BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024668
(264 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4ACJ|A Chain A, Crystal Structure Of The Tldc Domain Of Oxidation
Resistance Protein 2 From Zebrafish
Length = 167
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 54/100 (54%), Gaps = 1/100 (1%)
Query: 154 LLRKEYAWHIGGALSPHELE-EWKLLYHSAMNGLSFNTFLGSISNDEGSAVLIIKDKEGH 212
LL E + L P + W L + ++ +G+S T ++ + + +L+IKD +G
Sbjct: 7 LLEAEQIEKLAKHLPPRTIGYPWNLAFSTSKHGMSIKTLYRAMQDQDSPMLLVIKDSDGQ 66
Query: 213 IYGGYASQPWERHGDFYGDMKSFLFQLYPKLAIYRPTGAN 252
I+G AS+P++ FYG ++FLF YP+ Y+ TG N
Sbjct: 67 IFGALASEPFKVSEGFYGTGETFLFTFYPEFEAYKWTGDN 106
>pdb|2I2R|E Chain E, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|F Chain F, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|G Chain G, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|H Chain H, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|M Chain M, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|N Chain N, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|O Chain O, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|P Chain P, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
Length = 180
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 42/83 (50%)
Query: 14 LTFEDLVVAKATYEKGTKDEIEEFIYQLLDVNDDGVLGRSDLESVVIAMLEIIFSMEISE 73
+ FED V A + +GT E + + L D+N DG + + ++ +V A+ +++ +
Sbjct: 70 VKFEDFVTALSILLRGTVHEKLRWTFNLYDINKDGYINKEEMMDIVKAIYDMMGAYTYPV 129
Query: 74 RGSNSHQDIVDVFLNAATFSKNG 96
++ + VDVF +K+G
Sbjct: 130 LAEDTPRQHVDVFFQKMDKNKDG 152
>pdb|1G8I|A Chain A, Crystal Structure Of Human Frequenin (Neuronal Calcium
Sensor 1)
pdb|1G8I|B Chain B, Crystal Structure Of Human Frequenin (Neuronal Calcium
Sensor 1)
pdb|2LCP|A Chain A, Nmr Structure Of Calcium Loaded, Un-Myristoylated Human
Ncs-1
Length = 190
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/119 (21%), Positives = 64/119 (53%), Gaps = 9/119 (7%)
Query: 1 MFNLVTQKRNDHKLTFEDLVVAKATYEKGTKDEIEEFIYQLLDVNDDGVLGRSDLESVVI 60
+FN+ + + D ++ F + + A + +GT DE + ++L D+++DG + R+++ +V
Sbjct: 68 VFNVFDENK-DGRIEFSEFIQALSVTSRGTLDEKLRWAFKLYDLDNDGYITRNEMLDIVD 126
Query: 61 AMLEII-FSMEISERGSNSHQDIVDVFLNAATFSKNGERSSNKSMSFEDFRSWCTLIPS 118
A+ +++ ++E+ E + + + +F A KN ++ ++ ++F+ PS
Sbjct: 127 AIYQMVGNTVELPEEENTPEKRVDRIF---AMMDKN----ADGKLTLQEFQEGSKADPS 178
>pdb|1S6C|A Chain A, Crystal Structure Of The Complex Between Kchip1 And Kv4.2
N1-30
Length = 183
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 41/83 (49%)
Query: 14 LTFEDLVVAKATYEKGTKDEIEEFIYQLLDVNDDGVLGRSDLESVVIAMLEIIFSMEISE 73
+ FED V A + +GT E + + L D+N DG + + ++ +V A+ +++
Sbjct: 73 VKFEDFVTALSILLRGTVHEKLRWTFNLYDINKDGYINKEEMMDIVKAIYDMMGKYTYPV 132
Query: 74 RGSNSHQDIVDVFLNAATFSKNG 96
++ + VDVF +K+G
Sbjct: 133 LKEDTPRQHVDVFFQKMDKNKDG 155
>pdb|1S1E|A Chain A, Crystal Structure Of Kv Channel-Interacting Protein 1
(Kchip-1)
Length = 224
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 41/83 (49%)
Query: 14 LTFEDLVVAKATYEKGTKDEIEEFIYQLLDVNDDGVLGRSDLESVVIAMLEIIFSMEISE 73
+ FED V A + +GT E + + L D+N DG + + ++ +V A+ +++
Sbjct: 106 VKFEDFVTALSILLRGTVHEKLRWTFNLYDINKDGYINKEEMMDIVKAIYDMMGKYTYPV 165
Query: 74 RGSNSHQDIVDVFLNAATFSKNG 96
++ + VDVF +K+G
Sbjct: 166 LKEDTPRQHVDVFFQKMDKNKDG 188
>pdb|2NZ0|A Chain A, Crystal Structure Of Potassium Channel Kv4.3 In Complex
With Its Regulatory Subunit Kchip1 (Casp Target)
pdb|2NZ0|C Chain C, Crystal Structure Of Potassium Channel Kv4.3 In Complex
With Its Regulatory Subunit Kchip1 (Casp Target)
Length = 180
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 41/83 (49%)
Query: 14 LTFEDLVVAKATYEKGTKDEIEEFIYQLLDVNDDGVLGRSDLESVVIAMLEIIFSMEISE 73
+ FED V A + +GT E + + L D+N DG + + ++ +V A+ +++
Sbjct: 70 VKFEDFVTALSILLRGTVHEKLRWTFNLYDINKDGYINKEEMMDIVKAIYDMMGKYTYPV 129
Query: 74 RGSNSHQDIVDVFLNAATFSKNG 96
++ + VDVF +K+G
Sbjct: 130 LKEDTPRQHVDVFFQKMDKNKDG 152
>pdb|1FPW|A Chain A, Structure Of Yeast Frequenin
pdb|2JU0|A Chain A, Structure Of Yeast Frequenin Bound To Pdtins 4-Kinase
Length = 190
Score = 34.3 bits (77), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 24/115 (20%), Positives = 59/115 (51%), Gaps = 8/115 (6%)
Query: 5 VTQKRNDHKLTFEDLVVAKATYEKGTKDEIEEFIYQLLDVNDDGVLGRSDLESVVIAMLE 64
V K N+ + FE+ + +T +GT +E + ++L D+N DG + ++ ++V ++ +
Sbjct: 71 VFDKDNNGFIHFEEFITVLSTTSRGTLEEKLSWAFELYDLNHDGYITFDEMLTIVASVYK 130
Query: 65 IIFSM-EISERGSNSHQDIVDVFLNAATFSKNGERSSNKSMSFEDFRSWCTLIPS 118
++ SM ++E + + +F K +++ + ++ ++FR + PS
Sbjct: 131 MMGSMVTLNEDEATPEMRVKKIF-------KLMDKNEDGYITLDEFREGSKVDPS 178
>pdb|2JUL|A Chain A, Nmr Structure Of Dream
Length = 256
Score = 31.6 bits (70), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 16 FEDLVVAKATYEKGTKDEIEEFIYQLLDVNDDGVLGRSDLESVVIAMLEIIFSM 69
FED VV + +GT E ++ + L D+N DG + + ++ +A+++ I+ M
Sbjct: 148 FEDFVVGLSILLRGTVHEKLKWAFNLYDINKDGCITKEEM----LAIMKSIYDM 197
>pdb|1DGU|A Chain A, Homology-Based Model Of Calcium-Saturated Cib (Calcium-And
Integrin-Binding Protein)
pdb|1DGV|A Chain A, Homology-Based Model Of Apo Cib (Calcium-And Integrin-
Binding Protein)
pdb|1XO5|A Chain A, Crystal Structure Of Cib1, An Ef-Hand, Integrin And
Kinase- Binding Protein
pdb|1XO5|B Chain B, Crystal Structure Of Cib1, An Ef-Hand, Integrin And
Kinase- Binding Protein
pdb|1Y1A|A Chain A, Crystal Structure Of Calcium And Integrin Binding Protein
pdb|1Y1A|B Chain B, Crystal Structure Of Calcium And Integrin Binding Protein
Length = 183
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 14 LTFEDLVVAKATY-EKGTKDEIEEFIYQLLDVNDDGVLGRSDLESVV 59
L+FED + + + + T D + +++ D +DDG L R DL +V
Sbjct: 78 LSFEDFLDLLSVFSDTATPDIKSHYAFRIFDFDDDGTLNREDLSRLV 124
>pdb|2HET|A Chain A, Non-Myristoylated Bovine Recoverin (Truncated At
C-Terminus) With Calcium Bound To Ef-Hand 3
pdb|2HET|B Chain B, Non-Myristoylated Bovine Recoverin (Truncated At
C-Terminus) With Calcium Bound To Ef-Hand 3
pdb|2HET|C Chain C, Non-Myristoylated Bovine Recoverin (Truncated At
C-Terminus) With Calcium Bound To Ef-Hand 3
pdb|2HET|D Chain D, Non-Myristoylated Bovine Recoverin (Truncated At
C-Terminus) With Calcium Bound To Ef-Hand 3
Length = 189
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 33/57 (57%)
Query: 10 NDHKLTFEDLVVAKATYEKGTKDEIEEFIYQLLDVNDDGVLGRSDLESVVIAMLEII 66
+D L F++ V+A G ++ E+ + L DV+ +G + ++++ +V A+ ++I
Sbjct: 76 SDGTLDFKEYVIALHMTSAGKTNQKLEWAFSLYDVDGNGTISKNEVLEIVTAIFKMI 132
>pdb|1OMR|A Chain A, Non-Myristoylated Wild-Type Bovine Recoverin With Calcium
Bound To Ef- Hand 3
pdb|1REC|A Chain A, Three-Dimensional Structure Of Recoverin, A Calcium Sensor
In Vision
pdb|1IKU|A Chain A, Myristoylated Recoverin In The Calcium-Free State, Nmr, 22
Structures
Length = 201
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 33/57 (57%)
Query: 10 NDHKLTFEDLVVAKATYEKGTKDEIEEFIYQLLDVNDDGVLGRSDLESVVIAMLEII 66
+D L F++ V+A G ++ E+ + L DV+ +G + ++++ +V A+ ++I
Sbjct: 76 SDGTLDFKEYVIALHMTSAGKTNQKLEWAFSLYDVDGNGTISKNEVLEIVTAIFKMI 132
>pdb|2I94|A Chain A, Nmr Structure Of Recoverin Bound To Rhodopsin Kinase
Length = 202
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 33/57 (57%)
Query: 10 NDHKLTFEDLVVAKATYEKGTKDEIEEFIYQLLDVNDDGVLGRSDLESVVIAMLEII 66
+D L F++ V+A G ++ E+ + L DV+ +G + ++++ +V A+ ++I
Sbjct: 77 SDGTLDFKEYVIALHMTSAGKTNQKLEWAFSLYDVDGNGTISKNEVLEIVTAIFKMI 133
>pdb|2L4H|A Chain A, The Solution Structure Of Calcium Bound Cib1
pdb|2L4I|A Chain A, The Solution Structure Of Magnesium Bound Cib1
pdb|2LM5|A Chain A, Solution Structure Of Ca2+-Cib1 In Complex With The
Cytoplasmic Domain Of The Integrin Aiib Subunit
Length = 214
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 14 LTFEDLVVAKATY-EKGTKDEIEEFIYQLLDVNDDGVLGRSDLESVV 59
L+FED + + + + T D + +++ D +DDG L R DL +V
Sbjct: 109 LSFEDFLDLLSVFSDTATPDIKSHYAFRIFDFDDDGTLNREDLSRLV 155
>pdb|1JSA|A Chain A, Myristoylated Recoverin With Two Calciums Bound, Nmr, 24
Structures
Length = 201
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 33/57 (57%)
Query: 10 NDHKLTFEDLVVAKATYEKGTKDEIEEFIYQLLDVNDDGVLGRSDLESVVIAMLEII 66
+D L F++ V+A G ++ E+ + L DV+ +G + ++++ +V A+ ++I
Sbjct: 76 SDGTLDFKEYVIALHMTSAGKTNQKLEWAFSLYDVDGNGTISKNEVLEIVTAIFKMI 132
>pdb|1OMV|A Chain A, Non-Myristoylated Bovine Recoverin (E85q Mutant) With
Calcium Bound To Ef-Hand 3
Length = 201
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 32/57 (56%)
Query: 10 NDHKLTFEDLVVAKATYEKGTKDEIEEFIYQLLDVNDDGVLGRSDLESVVIAMLEII 66
+D L F+ V+A G ++ E+ + L DV+ +G + ++++ +V A+ ++I
Sbjct: 76 SDGTLDFKQYVIALHMTSAGKTNQKLEWAFSLYDVDGNGTISKNEVLEIVTAIFKMI 132
>pdb|1LA3|A Chain A, Solution Structure Of Recoverin Mutant, E85q
Length = 201
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 32/57 (56%)
Query: 10 NDHKLTFEDLVVAKATYEKGTKDEIEEFIYQLLDVNDDGVLGRSDLESVVIAMLEII 66
+D L F+ V+A G ++ E+ + L DV+ +G + ++++ +V A+ ++I
Sbjct: 76 SDGTLDFKQYVIALHMTSAGKTNQKLEWAFSLYDVDGNGTISKNEVLEIVTAIFKMI 132
>pdb|3O2Q|A Chain A, Crystal Structure Of The Human Symplekin-Ssu72-Ctd
Phosphopeptide Complex
pdb|3O2Q|D Chain D, Crystal Structure Of The Human Symplekin-Ssu72-Ctd
Phosphopeptide Complex
pdb|3O2S|A Chain A, Crystal Structure Of The Human Symplekin-Ssu72 Complex
pdb|4H3H|A Chain A, Crystal Structure Of A Ternary Complex Of Human Symplekin
Ntd, Human Ssu72 And A Rna Poymerase Ii Ctd Peptide
Phosphorylated At Ser-7
pdb|4H3H|D Chain D, Crystal Structure Of A Ternary Complex Of Human Symplekin
Ntd, Human Ssu72 And A Rna Poymerase Ii Ctd Peptide
Phosphorylated At Ser-7
pdb|4H3K|A Chain A, Crystal Structure Of A Ternary Complex Of Human Symplekin
Ntd, Human Ssu72 And A Rna Polymerase Ii Ctd Peptide
Phosphorylated At Ser-2, Ser-5 And Ser-7
pdb|4H3K|D Chain D, Crystal Structure Of A Ternary Complex Of Human Symplekin
Ntd, Human Ssu72 And A Rna Polymerase Ii Ctd Peptide
Phosphorylated At Ser-2, Ser-5 And Ser-7
Length = 351
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 9/84 (10%)
Query: 119 ARKFLGGLLTPPDPGRPGCQVPRL----LCSENVHSSMLLLRKEYAWHIGGALSPHELEE 174
A KF+ GL+ P ++PR + + + ++ W G A LE+
Sbjct: 174 AIKFVEGLIVTLSPRMADSEIPRRQEHDISLDRIPRDHPYIQYNVLWEEGKA----ALEQ 229
Query: 175 W-KLLYHSAMNGLSFNTFLGSISN 197
K + H A++ ++ T LGS++N
Sbjct: 230 LLKFMVHPAISSINLTTALGSLAN 253
>pdb|3O2T|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human
Symplekin
Length = 386
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 9/84 (10%)
Query: 119 ARKFLGGLLTPPDPGRPGCQVPRL----LCSENVHSSMLLLRKEYAWHIGGALSPHELEE 174
A KF+ GL+ P ++PR + + + ++ W G A LE+
Sbjct: 174 AIKFVEGLIVTLSPRMADSEIPRRQEHDISLDRIPRDHPYIQYNVLWEEGKA----ALEQ 229
Query: 175 W-KLLYHSAMNGLSFNTFLGSISN 197
K + H A++ ++ T LGS++N
Sbjct: 230 LLKFMVHPAISSINLTTALGSLAN 253
>pdb|3ODR|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human
Symplekin
Length = 415
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 9/84 (10%)
Query: 119 ARKFLGGLLTPPDPGRPGCQVPRL----LCSENVHSSMLLLRKEYAWHIGGALSPHELEE 174
A KF+ GL+ P ++PR + + + ++ W G A LE+
Sbjct: 203 AIKFVEGLIVTLSPRMADSEIPRRQEHDISLDRIPRDHPYIQYNVLWEEGKA----ALEQ 258
Query: 175 W-KLLYHSAMNGLSFNTFLGSISN 197
K + H A++ ++ T LGS++N
Sbjct: 259 LLKFMVHPAISSINLTTALGSLAN 282
>pdb|3JPZ|A Chain A, Crystal Structure Of Lombricine Kinase
pdb|3JPZ|B Chain B, Crystal Structure Of Lombricine Kinase
pdb|3JQ3|A Chain A, Crystal Structure Of Lombricine Kinase, Complexed With
Substrate Adp
Length = 366
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 16 FEDLVVAKATYEKGTKDEIEEFIYQLLDVNDDGVLGRSDLESV--VIAMLEIIFSMEISE 73
FED+VVA ++GT E + + D+++ L +S+ E V +I ++ + ME +
Sbjct: 295 FEDIVVALQLQKRGTGGEHTAAVDDVYDISNAARLKKSEREFVQLLIDGVKKLIDMEQAL 354
Query: 74 RGSNSHQDIV 83
S D++
Sbjct: 355 EAGKSIDDLI 364
>pdb|2D8N|A Chain A, Crystal Structure Of Human Recoverin At 2.2 A Resolution
Length = 207
Score = 27.7 bits (60), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 31/56 (55%)
Query: 11 DHKLTFEDLVVAKATYEKGTKDEIEEFIYQLLDVNDDGVLGRSDLESVVIAMLEII 66
D L F++ V+A G ++ E+ + L DV+ +G + ++++ +V A+ + I
Sbjct: 85 DGTLDFKEYVIALHXTTAGKTNQKLEWAFSLYDVDGNGTISKNEVLEIVXAIFKXI 140
>pdb|3DD4|A Chain A, Structural Basis Of Kchip4a Modulation Of Kv4.3 Slow
Inactivation
Length = 229
Score = 27.3 bits (59), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 18/89 (20%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
Query: 10 NDHK--LTFEDLVVAKATYEKGTKDEIEEFIYQLLDVNDDGVLGRSDLESVVIAMLEIIF 67
DH ++FED + + +GT E + + L D+N DG + + ++ ++ A+ +++
Sbjct: 113 TDHNGAVSFEDFIKGLSILLRGTVQEKLNWAFNLYDINKDGYITKEEMLDIMKAIYDMMG 172
Query: 68 SMEISERGSNSHQDIVDVFLNAATFSKNG 96
++ + V+ F +K+G
Sbjct: 173 KCTYPVLKEDAPRQHVETFFQKMDKNKDG 201
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,486,001
Number of Sequences: 62578
Number of extensions: 370178
Number of successful extensions: 1166
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1148
Number of HSP's gapped (non-prelim): 26
length of query: 264
length of database: 14,973,337
effective HSP length: 97
effective length of query: 167
effective length of database: 8,903,271
effective search space: 1486846257
effective search space used: 1486846257
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)