Query 024666
Match_columns 264
No_of_seqs 134 out of 596
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 12:18:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024666.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024666hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3emn_X Voltage-dependent anion 100.0 1.6E-56 5.5E-61 400.8 37.6 239 23-264 47-295 (295)
2 3emn_X Voltage-dependent anion 98.5 0.00037 1.2E-08 61.8 28.1 179 76-261 49-236 (295)
3 3bs0_A TODX; beta barrel, oute 90.8 9.4 0.00032 34.7 18.5 76 167-244 278-397 (439)
4 3bry_A TBUX; beta barrel, oute 87.2 17 0.00057 32.9 17.8 51 167-219 278-356 (441)
5 3dwo_X Probable outer membrane 86.1 21 0.0007 32.8 19.3 51 167-219 285-357 (451)
6 3pgu_A Long-chain fatty acid t 85.5 13 0.00046 33.8 13.1 77 167-248 272-350 (427)
7 3nsg_A Outer membrane protein 80.5 29 0.001 30.4 20.0 134 126-262 147-339 (341)
8 3prn_A Porin; integral membran 75.2 41 0.0014 29.2 16.9 113 144-262 162-289 (289)
9 2por_A Porin; HET: C8E; 1.80A 67.1 60 0.002 27.8 16.3 133 125-261 125-298 (301)
10 3bry_A TBUX; beta barrel, oute 66.0 75 0.0026 28.5 16.6 20 118-137 282-302 (441)
11 1uyn_X NALP; autotransporter, 64.4 61 0.0021 27.7 10.7 63 184-246 210-290 (308)
12 2wjr_A Probable N-acetylneuram 60.6 16 0.00054 30.3 5.9 49 167-215 53-101 (214)
13 2lme_A Adhesin YADA; trimeric 58.5 26 0.00087 25.5 6.1 25 196-220 64-88 (105)
14 2vdf_A OPCA, outer membrane pr 50.6 1.1E+02 0.0038 25.6 10.2 20 174-193 98-117 (253)
15 3bs0_A TODX; beta barrel, oute 47.7 1.5E+02 0.0053 26.4 17.4 95 114-211 277-388 (439)
16 3vy8_X Outer membrane protein; 42.6 1.8E+02 0.006 25.6 14.5 115 125-243 155-330 (355)
17 1pho_A Phosphoporin; outer mem 41.1 1.7E+02 0.0057 24.9 20.2 134 126-262 143-328 (330)
18 3kvn_X Esterase ESTA; beta bar 40.8 2.4E+02 0.0082 26.6 17.9 63 184-246 534-614 (632)
19 3dwo_X Probable outer membrane 38.2 2.3E+02 0.0078 25.6 26.2 106 116-238 287-410 (451)
20 2fgq_X OMP32, outer membrane p 37.8 1.9E+02 0.0066 24.7 17.4 120 125-247 145-296 (332)
21 4e1s_A Intimin; outer membrane 36.3 1.9E+02 0.0066 24.2 17.0 38 125-162 60-98 (242)
22 1i78_A Protease VII; integral 35.2 2.2E+02 0.0074 24.5 21.8 213 22-247 7-255 (297)
23 3vy8_X Outer membrane protein; 29.9 2.8E+02 0.0097 24.2 20.0 42 67-108 146-202 (355)
24 3nsg_A Outer membrane protein 28.6 2.8E+02 0.0097 23.9 21.1 16 16-31 50-65 (341)
25 3pgu_A Long-chain fatty acid t 28.0 3.3E+02 0.011 24.4 24.0 79 169-261 326-418 (427)
26 2zfg_A Outer membrane protein 26.7 3E+02 0.01 23.5 20.0 134 126-262 149-338 (340)
27 4e1s_A Intimin; outer membrane 26.4 1.6E+02 0.0056 24.7 6.7 30 17-46 24-54 (242)
28 2fgq_X OMP32, outer membrane p 24.3 3.3E+02 0.011 23.2 19.9 22 64-85 133-155 (332)
29 2x55_A Coagulase/fibrinolysin; 24.2 3.4E+02 0.012 23.2 23.6 183 55-247 41-249 (293)
30 4e1t_A Invasin; outer membrane 22.7 1.6E+02 0.0053 24.9 5.8 42 220-262 50-91 (245)
31 3aeh_A Hemoglobin-binding prot 22.3 2.9E+02 0.01 23.2 7.8 21 199-219 264-284 (308)
32 2por_A Porin; HET: C8E; 1.80A 22.0 3.6E+02 0.012 22.7 14.4 23 198-220 260-282 (301)
33 3prn_A Porin; integral membran 21.4 3.9E+02 0.013 22.9 19.4 127 94-223 133-275 (289)
No 1
>3emn_X Voltage-dependent anion-selective channel protein; VDAC1, eukaryotic membrane protein, beta barrel, AP ION transport, mitochondrion, outer membrane; HET: MC3; 2.30A {Mus musculus} PDB: 2k4t_A 2jk4_A
Probab=100.00 E-value=1.6e-56 Score=400.78 Aligned_cols=239 Identities=23% Similarity=0.347 Sum_probs=228.6
Q ss_pred ecceEEEEEeeeeCC--ceeEEEEEEEEeeCc--eEEEEEEcCCCcEEEEEEEec-CCCCeEEEEEEEe-cC--CCCcee
Q 024666 23 VMHLQAITSSGVKKG--ELFLADVSTQLKNKN--ITTDVKVDTNSNLFTTITVDE-PAPGLKSIFSFIV-PD--QRSGKV 94 (264)
Q Consensus 23 ~~~~v~~~s~~~~~~--~~~~g~l~~~y~~~~--~~l~~~~~t~g~l~~~i~~~~-~~~glk~~~~~~~-p~--~~~~k~ 94 (264)
.++||+|+++|.+++ ++++|++|++|+.++ ++++++|+|+|+|.++|++++ ++||||+++++++ |+ .+++|+
T Consensus 47 s~~gv~ft~~g~~~~~~~~v~g~le~kyk~~~~g~t~~~kw~t~n~l~t~i~~~~~l~~Glk~~~~~~~~P~~~~ks~kl 126 (295)
T 3emn_X 47 SENGLEFTSSGSANTETTKVNGSLETKYRWTEYGLTFTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKI 126 (295)
T ss_dssp CSSEEEEEEEEEEETTTCCEEEEEEEEEEETTTTEEEEEEEETTSCEEEEEEEESSSSTTEEEEEEEEEETTTTEEEEEE
T ss_pred cCCCEEEEEEEEecCCCCceeeEEEEEEEecCCcEEEEEEEeCCCcEEEEEEEccccCCceEEEEEEEECCCCCCcceEE
Confidence 459999999998877 999999999999986 899999999999999999999 9999999999995 76 478999
Q ss_pred EEEEeecceeeeEEEecc-CCCeEEEEEEEeCCcceEeEEEEeecCCCcceeEEEEEeEEcCCeEEEEEEccCCCeEEEE
Q 024666 95 ELQYQHEYAGISTGIGFT-ANPIVNFSGVVGNNSVALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLTLNDKGDTLNAS 173 (264)
Q Consensus 95 ~~~y~~~~~~~~~~v~l~-~~P~~~~s~v~~~~~~~lG~e~~yd~~~~~~~~~~~~~~Y~~~d~~~s~~~~~~~~~~~~S 173 (264)
+++|+||+++++++++++ ++|.++.++|+++++|++|+|+.||+.++++++|+++++|+.+||+++++++| ++.+++|
T Consensus 127 ~~~Y~~~~~~~~~~v~l~~~~P~i~~s~v~g~~~~~~G~e~~yd~~~~~~t~~n~~~gY~~~d~~~s~~l~~-~~~~~aS 205 (295)
T 3emn_X 127 KTGYKREHINLGCDVDFDIAGPSIRGALVLGYEGWLAGYQMNFETSKSRVTQSNFAVGYKTDEFQLHTNVND-GTEFGGS 205 (295)
T ss_dssp EEEEEETTEEEEEEEEECTTCCEEEEEEEEEETTEEEEEEEEEETTTTEEEEEEEEEEEECSSEEEEEEEET-TTEEEEE
T ss_pred EEEEEcCCEeEEEEEEeccCCCEEEEEEEEeeCCEEEEEEEEEEeCCCCeeeEEEEEEEcCCCEEEEEEECC-CCeEEEE
Confidence 999999999999999995 79999999999999999999999999999999999999999999999999998 7899999
Q ss_pred EEEEeCCCcceeEEEEEEEeecCCceeEEEEEEEeeCCCCeEEEEEcCCceEEEEEEEeeCCCeEEEEEEEeeccccC-C
Q 024666 174 YYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHALDPLTSVKARVNNYGRASALIQHEWRPKSLFTISGEVDTRAIE-K 252 (264)
Q Consensus 174 y~~kv~~~~~~~~g~e~~~~~~~~~~~~~vG~~y~ld~~~~~Kakv~s~g~v~~~y~~kl~p~~~l~ls~~~d~~~~~-~ 252 (264)
||||++|+ +++|+|++|+.+.+++.++||+||++|+++++|||||++|.++++|||+|+|++++++|++||+++++ +
T Consensus 206 y~qkvs~~--~~~g~e~~~~~~~~~~~~tvG~ky~ld~~~~vKakvn~~g~v~~~y~~kl~p~v~ltls~~iD~~~l~~~ 283 (295)
T 3emn_X 206 IYQKVNKK--LETAVNLAWTAGNSNTRFGIAAKYQVDPDACFSAKVNNSSLIGLGYTQTLKPGIKLTLSALLDGKNVNAG 283 (295)
T ss_dssp EEEECSSS--EEEEEEEEEETTEEEEEEEEEEEECCSSSEEEEEEEETTSEEEEEEEEEEETTEEEEEEEEEESSCTTTS
T ss_pred EEEECCCc--eEEEEEEEEeccCCCcEEEEEEEEEcCCCCEEEEEECCCCEEEEEEEEecCCCcEEEEEEEECccccCCC
Confidence 99999999 89999999999889999999999999999999999999999999999999999999999999999884 7
Q ss_pred CceeEEEEEEeC
Q 024666 253 SAKIGLALALKP 264 (264)
Q Consensus 253 ~~K~G~gl~l~~ 264 (264)
.||||++|+||+
T Consensus 284 ~~K~Gl~l~l~~ 295 (295)
T 3emn_X 284 GHKLGLGLEFQA 295 (295)
T ss_dssp CCEEEEEEEEEC
T ss_pred CCcEEEEEEEeC
Confidence 899999999996
No 2
>3emn_X Voltage-dependent anion-selective channel protein; VDAC1, eukaryotic membrane protein, beta barrel, AP ION transport, mitochondrion, outer membrane; HET: MC3; 2.30A {Mus musculus} PDB: 2k4t_A 2jk4_A
Probab=98.48 E-value=0.00037 Score=61.81 Aligned_cols=179 Identities=13% Similarity=0.109 Sum_probs=117.3
Q ss_pred CCeEEEEEEE-ecC--CCCceeEEEEeecceeeeEEEeccCCCeEEEEEEE---eCCcceEeEEEEeecCCCcceeEEEE
Q 024666 76 PGLKSIFSFI-VPD--QRSGKVELQYQHEYAGISTGIGFTANPIVNFSGVV---GNNSVALGTDLSFDTATGNFTKCNAG 149 (264)
Q Consensus 76 ~glk~~~~~~-~p~--~~~~k~~~~y~~~~~~~~~~v~l~~~P~~~~s~v~---~~~~~~lG~e~~yd~~~~~~~~~~~~ 149 (264)
.|+.++.... .|+ .-.+.++.+|+....++..+......-.+.....+ ..|++-+-.+..+....+ -....+.
T Consensus 49 ~gv~ft~~g~~~~~~~~v~g~le~kyk~~~~g~t~~~kw~t~n~l~t~i~~~~~l~~Glk~~~~~~~~P~~~-~ks~kl~ 127 (295)
T 3emn_X 49 NGLEFTSSGSANTETTKVNGSLETKYRWTEYGLTFTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTG-KKNAKIK 127 (295)
T ss_dssp SEEEEEEEEEEETTTCCEEEEEEEEEEETTTTEEEEEEEETTSCEEEEEEEESSSSTTEEEEEEEEEETTTT-EEEEEEE
T ss_pred CCEEEEEEEEecCCCCceeeEEEEEEEecCCcEEEEEEEeCCCcEEEEEEEccccCCceEEEEEEEECCCCC-CcceEEE
Confidence 3445444444 232 22567888888887655554433333333333333 477887777777765433 2357777
Q ss_pred EeEEcCCeEEEEEEcc--CCCeEEEEEEEEeCCCcceeEEEEEEEeecCCc-eeEEEEEEEeeCCCCeEEEEEcCCceEE
Q 024666 150 LSYTHTDLIASLTLND--KGDTLNASYYHIVSPLTNTAVGAELTHSFSSNE-NTLTIGTQHALDPLTSVKARVNNYGRAS 226 (264)
Q Consensus 150 ~~Y~~~d~~~s~~~~~--~~~~~~~Sy~~kv~~~~~~~~g~e~~~~~~~~~-~~~~vG~~y~ld~~~~~Kakv~s~g~v~ 226 (264)
+.|..+++.+...+.- .+..+..|..- -.+. +.+|+|+.|+...++ +..++|.+|.- ++..+-+++++...+.
T Consensus 128 ~~Y~~~~~~~~~~v~l~~~~P~i~~s~v~-g~~~--~~~G~e~~yd~~~~~~t~~n~~~gY~~-~d~~~s~~l~~~~~~~ 203 (295)
T 3emn_X 128 TGYKREHINLGCDVDFDIAGPSIRGALVL-GYEG--WLAGYQMNFETSKSRVTQSNFAVGYKT-DEFQLHTNVNDGTEFG 203 (295)
T ss_dssp EEEEETTEEEEEEEEECTTCCEEEEEEEE-EETT--EEEEEEEEEETTTTEEEEEEEEEEEEC-SSEEEEEEEETTTEEE
T ss_pred EEEEcCCEeEEEEEEeccCCCEEEEEEEE-eeCC--EEEEEEEEEEeCCCCeeeEEEEEEEcC-CCEEEEEEECCCCeEE
Confidence 8999999988554421 12367666443 2477 699999999987654 56889999988 8999999999888999
Q ss_pred EEEEEeeCCCeEEEEEEEeeccccCCCceeEEEEE
Q 024666 227 ALIQHEWRPKSLFTISGEVDTRAIEKSAKIGLALA 261 (264)
Q Consensus 227 ~~y~~kl~p~~~l~ls~~~d~~~~~~~~K~G~gl~ 261 (264)
++|-||++|.+.+..-...+.. .+...+++|-.
T Consensus 204 aSy~qkvs~~~~~g~e~~~~~~--~~~~~~tvG~k 236 (295)
T 3emn_X 204 GSIYQKVNKKLETAVNLAWTAG--NSNTRFGIAAK 236 (295)
T ss_dssp EEEEEECSSSEEEEEEEEEETT--EEEEEEEEEEE
T ss_pred EEEEEECCCceEEEEEEEEecc--CCCcEEEEEEE
Confidence 9999999997755554444432 33455665543
No 3
>3bs0_A TODX; beta barrel, outer membrane protein, transport protein; HET: C8E; 2.60A {Pseudomonas putida} PDB: 3brz_A*
Probab=90.81 E-value=9.4 Score=34.74 Aligned_cols=76 Identities=12% Similarity=0.095 Sum_probs=49.6
Q ss_pred CCeEEEEEEEEeCCCcceeEEEEEEEeecC--------------------------CceeEEEEEEEeeCCCCeEEEEEc
Q 024666 167 GDTLNASYYHIVSPLTNTAVGAELTHSFSS--------------------------NENTLTIGTQHALDPLTSVKARVN 220 (264)
Q Consensus 167 ~~~~~~Sy~~kv~~~~~~~~g~e~~~~~~~--------------------------~~~~~~vG~~y~ld~~~~~Kakv~ 220 (264)
+..+.++..|+++++ +.+.+++.|..=+ ....+++|++|+++++.++|+=+.
T Consensus 278 P~~~~~g~~~~~~~~--~~l~~d~~~~~WS~~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~~lG~ey~~~~~~~lRaG~~ 355 (439)
T 3bs0_A 278 PASLTLGLAHQFNER--WVVAADIKRAYWGDVMDSMNVAFISQLGGIDVALPHRYQDITVASIGTAYKYNNDLTLRAGYS 355 (439)
T ss_dssp CCEEEEEEEEESSSS--EEEEEEEEEECGGGCCC-CCCEEEETTEEEEECCCCCCCCEEEEEEEEEEECSSSEEEEEEEE
T ss_pred CcEEEEeEEEEeCCC--EEEEEEEEEEEccchhhheeeeecCCCCCccccCCCCceeeeEEEEEEEEEcCCCEEEEEeeE
Confidence 567999999999999 5888888875321 123567777777777777776542
Q ss_pred ------------------CCceEEEEEEEeeCCCeEEEEEEE
Q 024666 221 ------------------NYGRASALIQHEWRPKSLFTISGE 244 (264)
Q Consensus 221 ------------------s~g~v~~~y~~kl~p~~~l~ls~~ 244 (264)
+...+++....++.+++.+.++.+
T Consensus 356 yd~sp~~~~~~~~~~p~~~~~~~s~G~gy~~~~~~~id~a~~ 397 (439)
T 3bs0_A 356 YAQQALDSELILPVIPAYLKRHVTFGGEYDFDKDSRINLAIS 397 (439)
T ss_dssp ECC------CCCTTSCCCCSEEEEEEEEEESSSSEEEEEEEE
T ss_pred cccCCCCcccccccccCccceEEEeeeEEEcCCCcEEEEEEE
Confidence 112355555556655555555543
No 4
>3bry_A TBUX; beta barrel, outer membrane protein, transport protein; HET: C8E; 3.20A {Ralstonia pickettii}
Probab=87.24 E-value=17 Score=32.94 Aligned_cols=51 Identities=16% Similarity=0.196 Sum_probs=35.9
Q ss_pred CCeEEEEEEEEeCCCcceeEEEEEEEeecC----------------------------CceeEEEEEEEeeCCCCeEEEE
Q 024666 167 GDTLNASYYHIVSPLTNTAVGAELTHSFSS----------------------------NENTLTIGTQHALDPLTSVKAR 218 (264)
Q Consensus 167 ~~~~~~Sy~~kv~~~~~~~~g~e~~~~~~~----------------------------~~~~~~vG~~y~ld~~~~~Kak 218 (264)
+..+.++..|+++++ +.+.+++.|..-+ ....+++|++|+++++.++|+=
T Consensus 278 P~~~~~g~~~~~~~~--~~l~~d~~~~~wS~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~lG~ey~~~~~~~lRaG 355 (441)
T 3bry_A 278 PAQLTVGISHQFNDQ--LSVSADYQRVFWSSVMKDMNVGFVQSGSAANLDLSLPQNYRDISVFGIGAEYRYNAKWTFRGG 355 (441)
T ss_dssp CCEEEEEEEEESSSS--EEEEEEEEEECGGGCCSEEEEEECCSSSCCCCCCEEECCCCCEEEEEEEEEEEEETTEEEEEE
T ss_pred ccEEEEeEEEEeCCC--EEEEEEEEEEEccchhhheeeeccCCcccccccccCCCCceeceEEEEEEEEEcCCCeEEEEe
Confidence 567999999999999 5888888875311 1346667777777666666654
Q ss_pred E
Q 024666 219 V 219 (264)
Q Consensus 219 v 219 (264)
+
T Consensus 356 ~ 356 (441)
T 3bry_A 356 F 356 (441)
T ss_dssp E
T ss_pred e
Confidence 4
No 5
>3dwo_X Probable outer membrane protein; beta barrel; HET: C8E; 2.20A {Pseudomonas aeruginosa}
Probab=86.07 E-value=21 Score=32.79 Aligned_cols=51 Identities=22% Similarity=0.191 Sum_probs=36.1
Q ss_pred CCeEEEEEEEEeCCCcceeEEEEEEEeecC----------------------CceeEEEEEEEeeCCCCeEEEEE
Q 024666 167 GDTLNASYYHIVSPLTNTAVGAELTHSFSS----------------------NENTLTIGTQHALDPLTSVKARV 219 (264)
Q Consensus 167 ~~~~~~Sy~~kv~~~~~~~~g~e~~~~~~~----------------------~~~~~~vG~~y~ld~~~~~Kakv 219 (264)
++.+.++..++++++ +.+.+++.|..-+ ....+++|+.|+++++.++|+=+
T Consensus 285 P~~~~lg~~~~~~~~--~~l~~d~~~~~wS~~~~~~~~~~~~~~~~~~~~~~d~~~~~lG~eY~~~~~~tlRaG~ 357 (451)
T 3dwo_X 285 PAYASLDWVHQFNDR--LSLGASATWTEWSSFQDLTLKSHGNTIVSIPYTYRNTWTLAVGGDYKVTDQWTMRAGV 357 (451)
T ss_dssp CCEEEEEEEEECSSS--EEEEEEEEEECGGGCCEEEEEETTEEEEEEECCCCCEEEEEEEEEEESSSSEEEEEEE
T ss_pred CcEEEEEEEEEeCCC--EEEEEEEEEEEecCcceeEEEcCCccccccccCceeeeEEEEEEEEEeCCCEEEEEEE
Confidence 567899999999999 5888888886321 23466667777766666666633
No 6
>3pgu_A Long-chain fatty acid transport protein; outer membrane beta barrel, lipid transport, outer membrane; HET: C8E 2PE OLA; 1.70A {Escherichia coli k-12} SCOP: f.4.3.4 PDB: 3pgs_A* 1t16_A* 1t1l_A* 3dwn_A* 2r4p_A* 3pgr_A* 2r4n_A* 2r4l_A* 2r89_A 2r4o_A* 3pf1_A* 2r8a_A* 2r88_A
Probab=85.51 E-value=13 Score=33.81 Aligned_cols=77 Identities=16% Similarity=0.031 Sum_probs=46.6
Q ss_pred CCeEEEEEEEEeCCCcceeEEEEEEEeecCCceeEEEEEEEeeCCCC--eEEEEEcCCceEEEEEEEeeCCCeEEEEEEE
Q 024666 167 GDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHALDPLT--SVKARVNNYGRASALIQHEWRPKSLFTISGE 244 (264)
Q Consensus 167 ~~~~~~Sy~~kv~~~~~~~~g~e~~~~~~~~~~~~~vG~~y~ld~~~--~~Kakv~s~g~v~~~y~~kl~p~~~l~ls~~ 244 (264)
++.+.++..|+++++ +.+.+++.|..=+.-..+.+- +. +... ...-..++.+.+.+..|.+++|.+++..+..
T Consensus 272 P~~~~~g~~~~~~~~--~~l~~d~~~~~WS~~~~~~~~--~~-~g~~~~~~~~~~~D~~~~~lG~eY~~~~~~~lRaG~~ 346 (427)
T 3pgu_A 272 PEMWEVSGYNRVDPQ--WAIHYSLAYTSWSQFQQLKAT--ST-SGDTLFQKHEGFKDAYRIALGTTYYYDDNWTFRTGIA 346 (427)
T ss_dssp CEEEEEEEEEEEETT--EEEEEEEEEEEESSCSCEEEE--EE-TTEEEEEECCCCEEEEEEEEEEEEECSSSEEEEEEEE
T ss_pred CcEEEEEEEEecCCC--EEEEEEEEEEEeccccceEEE--cC-CCcccccccCCceeccEEEEEEEEEcCCCEEEEEEEE
Confidence 457899999999999 588999998743321111111 00 0000 1111234556677777777777777777777
Q ss_pred eecc
Q 024666 245 VDTR 248 (264)
Q Consensus 245 ~d~~ 248 (264)
.|..
T Consensus 347 yd~s 350 (427)
T 3pgu_A 347 FDDS 350 (427)
T ss_dssp EEEC
T ss_pred EccC
Confidence 7654
No 7
>3nsg_A Outer membrane protein F; porin, beta barrel, beta barrel MEMB protein; HET: LDA TAM FLC TLA; 2.79A {Salmonella enterica subsp}
Probab=80.50 E-value=29 Score=30.41 Aligned_cols=134 Identities=6% Similarity=0.010 Sum_probs=81.3
Q ss_pred CcceEeEEEEeecCC------CcceeEEEEEeEEcCCeEEEEEEccC---------------CCeEEEEEEEEeCCCcce
Q 024666 126 NSVALGTDLSFDTAT------GNFTKCNAGLSYTHTDLIASLTLNDK---------------GDTLNASYYHIVSPLTNT 184 (264)
Q Consensus 126 ~~~~lG~e~~yd~~~------~~~~~~~~~~~Y~~~d~~~s~~~~~~---------------~~~~~~Sy~~kv~~~~~~ 184 (264)
.+|.+++...+.-.. ..-..|.+++.|....+.+.+-.... .+.+.+.--..+.+ +
T Consensus 147 ~G~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~Y~~g~l~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~~g~~Y~~g~---~ 223 (341)
T 3nsg_A 147 DGLSFGIQYQGKNQDNHSINSQNGDGVGYTMAYEFDGFGVTAAYSNSKRTNDQQDRDGNGDRAESRAVGAKYDANN---V 223 (341)
T ss_dssp SSEEEEEEEECCBCSSSCGGGCBCSEEEEEEEEEETTEEEEEEEEEECCCSTTSSSSSCCSCEEEEEEEEEEEETT---E
T ss_pred CCEEEEEEEEeCCCCCccccccCCceEEEEEEEEcCCEEEEEEEEeecCcccccccccCccceEEEEEEeEEEeCC---E
Confidence 455555554443221 12346888888988888777754210 01233333334443 2
Q ss_pred eEEEEEEEeec---------------CCceeEEEEEEEeeCCCCeEEEEE-----cC----------CceEEEEEEEeeC
Q 024666 185 AVGAELTHSFS---------------SNENTLTIGTQHALDPLTSVKARV-----NN----------YGRASALIQHEWR 234 (264)
Q Consensus 185 ~~g~e~~~~~~---------------~~~~~~~vG~~y~ld~~~~~Kakv-----~s----------~g~v~~~y~~kl~ 234 (264)
.+++...+... .+...++++++|++.+...+++.. +. .-.+.+.++..|+
T Consensus 224 ~l~a~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~ga~Y~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~lg~~Y~LS 303 (341)
T 3nsg_A 224 YLAAVYAETRNMSIVENTVTDTVEMANKTQNLEVVAQYQFDFGLRPAISYVQSKGKQLNGAGGSADLAKYIQAGATYYFN 303 (341)
T ss_dssp EEEEEEEEESSCCCEECTTTCCEECCSEEEEEEEEEEECCTTSCCEEEEEEEEEEESCTTTTSCEEEEEEEEEEEEECCC
T ss_pred EEEEEEEEEEeccccCcccccccccceEEEEEEEEEEEEecCCcEEEEEEEEEeccccccccCCcCccEEEEEEEEEEec
Confidence 45554444321 134578999999998877776532 11 2247899999999
Q ss_pred CCeEEEEEEEeeccc--------cCCCceeEEEEEE
Q 024666 235 PKSLFTISGEVDTRA--------IEKSAKIGLALAL 262 (264)
Q Consensus 235 p~~~l~ls~~~d~~~--------~~~~~K~G~gl~l 262 (264)
+...+-+...+|..+ .+..-.+++|+..
T Consensus 304 KrT~lY~~y~~~~~~~~~~~~~~~~~dd~~~vGlry 339 (341)
T 3nsg_A 304 KNMNVWVDYRFNLLDENDYSSSYVGTDDQAAVGITY 339 (341)
T ss_dssp SSEEEEEEEEEECCCCCSSCTTTTCSSCEEEEEEEE
T ss_pred CCEEEEEEEEEecccCccccccccCcCCEEEEEEEE
Confidence 999998888887653 1235689998865
No 8
>3prn_A Porin; integral membrane protein, pore eyelet mutant, membra protein; HET: C8E; 1.90A {Rhodobacter blasticus} SCOP: f.4.3.1 PDB: 1bh3_A* 1prn_A* 7prn_A* 6prn_A* 5prn_A* 2prn_A* 8prn_A* 1h6s_1
Probab=75.18 E-value=41 Score=29.19 Aligned_cols=113 Identities=12% Similarity=0.064 Sum_probs=73.8
Q ss_pred eeEEEEEeEEcCCeEEEEEEc--cC----CCeEEEEEEEEeCCCcceeEEEEEEEeec---CCceeEEEEEEEeeCCCCe
Q 024666 144 TKCNAGLSYTHTDLIASLTLN--DK----GDTLNASYYHIVSPLTNTAVGAELTHSFS---SNENTLTIGTQHALDPLTS 214 (264)
Q Consensus 144 ~~~~~~~~Y~~~d~~~s~~~~--~~----~~~~~~Sy~~kv~~~~~~~~g~e~~~~~~---~~~~~~~vG~~y~ld~~~~ 214 (264)
..|.+++.|+-.++.+++-.+ +. .+.+.++.=..+.+. +.+++ .|.-. .......++..|.+ ..++
T Consensus 162 d~~~l~a~Yt~g~~~v~aaY~~d~ag~~D~~~~~l~~~y~fG~~--~~v~~--~Y~d~~d~~~~~~~gl~~~Y~v-~a~t 236 (289)
T 3prn_A 162 EEFGIAADWSNDMISLAAAYTTDAGGIVDNDIAFVGAAYKFNDA--GTVGL--NWYDNGLSTAGDQVTLYGNYAF-GATT 236 (289)
T ss_dssp CEEEEEEEEECSSEEEEEEEEESGGGCTTCCEEEEEEEECCSSS--EEEEE--EEEECTTSTTCSEEEEEEEEEE-TTEE
T ss_pred ceEEEEEEEecCCEEEEEEEeccCCCCCCccEEEEEEEEEcCCC--eEEEE--EEEccccccCCceEEEEEEeEe-cCeE
Confidence 467788888777777777544 10 135666666666644 23344 33322 23457889999999 8899
Q ss_pred EEEEEcCC------ceEEEEEEEeeCCCeEEEEEEEeeccccCCCceeEEEEEE
Q 024666 215 VKARVNNY------GRASALIQHEWRPKSLFTISGEVDTRAIEKSAKIGLALAL 262 (264)
Q Consensus 215 ~Kakv~s~------g~v~~~y~~kl~p~~~l~ls~~~d~~~~~~~~K~G~gl~l 262 (264)
+++.+.+. ...++.+++.|..+.+|..+-.=+-.. +....+|+.++|
T Consensus 237 v~a~y~D~~~~~~~t~yGIg~~YDLGgGasl~~gy~~~~~~-~~~ad~Gv~F~F 289 (289)
T 3prn_A 237 VRAYVSDIDRAGADTAYGIGADYQFAEGVKVSGSVQSGFAN-ETVADVGVRFDF 289 (289)
T ss_dssp EEEEEEEECSTTCCCEEEEEEEEEEETTEEEEEEEEECTTC-CEEEEEEEEEEC
T ss_pred EEEEEeccccCCCcceEEEEEEecCCCCeEEEEEEEEcCCC-ceEEeeeeEeeC
Confidence 99997632 358999999999999988876633210 114677776654
No 9
>2por_A Porin; HET: C8E; 1.80A {Rhodobacter capsulatus} SCOP: f.4.3.1 PDB: 3por_A*
Probab=67.12 E-value=60 Score=27.78 Aligned_cols=133 Identities=6% Similarity=0.000 Sum_probs=73.2
Q ss_pred CCcceEeEEEEeecC----CCcceeEEEEEeEEcCCeEEEEEEccC----------CCeEEEEEEEEeCCCcceeEEEEE
Q 024666 125 NNSVALGTDLSFDTA----TGNFTKCNAGLSYTHTDLIASLTLNDK----------GDTLNASYYHIVSPLTNTAVGAEL 190 (264)
Q Consensus 125 ~~~~~lG~e~~yd~~----~~~~~~~~~~~~Y~~~d~~~s~~~~~~----------~~~~~~Sy~~kv~~~~~~~~g~e~ 190 (264)
..+|.+++...+... ...-..|.+++.|...++.+.+-.... .+.+.++.-..+.+- .+++..
T Consensus 125 fgGf~~~a~Y~~~~~~~~~~~~~~~~~~~~~Y~~G~l~v~a~Y~~~~~~~~~~~~~~~~~~lgasY~~g~~---~l~~~Y 201 (301)
T 2por_A 125 AGAFSVAASMSDGKVGETSEDDAQEMAVAAAYTFGNYTVGLGYEKIDSPDTALMADMEQLELAAIAKFGAT---NVKAYY 201 (301)
T ss_dssp ETTEEEEEEECCSBSTTSSCBCCEEEEEEEEEEETTEEEEEEEEEEECSCTTTSCCEEEEEEEEEEEETTE---EEEEEE
T ss_pred eCCEEEEEEEEeCCCCCCCCCCCcEEEEEEEEEeCCeEEEEEEEEccCCCccccccccEEEEEEEEEEccE---EEEEEE
Confidence 456666665554321 112356778888887777777754320 012223222355442 334333
Q ss_pred EEeec--------------------CCceeEEEEE--EEeeCCCCeEEEEEc-----CCceEEEEEEEeeCCCeEEEEEE
Q 024666 191 THSFS--------------------SNENTLTIGT--QHALDPLTSVKARVN-----NYGRASALIQHEWRPKSLFTISG 243 (264)
Q Consensus 191 ~~~~~--------------------~~~~~~~vG~--~y~ld~~~~~Kakv~-----s~g~v~~~y~~kl~p~~~l~ls~ 243 (264)
..... .....+.+|. +|.+.+..++++... +...+++.|++.|.|++++-.+-
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lga~~~y~~~~~~~~~~~y~~~~~d~a~~~~lg~~Y~Ls~~~~lya~y 281 (301)
T 2por_A 202 ADGELDRDFARAVFDLTPVAAAATAVDHKAYGLSVDSTFGATTVGGYVQVLDIDTIDDVTYYGLGASYDLGGGASIVGGI 281 (301)
T ss_dssp EEEEEEHHHHHHHTTCCCCSSCCCEEEEEEEEEEEEEEETTEEEEEEEEEEEETTTEEEEEEEEEEEEEEETTEEEEEEE
T ss_pred EeccCccccccccccccccccccccccCceEEEEEEEeEEcCCcEEEEEEEEcCCCCcccEEEEEEEEcCCCCeEEEEEE
Confidence 32210 1234578888 888855544777653 23478999999999999987665
Q ss_pred EeeccccCCCceeEEEEE
Q 024666 244 EVDTRAIEKSAKIGLALA 261 (264)
Q Consensus 244 ~~d~~~~~~~~K~G~gl~ 261 (264)
..+-.+ +..-.+-+|+.
T Consensus 282 ~~~~~~-~~~~~~~~Gvr 298 (301)
T 2por_A 282 ADNDLP-NSDMVADLGVK 298 (301)
T ss_dssp EEECSS-SCCCEEEEEEE
T ss_pred EeccCC-CCceeEEEEeE
Confidence 544321 22234555554
No 10
>3bry_A TBUX; beta barrel, outer membrane protein, transport protein; HET: C8E; 3.20A {Ralstonia pickettii}
Probab=65.95 E-value=75 Score=28.49 Aligned_cols=20 Identities=10% Similarity=-0.014 Sum_probs=10.2
Q ss_pred EEEEEE-eCCcceEeEEEEee
Q 024666 118 NFSGVV-GNNSVALGTDLSFD 137 (264)
Q Consensus 118 ~~s~v~-~~~~~~lG~e~~yd 137 (264)
+.+.-. ..++|.+++++.|.
T Consensus 282 ~~g~~~~~~~~~~l~~d~~~~ 302 (441)
T 3bry_A 282 TVGISHQFNDQLSVSADYQRV 302 (441)
T ss_dssp EEEEEEESSSSEEEEEEEEEE
T ss_pred EEeEEEEeCCCEEEEEEEEEE
Confidence 443333 35566666665553
No 11
>1uyn_X NALP; autotransporter, translocator domain, membrane protein, OUTE membrane, beta-domain, beta-barrel; HET: CXE; 2.60A {Neisseria meningitidis} SCOP: f.4.5.1 PDB: 1uyo_X*
Probab=64.38 E-value=61 Score=27.73 Aligned_cols=63 Identities=14% Similarity=-0.032 Sum_probs=37.7
Q ss_pred eeEEEEEEEeec-CCceeEEEEEEEee-CCCCeEEEEE----------------cCCceEEEEEEEeeCCCeEEEEEEEe
Q 024666 184 TAVGAELTHSFS-SNENTLTIGTQHAL-DPLTSVKARV----------------NNYGRASALIQHEWRPKSLFTISGEV 245 (264)
Q Consensus 184 ~~~g~e~~~~~~-~~~~~~~vG~~y~l-d~~~~~Kakv----------------~s~g~v~~~y~~kl~p~~~l~ls~~~ 245 (264)
..+|+++.+... .-.....++++|.+ |++..+.+.+ .+...+++.++.++.+++++.++-+-
T Consensus 210 ~~lG~r~~~~~~~~~~~~~~~~~~h~~~~~~~~~~a~f~~~~~~~F~~~g~~~~~~~~~~g~G~~~~~~~~~~l~~~y~~ 289 (308)
T 1uyn_X 210 GLAGLKLSQPLSDKAVLFATAGVERDLNGRDYTVTGGFTGATAATGKTGARNMPHTRLVAGLGADVEFGNGWNGLARYSY 289 (308)
T ss_dssp EEEEEEEEEECSSSEEEEEEEEEEEESSCCCCCCCC-----------------CCEEEEEEEEEEEEEETTEEEEEEEEE
T ss_pred EeeeEEEEEEecCceEEEEEEEEEeccCCCCcceEEEeecCCCceEEEccccCCCceEEEeeeEEEEecCCEEEEEEEEE
Confidence 466777777663 22456788888887 3332332222 12346888999999887666555444
Q ss_pred e
Q 024666 246 D 246 (264)
Q Consensus 246 d 246 (264)
.
T Consensus 290 ~ 290 (308)
T 1uyn_X 290 A 290 (308)
T ss_dssp E
T ss_pred E
Confidence 3
No 12
>2wjr_A Probable N-acetylneuraminic acid outer membrane C protein NANC; cell membrane, ION transport, transmembrane, porin, membrane transport; HET: EPE; 1.80A {Escherichia coli} PDB: 2wjq_A*
Probab=60.61 E-value=16 Score=30.28 Aligned_cols=49 Identities=6% Similarity=-0.087 Sum_probs=29.4
Q ss_pred CCeEEEEEEEEeCCCcceeEEEEEEEeecCCceeEEEEEEEeeCCCCeE
Q 024666 167 GDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHALDPLTSV 215 (264)
Q Consensus 167 ~~~~~~Sy~~kv~~~~~~~~g~e~~~~~~~~~~~~~vG~~y~ld~~~~~ 215 (264)
+.++.++|-.|+++++-++.|..+.+......=..-|-+.|.++++..+
T Consensus 53 g~E~~~~Y~~k~~d~~~l~PG~~~~~~s~~~~YkPylk~~Y~fd~~~~~ 101 (214)
T 2wjr_A 53 DVQVEVNYAIKLDDQWTVRPGMLTHFSSNGTRYGPYVKLSWDATKDLNF 101 (214)
T ss_dssp EEEEEEEECEESSSSEEEEEEEEEEEETTEEEEEEEEEEEEEEETTEEE
T ss_pred cEEEEEEEEEEcCCCEEEecceEEEecCCCcEEeeEEEEeEEeCCCEEE
Confidence 5689999999999987666676666654322222233334555444333
No 13
>2lme_A Adhesin YADA; trimeric autotransporter, membrane protein, cell adhesion; NMR {Yersinia enterocolitica subsp}
Probab=58.53 E-value=26 Score=25.53 Aligned_cols=25 Identities=24% Similarity=0.363 Sum_probs=16.0
Q ss_pred CCceeEEEEEEEeeCCCCeEEEEEc
Q 024666 196 SNENTLTIGTQHALDPLTSVKARVN 220 (264)
Q Consensus 196 ~~~~~~~vG~~y~ld~~~~~Kakv~ 220 (264)
..+..++||+.|.++++..+|+.+.
T Consensus 64 ~g~~AvAvG~~~~~n~~~~~~~~~s 88 (105)
T 2lme_A 64 RSSQALAIGSGYRVNESVALKAGVA 88 (105)
T ss_dssp TTEEEEEEEEEEEESSSBCCEEEEE
T ss_pred CCceEEEEEEEEEeCCCEEEEEEEE
Confidence 3566677777777766666666543
No 14
>2vdf_A OPCA, outer membrane protein; invasin, adhesin, beta barrel; 1.95A {Neisseria meningitidis} SCOP: f.4.4.2 PDB: 1k24_A
Probab=50.56 E-value=1.1e+02 Score=25.61 Aligned_cols=20 Identities=35% Similarity=0.368 Sum_probs=12.2
Q ss_pred EEEEeCCCcceeEEEEEEEe
Q 024666 174 YYHIVSPLTNTAVGAELTHS 193 (264)
Q Consensus 174 y~~kv~~~~~~~~g~e~~~~ 193 (264)
|-|.++|.+.+.+|+.+.|.
T Consensus 98 YT~p~~d~~~~r~G~GlGy~ 117 (253)
T 2vdf_A 98 YTQTLSDSLNFRVGAGLGFE 117 (253)
T ss_dssp EEEEEETTEEEEEEEEEEEE
T ss_pred eccccccccceeeecccchh
Confidence 33567776555666666654
No 15
>3bs0_A TODX; beta barrel, outer membrane protein, transport protein; HET: C8E; 2.60A {Pseudomonas putida} PDB: 3brz_A*
Probab=47.72 E-value=1.5e+02 Score=26.43 Aligned_cols=95 Identities=9% Similarity=-0.016 Sum_probs=48.9
Q ss_pred CCe-EEEEEEE-eCCcceEeEEEEeecCCCcceeEEEEEeEEcCCeEEE----EEEccCCCeEEEEEEEEeCCCcceeEE
Q 024666 114 NPI-VNFSGVV-GNNSVALGTDLSFDTATGNFTKCNAGLSYTHTDLIAS----LTLNDKGDTLNASYYHIVSPLTNTAVG 187 (264)
Q Consensus 114 ~P~-~~~s~v~-~~~~~~lG~e~~yd~~~~~~~~~~~~~~Y~~~d~~~s----~~~~~~~~~~~~Sy~~kv~~~~~~~~g 187 (264)
-|. ++.+.-+ ..++|.+++++.|..=+..+....+ .+....-... ....| ...+.+..-++++++|.+.+|
T Consensus 277 lP~~~~~g~~~~~~~~~~l~~d~~~~~WS~~~~~l~~--~~~~~~~~~~~~~~~~~~d-~~~~~lG~ey~~~~~~~lRaG 353 (439)
T 3bs0_A 277 MPASLTLGLAHQFNERWVVAADIKRAYWGDVMDSMNV--AFISQLGGIDVALPHRYQD-ITVASIGTAYKYNNDLTLRAG 353 (439)
T ss_dssp CCCEEEEEEEEESSSSEEEEEEEEEECGGGCCC-CCC--EEEETTEEEEECCCCCCCC-EEEEEEEEEEECSSSEEEEEE
T ss_pred CCcEEEEeEEEEeCCCEEEEEEEEEEEccchhhheee--eecCCCCCccccCCCCcee-eeEEEEEEEEEcCCCEEEEEe
Confidence 455 5666666 5889999999887532210111111 1111110000 01123 234666777788888544444
Q ss_pred EEEEEee-----------cCCceeEEEEEEEeeCC
Q 024666 188 AELTHSF-----------SSNENTLTIGTQHALDP 211 (264)
Q Consensus 188 ~e~~~~~-----------~~~~~~~~vG~~y~ld~ 211 (264)
....-.. ......+++|..|++++
T Consensus 354 ~~yd~sp~~~~~~~~~~p~~~~~~~s~G~gy~~~~ 388 (439)
T 3bs0_A 354 YSYAQQALDSELILPVIPAYLKRHVTFGGEYDFDK 388 (439)
T ss_dssp EEECC------CCCTTSCCCCSEEEEEEEEEESSS
T ss_pred eEcccCCCCcccccccccCccceEEEeeeEEEcCC
Confidence 4333222 12456889999999864
No 16
>3vy8_X Outer membrane protein; beta-barrel, porin, channel; 2.12A {Neisseria meningitidis} PDB: 3a2r_X* 3a2t_X* 3a2u_X* 3a2s_X 3vy9_X 3vzt_X 3vzw_X*
Probab=42.59 E-value=1.8e+02 Score=25.61 Aligned_cols=115 Identities=7% Similarity=0.030 Sum_probs=67.7
Q ss_pred CCcceEeEEEEeecC--C--------CcceeEEEEEeEEcCCeEEEEE--EccC----------------------CCeE
Q 024666 125 NNSVALGTDLSFDTA--T--------GNFTKCNAGLSYTHTDLIASLT--LNDK----------------------GDTL 170 (264)
Q Consensus 125 ~~~~~lG~e~~yd~~--~--------~~~~~~~~~~~Y~~~d~~~s~~--~~~~----------------------~~~~ 170 (264)
..+|.+++...+.-. . ..-..|.+++.|....+.+.+- .... .+.+
T Consensus 155 f~G~~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~g~~~~~~a~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (355)
T 3vy8_X 155 FAGFSGSVQYVPRDNANDVDKYKHTKSSRESYHAGLKYENAGFFGQYAGSFAKYADLNTDAERVAVNTANAHPVKDYQVH 234 (355)
T ss_dssp BTTEEEEEEEECHHHHCSTTTTSCCSCCCCEEEEEEEEEETTEEEEEEEEEEEEEEECTTSCBCCTTCTTCEEEEEEEEE
T ss_pred cCCEEEEEEEEcCCCCCCccccccccCCCcEEEEEEEEecCCEEEEEEhhehhccccccccccccccccccccCCcceEE
Confidence 346677666554211 1 2234688899998888777665 2210 1123
Q ss_pred EEEEEEEeCCCcceeEEEEEEEeec------------CCceeEEEEEEEeeCCCCeEEEEE--------cC-------Cc
Q 024666 171 NASYYHIVSPLTNTAVGAELTHSFS------------SNENTLTIGTQHALDPLTSVKARV--------NN-------YG 223 (264)
Q Consensus 171 ~~Sy~~kv~~~~~~~~g~e~~~~~~------------~~~~~~~vG~~y~ld~~~~~Kakv--------~s-------~g 223 (264)
.+..-..+++ +.+++....... .+...++++++|.+++ .++++.. +. .-
T Consensus 235 ~lga~Yd~~~---~~laa~Y~~~~~~~~~~~~~~~~~~k~~~~~l~a~Y~~g~-~~~~~sY~~~~k~k~~~~~~~~~~~~ 310 (355)
T 3vy8_X 235 RVVAGYDAND---LYVSVAGQYEAAKNNEVGSIKGKKHEQTQVAATAAYRFGN-VTPRVSYAHGFKAKVNGVKDANYQYD 310 (355)
T ss_dssp EEEEEEEETT---EEEEEEEEEEEEEECSSSTTTTCEEEEEEEEEEEEECBTT-EEEEEEEEEECCEEETTEEEGGGCEE
T ss_pred EEEEEEEecC---EEEEEEEEEeccccccccccccccceeeEEEEEEEEEcCC-eEEEEEEEEeccccccccccCCCcce
Confidence 3333334443 355555443321 1346899999999965 6665533 21 22
Q ss_pred eEEEEEEEeeCCCeEEEEEE
Q 024666 224 RASALIQHEWRPKSLFTISG 243 (264)
Q Consensus 224 ~v~~~y~~kl~p~~~l~ls~ 243 (264)
.+.+.+.+.|+++.++-+..
T Consensus 311 ~~~vG~~Y~lsKrt~~Ya~y 330 (355)
T 3vy8_X 311 QVIVGADYDFSKRTSALVSA 330 (355)
T ss_dssp EEEEEEEEESSSSEEEEEEE
T ss_pred EEEEEEEEEcCCCeEEEEEE
Confidence 58999999999998877665
No 17
>1pho_A Phosphoporin; outer membrane protein; 3.00A {Escherichia coli} SCOP: f.4.3.1
Probab=41.08 E-value=1.7e+02 Score=24.88 Aligned_cols=134 Identities=7% Similarity=0.011 Sum_probs=74.5
Q ss_pred CcceEeEEEEeecCC-----CcceeEEEEEeEEcC--CeEEEEEEccC----------------CCeEEEEEEEEeCCCc
Q 024666 126 NSVALGTDLSFDTAT-----GNFTKCNAGLSYTHT--DLIASLTLNDK----------------GDTLNASYYHIVSPLT 182 (264)
Q Consensus 126 ~~~~lG~e~~yd~~~-----~~~~~~~~~~~Y~~~--d~~~s~~~~~~----------------~~~~~~Sy~~kv~~~~ 182 (264)
.+|.+++.....-.. ..-..|.+++.|..+ .+.+.+-.... .+.+.+..-..+.+-
T Consensus 143 ~G~~~~~~y~~~~~~~~~~~~~~~~~~~~~~Y~~g~~~l~~~a~Y~~~~~~~~~~~~~~~~~~~~~~~~~g~~Y~~g~~- 221 (330)
T 1pho_A 143 DGLNLTLQYQGKNENRDVKKQNGDGFGTSLTYDFGGSDFAISGAYTNSDRTNEQNLQSRGTGKRAEAWATGLKYDANNI- 221 (330)
T ss_dssp TTEEEEEEEECCBCSSCSTTCBCSEEEEEEEEEETTTTEEEEEEEEEEECCGGGTTSSSSCSSEEEEEEEEEEEEETTE-
T ss_pred CceEEEEEEecCCCCCccccccCCeEEEEEEEEcCCCCEEEEEEEEEecccccccccccCCccchheEEEEEEEEeCCE-
Confidence 455666554432211 123468888899887 77777654210 112233333344432
Q ss_pred ceeEEEEEEEeec---------CCceeEEEEEEEeeCCCCeEEEE-----Ec---------CCceEEEEEEEeeCCCeEE
Q 024666 183 NTAVGAELTHSFS---------SNENTLTIGTQHALDPLTSVKAR-----VN---------NYGRASALIQHEWRPKSLF 239 (264)
Q Consensus 183 ~~~~g~e~~~~~~---------~~~~~~~vG~~y~ld~~~~~Kak-----v~---------s~g~v~~~y~~kl~p~~~l 239 (264)
.+++-...... .+...+.+|++|.+.+...+.+- .+ ..-.+.+.+++.|+|...+
T Consensus 222 --~l~a~Y~~~~~~~~~~~~~~~~~~~~~~ga~Y~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~lg~~Y~LSKrT~l 299 (330)
T 1pho_A 222 --YLATFYSETRKMTPITGGFANKTQNFEAVAQYQFDFGLRPSLGYVLSKGKDIEGIGDEDLVNYIDVGATYYFNKNMSA 299 (330)
T ss_dssp --EEEEEEEEEESCSCCSSSSCSEEEEEEEEEEECCSSSEEEEEEEEEEEEESBTTTBCCEEEEEEEEEEEEESSSSEEE
T ss_pred --EEEEEEEeeEEccCCCCCcceeeEEEEEEEEEeecCCeeEEEEEEEecccCccCCCCcceEEEEEEEEEEEecCCEEE
Confidence 45554443321 12456889999999776666542 21 1235788899999999888
Q ss_pred EEEEEeeccc------cCCCceeEEEEEE
Q 024666 240 TISGEVDTRA------IEKSAKIGLALAL 262 (264)
Q Consensus 240 ~ls~~~d~~~------~~~~~K~G~gl~l 262 (264)
-.....+..+ ......+++|+..
T Consensus 300 Y~~y~~~~~~~~~~~~~~~~~~~~vGirh 328 (330)
T 1pho_A 300 FVDYKINQLDSDNKLNINNDDIVAVGMTY 328 (330)
T ss_dssp EEEEEEECCCSSCTTCCCCCCEEEEEEEE
T ss_pred EEEEEEccccCccccCCCCCcEEEEEEEE
Confidence 7755543321 0123467777653
No 18
>3kvn_X Esterase ESTA; beta barrel, alpha-beta-alpha motif, cell membrane, cell out membrane, hydrolase, membrane, transmembrane; HET: C8E; 2.50A {Pseudomonas aeruginosa}
Probab=40.77 E-value=2.4e+02 Score=26.62 Aligned_cols=63 Identities=11% Similarity=0.095 Sum_probs=43.2
Q ss_pred eeEEEEEEEeec-CCceeEEEEEEEee-CCCCeEEEEEcC----------------CceEEEEEEEeeCCCeEEEEEEEe
Q 024666 184 TAVGAELTHSFS-SNENTLTIGTQHAL-DPLTSVKARVNN----------------YGRASALIQHEWRPKSLFTISGEV 245 (264)
Q Consensus 184 ~~~g~e~~~~~~-~~~~~~~vG~~y~l-d~~~~~Kakv~s----------------~g~v~~~y~~kl~p~~~l~ls~~~ 245 (264)
..+|+++.+... .-...+.+++++.+ +++..+++++.. .+.+++..+.++.+++++.+..+-
T Consensus 534 ~~lG~r~~~~~~~~~~p~~~~~~~h~f~~~~~~~~~~f~~~~~~~f~~~g~~~~~~~~~~g~G~~~~~~~~~sl~~~y~~ 613 (632)
T 3kvn_X 534 LGAGLQGKYAFGSDTQLFAEYAHEREYEDDTQDLTMSLNSLPGNRFTLEGYTPQDHLNRVSLGFSQKLAPELSLRGGYNW 613 (632)
T ss_dssp EEEEEEEEEESSSSEEEEEEEEEEEESCCCCCEEEEEETTCTTCCEEEECCCCCSEEEEEEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEEEEEEecceEEEEEEEEEehhhCCCCcceEEEeecCCCCceEEccccCCCCEEEEEEEEEEEECCCEEEEEEEEE
Confidence 567888777765 33567778888888 444667776655 234789999999988776555444
Q ss_pred e
Q 024666 246 D 246 (264)
Q Consensus 246 d 246 (264)
.
T Consensus 614 ~ 614 (632)
T 3kvn_X 614 R 614 (632)
T ss_dssp E
T ss_pred E
Confidence 3
No 19
>3dwo_X Probable outer membrane protein; beta barrel; HET: C8E; 2.20A {Pseudomonas aeruginosa}
Probab=38.19 E-value=2.3e+02 Score=25.64 Aligned_cols=106 Identities=13% Similarity=0.106 Sum_probs=54.6
Q ss_pred eEEEEEEE-eCCcceEeEEEEeecCCCcceeEEEEEeEEcCCeEE--EEEEccCCCeEEEEEEEEeCCCcceeEEEEEEE
Q 024666 116 IVNFSGVV-GNNSVALGTDLSFDTATGNFTKCNAGLSYTHTDLIA--SLTLNDKGDTLNASYYHIVSPLTNTAVGAELTH 192 (264)
Q Consensus 116 ~~~~s~v~-~~~~~~lG~e~~yd~~~~~~~~~~~~~~Y~~~d~~~--s~~~~~~~~~~~~Sy~~kv~~~~~~~~g~e~~~ 192 (264)
.++.+.-+ ..++|.+.+++.|..-+. +....+ ... ..... .....| ...+.+..-++++++|.+.+|. .|
T Consensus 287 ~~~lg~~~~~~~~~~l~~d~~~~~wS~-~~~~~~--~~~-~~~~~~~~~~~~d-~~~~~lG~eY~~~~~~tlRaG~--~y 359 (451)
T 3dwo_X 287 YASLDWVHQFNDRLSLGASATWTEWSS-FQDLTL--KSH-GNTIVSIPYTYRN-TWTLAVGGDYKVTDQWTMRAGV--AY 359 (451)
T ss_dssp EEEEEEEEECSSSEEEEEEEEEECGGG-CCEEEE--EET-TEEEEEEECCCCC-EEEEEEEEEEESSSSEEEEEEE--EE
T ss_pred EEEEEEEEEeCCCEEEEEEEEEEEecC-cceeEE--EcC-CccccccccCcee-eeEEEEEEEEEeCCCEEEEEEE--EE
Confidence 35665555 478888888888753221 222221 111 11111 111233 2356677777888885444444 44
Q ss_pred eec-------------CCceeEEEEEEEeeC--CCCeEEEEEcCCceEEEEEEEeeCCCeE
Q 024666 193 SFS-------------SNENTLTIGTQHALD--PLTSVKARVNNYGRASALIQHEWRPKSL 238 (264)
Q Consensus 193 ~~~-------------~~~~~~~vG~~y~ld--~~~~~Kakv~s~g~v~~~y~~kl~p~~~ 238 (264)
... .....+++|..|+++ ++ ..+.+.|++......+
T Consensus 360 d~sp~~~~~~~~~~P~~~~~~~s~G~~y~~~~~~~----------~~ld~~y~y~~~~~~~ 410 (451)
T 3dwo_X 360 DQTPTHNATRDPRIPDGDRYFASLGAGYRFQSMPE----------LSIDAAYSRQFVKEVP 410 (451)
T ss_dssp ECCSCCTTTCCSSSCCCCEEEEEEEEEEECSSSSS----------EEEEEEEEEEEECCEE
T ss_pred ccCCCCcccccccccCCCCEEEEEeEEEEecCCCC----------eEEEEEEEEEEcCcce
Confidence 421 234568888888885 33 3555555555544433
No 20
>2fgq_X OMP32, outer membrane porin protein 32; malate, outer membrane protein, membrane protein; HET: BOG; 1.45A {Delftia acidovorans} SCOP: f.4.3.1 PDB: 2fgr_A 1e54_A
Probab=37.81 E-value=1.9e+02 Score=24.73 Aligned_cols=120 Identities=13% Similarity=0.071 Sum_probs=72.6
Q ss_pred CCcceEeEEEEeecCC------CcceeEEEEEeEEcCCeEEEEEEccC----------CCeEEEEEEEEeCCCcceeEEE
Q 024666 125 NNSVALGTDLSFDTAT------GNFTKCNAGLSYTHTDLIASLTLNDK----------GDTLNASYYHIVSPLTNTAVGA 188 (264)
Q Consensus 125 ~~~~~lG~e~~yd~~~------~~~~~~~~~~~Y~~~d~~~s~~~~~~----------~~~~~~Sy~~kv~~~~~~~~g~ 188 (264)
..+|.+++...+.-.. ..-..|.+++.|....+.+.+-.... .+.+.+..-.++.+- .+++
T Consensus 145 ~~G~~~~a~Y~~g~~~~~g~~~~~~~~~~~~~~Y~~g~~~~~~~Y~~~~~~~~~~~~~~~~~~~g~~Y~~g~~---~l~~ 221 (332)
T 2fgq_X 145 FGGFNAGFGYAFDEKQTIGTADSVGRYIGGYVAYDNGPLSASLGLAQQKTAVGGLATDRDEITLGASYNFGVA---KLSG 221 (332)
T ss_dssp BTTEEEEEEEECCTTCCBTTBSSTTCEEEEEEEEECSSEEEEEEEEEEEEEETTEEEEEEEEEEEEEEECSSC---EEEE
T ss_pred cCCEEEEEEEEcCCCCcCCCCCCCCcEEEEEEEEecCCEEEEEEEEEEecCCCCcccceEEEEEEEEEEECCE---EEEE
Confidence 4556777666553221 12346889999998888777654321 112223333355533 5555
Q ss_pred EEEEeec-------CCceeEEEEEEEeeCCCCeEEEEEcC---------CceEEEEEEEeeCCCeEEEEEEEeec
Q 024666 189 ELTHSFS-------SNENTLTIGTQHALDPLTSVKARVNN---------YGRASALIQHEWRPKSLFTISGEVDT 247 (264)
Q Consensus 189 e~~~~~~-------~~~~~~~vG~~y~ld~~~~~Kakv~s---------~g~v~~~y~~kl~p~~~l~ls~~~d~ 247 (264)
....... .+...+.+|++|.+.+...+++.... .-.+.+.+++.|++...+-.......
T Consensus 222 ~Y~~~~~~~~~~~~~~~~~~~~ga~y~~t~~~~~~~~y~~~~~~~~~~~~~~~~lg~~Y~LSKrT~lY~~~~~~~ 296 (332)
T 2fgq_X 222 LLQQTKFKRDIGGDIKTNSYMLGASAPVGGVGEVKLQYALYDQKAIDSKAHQITLGYVHNLSKRTALYGNLAFLK 296 (332)
T ss_dssp EEEEEEEEETTSCEEEEEEEEEEEEEEETTTEEEEEEEEEEEEGGGTEEEEEEEEEEEEESSSSEEEEEEEEEEE
T ss_pred EEEEEEccCCCCCcceeeEEEEEEEEEecCceEEEEEEEEEccCCCCCCeEEEEEEEEEccccchHheeeeeeEe
Confidence 4443321 13456899999999778778765321 13578899999999988877665543
No 21
>4e1s_A Intimin; outer membrane beta barrel, adhesin; HET: OLC OLB; 1.85A {Escherichia coli}
Probab=36.28 E-value=1.9e+02 Score=24.23 Aligned_cols=38 Identities=21% Similarity=0.233 Sum_probs=28.8
Q ss_pred CCcceEeEEEEeecCC-CcceeEEEEEeEEcCCeEEEEE
Q 024666 125 NNSVALGTDLSFDTAT-GNFTKCNAGLSYTHTDLIASLT 162 (264)
Q Consensus 125 ~~~~~lG~e~~yd~~~-~~~~~~~~~~~Y~~~d~~~s~~ 162 (264)
.++|.+|+.+.||..- +......+|+.|-.+.+.+++.
T Consensus 60 ~~~~m~G~N~FyD~d~~~~h~R~glG~E~~~d~l~lsaN 98 (242)
T 4e1s_A 60 LPANMLGYNVFIDQDFSGDNTRLGIGGEYWRDYFKSSVN 98 (242)
T ss_dssp CSSCEEEEEEEEEEETTTTEEEEEEEEEEEETTEEEEEE
T ss_pred cCCeEEEeEEEEeccCCCCceeEEeEEEEEecceEEEEE
Confidence 6789999999999763 3467788888887777665554
No 22
>1i78_A Protease VII; integral outer membrane protein, beta barrel, HYDR; HET: BOG; 2.60A {Escherichia coli} SCOP: f.4.4.1
Probab=35.22 E-value=2.2e+02 Score=24.53 Aligned_cols=213 Identities=10% Similarity=0.063 Sum_probs=104.5
Q ss_pred eecceEEEEEeeeeCCceeEEE-EEEEEee--Cc-eEEEEEEcCCCcEEEEEEEec-CCCCeEEEEEEE--ecCCCCcee
Q 024666 22 LVMHLQAITSSGVKKGELFLAD-VSTQLKN--KN-ITTDVKVDTNSNLFTTITVDE-PAPGLKSIFSFI--VPDQRSGKV 94 (264)
Q Consensus 22 ~~~~~v~~~s~~~~~~~~~~g~-l~~~y~~--~~-~~l~~~~~t~g~l~~~i~~~~-~~~glk~~~~~~--~p~~~~~k~ 94 (264)
-.+.+|+++... +.++|. -|--|.+ .+ ..=.-+|..+|.-....+..+ +.+.+++.++.. .+.....+-
T Consensus 7 ~~~~~~s~~~~~----G~l~Gk~~E~VY~~~~~~~~lSqL~W~~~n~~~~~~~~~~~l~~~~~l~~~g~~~~~~~sG~M~ 82 (297)
T 1i78_A 7 FTPDNINADISL----GTLSGKTKERVYLAEEGGRKVSQLDWKFNNAAIIKGAINWDLMPQISIGAAGWTTLGSRGGNMV 82 (297)
T ss_dssp CCTTCEEEEEEE----EEEEEEEEEEEEETTTTTEEEEEEEEEEEEEEEEEEEEEECCSSSEEEEEEEEEESSCEEEEEE
T ss_pred cCCCCEEEEEec----ceeeceeEEEEecCCCCCcEEEEEEeccCCCceEEEEEEEEecCCEEEEEEEEEeccCCCCcee
Confidence 345556665432 334443 3444543 12 333456776655444444444 778777777655 342111122
Q ss_pred EEEEeeccee-------e--eEEEeccCCCeEEEEEEE-eCCcceEeEEEEeecCCCcceeEEEEEeEEcCC----eEEE
Q 024666 95 ELQYQHEYAG-------I--STGIGFTANPIVNFSGVV-GNNSVALGTDLSFDTATGNFTKCNAGLSYTHTD----LIAS 160 (264)
Q Consensus 95 ~~~y~~~~~~-------~--~~~v~l~~~P~~~~s~v~-~~~~~~lG~e~~yd~~~~~~~~~~~~~~Y~~~d----~~~s 160 (264)
.-+|..+... . ++.++--..=.++....+ ..+++.+|+.+.|+...-+...+-....|..+. .+.+
T Consensus 83 D~DW~~~~~~~~~t~~S~h~~t~l~~a~~~dl~~~~~ll~~~~~~lg~~~Gy~y~~~~w~A~gG~~~Y~~~~~~~~~~~~ 162 (297)
T 1i78_A 83 DQDWMDSSNPGTWTDEARHPDTQLNYANEFDLNIKGWLLNEPNYRLGLMAGYQESRYSFTARGGSYIYSSEEGFRDDIGS 162 (297)
T ss_dssp EEECCCTTSTTSCSEEEEEEEEEEEEEEEEEEEEEEEEEECSSEEEEEEEEEEEEEEEEEEECCEEEBCCTTCSSCBCCB
T ss_pred eccCCCCCCCCCCccceecCCCCCcceEEEEEEeEEEEecCCceEEeEEcccEEEeeeeeecCceEEcCCCCcccccccc
Confidence 3333222111 0 111110001123333333 688899999999886533332222212232221 1111
Q ss_pred EEEccCCCeEEEEEEEEeCCCcceeEEEEEEEeecCCceeEEEEEEEe-----------eC--CCCeEEEEEcCCc--eE
Q 024666 161 LTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQHA-----------LD--PLTSVKARVNNYG--RA 225 (264)
Q Consensus 161 ~~~~~~~~~~~~Sy~~kv~~~~~~~~g~e~~~~~~~~~~~~~vG~~y~-----------ld--~~~~~Kakv~s~g--~v 225 (264)
. + .+....+|-|+..-- -+|....|... .-.+++..+|. .. ++.+++-+.++-. .+
T Consensus 163 ~---P-~~~~~I~Y~Q~~~~p---yiGL~g~y~~~--~~~l~~~~~~s~~v~a~~~D~H~~~rr~l~F~d~~~~~~~~~~ 233 (297)
T 1i78_A 163 F---P-NGERAIGYKQRFKMP---YIGLTGSYRYE--DFELGGTFKYSGWVESSDNDEHYDPKGRITYRSKVKDQNYYSV 233 (297)
T ss_dssp C---C-TTCSEEEEEEEEEEE---EEEEEEEEEET--TEEEEEEEEEEEEEEEEEEEEEECSSSCEEEEEEEEEEEEEEE
T ss_pred c---C-CCccceeEEEEEEee---eeeEEEEEeeC--cEEEEEEEecceeEEEeecchhhcccCCCcceeccCCCceEEE
Confidence 1 2 125667888876544 45666666553 23333333332 12 5566666666522 26
Q ss_pred EEEEEEeeCCCeEEEEEEEeec
Q 024666 226 SALIQHEWRPKSLFTISGEVDT 247 (264)
Q Consensus 226 ~~~y~~kl~p~~~l~ls~~~d~ 247 (264)
.+.+...|.|.++|-+.+....
T Consensus 234 ~~~~~Y~ltp~~sl~~e~~y~~ 255 (297)
T 1i78_A 234 AVNAGYYVTPNAKVYVEGAWNR 255 (297)
T ss_dssp EEEEEEEEETTEEEEEEEEEEE
T ss_pred EEEEEEecCCCEEEEEEEEEEe
Confidence 6777778888888888887764
No 23
>3vy8_X Outer membrane protein; beta-barrel, porin, channel; 2.12A {Neisseria meningitidis} PDB: 3a2r_X* 3a2t_X* 3a2u_X* 3a2s_X 3vy9_X 3vzt_X 3vzw_X*
Probab=29.88 E-value=2.8e+02 Score=24.23 Aligned_cols=42 Identities=12% Similarity=0.150 Sum_probs=22.5
Q ss_pred EEEEEec-CCCCeEEEEEEEe---cCC-----------CCceeEEEEeecceeeeEE
Q 024666 67 TTITVDE-PAPGLKSIFSFIV---PDQ-----------RSGKVELQYQHEYAGISTG 108 (264)
Q Consensus 67 ~~i~~~~-~~~glk~~~~~~~---p~~-----------~~~k~~~~y~~~~~~~~~~ 108 (264)
-.|.++. -..|+++.++-.. +.. ...-+.+.|....+.+.+.
T Consensus 146 n~v~Y~sp~f~G~~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~g~~~~~~a 202 (355)
T 3vy8_X 146 ISVRYDSPVFAGFSGSVQYVPRDNANDVDKYKHTKSSRESYHAGLKYENAGFFGQYA 202 (355)
T ss_dssp EEEEEECCCBTTEEEEEEEECHHHHCSTTTTSCCSCCCCEEEEEEEEEETTEEEEEE
T ss_pred EEEEEECCccCCEEEEEEEEcCCCCCCccccccccCCCcEEEEEEEEecCCEEEEEE
Confidence 4566664 3457776666553 111 1223667777766655444
No 24
>3nsg_A Outer membrane protein F; porin, beta barrel, beta barrel MEMB protein; HET: LDA TAM FLC TLA; 2.79A {Salmonella enterica subsp}
Probab=28.61 E-value=2.8e+02 Score=23.86 Aligned_cols=16 Identities=0% Similarity=-0.415 Sum_probs=10.2
Q ss_pred cCccceeecceEEEEE
Q 024666 16 LMINALLVMHLQAITS 31 (264)
Q Consensus 16 ~~~~~f~~~~~v~~~s 31 (264)
||+=.|+...++....
T Consensus 50 Gl~a~f~lE~gf~~~~ 65 (341)
T 3nsg_A 50 DLTGFGQWEYRTKADR 65 (341)
T ss_dssp SCEEEEEEEEEEECSS
T ss_pred CeEEEEEEEEeEecCC
Confidence 5566677777776643
No 25
>3pgu_A Long-chain fatty acid transport protein; outer membrane beta barrel, lipid transport, outer membrane; HET: C8E 2PE OLA; 1.70A {Escherichia coli k-12} SCOP: f.4.3.4 PDB: 3pgs_A* 1t16_A* 1t1l_A* 3dwn_A* 2r4p_A* 3pgr_A* 2r4n_A* 2r4l_A* 2r89_A 2r4o_A* 3pf1_A* 2r8a_A* 2r88_A
Probab=28.00 E-value=3.3e+02 Score=24.37 Aligned_cols=79 Identities=11% Similarity=-0.003 Sum_probs=44.9
Q ss_pred eEEEEEEEEeCCCcceeEEEEEEEee-----------cCCceeEEEEEEEeeCCCCeEEEEEcCCceEEEEEEEeeCCCe
Q 024666 169 TLNASYYHIVSPLTNTAVGAELTHSF-----------SSNENTLTIGTQHALDPLTSVKARVNNYGRASALIQHEWRPKS 237 (264)
Q Consensus 169 ~~~~Sy~~kv~~~~~~~~g~e~~~~~-----------~~~~~~~~vG~~y~ld~~~~~Kakv~s~g~v~~~y~~kl~p~~ 237 (264)
.+.+..-++++++|.+.+|....-.. ......+++|..|+++++ ..+.+.|++...+..
T Consensus 326 ~~~lG~eY~~~~~~~lRaG~~yd~spv~~~~~~~~~P~~d~~~~s~G~~y~~~~~----------~~id~ay~y~~~~~~ 395 (427)
T 3pgu_A 326 RIALGTTYYYDDNWTFRTGIAFDDSPVPAQNRSISIPDQDRFWLSAGTTYAFNKD----------ASVDVGVSYMHGQSV 395 (427)
T ss_dssp EEEEEEEEECSSSEEEEEEEEEEECCCCGGGCBTTBCCSCEEEEEEEEEEESSSS----------EEEEEEEEEEEECCE
T ss_pred EEEEEEEEEcCCCEEEEEEEEEccCCCCcccccccccCCCCEEEEEeEEEEcCCC----------cEEEEEEEEEecCcc
Confidence 46667777888886444454433332 123457888888888543 356666666666655
Q ss_pred EEE---EEEEeeccccCCCceeEEEEE
Q 024666 238 LFT---ISGEVDTRAIEKSAKIGLALA 261 (264)
Q Consensus 238 ~l~---ls~~~d~~~~~~~~K~G~gl~ 261 (264)
++. +.++.+. ..+=+|+++.
T Consensus 396 ~~~~~~~~~~~~~----~a~~~g~~~~ 418 (427)
T 3pgu_A 396 KINEGPYQFESEG----KAWLFGTNFN 418 (427)
T ss_dssp EEEETTEEEEEEE----EEEEEEEEEE
T ss_pred eEeccceEEEEEE----EEEEEEeecc
Confidence 553 3333322 2355565554
No 26
>2zfg_A Outer membrane protein F; OMPF porin, ordered waters, ION transport, phage recognition, transmembrane, transport; HET: C8E; 1.59A {Escherichia coli} SCOP: f.4.3.1 PDB: 1opf_A* 2omf_A* 2zld_A 3k19_A 3k1b_A 3o0e_A* 3poq_A* 3pou_A* 3pox_A* 3hw9_A* 3hwb_A* 1hxx_A 3fyx_A* 1bt9_A 1mpf_A* 1gfq_A* 1gfp_A* 1gfm_A* 1gfo_A* 1hxu_A ...
Probab=26.66 E-value=3e+02 Score=23.50 Aligned_cols=134 Identities=5% Similarity=-0.018 Sum_probs=73.6
Q ss_pred CcceEeEEEEeecCC-----CcceeEEEEEeEEcCCeEEEEEEccC-------------C---CeEEEEEEEEeCCCcce
Q 024666 126 NSVALGTDLSFDTAT-----GNFTKCNAGLSYTHTDLIASLTLNDK-------------G---DTLNASYYHIVSPLTNT 184 (264)
Q Consensus 126 ~~~~lG~e~~yd~~~-----~~~~~~~~~~~Y~~~d~~~s~~~~~~-------------~---~~~~~Sy~~kv~~~~~~ 184 (264)
.+|.+++.....-.. ..-..|.+++.|....+.+.+-.... . +.+.+..-.++.+ +
T Consensus 149 ~G~~~~~~y~~~~~~~~~~~~~~~~~~~~~~Y~~g~l~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~g~~Y~~~~---~ 225 (340)
T 2zfg_A 149 DGLNFAVQYLGKNERDTARRSNGDGVGGSISYEYEGFGIVGAYGAADRTNLQEAQPLGNGKKAEQWATGLKYDANN---I 225 (340)
T ss_dssp TTEEEEEEEECCBCCSSSTTCBCCEEEEEEEEEETTEEEEEEEEEEECCHHHHTSSBCCCSEEEEEEEEEEEEETT---E
T ss_pred CCeEEEEEEecCCCCCccccccCCeEEEEEEEecCCEEEEEEEEEecCcccccccccCCCceeeEEEEEEEEEcCC---E
Confidence 455666554432111 12346888888888887777654210 0 1122222224432 2
Q ss_pred eEEEEEEEeec---------------CCceeEEEEEEEeeCCCCeEEEEE-----c---------CCceEEEEEEEeeCC
Q 024666 185 AVGAELTHSFS---------------SNENTLTIGTQHALDPLTSVKARV-----N---------NYGRASALIQHEWRP 235 (264)
Q Consensus 185 ~~g~e~~~~~~---------------~~~~~~~vG~~y~ld~~~~~Kakv-----~---------s~g~v~~~y~~kl~p 235 (264)
.+++....... .+...+.++++|.+.+...+.+.. + ..-.+.+.+++.|++
T Consensus 226 ~l~a~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~ga~y~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~lg~~Y~lSK 305 (340)
T 2zfg_A 226 YLAANYGETRNATPITNKFTNTSGFANKTQDVLLVAQYQFDFGLRPSIAYTKSKAKDVEGIGDVDLVNYFEVGATYYFNK 305 (340)
T ss_dssp EEEEEEEEEESCSEEEETTTTEEEECSEEEEEEEEEEECCTTSEEEEEEEEEEEEEEETTTEEEEEEEEEEEEEEEEEET
T ss_pred EEEEEEEEEEecCcCCcccccccccceeEEEEEEEEEEEecCCeeEEEEEEEEeccccCCCCCcceEEEEEEEEEEEecC
Confidence 44544333211 134568899999997776665421 1 113688999999999
Q ss_pred CeEEEEEEEeeccc------cCCCceeEEEEEE
Q 024666 236 KSLFTISGEVDTRA------IEKSAKIGLALAL 262 (264)
Q Consensus 236 ~~~l~ls~~~d~~~------~~~~~K~G~gl~l 262 (264)
...+-.....+..+ .....-+++||..
T Consensus 306 rT~lY~~~~~~~~~~~~~~~~~~~~~~~vGirh 338 (340)
T 2zfg_A 306 NMSTYVDYIINQIDSDNKLGVGSDDTVAVGIVY 338 (340)
T ss_dssp TEEEEEEEEEECCCTTCTTCCCCBCEEEEEEEE
T ss_pred CeEEEEEEEEeccCCccccCCCCCcEEEEEEEE
Confidence 98887776554321 0123466777653
No 27
>4e1s_A Intimin; outer membrane beta barrel, adhesin; HET: OLC OLB; 1.85A {Escherichia coli}
Probab=26.38 E-value=1.6e+02 Score=24.67 Aligned_cols=30 Identities=13% Similarity=0.193 Sum_probs=17.7
Q ss_pred CccceeecceEEEEEeeeeC-CceeEEEEEE
Q 024666 17 MINALLVMHLQAITSSGVKK-GELFLADVST 46 (264)
Q Consensus 17 ~~~~f~~~~~v~~~s~~~~~-~~~~~g~l~~ 46 (264)
|.|.......+.|+-.+... .....++++.
T Consensus 24 l~Plyd~~~~l~F~Q~g~~~~d~r~t~N~Gl 54 (242)
T 4e1s_A 24 LLPFYDSEKMLAFGQVGARYIDSRFTANLGA 54 (242)
T ss_dssp EEEEEECSSEEEEEEEEEEEETTEEEEEEEE
T ss_pred EEeeEECCCeeEEEEcceEEcCCCeEEEEEE
Confidence 55666677777777655443 3455555444
No 28
>2fgq_X OMP32, outer membrane porin protein 32; malate, outer membrane protein, membrane protein; HET: BOG; 1.45A {Delftia acidovorans} SCOP: f.4.3.1 PDB: 2fgr_A 1e54_A
Probab=24.34 E-value=3.3e+02 Score=23.19 Aligned_cols=22 Identities=14% Similarity=0.147 Sum_probs=11.8
Q ss_pred cEEEEEEEec-CCCCeEEEEEEE
Q 024666 64 NLFTTITVDE-PAPGLKSIFSFI 85 (264)
Q Consensus 64 ~l~~~i~~~~-~~~glk~~~~~~ 85 (264)
..+-.|.++. -..|+++.+.-.
T Consensus 133 r~~N~i~Y~sp~~~G~~~~a~Y~ 155 (332)
T 2fgq_X 133 RANNLISYYTPNFGGFNAGFGYA 155 (332)
T ss_dssp EESSEEEEECCCBTTEEEEEEEE
T ss_pred CccceEEEcCCccCCEEEEEEEE
Confidence 3444556653 345666666555
No 29
>2x55_A Coagulase/fibrinolysin; transmembrane, aspartyl protease, cell outer membrane, OMPT protease, hydrolase; HET: C8E; 1.85A {Yersinia pestis} PDB: 2x56_A* 2x4m_A*
Probab=24.18 E-value=3.4e+02 Score=23.22 Aligned_cols=183 Identities=10% Similarity=0.034 Sum_probs=97.8
Q ss_pred EEEEEcCCCc--EEEEEEEecCCCCeEEEEEEE--ecCCCCceeEEEEeecce--------eeeEEEeccCCCeEEEEEE
Q 024666 55 TDVKVDTNSN--LFTTITVDEPAPGLKSIFSFI--VPDQRSGKVELQYQHEYA--------GISTGIGFTANPIVNFSGV 122 (264)
Q Consensus 55 l~~~~~t~g~--l~~~i~~~~~~~glk~~~~~~--~p~~~~~k~~~~y~~~~~--------~~~~~v~l~~~P~~~~s~v 122 (264)
=.-+|..+|. +.+++..+ +.+.+.+.++.. .+.....+-.-+|..+.. +-++.++--..=+++....
T Consensus 41 S~L~W~~~n~~~~~~~~~~~-~~~~~~l~~~g~~~l~~~sG~M~D~DW~~~~~~~~T~~S~h~~t~l~~a~~~dl~~~~~ 119 (293)
T 2x55_A 41 SQLDWKIKNVAILKGDISWD-PYSFLTLNARGWTSLASGSGNMDDYDWMNENQSEWTDHSSHPATNVNHANEYDLNVKGW 119 (293)
T ss_dssp EEEEEEEEEEEEEEEEEEEE-EETTEEEEEEEEEESSCEEEEEEEEECCCTTCSSCSEEEEEEEEEEEEEEEEEEEEEEE
T ss_pred EEEEeccCCCceEEEEEEEE-ecCCeEEEEEEEEeccCCCCceeeccCCCCCCCCCceeeecCCCCCceeEEEEEeeeEE
Confidence 3456666544 44445544 677777777663 232111122333322211 1111111100122333333
Q ss_pred E-eCCcceEeEEEEeecCCCcceeEEEEEeEEcCCeEEEEEEccCCCeEEEEEEEEeCCCcceeEEEEEEEeecCCceeE
Q 024666 123 V-GNNSVALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTL 201 (264)
Q Consensus 123 ~-~~~~~~lG~e~~yd~~~~~~~~~~~~~~Y~~~d~~~s~~~~~~~~~~~~Sy~~kv~~~~~~~~g~e~~~~~~~~~~~~ 201 (264)
+ ..+++.+|..+.|+...-+...+-....|....... ..-+ .....+|-|+..-- -+|....|... .-.+
T Consensus 120 ll~~~~~~lg~~~Gy~y~~~~w~A~gG~~~Y~~~~~~~--~~p~--~~~~I~Y~Q~~~~p---yiGL~g~yr~~--~~~l 190 (293)
T 2x55_A 120 LLQDENYKAGITAGYQETRFSWTATGGSYSYNNGAYTG--NFPK--GVRVIGYNQRFSMP---YIGLAGQYRIN--DFEL 190 (293)
T ss_dssp EEECSSEEEEEEEEEEEEEEEEEEESCEEEETTTTEEE--ECCT--TCEEEEEEEEEEEE---EEEEEEEEEET--TEEE
T ss_pred EEcCCCeEEeEEeceEEEeccccccCCcEEcCCCCccc--ccCC--CCcceeeEEEEEee---eeeEEEEEEec--cEEE
Confidence 3 688999999999987544333333222355444332 2222 36778999987654 56776677653 3444
Q ss_pred EEEEEEee-----------CCCCeEEEEEcCCc--eEEEEEEEeeCCCeEEEEEEEeec
Q 024666 202 TIGTQHAL-----------DPLTSVKARVNNYG--RASALIQHEWRPKSLFTISGEVDT 247 (264)
Q Consensus 202 ~vG~~y~l-----------d~~~~~Kakv~s~g--~v~~~y~~kl~p~~~l~ls~~~d~ 247 (264)
++..+|.. .++.++|-+.++-. .+.+.+...|.|.++|-+.+....
T Consensus 191 ~~~~~~s~~v~a~~~D~H~~R~l~F~d~~~~~~~~~~~~~~~Y~ltp~~sl~~e~~y~~ 249 (293)
T 2x55_A 191 NALFKFSDWVRAHDNDEHYMRDLTFREKTSGSRYYGTVINAGYYVTPNAKVFAEFTYSK 249 (293)
T ss_dssp EEEEEEEEEEEEEEEEEEGGGTEEEEEEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred EEEEecceeEEEecccHHhccCCccccccCCCceEEEEEEEEEecCCCEEEEEEEEEEe
Confidence 44444432 13456666666542 266777888999999999888875
No 30
>4e1t_A Invasin; outer membrane beta barrel, adhesin, integrin, cell adhesion; HET: OLC OLB; 2.26A {Yersinia pseudotuberculosis}
Probab=22.75 E-value=1.6e+02 Score=24.86 Aligned_cols=42 Identities=17% Similarity=0.080 Sum_probs=0.0
Q ss_pred cCCceEEEEEEEeeCCCeEEEEEEEeeccccCCCceeEEEEEE
Q 024666 220 NNYGRASALIQHEWRPKSLFTISGEVDTRAIEKSAKIGLALAL 262 (264)
Q Consensus 220 ~s~g~v~~~y~~kl~p~~~l~ls~~~d~~~~~~~~K~G~gl~l 262 (264)
...+.+|+.|.+-. +.+-+.+-+.+|+.--++..++|+|.+.
T Consensus 50 r~t~N~GlG~R~~~-~~wm~G~N~FyD~d~t~~h~R~glG~E~ 91 (245)
T 4e1t_A 50 RNTLNLGVGIRTLE-NGWLYGLNTFYDNDLTGHNHRIGLGAEA 91 (245)
T ss_dssp EEEEEEEEEEEEEE-TTEEEEEEEEEEEETTTTEEEEEEEEEE
T ss_pred CeEEEEeEEEEEec-CCEEEEeEEEEecCCCCCCceeEeEEEE
No 31
>3aeh_A Hemoglobin-binding protease HBP autotransporter; beta-barrel, auto-proteolytic, reaction intermediate, mutant membrane, cell outer membrane; 2.00A {Escherichia coli}
Probab=22.28 E-value=2.9e+02 Score=23.16 Aligned_cols=21 Identities=14% Similarity=0.115 Sum_probs=10.7
Q ss_pred eeEEEEEEEeeCCCCeEEEEE
Q 024666 199 NTLTIGTQHALDPLTSVKARV 219 (264)
Q Consensus 199 ~~~~vG~~y~ld~~~~~Kakv 219 (264)
..+.+|..+++.++..+-+.+
T Consensus 264 ~~~g~G~~~~l~~~~~l~~~~ 284 (308)
T 3aeh_A 264 MLYGVGLNARFGDNTRLGLEV 284 (308)
T ss_dssp EEEEEEEEEEETTTEEEEEEE
T ss_pred EEEEEEEEEEECCCEEEEEEE
Confidence 345555555555555444443
No 32
>2por_A Porin; HET: C8E; 1.80A {Rhodobacter capsulatus} SCOP: f.4.3.1 PDB: 3por_A*
Probab=21.98 E-value=3.6e+02 Score=22.70 Aligned_cols=23 Identities=13% Similarity=0.117 Sum_probs=15.2
Q ss_pred ceeEEEEEEEeeCCCCeEEEEEc
Q 024666 198 ENTLTIGTQHALDPLTSVKARVN 220 (264)
Q Consensus 198 ~~~~~vG~~y~ld~~~~~Kakv~ 220 (264)
...+.+|+.|.|.+++.+-+-+.
T Consensus 260 a~~~~lg~~Y~Ls~~~~lya~y~ 282 (301)
T 2por_A 260 VTYYGLGASYDLGGGASIVGGIA 282 (301)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEE
T ss_pred ccEEEEEEEEcCCCCeEEEEEEE
Confidence 34667777777777776666553
No 33
>3prn_A Porin; integral membrane protein, pore eyelet mutant, membra protein; HET: C8E; 1.90A {Rhodobacter blasticus} SCOP: f.4.3.1 PDB: 1bh3_A* 1prn_A* 7prn_A* 6prn_A* 5prn_A* 2prn_A* 8prn_A* 1h6s_1
Probab=21.44 E-value=3.9e+02 Score=22.92 Aligned_cols=127 Identities=13% Similarity=0.091 Sum_probs=71.7
Q ss_pred eEEEEeecceeeeEEEeccC--------CCeEEEEEEEeCCcceEeEEEEeecCC-CcceeEEEEEeEEcC-CeEEEEEE
Q 024666 94 VELQYQHEYAGISTGIGFTA--------NPIVNFSGVVGNNSVALGTDLSFDTAT-GNFTKCNAGLSYTHT-DLIASLTL 163 (264)
Q Consensus 94 ~~~~y~~~~~~~~~~v~l~~--------~P~~~~s~v~~~~~~~lG~e~~yd~~~-~~~~~~~~~~~Y~~~-d~~~s~~~ 163 (264)
+.++|.-..+.+..+..... ...+...+.+....+.+++-...|... .....|-++++|.-. .+.+.+..
T Consensus 133 l~~~ys~Ggfs~~~Sy~~~~~~~~~~~~~d~~~l~a~Yt~g~~~v~aaY~~d~ag~~D~~~~~l~~~y~fG~~~~v~~~Y 212 (289)
T 3prn_A 133 IAVTYSISGVNLYLSYVDPDQTVDSSLVTEEFGIAADWSNDMISLAAAYTTDAGGIVDNDIAFVGAAYKFNDAGTVGLNW 212 (289)
T ss_dssp EEEEEECSSEEEEEEEEETTTTSCGGGSCCEEEEEEEEECSSEEEEEEEEESGGGCTTCCEEEEEEEECCSSSEEEEEEE
T ss_pred EEEEEEecCEEEEEEEEccCCCcccccccceEEEEEEEecCCEEEEEEEeccCCCCCCccEEEEEEEEEcCCCeEEEEEE
Confidence 55566655555554444322 122333444444444444432211111 112467788888877 88888877
Q ss_pred ccC-----CCeEEEEEEEEeCCCcceeEEEEEE-EeecCCceeEEEEEEEeeCCCCeEEEEEcCCc
Q 024666 164 NDK-----GDTLNASYYHIVSPLTNTAVGAELT-HSFSSNENTLTIGTQHALDPLTSVKARVNNYG 223 (264)
Q Consensus 164 ~~~-----~~~~~~Sy~~kv~~~~~~~~g~e~~-~~~~~~~~~~~vG~~y~ld~~~~~Kakv~s~g 223 (264)
.+. .+.+.++.=.++ .. +.+.+-+. .......+...||++|+|-+.+++++-+....
T Consensus 213 ~d~~d~~~~~~~gl~~~Y~v-~a--~tv~a~y~D~~~~~~~t~yGIg~~YDLGgGasl~~gy~~~~ 275 (289)
T 3prn_A 213 YDNGLSTAGDQVTLYGNYAF-GA--TTVRAYVSDIDRAGADTAYGIGADYQFAEGVKVSGSVQSGF 275 (289)
T ss_dssp EECTTSTTCSEEEEEEEEEE-TT--EEEEEEEEEECSTTCCCEEEEEEEEEEETTEEEEEEEEECT
T ss_pred EccccccCCceEEEEEEeEe-cC--eEEEEEEeccccCCCcceEEEEEEecCCCCeEEEEEEEEcC
Confidence 652 234666666667 33 24444333 11123568999999999988999998876543
Done!