKGELFLAD-VSTQLKNK--N-ITTDVKVDTNSN--LFTTITVDEPAPGLKSIFSFI--VPDQRSGKVE 95 (264)
Q Consensus 24 ~~~v~~~s~~~~~~~~~~g~-l~~~y~~~--~-~~l~~~~~t~g~--l~~~i~~~~~~~glk~~~~~~--~p~~~~~k~~ 95 (264)
+..|.+.... +.+.|. =|--|..+ + .--+-.|..+|. |.++++.+ +.+++.+.++.. +|.....+-.
T Consensus 8 ~~~~S~~~s~----G~l~Gka~E~VY~~~~~g~klSqLdW~~~n~~il~~~~~~~-~~~~l~l~~~g~~~~~~~sG~M~D 82 (294)
T PF01278_consen 8 PESFSFSTSL----GVLNGKAKEYVYDPDETGRKLSQLDWKIKNVPILKADISWD-LMPWLSLGASGWTGLPSGSGNMED 82 (294)
T ss_dssp TTCEEEEEEE----EEEEEEEEEEEEECCCTTEEEEEEEEEEEEEEEEEEEEEEE-CCTTEEEEEEEEEESSSEEEEEEE
T ss_pred CCcEEEEEEe----eeEeceeeEEEEcCCCCCcEEeEEecccCCceEEEEEEEEE-ecCCEEEEEEEEEEecCCCCcEEe
Confidence 4446555431 333333 34455542 2 333567888888 66777666 788988887666 3431122222
Q ss_pred EEEe-------------ecceeeeEEEeccCCCeEEEEEEE-eCCcceEeEEEEeecCCCcceeEEEEEeEEcCC---eE
Q 024666 96 LQYQ-------------HEYAGISTGIGFTANPIVNFSGVV-GNNSVALGTDLSFDTATGNFTKCNAGLSYTHTD---LI 158 (264)
Q Consensus 96 ~~y~-------------~~~~~~~~~v~l~~~P~~~~s~v~-~~~~~~lG~e~~yd~~~~~~~~~~~~~~Y~~~d---~~ 158 (264)
-++. |+...++... .-+++....+ ..+++.+|..+.|+....+.+.+.-...|..+. +.
T Consensus 83 ~DWl~~~~~~~~T~~S~H~~t~l~~~~----~~dl~~~~~~~~~~~~~i~~~aGyqy~~~~w~A~gG~y~Y~~~~~~~~~ 158 (294)
T PF01278_consen 83 YDWLNPDQPDDWTHFSHHPDTRLNYAN----EFDLNIKYWFLKEPNYRIGPMAGYQYTRFSWTAYGGYYQYSNGGFRDSS 158 (294)
T ss_dssp EE---TTSTTS-SEEEEECCEEEEEEE----EEEEEEEEEEEEETTEEEEEEEEEEEEEEEEEEES-EEEETTTTSS-EE
T ss_pred ecccCCCCCCCCcccccCCcchhhhhh----eeeeeeeEEEEcCCCEEEEEEcceEEEEeeEEeCCceEECCCCCccccc
Confidence 2222 3322222211 1123444444 588889999999887644444444434454444 32
Q ss_pred EEEEEccCCCeEEEEEEEEeCCCcceeEEEEEEEeecCCceeEEEEEEEee-----------CCCCeEEEEEcCCce--E
Q 024666 159 ASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHAL-----------DPLTSVKARVNNYGR--A 225 (264)
Q Consensus 159 ~s~~~~~~~~~~~~Sy~~kv~~~~~~~~g~e~~~~~~~~~~~~~vG~~y~l-----------d~~~~~Kakv~s~g~--v 225 (264)
.. .-+ +.-..+|=|++.== -+|.++.|... .-.++...+|.. -++.+++-++++..- +
T Consensus 159 g~--fP~--~~~~IsY~Q~f~~p---yiGL~~~yr~~--~~~ls~~~k~s~~v~a~d~D~H~lR~l~F~d~~~~~~~~~~ 229 (294)
T PF01278_consen 159 GT--FPD--GEKGISYKQRFPMP---YIGLAGSYRYN--RFELSASLKYSPWVRANDNDEHYLRNLTFRDKMKNSNYYSL 229 (294)
T ss_dssp EE----T--T-CEEEEEEEEEEE---EEEEEEEEEET--TEEEEEEEEEEEEEEEEEEEEECCCTEEEEEEEEEEEEEEE
T ss_pred cc--CCC--CcceeeeeeEEEEE---EEeEEEEEEcC--CEEEEEEEEEeEEeEeecchhHhhccCcchhhcCCcceEEE
Confidence 22 222 23456888876533 45666666543 233333333321 256777777766444 3
Q ss_pred EEEEEEeeCCCeEEEEEEEeec
Q 024666 226 SALIQHEWRPKSLFTISGEVDT 247 (264)
Q Consensus 226 ~~~y~~kl~p~~~l~ls~~~d~ 247 (264)
++.....+.|.+++-+.+..+.
T Consensus 230 ~~~~~Y~~tp~~~l~~e~~y~~ 251 (294)
T PF01278_consen 230 SLNAGYYLTPNASLFVEGSYNK 251 (294)
T ss_dssp EEEEEEECCTTEEEEEEEEEEE
T ss_pred EEEEEEEeCCCeEEEEEEEEEE
Confidence 4555667888888888876653
No 43
>TIGR03014 EpsL exopolysaccharide biosynthesis operon protein EpsL. The epsL gene is described as a component of the methanolan exopolysaccharide biosynthesis operon in Methylobacillus sp strain 12S, although no other information regarding its possible function is suggested. Homologs of this gene are found in several other exopolysaccharide operons in a small number of species. These operons contain a subset of the methanolan operon genes by homology and synteny, including the epsH gene which is proposed to act as an "exosortase" directing proteins with a C-terminal tag (PEP-CTERM) to the exopolysaccharide layer. Each of the genomes in which these genes and epsL are found also encode genes with these C-terminal tags.
Probab=44.90 E-value=2.6e+02 Score=26.03 Aligned_cols=109 Identities=10% Similarity=0.000 Sum_probs=0.0
Q ss_pred EEcCCeEEEEEEccCCCeEEEEEEEEeCCC------cceeEEEEEEEeecCCceeEEEEEEEeeCCCCeEEEEEcCCceE
Q 024666 152 YTHTDLIASLTLNDKGDTLNASYYHIVSPL------TNTAVGAELTHSFSSNENTLTIGTQHALDPLTSVKARVNNYGRA 225 (264)
Q Consensus 152 Y~~~d~~~s~~~~~~~~~~~~Sy~~kv~~~------~~~~~g~e~~~~~~~~~~~~~vG~~y~ld~~~~~Kakv~s~g~v 225 (264)
+-+-+|.++.+..- .+.++|.+|-.+. -.+..++.+.|.+ ...+.+.+.....+.+...+-+--.-.-.+
T Consensus 218 ~lg~~w~~tgkt~~---~~~~gy~~k~~d~~~~~Dfsg~~~~~~~~w~p-t~~t~l~l~~sr~~~~~~~~~~~y~~~~~~ 293 (381)
T TIGR03014 218 ELRFDWAVTGKSKL---QGSIGYVDREHDHLSQRDFSGVIGRLNADWMV-TGKTSLNAAISRELANYQTVTSSYYRNRGT 293 (381)
T ss_pred eeceEEEecccEEE---EEEEeEEeccccccccCCccceeEEEEEEEcc-cCcEEEEEEEEeccCCccccccceEEEEEE
Q ss_pred EEEEEEeeCCCeEEEEEEEeecccc-C-----------CCceeEEEEEEeC
Q 024666 226 SALIQHEWRPKSLFTISGEVDTRAI-E-----------KSAKIGLALALKP 264 (264)
Q Consensus 226 ~~~y~~kl~p~~~l~ls~~~d~~~~-~-----------~~~K~G~gl~l~~ 264 (264)
++.+.+++.+++.+.++...--.+. . ...-+++++.++|
T Consensus 294 ~l~~~~~~~~~v~~~~~~~y~~~dY~g~~~~~~~~R~D~~~~~~~~~~Y~~ 344 (381)
T TIGR03014 294 SIGPTWQATSKIAVRGRLDYEERDFEGDPLVGPPARSDRTRSGSLSLDWSP 344 (381)
T ss_pred EEeeEeeccceEEEEEEEEEEEeeccCccccCCCccccceEEEEEEEEEEE
No 44
>PRK04423 organic solvent tolerance protein; Provisional
Probab=44.89 E-value=3.8e+02 Score=27.87 Aligned_cols=83 Identities=16% Similarity=0.133 Sum_probs=56.8
Q ss_pred eCCcceEeEEEEeecCCCcceeEEEEEeEEcC-CeEEEEEEc---------cCCCeEEEEEEEEeCCCcceeEEEEEEEe
Q 024666 124 GNNSVALGTDLSFDTATGNFTKCNAGLSYTHT-DLIASLTLN---------DKGDTLNASYYHIVSPLTNTAVGAELTHS 193 (264)
Q Consensus 124 ~~~~~~lG~e~~yd~~~~~~~~~~~~~~Y~~~-d~~~s~~~~---------~~~~~~~~Sy~~kv~~~~~~~~g~e~~~~ 193 (264)
..+.|.+.+++.||...+.+...++.++|..+ ...+.+... +..+.+.+|.-.+++++| .+.+...|+
T Consensus 627 ~~~~~~l~~~~~~d~~~~r~~~~~~~~~y~~~~~~~~nl~Yry~~~~~~~~~~~eq~~~s~~~pi~~~W--~~~g~~~yd 704 (798)
T PRK04423 627 INDRWTLGATYQWNPNSRREDLASLRTRYLLPNDGIINLAYRYRRNLIDNSDQLKQADFSFLYPINPRW--SAVGRYYYS 704 (798)
T ss_pred ecCcEEEEeEEEECCccCcceeEEEEEEEcCCCCcEEEEEEEEecccccccCChhheeEEEEEEecCCE--EEEEEEEEe
Confidence 58999999999999887777777788888754 334433321 112457788888899994 778888888
Q ss_pred ecCC-ceeEEEEEEEe
Q 024666 194 FSSN-ENTLTIGTQHA 208 (264)
Q Consensus 194 ~~~~-~~~~~vG~~y~ 208 (264)
+..+ .....+|.+|+
T Consensus 705 l~~~~~~e~~~GleY~ 720 (798)
T PRK04423 705 LLDKKPLEIIGGVQWD 720 (798)
T ss_pred CcCCcchhhhcCcEEc
Confidence 7643 33445555554
No 45
>PRK10716 long-chain fatty acid outer membrane transporter; Provisional
Probab=42.30 E-value=3.1e+02 Score=26.10 Aligned_cols=46 Identities=15% Similarity=0.034 Sum_probs=25.3
Q ss_pred eEEEEEEEEeCCCcceeEEEEEEEe-----------ecCCceeEEEEEEEeeCCCCe
Q 024666 169 TLNASYYHIVSPLTNTAVGAELTHS-----------FSSNENTLTIGTQHALDPLTS 214 (264)
Q Consensus 169 ~~~~Sy~~kv~~~~~~~~g~e~~~~-----------~~~~~~~~~vG~~y~ld~~~~ 214 (264)
.+....=++++|+|.+.+|....-. +...+..+++|+.|+++++..
T Consensus 340 ~~~~G~~Y~~n~~l~LRaG~~yd~spv~~~~r~~~~Pd~dr~~~s~G~~y~~~~~~~ 396 (435)
T PRK10716 340 RIALGTTYYYDDNWTFRTGIAFDDSPVPAQNRSISIPDQDRFWLSAGTTYAFNKDAS 396 (435)
T ss_pred EEEeeEEEECCCCeEEEEeeEeccCCCCcCcccccccCCCCeEEEeeeEEEcCCCcE
Confidence 3555555677777544444433211 112455688888888865543
No 46
>TIGR03519 Bac_Flav_fam_1 Bacteroidetes-specific putative membrane protein. This model describes a protein family unique to, and greatly expanded in, the Bacteriodetes. Species in this lineage include several, such as Cytophaga hutchinsonii and Flavobacterium johnsoniae, that exhibit a poorly understood rapid gliding phenotype. Several members of this protein family are found in operons with other genes whose loss leads to a loss a this motility.
Probab=41.75 E-value=2.6e+02 Score=24.99 Aligned_cols=61 Identities=15% Similarity=0.110 Sum_probs=35.5
Q ss_pred eeEEEEEEEeecCCceeEEEEEEEeeCCCCeEEEEEcCCceEEEEEEEeeCCCeEEEEEEEeecccc----CCCceeEEE
Q 024666 184 TAVGAELTHSFSSNENTLTIGTQHALDPLTSVKARVNNYGRASALIQHEWRPKSLFTISGEVDTRAI----EKSAKIGLA 259 (264)
Q Consensus 184 ~~~g~e~~~~~~~~~~~~~vG~~y~ld~~~~~Kakv~s~g~v~~~y~~kl~p~~~l~ls~~~d~~~~----~~~~K~G~g 259 (264)
+.+++++.++. .+.+|+-|..+ .-+.+...-++.+++.+..+=++...++ .+.|.+.++
T Consensus 227 ~d~~~~~~~~~-----~~~~G~~Yr~~------------~ai~~~~G~~~~~~~~igysYd~~~s~l~~~~~gshEi~l~ 289 (292)
T TIGR03519 227 LDLGANALYND-----KLWAGAGYRGN------------DAVIGLVGFNLNKRLSIGYSYDFSTSSLSAYNGGSHEISVS 289 (292)
T ss_pred EEEeEEEEEee-----eEEEEEEecCC------------CcEEEEEEEEeCCCEEEEEEEeeEcccccCCCCCcEEEEEE
Confidence 56666666642 26666666652 2245555556655566666666665543 246887777
Q ss_pred EE
Q 024666 260 LA 261 (264)
Q Consensus 260 l~ 261 (264)
..
T Consensus 290 y~ 291 (292)
T TIGR03519 290 YR 291 (292)
T ss_pred Ee
Confidence 64
No 47
>PF03895 YadA_anchor: YadA-like C-terminal region; InterPro: IPR005594 This region represents the C-terminal 120 amino acids of a family of surface-exposed bacterial proteins. YadA, an adhesin from Yersinia, was the first member of this family to be characterised. UspA2 from Moraxella was second. The Eib immunoglobulin-binding proteins from E. coli were third, followed by the DsrA proteins of Haemophilus ducreyi, amongst others. These proteins are homologous at their C-terminal and have predicted signal sequences, but they diverge elsewhere. The C-terminal 9 amino acids, consisting of alternating hydrophobic amino acids ending in F or W, comprise a targeting motif for the outer membrane of the Gram negative cell envelope. This region is important for oligomerisation [].; PDB: 3LT6_C 3LT7_B 3H7X_D 3H7Z_A 2GR8_E 2GR7_F 3EMO_C 2XZR_A.
Probab=41.09 E-value=1.3e+02 Score=21.26 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=12.4
Q ss_pred CceeEEEEEEEeeCCCCeEEEEEc
Q 024666 197 NENTLTIGTQHALDPLTSVKARVN 220 (264)
Q Consensus 197 ~~~~~~vG~~y~ld~~~~~Kakv~ 220 (264)
++..+++|++|.++++..+++.+.
T Consensus 38 g~~A~A~G~~~~~~~~~~~~~~~s 61 (78)
T PF03895_consen 38 GESAVAVGASYRPNENVMVNAGVS 61 (78)
T ss_dssp TEEEEEEEEEEE-TSSEEEEEEEE
T ss_pred CcccEEEEEEEEeCCCEEEEEEEE
Confidence 455556666666555555554444
No 48
>PRK14574 hmsH outer membrane protein; Provisional
Probab=38.75 E-value=4.1e+02 Score=27.75 Aligned_cols=100 Identities=12% Similarity=0.049 Sum_probs=66.6
Q ss_pred EEEEEeEEcCCeEEEEEEcc----CCCe--EEEEEEEEeCCCcceeEEEEEEEeec----------CCceeEEEEEEEee
Q 024666 146 CNAGLSYTHTDLIASLTLND----KGDT--LNASYYHIVSPLTNTAVGAELTHSFS----------SNENTLTIGTQHAL 209 (264)
Q Consensus 146 ~~~~~~Y~~~d~~~s~~~~~----~~~~--~~~Sy~~kv~~~~~~~~g~e~~~~~~----------~~~~~~~vG~~y~l 209 (264)
.-+|+.|+..+..+.+.+.. ++.. .++|+++.+||.| .++++...+.. -....+.++..|.-
T Consensus 593 ~~~G~e~~~r~~~~~~e~~~~~~g~g~k~g~r~~~~~~~nD~W--~~~~~~~~~~~~tPlrA~~~gv~~~~~~~~~~yr~ 670 (822)
T PRK14574 593 LRLGGEWTSRDHWVEGEISNQNYGNGNKVGARLSTWYDLNDHW--RVGGQVERLAKDTPLRALKNKVTANSASAYVFWKA 670 (822)
T ss_pred eeccceEEecCceEEEEeehhhcCCCCCcCceEEEEecCCCce--eeeeeeecCCCCCCHHHHHcCCcceecceEEEEEE
Confidence 45778888888888875541 1222 6778889999995 88998888633 12346677777887
Q ss_pred CCCCeEEEEEc----CCce----EEEEEEEeeC--CCeEEEEEEEeec
Q 024666 210 DPLTSVKARVN----NYGR----ASALIQHEWR--PKSLFTISGEVDT 247 (264)
Q Consensus 210 d~~~~~Kakv~----s~g~----v~~~y~~kl~--p~~~l~ls~~~d~ 247 (264)
++...+...+. |||. +++..+++|- |.+++.....++.
T Consensus 671 ~e~r~~~~~~~~~~fsDgN~R~~~~~~~~~rl~~~p~~~~d~~~~~~~ 718 (822)
T PRK14574 671 DDKRDAELSVTPSRFSDGNNRWEYEFNGRQRIWTGPYLTADFNLGLAA 718 (822)
T ss_pred ccceEEEeeeeecccCCCchhhhhhcceeEEeecCCeEEEecceEEee
Confidence 76666666553 2333 7888888874 6666665555544
No 49
>PF05420 BCSC_C: Cellulose synthase operon protein C C-terminus (BCSC_C); InterPro: IPR008410 This entry contains the C-terminal regions of several bacterial cellulose synthase operon C (BCSC) proteins. BCSC is involved in cellulose synthesis although the exact function of this protein is unknown [].; GO: 0030244 cellulose biosynthetic process, 0019867 outer membrane
Probab=37.63 E-value=97 Score=28.75 Aligned_cols=41 Identities=24% Similarity=0.237 Sum_probs=34.6
Q ss_pred eEEEEEEEEeCCCcceeEEEEEEEeecC--CceeEEEEEEEeeCC
Q 024666 169 TLNASYYHIVSPLTNTAVGAELTHSFSS--NENTLTIGTQHALDP 211 (264)
Q Consensus 169 ~~~~Sy~~kv~~~~~~~~g~e~~~~~~~--~~~~~~vG~~y~ld~ 211 (264)
.+.+..-+|++++ +.+|+++.++... ++..+.+-.||.+++
T Consensus 299 ~l~a~~eyrls~~--~~lGg~~~~~~s~dY~~~~~~lylRY~f~~ 341 (342)
T PF05420_consen 299 SLRAAVEYRLSPH--WFLGGGLDIDNSGDYNPSHAMLYLRYSFDP 341 (342)
T ss_pred EEEEEEEEEecCC--EEEEEEEehhhcCCCCcceEEEEEEEeccC
Confidence 3778888999999 6999999998765 578888999999865
No 50
>PF11924 DUF3442: Protein of unknown function (DUF3442); InterPro: IPR024519 This domain is found in uncharacterised proteins, as well as intimin and invasin proteins. Intimin is believed to mediate adherence and it is necessary for the production of attaching and effacing lesions on tissue culture cells []. Invasin is a protein that allows enteric bacteria to penetrate cultured mammalian cells []. The entry of invasin in the cell is mediated by binding several beta-1 chain integrins [].; PDB: 4E1T_A 4E1S_A.
Probab=36.38 E-value=3.1e+02 Score=24.41 Aligned_cols=133 Identities=16% Similarity=0.069 Sum_probs=66.8
Q ss_pred CCcceEeEEEEeecC-CCcceeEEEEEeEEcCCeEEEEEEccCCCeEEEEEEEEeCCCc----ceeEEEEE--EEeecC-
Q 024666 125 NNSVALGTDLSFDTA-TGNFTKCNAGLSYTHTDLIASLTLNDKGDTLNASYYHIVSPLT----NTAVGAEL--THSFSS- 196 (264)
Q Consensus 125 ~~~~~lG~e~~yd~~-~~~~~~~~~~~~Y~~~d~~~s~~~~~~~~~~~~Sy~~kv~~~~----~~~~g~e~--~~~~~~- 196 (264)
.++|.+|+-+.||.. +.......+|+.|-.+.|.+++..= +..|=++.+.+.- +.+=|.++ .+.+..
T Consensus 105 ~~~~~~G~N~FyD~~~~~~~~R~~~G~E~~~~~~~l~~N~Y-----~pls~~~~~~~~~~~~Er~~~G~Di~~~~~lp~~ 179 (280)
T PF11924_consen 105 NDNWMLGYNAFYDYDFSRNHQRLGLGAEYWSDYLDLRANGY-----FPLSDWKDSSDSEDYEERPANGYDIEVGGRLPNY 179 (280)
T ss_dssp ETTEEEEEEEEEEEETTTTEEEEEEEEEEEETTEEEEEEEE-----EE-S--EE-SSSTT-EEEE--EEEEEEEEEETTE
T ss_pred CCCeEEEeEEEEecCCCCCcceeeeeeEeEeccceeEeeeE-----EecCCccccCcccchhhhcccceeEEEEEecCCC
Confidence 589999999999975 3457788899998888887777531 1111111111110 01122222 222211
Q ss_pred CceeEEEEE-EEeeCCCCeEE--EEEcCCceEEEEEEEeeCCCeEEEEEEEeeccccCCCceeEEEEEEe
Q 024666 197 NENTLTIGT-QHALDPLTSVK--ARVNNYGRASALIQHEWRPKSLFTISGEVDTRAIEKSAKIGLALALK 263 (264)
Q Consensus 197 ~~~~~~vG~-~y~ld~~~~~K--akv~s~g~v~~~y~~kl~p~~~l~ls~~~d~~~~~~~~K~G~gl~l~ 263 (264)
..-.+.+.+ +|.-|+-..+. .+-.+...+.+.++.++-|.+++.+.-..|... .....+++++.+.
T Consensus 180 ~~~~~~l~~~~y~g~~v~lf~~~~~~~~~~~~~~gl~y~p~p~lt~~~~~~~~~~~-~~~t~~~l~l~y~ 248 (280)
T PF11924_consen 180 PQLGAYLKYEQYYGDNVDLFGSDNRQKNPHGVTLGLEYTPIPLLTLGAGYQDDNGR-GSDTFFGLNLNYP 248 (280)
T ss_dssp EEEEEEEEEEEE-SSSB-TT-TTS-BSS-EEEEEEEEEEEETTEEEEEEEEEEGGG-EEEEEEEEEEEEE
T ss_pred CCcceEEEEEeecCCcccccCCccCcCCcceEEEEEEEEecCcEEEEEEEEccCCC-ccceEEEEEEEEe
Confidence 122223332 44443300000 112233445666667778888888866555431 2357777777764
No 51
>PF13609 Porin_4: Gram-negative porin; PDB: 2FGR_A 2FGQ_X 1E54_A 2POR_A 3POR_A 1PRN_A 6PRN_A 8PRN_A 1H6S_1 3PRN_A ....
Probab=36.26 E-value=2.9e+02 Score=24.00 Aligned_cols=24 Identities=17% Similarity=0.246 Sum_probs=18.7
Q ss_pred CceeEEEEEEEeeCCCCeEEEEEc
Q 024666 197 NENTLTIGTQHALDPLTSVKARVN 220 (264)
Q Consensus 197 ~~~~~~vG~~y~ld~~~~~Kakv~ 220 (264)
....+++|++|.+.++..+.+.+.
T Consensus 281 ~~~~~~~g~~Y~~~~~~~~~a~y~ 304 (311)
T PF13609_consen 281 DATSYAVGVDYDFSKNTSLYAEYA 304 (311)
T ss_dssp EEEEEEEEEEEEEETTEEEEEEEE
T ss_pred CeEEEEEEEEEEcCCCEEEEEEEE
Confidence 467888888888888888877653
No 52
>PF04453 OstA_C: Organic solvent tolerance protein; InterPro: IPR007543 This family is involved in organic solvent tolerance in bacteria. The region contains several highly conserved, potentially catalytic, residues. ostA is one of a number of genes that confer organic solvent tolerance in Escherichia coli [, ]. This protein has significant medical importance since endoscopes are disinfected by pre-cleaning and soaking them in glutaraldehyde. Tolerant bacteria may, therefore, survive this disinfecting procedure [].; GO: 0010033 response to organic substance, 0016044 cellular membrane organization, 0019867 outer membrane
Probab=33.60 E-value=3.7e+02 Score=24.50 Aligned_cols=32 Identities=25% Similarity=0.505 Sum_probs=28.1
Q ss_pred eCCcceEeEEEEeecCCCcceeEEEEEeEEcC
Q 024666 124 GNNSVALGTDLSFDTATGNFTKCNAGLSYTHT 155 (264)
Q Consensus 124 ~~~~~~lG~e~~yd~~~~~~~~~~~~~~Y~~~ 155 (264)
..++|.+.+.+.||.....+...++.+.|+.+
T Consensus 316 ~~~~l~l~~~~~yd~~~~~~~~~~~~~~~~~~ 347 (388)
T PF04453_consen 316 PNDNLSLSSDTQYDPYDNRISRSNVSLSYRPD 347 (388)
T ss_pred ecCCEEEEEEEEECCCCCceEEEEEEEEEEcC
Confidence 57889999999999988889888888888765
No 53
>PF13557 Phenol_MetA_deg: Putative MetA-pathway of phenol degradation
Probab=32.51 E-value=3e+02 Score=23.13 Aligned_cols=46 Identities=24% Similarity=0.236 Sum_probs=29.6
Q ss_pred EEEEEeCCCcceeEEEEEEEee---------------cCCceeEEEEEEEeeCCCCeEEEEEc
Q 024666 173 SYYHIVSPLTNTAVGAELTHSF---------------SSNENTLTIGTQHALDPLTSVKARVN 220 (264)
Q Consensus 173 Sy~~kv~~~~~~~~g~e~~~~~---------------~~~~~~~~vG~~y~ld~~~~~Kakv~ 220 (264)
.+-++++++ +.+++|..+.. +.....+..|..|.+.++..+.+.+.
T Consensus 170 ~~~y~~~~~--~~~~~~~~~~~~~~~~d~~~g~~~~~~~~~~~~~~gv~y~~~~~~~l~~~~~ 230 (248)
T PF13557_consen 170 ALSYALTPK--LSLGLEGYGYYDQLTDDKGNGVDNGSRQNSFYLGPGVSYQLSPNLSLDAGVG 230 (248)
T ss_pred EEEEEcCcc--eEEeEEeEEEEeeccccccCCccCCCccceEEEEEEEEEEEcCCeEEEEEEE
Confidence 444567777 46777766322 23566788888999977666655553
No 54
>PF09381 Porin_OmpG: Outer membrane protein G (OmpG); InterPro: IPR018981 Porins are channel proteins in the outer membrane of Gram-negative bacteria which mediate the uptake of molecules required for growth and survival. Escherichia coli OmpG forms a 14 stranded beta-barrel and in contrast to most porins, appears to function as a monomer []. The central pore of OmpG is wider than other E. coli porins and it is speculated that it may form a non-specific channel for the transport of larger oligosaccharides []. ; PDB: 2IWV_C 2F1C_X 2JQY_A 2IWW_B 2WVP_A 2X9K_A.
Probab=31.20 E-value=1.7e+02 Score=26.22 Aligned_cols=65 Identities=15% Similarity=0.156 Sum_probs=39.5
Q ss_pred ceeEEEEEEEeeCC------CCeEEEEEcCCceEEEEEEEeeCCCeEEEEEEEeecccc-CC----CceeEEEEEE
Q 024666 198 ENTLTIGTQHALDP------LTSVKARVNNYGRASALIQHEWRPKSLFTISGEVDTRAI-EK----SAKIGLALAL 262 (264)
Q Consensus 198 ~~~~~vG~~y~ld~------~~~~Kakv~s~g~v~~~y~~kl~p~~~l~ls~~~d~~~~-~~----~~K~G~gl~l 262 (264)
.++++==.|+-||. +--..--..+.-++|++|++.+.|+++++|-=.....+- .+ -|.-|+|++.
T Consensus 224 ~~tiTPY~R~~LD~w~n~dw~~~~~re~~~~~RlGll~~~~~~~glsmtLEYAYE~q~hd~g~~~kfHy~GvGv~Y 299 (301)
T PF09381_consen 224 NTTITPYTRIGLDRWSNWDWQDDLEREGHDFTRLGLLYEYDFPNGLSMTLEYAYEWQDHDEGDSDKFHYTGVGVNY 299 (301)
T ss_dssp TEEEEEEEEEEEEEEESTTTTTSSS-EEEEEEEEEEEEEEESSSSEEEEEEEEEEEEEESSSSSEEEEEEEEEEEE
T ss_pred CceeccceEeeeecccccccccchhhcCCccceeEEEEecccCCCcEEEEeeeeehhhccCCcccceeeeccceee
Confidence 34555555555532 111222333446799999999999999888766554432 22 2777888874
No 55
>PRK10993 outer membrane protease; Reviewed
Probab=30.77 E-value=4.3e+02 Score=24.28 Aligned_cols=74 Identities=14% Similarity=0.028 Sum_probs=43.7
Q ss_pred eEEEEEEEEeCCCcceeEEEEEEEeecCCceeEEEEEEEeeCCCCeEEEEE--cCCceEEEEEEEeeC-CCeEEEEEEEe
Q 024666 169 TLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHALDPLTSVKARV--NNYGRASALIQHEWR-PKSLFTISGEV 245 (264)
Q Consensus 169 ~~~~Sy~~kv~~~~~~~~g~e~~~~~~~~~~~~~vG~~y~ld~~~~~Kakv--~s~g~v~~~y~~kl~-p~~~l~ls~~~ 245 (264)
++.+.++---+++ -.+|+-..|+.. +..--+-|+.|..+++.. |..+ =.++.++..|+|++. |-+-|+.+-.+
T Consensus 133 dln~~~w~l~~~~--yklG~~aGyqy~-~~sw~A~GG~y~Y~~~~~-r~~~g~fPd~~~~I~Y~Q~f~~pyiGL~g~y~~ 208 (314)
T PRK10993 133 DLNLKGWLLQNPN--YRLGVMAGYQET-RFSWTAYGGSYIYSNGGF-RDDIGTFPDGERGIGYKQRFKMPYIGLTGSYRY 208 (314)
T ss_pred ceecceeeecCCC--ceeeeEeeeEEE-eceeEccCceEEcCCCCC-CCCccccCCCccceeeEEEecceeeeEEEEEEe
Confidence 5666677666777 366776666643 444446677766633311 2211 157899999999994 34544444444
Q ss_pred e
Q 024666 246 D 246 (264)
Q Consensus 246 d 246 (264)
+
T Consensus 209 ~ 209 (314)
T PRK10993 209 D 209 (314)
T ss_pred c
Confidence 3
No 56
>PRK10177 putative invasin; Provisional
Probab=29.74 E-value=5.3e+02 Score=25.01 Aligned_cols=38 Identities=18% Similarity=0.150 Sum_probs=26.4
Q ss_pred eCCcceEeEEEEeecC-CCcceeEEEEEeEEcCCeEEEE
Q 024666 124 GNNSVALGTDLSFDTA-TGNFTKCNAGLSYTHTDLIASL 161 (264)
Q Consensus 124 ~~~~~~lG~e~~yd~~-~~~~~~~~~~~~Y~~~d~~~s~ 161 (264)
-.++|.+|+.+.||.. ++......+|+.|-.+.+.+++
T Consensus 168 ~~~~wmlG~N~F~D~dls~~h~R~glGaEaw~dylklsa 206 (465)
T PRK10177 168 AAGNWLLGYNTFYDNLLDENLQRAGFGAEAWGEYLRLSA 206 (465)
T ss_pred ecCCeEEEeEEEEccCCCCCcceeeccceeeehheeeee
Confidence 4799999999999976 3344567777777655444444
No 57
>PF06178 KdgM: Oligogalacturonate-specific porin protein (KdgM); InterPro: IPR009331 This family consists of several bacterial proteins which are homologous to the oligogalacturonate-specific porin protein KdgM (Q934G3 from SWISSPROT) from Erwinia chrysanthemi. The phytopathogenic Gram-negative bacteria E. chrysanthemi secretes pectinases, which are able to degrade the pectic polymers of plant cell walls, and uses the degradation products as a carbon source for growth. KdgM is a major outer membrane protein, whose synthesis is strongly induced in the presence of pectic derivatives. KdgM behaves like a voltage-dependent porin that is slightly selective for anions and that exhibits fast block in the presence of trigalacturonate. In contrast to most porins, KdgM seems to be monomeric [].; PDB: 2WJQ_A 2WJR_A.
Probab=29.49 E-value=3.7e+02 Score=23.13 Aligned_cols=29 Identities=3% Similarity=-0.078 Sum_probs=13.8
Q ss_pred cCCceEEEEEEEeeCCCeEEEEEEEeecc
Q 024666 220 NNYGRASALIQHEWRPKSLFTISGEVDTR 248 (264)
Q Consensus 220 ~s~g~v~~~y~~kl~p~~~l~ls~~~d~~ 248 (264)
.+.-.+.+.|..+|+|.++|+-+..++..
T Consensus 59 ~ng~E~~~~y~~k~~d~~~l~PG~~~~~~ 87 (218)
T PF06178_consen 59 SNGNEFEISYRYKLNDNFTLQPGFSLESN 87 (218)
T ss_dssp --EEEEEEEE-EESSSSEEEEEEEEEEEE
T ss_pred cceeEEEEEEEEEcCCCEEEecceEEEEC
Confidence 33344555555555555555555555543
No 58
>cd01347 ligand_gated_channel TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.
Probab=28.74 E-value=5.1e+02 Score=24.56 Aligned_cols=50 Identities=14% Similarity=0.020 Sum_probs=29.1
Q ss_pred EEEEEEeCCCcceeEEEEEEEeecC---------------CceeEEEEEEEeeCCCCeEEEEEcC
Q 024666 172 ASYYHIVSPLTNTAVGAELTHSFSS---------------NENTLTIGTQHALDPLTSVKARVNN 221 (264)
Q Consensus 172 ~Sy~~kv~~~~~~~~g~e~~~~~~~---------------~~~~~~vG~~y~ld~~~~~Kakv~s 221 (264)
+.+-.++.+++.+.+|++.++.... ....-.++..|++.+...+++....
T Consensus 339 ~~~~~~~~~~~~l~~G~R~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~y~~~~~~~~~~~~~~ 403 (635)
T cd01347 339 AQDTIELTDDLTLTLGLRYDHYDQDSKDTIAGGTTAKKSYSHWSPSLGLVYKLTDGLSLYASYSQ 403 (635)
T ss_pred EEEEEeccCceEEEEEEEEEEEEeccccccccccccccccceeccceeEEEEcCCCEEEEEEeee
Confidence 3444567777778888888876432 1234455555666555555555443
No 59
>PF03895 YadA_anchor: YadA-like C-terminal region; InterPro: IPR005594 This region represents the C-terminal 120 amino acids of a family of surface-exposed bacterial proteins. YadA, an adhesin from Yersinia, was the first member of this family to be characterised. UspA2 from Moraxella was second. The Eib immunoglobulin-binding proteins from E. coli were third, followed by the DsrA proteins of Haemophilus ducreyi, amongst others. These proteins are homologous at their C-terminal and have predicted signal sequences, but they diverge elsewhere. The C-terminal 9 amino acids, consisting of alternating hydrophobic amino acids ending in F or W, comprise a targeting motif for the outer membrane of the Gram negative cell envelope. This region is important for oligomerisation [].; PDB: 3LT6_C 3LT7_B 3H7X_D 3H7Z_A 2GR8_E 2GR7_F 3EMO_C 2XZR_A.
Probab=28.42 E-value=2.1e+02 Score=20.06 Aligned_cols=40 Identities=3% Similarity=-0.056 Sum_probs=26.0
Q ss_pred cCCceEEEEEEEeeCCCeEEEEEEEeeccccCCCceeEEEEEE
Q 024666 220 NNYGRASALIQHEWRPKSLFTISGEVDTRAIEKSAKIGLALAL 262 (264)
Q Consensus 220 ~s~g~v~~~y~~kl~p~~~l~ls~~~d~~~~~~~~K~G~gl~l 262 (264)
+...-+++.+.+++++++.+.++...+. .++.-.|.|+.+
T Consensus 37 ~g~~A~A~G~~~~~~~~~~~~~~~s~~~---~~~~~~~~G~~~ 76 (78)
T PF03895_consen 37 RGESAVAVGASYRPNENVMVNAGVSYGS---GGDVGAGAGVSY 76 (78)
T ss_dssp TTEEEEEEEEEEE-TSSEEEEEEEEEET---TS--EEEEEEEE
T ss_pred CCcccEEEEEEEEeCCCEEEEEEEEecC---CCCEEEEEEEEe
Confidence 3455688999999999999999999754 334444444443
No 60
>PF13505 OMP_b-brl: Outer membrane protein beta-barrel domain; PDB: 3DZM_A 2LHF_A 1Q9F_A 1ORM_A 1Q9G_A 1QJ9_A 1QJ8_A 3QRA_A 3QRC_B.
Probab=27.53 E-value=2.8e+02 Score=21.12 Aligned_cols=25 Identities=4% Similarity=-0.292 Sum_probs=18.0
Q ss_pred CCceEEEEEEEeeCCCeEEEEEEEe
Q 024666 221 NYGRASALIQHEWRPKSLFTISGEV 245 (264)
Q Consensus 221 s~g~v~~~y~~kl~p~~~l~ls~~~ 245 (264)
....+++.++.++.+.+.+.+....
T Consensus 129 ~~~~~g~G~~y~~~~~~~l~~~y~~ 153 (176)
T PF13505_consen 129 FGFGLGAGVEYNISDNFSLNAEYRY 153 (176)
T ss_dssp EEEEEEEEEEEESSTTEEEEEEEEE
T ss_pred eEEEEEEEEEEEECCCEEEEEEEEE
Confidence 3445778888899888877766555
No 61
>PF11231 DUF3034: Protein of unknown function (DUF3034); InterPro: IPR021393 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=26.05 E-value=4.7e+02 Score=23.24 Aligned_cols=15 Identities=27% Similarity=0.519 Sum_probs=8.8
Q ss_pred ceeEEEEeecceeee
Q 024666 92 GKVELQYQHEYAGIS 106 (264)
Q Consensus 92 ~k~~~~y~~~~~~~~ 106 (264)
-++++.|.+..+.+.
T Consensus 58 nRvElS~ArQ~fd~~ 72 (258)
T PF11231_consen 58 NRVELSYARQTFDLG 72 (258)
T ss_pred ceEEEEEEEEEccCC
Confidence 356666666655443
No 62
>COG4206 BtuB Outer membrane cobalamin receptor protein [Coenzyme metabolism]
Probab=24.10 E-value=3.2e+02 Score=27.19 Aligned_cols=22 Identities=18% Similarity=0.320 Sum_probs=17.7
Q ss_pred EEEEEEEeeCCCCeEEEEEcCC
Q 024666 201 LTIGTQHALDPLTSVKARVNNY 222 (264)
Q Consensus 201 ~~vG~~y~ld~~~~~Kakv~s~ 222 (264)
+.+-..|.+++.+++++||.|-
T Consensus 561 ~Dl~~~Y~it~~~~v~grIeNl 582 (608)
T COG4206 561 LDLRVSYPITDHLTVSGRIENL 582 (608)
T ss_pred EEEEEEEEecCceEEeEehhhh
Confidence 3445789999999999999873
No 63
>PRK15318 intimin-like protein SinH; Provisional
Probab=23.57 E-value=4.4e+02 Score=27.02 Aligned_cols=80 Identities=24% Similarity=0.216 Sum_probs=37.0
Q ss_pred CCCCeEEEEEEEecCC--CCcee-EEEEeecceeeeEEEeccCCCeE-EEEEEE-eCCcceEeEEEEeecCCCcceeEEE
Q 024666 74 PAPGLKSIFSFIVPDQ--RSGKV-ELQYQHEYAGISTGIGFTANPIV-NFSGVV-GNNSVALGTDLSFDTATGNFTKCNA 148 (264)
Q Consensus 74 ~~~glk~~~~~~~p~~--~~~k~-~~~y~~~~~~~~~~v~l~~~P~~-~~s~v~-~~~~~~lG~e~~yd~~~~~~~~~~~ 148 (264)
.+.|..+.++...|.. -++++ .-||.++.+.+-.+=+...+|.. .....+ ..|-+.+|++-.--.....-+...+
T Consensus 226 PAnG~DIraegyLPayPqLG~kl~YEQY~Gd~V~LFg~~~~qknP~A~T~GlnYTPvPLvTl~~~~r~g~~g~~dt~~~l 305 (730)
T PRK15318 226 PARGWDIRAEGWLPAYPQLGGKLVYEQYYGDEVALFGTDNLQKDPHAVTLGLKYQPVPLVTVGTDYKAGTGDNNDLSVNA 305 (730)
T ss_pred cCCceeeEeeEecccCcccCceEEEEEecCceeeecCCCCcccCcceEEEeeeecccccEEEeecceeccCCCcCceEEE
Confidence 5677777777666552 23333 23555554433222122235653 443444 5666666655433222223334444
Q ss_pred EEeEE
Q 024666 149 GLSYT 153 (264)
Q Consensus 149 ~~~Y~ 153 (264)
.+.|+
T Consensus 306 ~lnY~ 310 (730)
T PRK15318 306 TLNYQ 310 (730)
T ss_pred EEEEe
Confidence 44553
No 64
>smart00869 Autotransporter Autotransporter beta-domain. Secretion of protein products occurs by a number of different pathways in bacteria. One of these pathways known as the type IV pathway was first described for the IgA1 protease. The protein component that mediates secretion through the outer membrane is contained within the secreted protein itself, hence the proteins secreted in this way are called autotransporters. This family corresponds to the presumed integral membrane beta-barrel domain that transports the protein. This domain is found at the C-terminus of the proteins it occurs in. The N-terminus contains the variable passenger domain that is translocated across the membrane. Once the passenger domain is exported it is cleaved auto-catalytically in some proteins, in others a different peptidase is used and in some cases no cleavage occurs.
Probab=20.46 E-value=4.9e+02 Score=21.43 Aligned_cols=36 Identities=25% Similarity=0.343 Sum_probs=21.0
Q ss_pred eeEEEEEEEeecCC-----ceeEEEEEEEee-CCCCeEEEEE
Q 024666 184 TAVGAELTHSFSSN-----ENTLTIGTQHAL-DPLTSVKARV 219 (264)
Q Consensus 184 ~~~g~e~~~~~~~~-----~~~~~vG~~y~l-d~~~~~Kakv 219 (264)
+.+|+++.+....+ ...+.+++.+++ +......+.+
T Consensus 172 ~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (261)
T smart00869 172 LPLGLRLGYAFALGDGSTLTPYLSLAYQHDFYDKNPVVTASL 213 (261)
T ss_pred EeeEEEEeeeEEeCCCcEEEEEEEEEEEehhCCCChHheeeh
Confidence 56777777765532 255677777777 3333444443
Done!