BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024669
(264 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SAC0|ZCIS_ARATH 15-cis-zeta-carotene isomerase, chloroplastic OS=Arabidopsis
thaliana GN=Z-ISO PE=1 SV=1
Length = 367
Score = 316 bits (809), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 152/209 (72%), Positives = 181/209 (86%), Gaps = 3/209 (1%)
Query: 58 PAKQKIVLVRS--RTETGSGTDSDTDLATLAGEDSAAFDLKNQKLTSWVYFSVILGVVLF 115
P +KI LVRS R + +DS++ L GEDSAAF+L QKL SWVYF V+LGVVLF
Sbjct: 50 PVIRKI-LVRSTLREDQPIASDSESSPTLLIGEDSAAFELGKQKLVSWVYFGVVLGVVLF 108
Query: 116 LLQLLWIDNSTGYGKAFIDSVSSLSDSHEVVMLVLILIFATVHSGLASLRDMGEKVIGAR 175
+L ++WIDNSTG+GK+FID+VS++S S EV ML+LILIFA VHSGLASLRD+GEK+IG R
Sbjct: 109 ILNVVWIDNSTGFGKSFIDAVSNISGSPEVAMLMLILIFAIVHSGLASLRDIGEKLIGER 168
Query: 176 AYRVLFAGVSLPLAVSTIVYFINHRYDGMQLWQLQGAPGVHQIVWLSSFVSFFFLYPSTF 235
A+RVLFAG+SLPLA+STIVYFINHRYDG QLWQLQG PGVH+ +W+++FVSFFFLYPSTF
Sbjct: 169 AFRVLFAGISLPLAMSTIVYFINHRYDGSQLWQLQGVPGVHEAIWVANFVSFFFLYPSTF 228
Query: 236 NLLEVAAVDEPKMHLWETGVMRITRHPQV 264
NLLEVAAVD+PKMHLWETG+MRITRHPQ+
Sbjct: 229 NLLEVAAVDKPKMHLWETGIMRITRHPQM 257
>sp|B4FHU1|ZCIS_MAIZE 15-cis-zeta-carotene isomerase, chloroplastic OS=Zea mays PE=1 SV=1
Length = 366
Score = 273 bits (697), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 137/221 (61%), Positives = 173/221 (78%), Gaps = 1/221 (0%)
Query: 45 APPCPLT-LFFNSNPAKQKIVLVRSRTETGSGTDSDTDLATLAGEDSAAFDLKNQKLTSW 103
AP PL+ + ++ PA+ + + + D L GEDSAAF+LK+Q + SW
Sbjct: 36 APLPPLSRVLSHARPARAVGGGIEPKEGVVAEGDESGGGPVLVGEDSAAFELKDQSVASW 95
Query: 104 VYFSVILGVVLFLLQLLWIDNSTGYGKAFIDSVSSLSDSHEVVMLVLILIFATVHSGLAS 163
YF+ ILG VL L +LWID STG G F+D+V+S+SDSHEVVML+L +IFA VHSG+AS
Sbjct: 96 AYFAGILGAVLVALNVLWIDPSTGVGTKFLDAVASVSDSHEVVMLLLTIIFAVVHSGMAS 155
Query: 164 LRDMGEKVIGARAYRVLFAGVSLPLAVSTIVYFINHRYDGMQLWQLQGAPGVHQIVWLSS 223
LR+ GEK++G R YRVLFAG+SLPLAV+TIVYFINHRYDG QLWQ+QG G+H+++W SS
Sbjct: 156 LRESGEKIVGERVYRVLFAGISLPLAVTTIVYFINHRYDGTQLWQVQGITGIHELLWFSS 215
Query: 224 FVSFFFLYPSTFNLLEVAAVDEPKMHLWETGVMRITRHPQV 264
F+SFFFLYPSTFNLLEVAAVD+PK+H+WETG+MRITRHPQ+
Sbjct: 216 FISFFFLYPSTFNLLEVAAVDKPKLHMWETGIMRITRHPQM 256
>sp|Q70LC2|Y807_AFV1Y Putative transmembrane protein ORF807 OS=Acidianus filamentous
virus 1 (isolate United States/Yellowstone) GN=ORF807
PE=4 SV=1
Length = 807
Score = 37.4 bits (85), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 50/99 (50%), Gaps = 8/99 (8%)
Query: 143 HEVVMLVLILIFATVHSGLASLRDMGEKVIGARAYRVLFAGVSLPLAVSTIVYFINHRYD 202
+EV+ML+ +LI+A + AS D ++G + AGV+ + V+ IVYF +Y
Sbjct: 208 YEVLMLICLLIYAGCY---ASYSD----ILGKNGLSTVGAGVNAKVPVTAIVYFDTQQYI 260
Query: 203 GMQLW-QLQGAPGVHQIVWLSSFVSFFFLYPSTFNLLEV 240
+ QL ++ ++W+ + F + P +L++
Sbjct: 261 QQNVVSQLNVTIQLYALIWVGISTTNFVILPEISQILKM 299
>sp|Q9LSF0|PTR34_ARATH Probable peptide/nitrate transporter At3g25260 OS=Arabidopsis
thaliana GN=At3g25260 PE=2 SV=1
Length = 515
Score = 34.3 bits (77), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 4/51 (7%)
Query: 96 KNQKLTS----WVYFSVILGVVLFLLQLLWIDNSTGYGKAFIDSVSSLSDS 142
+NQ+L S W +FSV LG L + ++WI+ + G+ +F S + L+ +
Sbjct: 164 RNQRLISGFFNWYFFSVCLGGFLAVTLMVWIEENIGWSSSFTISTAVLASA 214
>sp|Q9LSE8|PTR35_ARATH Putative peptide/nitrate transporter At3g25280 OS=Arabidopsis
thaliana GN=At3g25280 PE=1 SV=1
Length = 521
Score = 32.7 bits (73), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 83 ATLAGEDSAAFDLKNQKLTS----WVYFSVILGVVLFLLQLLWIDNSTGYGKAFIDSVSS 138
A+L D +N +L S W+YFS+ G +L + +LWI+ G+ +F SV
Sbjct: 151 ASLPSHGGDQIDRRNPRLISRFFDWLYFSICSGCLLAVTVVLWIEEKKGWIWSFNISVGI 210
Query: 139 LSDS 142
L+ +
Sbjct: 211 LATA 214
>sp|Q6CBS9|ATG27_YARLI Autophagy-related protein 27 OS=Yarrowia lipolytica (strain CLIB
122 / E 150) GN=ATG27 PE=3 SV=1
Length = 276
Score = 32.3 bits (72), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 102 SWVYFSVILGVVLFLLQLLWIDNSTGYGKAFIDSVSSLSDSHEVVMLVLILIFATVHSGL 161
+W++ ++LGV ++++ WI N YG A +D + +V L+ LI V +
Sbjct: 208 TWLFIIIVLGVAVYIIGNAWI-NYDRYGNAGVDLLPHADSLRDVPYLIRDLIAKVVGTFT 266
Query: 162 ASLR 165
S R
Sbjct: 267 GSSR 270
>sp|P29322|EPHA8_HUMAN Ephrin type-A receptor 8 OS=Homo sapiens GN=EPHA8 PE=1 SV=2
Length = 1005
Score = 32.0 bits (71), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
Query: 57 NPAKQKIVLVRSRTETGSGTDSDTDLATLAGEDSAAFDLKNQKLTSWVYFSVILGVVLFL 116
P + + VR+RT G G S + G+ +D + W+ ++I G+V+ L
Sbjct: 503 KPGTRYVFQVRARTSAGCGRFSQA-MEVETGKPRPRYDTRT---IVWICLTLITGLVVLL 558
Query: 117 LQLLWIDNSTGYGKAFIDS 135
L L+ GY KAF DS
Sbjct: 559 LLLICKKRHCGYSKAFQDS 577
>sp|O09127|EPHA8_MOUSE Ephrin type-A receptor 8 OS=Mus musculus GN=Epha8 PE=1 SV=2
Length = 1004
Score = 31.6 bits (70), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
Query: 57 NPAKQKIVLVRSRTETGSGTDSDTDLATLAGEDSAAFDLKNQKLTSWVYFSVILGVVLFL 116
P + + VR+RT G G S + G+ +D + W+ ++I G+V+ L
Sbjct: 502 KPGTRYVFQVRARTSAGCGRFSQA-MEVETGKPRPRYDTRT---IVWICLTLITGLVVLL 557
Query: 117 LQLLWIDNSTGYGKAFIDS 135
L L+ GY KAF DS
Sbjct: 558 LLLICKKRHCGYSKAFQDS 576
>sp|Q5TM68|MDC1_MACMU Mediator of DNA damage checkpoint protein 1 OS=Macaca mulatta
GN=MDC1 PE=3 SV=1
Length = 2173
Score = 31.2 bits (69), Expect = 8.9, Method: Composition-based stats.
Identities = 23/94 (24%), Positives = 42/94 (44%), Gaps = 1/94 (1%)
Query: 12 SVPRIKKEAFANIRTKRDASTSASVSIS-CKLKPAPPCPLTLFFNSNPAKQKIVLVRSRT 70
+VP K +A I + D S +++ +LK + P + A ++L RS+T
Sbjct: 390 AVPLEKSQASMVINSDTDDEEEVSAALTLARLKESQPAVWNRDAEEDMAHHAVLLQRSQT 449
Query: 71 ETGSGTDSDTDLATLAGEDSAAFDLKNQKLTSWV 104
TG +D+D + L E+ + K+ + V
Sbjct: 450 TTGRDSDTDVEEEELPVENKQTVPKAHTKIRALV 483
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.134 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,876,725
Number of Sequences: 539616
Number of extensions: 3557543
Number of successful extensions: 9250
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 9239
Number of HSP's gapped (non-prelim): 25
length of query: 264
length of database: 191,569,459
effective HSP length: 115
effective length of query: 149
effective length of database: 129,513,619
effective search space: 19297529231
effective search space used: 19297529231
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)