Query 024669
Match_columns 264
No_of_seqs 65 out of 67
Neff 1.9
Searched_HMMs 29240
Date Mon Mar 25 12:21:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024669.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024669hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2nwl_A GLTPH, glutamate sympor 48.8 19 0.00065 32.9 4.7 70 96-177 8-86 (422)
2 3hfe_A Potassium voltage-gated 42.0 5.1 0.00017 26.3 -0.1 13 167-179 3-15 (31)
3 4efh_B Protein spire; cytoskel 26.5 9.8 0.00034 28.2 -0.8 37 13-52 2-41 (66)
4 1kqf_C FDH-N gamma, formate de 22.4 34 0.0012 27.1 1.5 62 97-163 112-174 (217)
5 4a2n_B Isoprenylcysteine carbo 22.3 11 0.00038 30.7 -1.3 19 245-263 110-128 (194)
6 4hb7_A Dihydropteroate synthas 16.2 62 0.0021 28.6 1.9 24 118-141 165-188 (270)
7 1vf5_B Subunit IV; photosynthe 15.0 34 0.0011 28.0 -0.0 39 197-236 22-63 (160)
8 2dco_A S1P4 first extracellula 13.4 51 0.0017 21.9 0.5 21 162-182 4-24 (34)
9 1eye_A DHPS 1, dihydropteroate 13.1 75 0.0026 27.6 1.6 19 119-137 173-191 (280)
10 1qfw_M FV, antibody (anti beta 12.5 3.1E+02 0.011 18.3 4.3 26 30-55 13-38 (108)
No 1
>2nwl_A GLTPH, glutamate symport protein; alpha helical, membrane protein, helical hairpin, unwound RE transport protein; HET: PLM; 2.96A {Pyrococcus horikoshii} PDB: 2nww_A* 1xfh_A* 2nwx_A* 3v8g_A 3v8f_A 3kbc_A
Probab=48.85 E-value=19 Score=32.88 Aligned_cols=70 Identities=21% Similarity=0.382 Sum_probs=45.1
Q ss_pred CccceehhhHHHHHHHHHHHhhhe---------eeeeCCCCcchhHHHHhhccCCChHHHHHHHHHHHHHHhcccccccc
Q 024669 96 KNQKLTSWVYFSVILGVVLFLLQL---------LWIDNSTGYGKAFIDSVSSLSDSHEVVMLVLILIFATVHSGLASLRD 166 (264)
Q Consensus 96 ~~Qk~~sW~yF~~ilgvVL~~l~v---------~Widp~TG~G~~fi~~vs~ls~Sh~~vmL~Lll~FAi~HSGlAsLR~ 166 (264)
.+.++.-|+..+.++|+++..+.- .|++| +|+-|++.+ -|+..-++|.-+=+|.++++.
T Consensus 8 ~~~~l~~~ili~lvlGi~~G~~~~~~~~~~~~~~~~~~---~G~lFi~ll---------kmiv~PLVf~siv~gia~l~~ 75 (422)
T 2nwl_A 8 IEYPVLIKILIGLILGAIVGLILGHYGYAHAVHTYVKP---FGDLFVRLL---------KMLVMPIVFASLVVGAASISP 75 (422)
T ss_dssp --CCCTTHHHHHHHHHHHHHHHHHHTTTHHHHHHHTHH---HHHHHHHHH---------HHHHHHHHHHHHHHHTTSCTT
T ss_pred HhCCHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHH---HHHHHHHHH---------HHHHHHHHHHHHHHHHHhcch
Confidence 345677788899999998887642 13322 355555543 477777777777789999983
Q ss_pred chhhhhcchhh
Q 024669 167 MGEKVIGARAY 177 (264)
Q Consensus 167 ~gE~~IG~Ray 177 (264)
+.-.++|-|.-
T Consensus 76 ~~~gri~~~ti 86 (422)
T 2nwl_A 76 ARLGRVGVKIV 86 (422)
T ss_dssp TTHHHHHHHHH
T ss_pred hhhhhHHHHHH
Confidence 33345666653
No 2
>3hfe_A Potassium voltage-gated channel subfamily KQT MEM; trimer, atrial fibrillation, cell membrane, cytoplasmic VESI deafness, disease mutation; 1.70A {Homo sapiens} PDB: 3hfc_A
Probab=42.04 E-value=5.1 Score=26.29 Aligned_cols=13 Identities=54% Similarity=0.746 Sum_probs=9.4
Q ss_pred chhhhhcchhhhh
Q 024669 167 MGEKVIGARAYRV 179 (264)
Q Consensus 167 ~gE~~IG~RayRv 179 (264)
.|-.-||+|+||+
T Consensus 3 ~g~nTIGaRLnRv 15 (31)
T 3hfe_A 3 RGSNTIGARLNRV 15 (31)
T ss_dssp --CCSHHHHHHHH
T ss_pred cCcchHHHHHHHH
Confidence 3455699999997
No 3
>4efh_B Protein spire; cytoskeleton, contractIle protein, contractIle protein-trans protein complex; HET: ADP; 2.48A {Drosophila melanogaster} PDB: 3ue5_B*
Probab=26.47 E-value=9.8 Score=28.19 Aligned_cols=37 Identities=24% Similarity=0.130 Sum_probs=21.9
Q ss_pred ccchhhhhhhcccccc---ccCcceeeEEEeeeccCCCCCcee
Q 024669 13 VPRIKKEAFANIRTKR---DASTSASVSISCKLKPAPPCPLTL 52 (264)
Q Consensus 13 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~lk~~~~c~~~~ 52 (264)
-||+||.|.+-|-... -.-.-+ -.-||||.++++.+|
T Consensus 2 pprvkk~AheiILefiRSrppL~~v---s~rklkp~~~~~~sL 41 (66)
T 4efh_B 2 PLGSKKDAHAMILEFIRSRPPLKKA---SDRQLGPPRMCEPSP 41 (66)
T ss_pred CCcccccHHHHHHHHHhcccchhhh---hhcccCCCCCCcCCH
Confidence 3899999877654331 111111 234788888887765
No 4
>1kqf_C FDH-N gamma, formate dehydrogenase, nitrate-inducible, cytochr B556(FDN) subunit; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: f.21.1.1 PDB: 1kqg_C*
Probab=22.41 E-value=34 Score=27.09 Aligned_cols=62 Identities=18% Similarity=0.293 Sum_probs=35.9
Q ss_pred ccceehhhHHHHHHHHHHHhhheeeeeCCCCcchhH-HHHhhccCCChHHHHHHHHHHHHHHhccccc
Q 024669 97 NQKLTSWVYFSVILGVVLFLLQLLWIDNSTGYGKAF-IDSVSSLSDSHEVVMLVLILIFATVHSGLAS 163 (264)
Q Consensus 97 ~Qk~~sW~yF~~ilgvVL~~l~v~Widp~TG~G~~f-i~~vs~ls~Sh~~vmL~Lll~FAi~HSGlAs 163 (264)
-||+.-|+.+..++..++..+.. |-. ++|..| .+.......=|+..+ .++++|.++|-.+|-
T Consensus 112 ~~~~~~~~l~~l~~~~~~TG~~~-~~~---~~~~~~~~~~~~~~~~iH~~~a-~~l~~~v~~Hv~~al 174 (217)
T 1kqf_C 112 GQKMMFWSIMSMIFVLLVTGVII-WRP---YFAQYFPMQVVRYSLLIHAAAG-IILIHAILIHMYMAF 174 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT-CTT---TTGGGSCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHH---hhhhhcCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 56777788777777777766653 322 344222 111222234475555 555678889998874
No 5
>4a2n_B Isoprenylcysteine carboxyl methyltransferase; membrane protein, RAS and RHO gtpases signallin; HET: SAH PLM CDL; 3.40A {Methanosarcina acetivorans}
Probab=22.32 E-value=11 Score=30.73 Aligned_cols=19 Identities=26% Similarity=0.480 Sum_probs=16.3
Q ss_pred CCceeeeeceeeeeecCCC
Q 024669 245 EPKMHLWETGVMRITRHPQ 263 (264)
Q Consensus 245 KPqvHLyETGIiRITRHPQ 263 (264)
++.-+|-.+|+-|++|||+
T Consensus 110 ~~~~~Lvt~G~y~~vRHP~ 128 (194)
T 4a2n_B 110 KDGHKLVKEGIYKNIRHPM 128 (194)
T ss_dssp ETTCCCCCSSTTTTBSSHH
T ss_pred CCCCeeeecCcchhccCcc
Confidence 3556799999999999995
No 6
>4hb7_A Dihydropteroate synthase; transferase; 1.95A {Staphylococcus aureus} PDB: 1ad1_A 1ad4_A*
Probab=16.16 E-value=62 Score=28.60 Aligned_cols=24 Identities=17% Similarity=0.526 Sum_probs=18.5
Q ss_pred heeeeeCCCCcchhHHHHhhccCC
Q 024669 118 QLLWIDNSTGYGKAFIDSVSSLSD 141 (264)
Q Consensus 118 ~v~Widp~TG~G~~fi~~vs~ls~ 141 (264)
.=+++||+-||||..-+.++-+..
T Consensus 165 ~~IilDPGiGFgKt~~~N~~ll~~ 188 (270)
T 4hb7_A 165 NKIWLDPGIGFAKTRNEEAEVMAR 188 (270)
T ss_dssp GGEEEECCTTSSCCHHHHHHHHTC
T ss_pred ceEEEeCCCCcccccccHHHHHhh
Confidence 358999999999987776665443
No 7
>1vf5_B Subunit IV; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.32.1.1 PDB: 2d2c_B* 2e74_B* 2e75_B* 2e76_B* 2zt9_B* 1q90_D*
Probab=15.02 E-value=34 Score=28.04 Aligned_cols=39 Identities=23% Similarity=0.432 Sum_probs=22.3
Q ss_pred hhccccceeeceecCCCceeehhhhh---hhhhhhhccccccc
Q 024669 197 INHRYDGMQLWQLQGAPGVHQIVWLS---SFVSFFFLYPSTFN 236 (264)
Q Consensus 197 inHRYDGvqLW~lqgvpgv~~lVW~l---saISFlFLYPaTFN 236 (264)
.||-+||++.|- ++.-|+-.++.++ .++.+.|.+|..++
T Consensus 22 ~~sn~dkiPFhP-KDll~~~~v~~~l~l~~l~~l~~f~P~~Lg 63 (160)
T 1vf5_B 22 MGHNYYGEPAWP-NDLLYVFPVVIMGTFACIVALSVLDPAMVG 63 (160)
T ss_dssp SCCSSCCCCSCC-STTTTTHHHHHHHHHHHHHHHHHHSCCBCC
T ss_pred CCCCCCeeecCh-hHHHHHHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 478899999998 4443322222222 22344577787543
No 8
>2dco_A S1P4 first extracellular loop peptidomimetic; coiled coil, disulfide, helix-turn-helix, 3-10 helix, membrane protein; NMR {Homo sapiens}
Probab=13.44 E-value=51 Score=21.85 Aligned_cols=21 Identities=33% Similarity=0.455 Sum_probs=17.4
Q ss_pred cccccchhhhhcchhhhhhhh
Q 024669 162 ASLRDMGEKVIGARAYRVLFA 182 (264)
Q Consensus 162 AsLR~~gE~~IG~RayRvlFA 182 (264)
-+.|.-+|-+-|+|.+|+-=|
T Consensus 4 dayrtdce~LSG~rTFrLaPa 24 (34)
T 2dco_A 4 DAYRTDCEELSGARTFRLAPA 24 (34)
T ss_dssp GGTHHHHHHHHTGGGGTSSSS
T ss_pred chhhcchhhhcCcceEEechH
Confidence 467889999999999998544
No 9
>1eye_A DHPS 1, dihydropteroate synthase I; alpha-beta barrel, transferase; HET: PMM; 1.70A {Mycobacterium tuberculosis H37RV} SCOP: c.1.21.1
Probab=13.12 E-value=75 Score=27.60 Aligned_cols=19 Identities=21% Similarity=0.291 Sum_probs=14.8
Q ss_pred eeeeeCCCCcchhHHHHhh
Q 024669 119 LLWIDNSTGYGKAFIDSVS 137 (264)
Q Consensus 119 v~Widp~TG~G~~fi~~vs 137 (264)
=+++||..||||..-+.++
T Consensus 173 ~IilDPg~Gf~k~~~~n~~ 191 (280)
T 1eye_A 173 RLVLDPGLGFAKTAQHNWA 191 (280)
T ss_dssp GEEEECCTTSSCCHHHHHH
T ss_pred hEEEECCCCcccCHHHHHH
Confidence 3899999999998754443
No 10
>1qfw_M FV, antibody (anti beta subunit) (light chain); glycoprotein hormone; HET: NAG; 3.50A {Mus musculus} SCOP: b.1.1.1
Probab=12.51 E-value=3.1e+02 Score=18.28 Aligned_cols=26 Identities=19% Similarity=0.321 Sum_probs=16.3
Q ss_pred cCcceeeEEEeeeccCCCCCceeecc
Q 024669 30 ASTSASVSISCKLKPAPPCPLTLFFN 55 (264)
Q Consensus 30 ~~~~~~~~~~~~lk~~~~c~~~~f~n 55 (264)
+....+|.|.|..+..+.-.+.-|.+
T Consensus 13 v~~G~~v~L~C~~~~~~~~~v~W~r~ 38 (108)
T 1qfw_M 13 MSVGERVTLSCKASETVDSFVSWYQQ 38 (108)
T ss_dssp CCTTCCEEEEEEESSCCCSCEEEEEE
T ss_pred EcCCCCEEEEeeeCCCCCcEEEEEEE
Confidence 34456899999998765323444443
Done!