Query 024670
Match_columns 264
No_of_seqs 247 out of 1359
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 06:29:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024670.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024670hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00083 HLH Helix-loop-helix d 99.4 2.3E-13 5.1E-18 96.2 6.1 54 73-126 4-60 (60)
2 cd04897 ACT_ACR_3 ACT domain-c 99.4 1.6E-12 3.4E-17 97.5 10.0 72 159-231 3-74 (75)
3 PF00010 HLH: Helix-loop-helix 99.4 3.8E-13 8.2E-18 94.4 5.5 49 74-122 2-55 (55)
4 smart00353 HLH helix loop heli 99.4 7.1E-13 1.5E-17 91.8 6.1 49 78-126 1-52 (53)
5 cd04896 ACT_ACR-like_3 ACT dom 99.3 6.9E-12 1.5E-16 94.0 9.5 71 159-231 2-74 (75)
6 cd04895 ACT_ACR_1 ACT domain-c 99.3 1E-11 2.3E-16 92.4 9.6 68 158-226 2-69 (72)
7 KOG1318 Helix loop helix trans 99.2 7.6E-11 1.7E-15 112.7 11.5 62 67-128 227-292 (411)
8 cd04927 ACT_ACR-like_2 Second 99.1 1E-09 2.2E-14 82.0 10.0 70 159-230 2-72 (76)
9 cd04900 ACT_UUR-like_1 ACT dom 99.0 2.3E-09 5E-14 79.0 9.8 70 158-228 2-72 (73)
10 cd04925 ACT_ACR_2 ACT domain-c 99.0 6.3E-09 1.4E-13 77.2 10.2 72 159-230 2-73 (74)
11 PRK05007 PII uridylyl-transfer 98.7 5.8E-08 1.3E-12 101.9 11.6 74 156-231 807-880 (884)
12 PRK01759 glnD PII uridylyl-tra 98.7 1.8E-07 4E-12 97.9 13.5 72 156-229 782-853 (854)
13 cd04928 ACT_TyrKc Uncharacteri 98.6 3.4E-07 7.4E-12 67.4 9.1 64 159-229 3-67 (68)
14 KOG4304 Transcriptional repres 98.6 6.3E-08 1.4E-12 88.0 4.6 55 72-126 31-93 (250)
15 cd04899 ACT_ACR-UUR-like_2 C-t 98.5 1.1E-06 2.4E-11 63.2 9.6 68 159-228 2-69 (70)
16 KOG1319 bHLHZip transcription 98.5 9.1E-08 2E-12 82.7 4.3 56 74-129 63-125 (229)
17 cd04926 ACT_ACR_4 C-terminal 98.5 1.5E-06 3.3E-11 64.0 9.7 67 158-226 2-68 (72)
18 PRK04374 PII uridylyl-transfer 98.5 9.8E-07 2.1E-11 92.6 11.9 73 156-230 795-867 (869)
19 PRK00275 glnD PII uridylyl-tra 98.5 1.3E-06 2.8E-11 92.0 12.3 75 156-231 813-887 (895)
20 KOG3561 Aryl-hydrocarbon recep 98.5 1.7E-07 3.6E-12 96.5 5.1 51 74-124 21-75 (803)
21 PRK05092 PII uridylyl-transfer 98.3 9.2E-06 2E-10 86.0 12.9 75 156-231 842-916 (931)
22 PRK03059 PII uridylyl-transfer 98.2 7E-06 1.5E-10 86.2 11.5 71 156-230 785-855 (856)
23 COG2844 GlnD UTP:GlnB (protein 98.2 5.6E-06 1.2E-10 85.1 9.7 72 156-229 790-861 (867)
24 TIGR01693 UTase_glnD [Protein- 98.2 7.8E-06 1.7E-10 85.7 11.1 72 156-229 778-849 (850)
25 PRK03381 PII uridylyl-transfer 98.2 9.9E-06 2.1E-10 84.2 11.5 68 156-226 706-773 (774)
26 cd04873 ACT_UUR-ACR-like ACT d 98.1 3.1E-05 6.8E-10 55.0 9.6 68 159-228 2-69 (70)
27 PRK01759 glnD PII uridylyl-tra 98.1 7.3E-05 1.6E-09 78.6 14.6 73 157-231 677-750 (854)
28 KOG0561 bHLH transcription fac 98.1 8.6E-06 1.9E-10 75.2 6.5 54 73-126 60-115 (373)
29 TIGR01693 UTase_glnD [Protein- 98.0 5.5E-05 1.2E-09 79.4 12.9 76 156-232 667-743 (850)
30 PRK05007 PII uridylyl-transfer 98.0 0.0001 2.2E-09 77.8 14.6 74 157-232 701-775 (884)
31 PF01842 ACT: ACT domain; Int 97.8 0.00022 4.9E-09 49.9 8.3 63 159-228 2-64 (66)
32 KOG2483 Upstream transcription 97.7 4.5E-05 9.7E-10 68.7 5.5 56 71-126 57-115 (232)
33 PRK00275 glnD PII uridylyl-tra 97.7 0.00018 3.8E-09 76.1 10.4 75 157-231 704-779 (895)
34 KOG2588 Predicted DNA-binding 97.7 1.3E-05 2.8E-10 83.3 1.8 55 72-126 275-330 (953)
35 PF13740 ACT_6: ACT domain; PD 97.6 0.0011 2.5E-08 49.0 10.7 66 158-231 3-68 (76)
36 PRK03381 PII uridylyl-transfer 97.5 0.00046 9.9E-09 72.0 10.3 70 157-231 599-668 (774)
37 PRK05092 PII uridylyl-transfer 97.5 0.00083 1.8E-08 71.3 11.9 74 157-231 732-806 (931)
38 KOG3960 Myogenic helix-loop-he 97.5 0.0003 6.6E-09 63.6 7.0 68 59-130 107-177 (284)
39 PRK03059 PII uridylyl-transfer 97.5 0.00063 1.4E-08 71.7 10.3 73 157-231 678-751 (856)
40 KOG4029 Transcription factor H 97.4 0.00016 3.5E-09 64.7 4.3 60 71-130 107-170 (228)
41 PLN03217 transcription factor 97.3 0.00046 1E-08 52.7 5.1 46 86-131 20-71 (93)
42 cd04893 ACT_GcvR_1 ACT domains 97.3 0.0036 7.7E-08 46.5 9.6 67 158-232 2-68 (77)
43 PRK04374 PII uridylyl-transfer 97.2 0.0021 4.5E-08 68.0 10.2 72 157-232 690-762 (869)
44 PRK00194 hypothetical protein; 97.0 0.0068 1.5E-07 45.9 8.7 71 157-233 3-73 (90)
45 PF13291 ACT_4: ACT domain; PD 96.9 0.0065 1.4E-07 44.9 8.2 49 155-203 4-54 (80)
46 cd04872 ACT_1ZPV ACT domain pr 96.9 0.0061 1.3E-07 46.1 8.1 70 158-233 2-71 (88)
47 cd04870 ACT_PSP_1 CT domains f 96.8 0.012 2.7E-07 43.1 8.8 65 160-231 2-66 (75)
48 cd04869 ACT_GcvR_2 ACT domains 96.7 0.023 4.9E-07 41.8 9.5 66 160-232 2-73 (81)
49 cd04894 ACT_ACR-like_1 ACT dom 96.7 0.0099 2.1E-07 43.2 7.0 65 159-227 2-66 (69)
50 COG2844 GlnD UTP:GlnB (protein 96.5 0.019 4.1E-07 59.9 10.6 75 159-235 686-761 (867)
51 cd04875 ACT_F4HF-DF N-terminal 96.5 0.048 1E-06 39.7 9.9 68 160-231 2-69 (74)
52 cd04887 ACT_MalLac-Enz ACT_Mal 95.9 0.076 1.6E-06 38.1 8.5 44 160-203 2-46 (74)
53 cd04886 ACT_ThrD-II-like C-ter 95.9 0.089 1.9E-06 36.7 8.6 33 161-193 2-34 (73)
54 PRK06027 purU formyltetrahydro 95.8 0.14 3E-06 47.5 11.8 92 157-258 6-99 (286)
55 KOG3910 Helix loop helix trans 95.7 0.01 2.3E-07 58.4 4.0 60 68-127 521-584 (632)
56 cd04888 ACT_PheB-BS C-terminal 95.5 0.098 2.1E-06 37.6 7.7 46 158-203 1-47 (76)
57 PRK13010 purU formyltetrahydro 95.4 0.14 2.9E-06 47.7 10.2 94 158-260 10-105 (289)
58 TIGR00655 PurU formyltetrahydr 95.0 0.32 7E-06 45.0 11.3 90 160-259 3-95 (280)
59 cd04876 ACT_RelA-SpoT ACT dom 94.6 0.35 7.6E-06 32.3 8.0 34 161-194 2-35 (71)
60 cd04880 ACT_AAAH-PDT-like ACT 94.3 0.5 1.1E-05 34.2 8.7 42 162-203 4-46 (75)
61 PRK13011 formyltetrahydrofolat 94.3 0.48 1E-05 44.0 10.5 92 157-258 7-99 (286)
62 cd04905 ACT_CM-PDT C-terminal 94.2 0.68 1.5E-05 34.1 9.3 46 160-205 4-50 (80)
63 cd04881 ACT_HSDH-Hom ACT_HSDH_ 94.1 0.4 8.7E-06 33.8 7.8 35 159-193 2-36 (79)
64 cd04878 ACT_AHAS N-terminal AC 94.1 0.59 1.3E-05 32.3 8.4 44 160-203 3-48 (72)
65 cd04877 ACT_TyrR N-terminal AC 94.0 0.23 5E-06 36.1 6.4 35 159-193 2-36 (74)
66 cd02116 ACT ACT domains are co 93.9 0.42 9.2E-06 30.1 6.9 35 160-194 1-35 (60)
67 COG0788 PurU Formyltetrahydrof 93.7 0.35 7.5E-06 44.7 8.2 91 158-256 8-98 (287)
68 cd04879 ACT_3PGDH-like ACT_3PG 93.5 0.31 6.8E-06 33.5 6.1 44 160-203 2-47 (71)
69 KOG4447 Transcription factor T 93.4 0.043 9.3E-07 46.5 1.7 53 73-125 78-132 (173)
70 PRK11589 gcvR glycine cleavage 93.4 0.3 6.5E-06 42.8 7.0 66 156-229 7-72 (190)
71 cd04874 ACT_Af1403 N-terminal 93.4 0.49 1.1E-05 32.9 7.0 35 159-193 2-36 (72)
72 KOG3560 Aryl-hydrocarbon recep 93.3 0.04 8.7E-07 55.0 1.6 40 80-119 32-75 (712)
73 cd04889 ACT_PDH-BS-like C-term 93.3 0.41 8.8E-06 32.6 6.2 43 161-203 2-45 (56)
74 PRK04435 hypothetical protein; 92.7 0.96 2.1E-05 37.9 8.8 48 156-203 68-116 (147)
75 cd04908 ACT_Bt0572_1 N-termina 92.5 0.65 1.4E-05 32.9 6.6 43 159-203 3-45 (66)
76 cd04884 ACT_CBS C-terminal ACT 92.4 0.76 1.6E-05 33.0 7.0 34 160-193 2-35 (72)
77 PRK11589 gcvR glycine cleavage 92.4 4.4 9.5E-05 35.5 12.9 74 157-233 95-170 (190)
78 PRK00227 glnD PII uridylyl-tra 92.3 0.19 4.1E-06 52.1 4.9 43 158-204 632-674 (693)
79 cd04903 ACT_LSD C-terminal ACT 92.1 0.72 1.6E-05 31.8 6.4 44 160-203 2-47 (71)
80 cd04882 ACT_Bt0572_2 C-termina 92.0 1.2 2.6E-05 30.6 7.4 34 160-193 2-35 (65)
81 PRK07334 threonine dehydratase 92.0 1.1 2.5E-05 43.1 9.6 39 155-193 324-362 (403)
82 cd04909 ACT_PDH-BS C-terminal 91.8 1.9 4.2E-05 30.3 8.5 34 160-193 4-37 (69)
83 PRK08577 hypothetical protein; 91.8 1.6 3.5E-05 35.7 9.1 39 156-194 55-93 (136)
84 cd04931 ACT_PAH ACT domain of 91.8 1.5 3.3E-05 33.8 8.3 47 158-204 15-62 (90)
85 cd04883 ACT_AcuB C-terminal AC 91.7 1.9 4.2E-05 30.4 8.3 45 159-203 3-49 (72)
86 cd04904 ACT_AAAH ACT domain of 90.7 1.5 3.3E-05 32.0 7.1 46 162-208 5-51 (74)
87 PRK00227 glnD PII uridylyl-tra 90.5 1.3 2.8E-05 46.1 8.8 65 160-230 549-614 (693)
88 COG3830 ACT domain-containing 89.6 0.79 1.7E-05 35.6 4.9 68 157-230 3-70 (90)
89 KOG3558 Hypoxia-inducible fact 89.1 0.29 6.3E-06 50.3 2.8 43 80-122 53-99 (768)
90 TIGR00119 acolac_sm acetolacta 89.0 2.8 6.1E-05 35.6 8.3 63 160-230 4-68 (157)
91 KOG3559 Transcriptional regula 88.2 0.48 1E-05 46.1 3.5 43 80-122 8-54 (598)
92 PRK11895 ilvH acetolactate syn 88.1 3.7 8E-05 35.1 8.6 64 159-230 4-69 (161)
93 CHL00100 ilvH acetohydroxyacid 88.0 4.4 9.6E-05 35.1 9.0 67 159-233 4-72 (174)
94 cd04885 ACT_ThrD-I Tandem C-te 87.7 3.7 8E-05 29.3 7.2 60 161-227 2-61 (68)
95 cd04929 ACT_TPH ACT domain of 87.0 4.1 8.9E-05 30.1 7.2 45 162-207 5-50 (74)
96 cd04902 ACT_3PGDH-xct C-termin 86.6 2.6 5.5E-05 29.6 5.8 43 161-203 3-47 (73)
97 cd04901 ACT_3PGDH C-terminal A 86.5 0.81 1.8E-05 32.0 3.1 43 161-203 3-45 (69)
98 KOG3898 Transcription factor N 86.2 0.94 2E-05 41.5 4.1 52 73-124 72-126 (254)
99 KOG4395 Transcription factor A 84.8 1.8 3.9E-05 39.7 5.1 54 73-126 174-230 (285)
100 PRK10872 relA (p)ppGpp synthet 84.2 5.7 0.00012 41.7 9.2 49 155-203 664-714 (743)
101 PRK06737 acetolactate synthase 84.1 6.6 0.00014 29.5 7.1 34 159-192 4-37 (76)
102 cd04898 ACT_ACR-like_4 ACT dom 82.1 3.3 7.3E-05 31.2 4.8 44 160-203 3-48 (77)
103 PF13710 ACT_5: ACT domain; PD 81.8 6.8 0.00015 27.9 6.2 56 166-229 1-58 (63)
104 COG4492 PheB ACT domain-contai 81.7 9 0.00019 32.1 7.6 67 156-228 71-138 (150)
105 PRK11092 bifunctional (p)ppGpp 81.2 8.5 0.00019 40.2 9.1 43 155-197 624-666 (702)
106 cd04930 ACT_TH ACT domain of t 81.0 10 0.00022 30.5 7.7 45 159-203 43-88 (115)
107 PRK11899 prephenate dehydratas 79.5 13 0.00029 34.4 8.9 48 158-205 195-243 (279)
108 PRK13562 acetolactate synthase 78.4 11 0.00025 28.8 6.8 64 160-230 5-70 (84)
109 TIGR00691 spoT_relA (p)ppGpp s 78.3 12 0.00026 39.0 9.0 40 155-194 608-647 (683)
110 PRK06382 threonine dehydratase 76.4 19 0.0004 34.8 9.4 36 156-191 329-364 (406)
111 PRK11152 ilvM acetolactate syn 76.0 17 0.00036 27.2 7.0 62 159-229 5-68 (76)
112 cd04906 ACT_ThrD-I_1 First of 74.1 33 0.00072 25.5 8.4 30 160-191 4-33 (85)
113 PF05088 Bac_GDH: Bacterial NA 72.3 66 0.0014 36.8 13.3 73 156-229 488-565 (1528)
114 COG0317 SpoT Guanosine polypho 70.7 21 0.00046 37.3 8.6 50 154-203 624-673 (701)
115 TIGR01127 ilvA_1Cterm threonin 70.2 38 0.00081 32.2 9.7 36 156-191 304-339 (380)
116 PRK08178 acetolactate synthase 69.7 22 0.00047 28.0 6.5 64 158-230 9-74 (96)
117 COG0077 PheA Prephenate dehydr 68.3 35 0.00076 31.8 8.7 65 157-228 194-259 (279)
118 cd04937 ACT_AKi-DapG-BS_2 ACT 65.7 42 0.00092 23.3 8.5 31 160-192 4-37 (64)
119 PRK08198 threonine dehydratase 65.6 53 0.0012 31.5 9.8 36 156-191 326-361 (404)
120 cd04922 ACT_AKi-HSDH-ThrA_2 AC 64.6 41 0.0009 22.8 8.4 33 160-192 4-39 (66)
121 PRK10820 DNA-binding transcrip 64.3 9.8 0.00021 38.1 4.6 36 159-194 2-37 (520)
122 PF13840 ACT_7: ACT domain ; P 63.0 50 0.0011 23.3 7.0 33 157-189 6-42 (65)
123 PRK10622 pheA bifunctional cho 59.3 63 0.0014 31.3 9.0 44 162-205 302-346 (386)
124 cd04892 ACT_AK-like_2 ACT doma 58.8 49 0.0011 21.7 8.3 33 160-192 3-38 (65)
125 cd04919 ACT_AK-Hom3_2 ACT doma 58.6 56 0.0012 22.3 7.3 29 166-194 13-41 (66)
126 cd04918 ACT_AK1-AT_2 ACT domai 55.8 68 0.0015 22.4 7.2 32 166-197 12-43 (65)
127 PLN02317 arogenate dehydratase 55.4 87 0.0019 30.5 9.2 47 160-207 286-347 (382)
128 PRK11898 prephenate dehydratas 53.6 74 0.0016 29.4 8.2 44 160-203 199-244 (283)
129 COG4747 ACT domain-containing 49.0 40 0.00086 27.8 4.9 38 159-196 5-42 (142)
130 cd04915 ACT_AK-Ectoine_2 ACT d 49.0 92 0.002 21.9 6.7 28 167-194 14-41 (66)
131 COG2716 GcvR Glycine cleavage 48.3 21 0.00045 31.0 3.3 64 157-228 5-68 (176)
132 COG2716 GcvR Glycine cleavage 47.6 27 0.00058 30.4 3.9 73 155-230 90-164 (176)
133 cd04913 ACT_AKii-LysC-BS-like_ 47.1 89 0.0019 21.2 8.7 26 164-189 9-34 (75)
134 TIGR01270 Trp_5_monoox tryptop 46.4 75 0.0016 31.8 7.3 50 157-207 31-82 (464)
135 KOG3582 Mlx interactors and re 45.2 5 0.00011 41.6 -1.0 59 73-131 651-714 (856)
136 PRK08526 threonine dehydratase 43.2 1.1E+02 0.0023 29.8 7.7 39 156-194 325-363 (403)
137 TIGR01268 Phe4hydrox_tetr phen 43.0 1.1E+02 0.0023 30.5 7.7 48 159-207 18-66 (436)
138 cd04916 ACT_AKiii-YclM-BS_2 AC 42.3 1E+02 0.0023 20.7 8.4 33 160-192 4-39 (66)
139 COG3283 TyrR Transcriptional r 42.3 37 0.00079 33.4 4.3 36 159-194 2-37 (511)
140 PF02344 Myc-LZ: Myc leucine z 39.0 34 0.00074 21.5 2.3 20 78-97 10-29 (32)
141 cd04932 ACT_AKiii-LysC-EC_1 AC 38.2 1.6E+02 0.0034 21.5 8.5 26 164-189 11-36 (75)
142 PRK12483 threonine dehydratase 36.7 2E+02 0.0044 29.0 8.8 50 156-207 344-393 (521)
143 PRK14633 hypothetical protein; 36.6 2.3E+02 0.005 23.7 7.9 54 173-231 9-62 (150)
144 PRK11790 D-3-phosphoglycerate 36.5 80 0.0017 30.7 5.8 45 159-203 340-384 (409)
145 KOG4447 Transcription factor T 36.3 33 0.00072 29.3 2.7 23 80-102 29-51 (173)
146 TIGR02079 THD1 threonine dehyd 36.0 2.9E+02 0.0063 26.7 9.6 36 156-191 324-359 (409)
147 COG4747 ACT domain-containing 34.3 2.5E+02 0.0054 23.2 7.3 28 161-188 73-100 (142)
148 PRK08639 threonine dehydratase 33.9 3.1E+02 0.0066 26.6 9.4 66 156-227 335-401 (420)
149 COG3978 Acetolactate synthase 32.8 2.3E+02 0.0049 21.8 7.0 64 158-230 4-69 (86)
150 PF14689 SPOB_a: Sensor_kinase 32.1 76 0.0017 22.4 3.7 47 76-129 11-57 (62)
151 TIGR01124 ilvA_2Cterm threonin 30.3 2.8E+02 0.006 27.8 8.6 64 156-227 324-387 (499)
152 cd04924 ACT_AK-Arch_2 ACT doma 29.7 1.7E+02 0.0038 19.5 8.5 27 166-192 13-39 (66)
153 cd04890 ACT_AK-like_1 ACT doma 29.3 1.7E+02 0.0037 19.7 5.1 24 166-189 12-35 (62)
154 PRK08818 prephenate dehydrogen 29.2 1.3E+02 0.0029 28.9 5.9 40 163-203 301-341 (370)
155 cd04868 ACT_AK-like ACT domain 29.0 1.5E+02 0.0033 18.6 7.2 26 166-191 12-37 (60)
156 PRK14632 hypothetical protein; 28.8 2.8E+02 0.006 23.8 7.2 54 174-232 14-67 (172)
157 cd04912 ACT_AKiii-LysC-EC-like 27.9 1.2E+02 0.0027 21.7 4.3 31 159-189 3-36 (75)
158 COG1707 ACT domain-containing 27.8 2.6E+02 0.0056 24.6 6.7 45 159-203 4-48 (218)
159 PRK09224 threonine dehydratase 27.6 4.1E+02 0.0088 26.6 9.2 65 156-227 327-391 (504)
160 PF05088 Bac_GDH: Bacterial NA 27.4 4.9E+02 0.011 30.1 10.5 33 157-189 17-49 (1528)
161 cd04936 ACT_AKii-LysC-BS-like_ 27.2 1.9E+02 0.004 19.0 6.8 24 166-189 12-35 (63)
162 KOG3582 Mlx interactors and re 26.7 17 0.00036 38.0 -0.7 52 75-129 789-845 (856)
163 cd04923 ACT_AK-LysC-DapG-like_ 25.8 2E+02 0.0043 18.8 7.9 24 166-189 12-35 (63)
164 COG3414 SgaB Phosphotransferas 25.8 3.1E+02 0.0068 21.1 6.6 72 159-230 3-92 (93)
165 PRK14623 hypothetical protein; 24.6 1.8E+02 0.0039 23.1 5.0 45 111-167 3-47 (106)
166 PRK06349 homoserine dehydrogen 23.1 2.4E+02 0.0053 27.4 6.6 34 158-191 349-382 (426)
167 cd04921 ACT_AKi-HSDH-ThrA-like 22.9 2.8E+02 0.006 19.5 8.3 29 166-194 13-41 (80)
168 cd04891 ACT_AK-LysC-DapG-like_ 22.3 2.2E+02 0.0048 18.2 6.6 26 165-190 9-34 (61)
169 PRK14646 hypothetical protein; 21.8 4.9E+02 0.011 21.9 8.2 58 171-231 10-68 (155)
170 cd04910 ACT_AK-Ectoine_1 ACT d 21.4 3.4E+02 0.0073 19.9 7.5 31 167-199 14-44 (71)
171 cd04914 ACT_AKi-DapG-BS_1 ACT 21.2 1.7E+02 0.0038 20.6 3.9 33 159-191 3-36 (67)
172 PLN02550 threonine dehydratase 21.1 5.4E+02 0.012 26.6 8.8 64 156-227 416-479 (591)
173 cd04935 ACT_AKiii-DAPDC_1 ACT 21.0 97 0.0021 22.6 2.6 25 165-189 12-36 (75)
174 PRK14626 hypothetical protein; 20.9 2.4E+02 0.0052 22.5 5.0 23 111-133 7-29 (110)
175 KOG2663 Acetolactate synthase, 20.6 2.1E+02 0.0046 26.6 5.2 63 160-230 80-144 (309)
176 cd04911 ACT_AKiii-YclM-BS_1 AC 20.5 2.9E+02 0.0063 20.6 5.1 24 166-189 13-36 (76)
177 TIGR00656 asp_kin_monofn aspar 20.4 3.7E+02 0.0081 25.6 7.2 34 160-195 340-376 (401)
178 PRK14637 hypothetical protein; 20.1 5.3E+02 0.011 21.6 7.6 60 167-231 7-67 (151)
No 1
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and
Probab=99.43 E-value=2.3e-13 Score=96.17 Aligned_cols=54 Identities=39% Similarity=0.559 Sum_probs=50.2
Q ss_pred HhhhccHHHHHHHHHHHHhHHHHHccCCCC---CCCChhhHHHHHHHHHHHHHHHHH
Q 024670 73 ALKNHSEAERRRRERINAHLDTLRGLVPPN---GKMDKATLLAEVIRQVKELKTNAI 126 (264)
Q Consensus 73 ~~~~h~~~ER~RR~~in~~~~~Lr~lvP~~---~k~dkasiL~~ai~yik~Lq~~~~ 126 (264)
....|+..||+||++||+.|..|+.+||.. .|+||++||..||+||+.|+.+++
T Consensus 4 ~r~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~~~~ 60 (60)
T cd00083 4 RREAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELLQ 60 (60)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 347899999999999999999999999987 899999999999999999998763
No 2
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.42 E-value=1.6e-12 Score=97.53 Aligned_cols=72 Identities=18% Similarity=0.277 Sum_probs=62.7
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeeeEEEEEecCCeEEEEEEEeecCCCCchhhhhhHHHHHHHHHHHHHh
Q 024670 159 KASICCEYRPELMSDLRQALDALPLKMLKAEISTLGGRLKNVIVFTSCKEGNAEASQTLANDVQQALNSVLEK 231 (264)
Q Consensus 159 ~vev~c~~r~glL~~Il~aLe~lgL~V~~A~Ist~g~r~~~vF~v~~~~~~~~~~~~~~~~~l~qAL~~vl~~ 231 (264)
.|+|.|+||||||++|..+|.++|+.|.+|+|+|.|+++.++|||....+.. ...+...+.|+++|..++.+
T Consensus 3 vveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~k-l~~~~~~~~l~~~L~~al~~ 74 (75)
T cd04897 3 VVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRT-LSTEGERQRVIKCLEAAIER 74 (75)
T ss_pred EEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCCCc-cCCHHHHHHHHHHHHHHHhc
Confidence 5799999999999999999999999999999999999999999996655544 34455678999999998864
No 3
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt).; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....
Probab=99.40 E-value=3.8e-13 Score=94.36 Aligned_cols=49 Identities=45% Similarity=0.738 Sum_probs=46.1
Q ss_pred hhhccHHHHHHHHHHHHhHHHHHccCCCC-----CCCChhhHHHHHHHHHHHHH
Q 024670 74 LKNHSEAERRRRERINAHLDTLRGLVPPN-----GKMDKATLLAEVIRQVKELK 122 (264)
Q Consensus 74 ~~~h~~~ER~RR~~in~~~~~Lr~lvP~~-----~k~dkasiL~~ai~yik~Lq 122 (264)
+..|+..||+||++||+.|.+|+.+||.. .|++|++||..||+||++||
T Consensus 2 R~~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq 55 (55)
T PF00010_consen 2 RQKHNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ 55 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence 36799999999999999999999999976 78999999999999999997
No 4
>smart00353 HLH helix loop helix domain.
Probab=99.39 E-value=7.1e-13 Score=91.83 Aligned_cols=49 Identities=41% Similarity=0.630 Sum_probs=45.6
Q ss_pred cHHHHHHHHHHHHhHHHHHccCCC---CCCCChhhHHHHHHHHHHHHHHHHH
Q 024670 78 SEAERRRRERINAHLDTLRGLVPP---NGKMDKATLLAEVIRQVKELKTNAI 126 (264)
Q Consensus 78 ~~~ER~RR~~in~~~~~Lr~lvP~---~~k~dkasiL~~ai~yik~Lq~~~~ 126 (264)
+..||+||++||+.|..|+++||. ..|++|++||.+||+||++|+.+++
T Consensus 1 n~~Er~RR~~~n~~~~~L~~lip~~~~~~k~~k~~iL~~ai~yi~~L~~~~~ 52 (53)
T smart00353 1 NARERRRRRKINEAFDELRSLLPTLPNNKKLSKAEILRLAIEYIKSLQEELQ 52 (53)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 468999999999999999999994 6789999999999999999999876
No 5
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.35 E-value=6.9e-12 Score=94.04 Aligned_cols=71 Identities=11% Similarity=0.107 Sum_probs=62.2
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeeeEEEEE--ecCCeEEEEEEEeecCCCCchhhhhhHHHHHHHHHHHHHh
Q 024670 159 KASICCEYRPELMSDLRQALDALPLKMLKAEIS--TLGGRLKNVIVFTSCKEGNAEASQTLANDVQQALNSVLEK 231 (264)
Q Consensus 159 ~vev~c~~r~glL~~Il~aLe~lgL~V~~A~Is--t~g~r~~~vF~v~~~~~~~~~~~~~~~~~l~qAL~~vl~~ 231 (264)
.++|.|.||||||++|.++|..+||+|..|+|+ |.|+++.|+||+ ++.+.. ..++...+.|+++|.++++.
T Consensus 2 vlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv-~~~g~k-l~d~~~~~~L~~~L~~~l~~ 74 (75)
T cd04896 2 LLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIV-QSDGKK-IMDPKKQAALCARLREEMVC 74 (75)
T ss_pred EEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEE-eCCCCc-cCCHHHHHHHHHHHHHHhcC
Confidence 478999999999999999999999999999999 999999999999 666555 33455678999999998863
No 6
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.33 E-value=1e-11 Score=92.39 Aligned_cols=68 Identities=22% Similarity=0.267 Sum_probs=56.7
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeeeEEEEEecCCeEEEEEEEeecCCCCchhhhhhHHHHHHHHH
Q 024670 158 YKASICCEYRPELMSDLRQALDALPLKMLKAEISTLGGRLKNVIVFTSCKEGNAEASQTLANDVQQALN 226 (264)
Q Consensus 158 V~vev~c~~r~glL~~Il~aLe~lgL~V~~A~Ist~g~r~~~vF~v~~~~~~~~~~~~~~~~~l~qAL~ 226 (264)
..|+|.++||||||++|.++|.++||+|..|+|+|.|+++.|+|||....+.. ..++...+.|+++|.
T Consensus 2 Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~k-l~d~~~~~~l~~~L~ 69 (72)
T cd04895 2 TLVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNK-LTDDSLIAYIEKSLG 69 (72)
T ss_pred EEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCCC-CCCHHHHHHHHHHhc
Confidence 35799999999999999999999999999999999999999999996554433 334455677777764
No 7
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=99.22 E-value=7.6e-11 Score=112.73 Aligned_cols=62 Identities=34% Similarity=0.454 Sum_probs=54.1
Q ss_pred hHHhHHHhhhccHHHHHHHHHHHHhHHHHHccCCCC----CCCChhhHHHHHHHHHHHHHHHHHHH
Q 024670 67 EAKAMVALKNHSEAERRRRERINAHLDTLRGLVPPN----GKMDKATLLAEVIRQVKELKTNAIEA 128 (264)
Q Consensus 67 ~~~~~~~~~~h~~~ER~RR~~in~~~~~Lr~lvP~~----~k~dkasiL~~ai~yik~Lq~~~~~l 128 (264)
..+.+.++.+|++.|||||++||++|.+|..|||.+ .|..|.+||..+++||++||+..++.
T Consensus 227 ~~rdr~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q~~ 292 (411)
T KOG1318|consen 227 LERDRRKRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQRA 292 (411)
T ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHHHH
Confidence 344555779999999999999999999999999977 46789999999999999999876643
No 8
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.09 E-value=1e-09 Score=82.04 Aligned_cols=70 Identities=23% Similarity=0.361 Sum_probs=57.5
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeeeEEEEEe-cCCeEEEEEEEeecCCCCchhhhhhHHHHHHHHHHHHH
Q 024670 159 KASICCEYRPELMSDLRQALDALPLKMLKAEIST-LGGRLKNVIVFTSCKEGNAEASQTLANDVQQALNSVLE 230 (264)
Q Consensus 159 ~vev~c~~r~glL~~Il~aLe~lgL~V~~A~Ist-~g~r~~~vF~v~~~~~~~~~~~~~~~~~l~qAL~~vl~ 230 (264)
.+++.|++|||+|++|..+|..+|+.|+.|+|.| .+|++.++|+|....+. ...+...+.|+++|.+++.
T Consensus 2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~~~~--~~~~~~~~~l~~~L~~~L~ 72 (76)
T cd04927 2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDAREL--LHTKKRREETYDYLRAVLG 72 (76)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCCCCC--CCCHHHHHHHHHHHHHHHc
Confidence 4789999999999999999999999999999996 99999999999654333 2233445678888887763
No 9
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.04 E-value=2.3e-09 Score=79.05 Aligned_cols=70 Identities=24% Similarity=0.282 Sum_probs=55.4
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeeeEEEEEec-CCeEEEEEEEeecCCCCchhhhhhHHHHHHHHHHH
Q 024670 158 YKASICCEYRPELMSDLRQALDALPLKMLKAEISTL-GGRLKNVIVFTSCKEGNAEASQTLANDVQQALNSV 228 (264)
Q Consensus 158 V~vev~c~~r~glL~~Il~aLe~lgL~V~~A~Ist~-g~r~~~vF~v~~~~~~~~~~~~~~~~~l~qAL~~v 228 (264)
..|.|.|++|||+|++|..+|..+||+|+.|+|.|. +|++.++|++....+. ....+...+.|+++|.++
T Consensus 2 ~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~~~~-~~~~~~~~~~l~~~L~~~ 72 (73)
T cd04900 2 TEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDGE-PIGERERLARIREALEDA 72 (73)
T ss_pred EEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECCCCC-CCChHHHHHHHHHHHHhh
Confidence 357899999999999999999999999999999877 7999999999653333 222334456677777664
No 10
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.98 E-value=6.3e-09 Score=77.18 Aligned_cols=72 Identities=24% Similarity=0.307 Sum_probs=59.1
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeeeEEEEEecCCeEEEEEEEeecCCCCchhhhhhHHHHHHHHHHHHH
Q 024670 159 KASICCEYRPELMSDLRQALDALPLKMLKAEISTLGGRLKNVIVFTSCKEGNAEASQTLANDVQQALNSVLE 230 (264)
Q Consensus 159 ~vev~c~~r~glL~~Il~aLe~lgL~V~~A~Ist~g~r~~~vF~v~~~~~~~~~~~~~~~~~l~qAL~~vl~ 230 (264)
.+++.++||||+|++|..+|..+|+.|+.|+|.|.++++.++|+|....++.....+...+.|+++|.+++.
T Consensus 2 ~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d~~~~~~~~~~~~~~~i~~~L~~~l~ 73 (74)
T cd04925 2 AIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDEETGAPIDDPIRLASIEDRLDNVLR 73 (74)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEcCcCCCCCCCHHHHHHHHHHHHHHhc
Confidence 478999999999999999999999999999999999999999999654312222233456788888888763
No 11
>PRK05007 PII uridylyl-transferase; Provisional
Probab=98.74 E-value=5.8e-08 Score=101.90 Aligned_cols=74 Identities=18% Similarity=0.330 Sum_probs=63.7
Q ss_pred eeEEEEEEcCCCCChHHHHHHHHHhCCCeeeEEEEEecCCeEEEEEEEeecCCCCchhhhhhHHHHHHHHHHHHHh
Q 024670 156 FLYKASICCEYRPELMSDLRQALDALPLKMLKAEISTLGGRLKNVIVFTSCKEGNAEASQTLANDVQQALNSVLEK 231 (264)
Q Consensus 156 ~~V~vev~c~~r~glL~~Il~aLe~lgL~V~~A~Ist~g~r~~~vF~v~~~~~~~~~~~~~~~~~l~qAL~~vl~~ 231 (264)
....|+|.|.||||||++|.++|.++||+|..|+|+|.|+++.|+|||....+. ..+ ....+.|+++|..++..
T Consensus 807 ~~TvlEV~a~DRpGLL~~I~~~l~~~~l~I~~AkI~T~gera~DvFyV~~~~g~-~l~-~~~~~~l~~~L~~~l~~ 880 (884)
T PRK05007 807 RRSYMELIALDQPGLLARVGKIFADLGISLHGARITTIGERVEDLFILATADRR-ALN-EELQQELRQRLTEALNP 880 (884)
T ss_pred CeEEEEEEeCCchHHHHHHHHHHHHCCcEEEEEEEeccCceEEEEEEEEcCCCC-cCC-HHHHHHHHHHHHHHHhh
Confidence 567789999999999999999999999999999999999999999999655443 333 44568999999998864
No 12
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=98.70 E-value=1.8e-07 Score=97.88 Aligned_cols=72 Identities=19% Similarity=0.297 Sum_probs=61.0
Q ss_pred eeEEEEEEcCCCCChHHHHHHHHHhCCCeeeEEEEEecCCeEEEEEEEeecCCCCchhhhhhHHHHHHHHHHHH
Q 024670 156 FLYKASICCEYRPELMSDLRQALDALPLKMLKAEISTLGGRLKNVIVFTSCKEGNAEASQTLANDVQQALNSVL 229 (264)
Q Consensus 156 ~~V~vev~c~~r~glL~~Il~aLe~lgL~V~~A~Ist~g~r~~~vF~v~~~~~~~~~~~~~~~~~l~qAL~~vl 229 (264)
....|+|.+.||||||++|.++|.++|++|..|+|+|.|+++.|+|||++..+... ..... +.|+++|..++
T Consensus 782 ~~T~iev~a~DrpGLL~~I~~~l~~~~l~i~~AkI~T~gerv~D~Fyv~~~~g~~l-~~~~~-~~l~~~L~~~l 853 (854)
T PRK01759 782 EQTEMELFALDRAGLLAQVSQVFSELNLNLLNAKITTIGEKAEDFFILTNQQGQAL-DEEER-KALKSRLLSNL 853 (854)
T ss_pred CeEEEEEEeCCchHHHHHHHHHHHHCCCEEEEEEEcccCceEEEEEEEECCCCCcC-ChHHH-HHHHHHHHHHh
Confidence 56778999999999999999999999999999999999999999999976544432 23333 88888888765
No 13
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.62 E-value=3.4e-07 Score=67.43 Aligned_cols=64 Identities=25% Similarity=0.365 Sum_probs=52.7
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeeeEEEEE-ecCCeEEEEEEEeecCCCCchhhhhhHHHHHHHHHHHH
Q 024670 159 KASICCEYRPELMSDLRQALDALPLKMLKAEIS-TLGGRLKNVIVFTSCKEGNAEASQTLANDVQQALNSVL 229 (264)
Q Consensus 159 ~vev~c~~r~glL~~Il~aLe~lgL~V~~A~Is-t~g~r~~~vF~v~~~~~~~~~~~~~~~~~l~qAL~~vl 229 (264)
.|-|.|+++||+|.+|..+|..+||.|+.|+|. +.+|.+.++|+|....++. ...+.++|++++
T Consensus 3 eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~~~~~-------~~~~~~~~~~~~ 67 (68)
T cd04928 3 EITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGWKRGE-------TAALGHALQKEI 67 (68)
T ss_pred EEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecCCccc-------hHHHHHHHHHhh
Confidence 356799999999999999999999999999986 6699999999996554432 356777777665
No 14
>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription]
Probab=98.56 E-value=6.3e-08 Score=87.98 Aligned_cols=55 Identities=29% Similarity=0.508 Sum_probs=48.7
Q ss_pred HHhhhccHHHHHHHHHHHHhHHHHHccCCCC--------CCCChhhHHHHHHHHHHHHHHHHH
Q 024670 72 VALKNHSEAERRRRERINAHLDTLRGLVPPN--------GKMDKATLLAEVIRQVKELKTNAI 126 (264)
Q Consensus 72 ~~~~~h~~~ER~RR~~in~~~~~Lr~lvP~~--------~k~dkasiL~~ai~yik~Lq~~~~ 126 (264)
.+..+|-+.||+||+|||+.|.+|+.|||-. .|++||-||+-||+|+++||...+
T Consensus 31 ~rk~~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~~ 93 (250)
T KOG4304|consen 31 YRKVRKPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQQ 93 (250)
T ss_pred HhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhcccc
Confidence 3457899999999999999999999999932 788999999999999999998543
No 15
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.52 E-value=1.1e-06 Score=63.21 Aligned_cols=68 Identities=25% Similarity=0.353 Sum_probs=55.6
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeeeEEEEEecCCeEEEEEEEeecCCCCchhhhhhHHHHHHHHHHH
Q 024670 159 KASICCEYRPELMSDLRQALDALPLKMLKAEISTLGGRLKNVIVFTSCKEGNAEASQTLANDVQQALNSV 228 (264)
Q Consensus 159 ~vev~c~~r~glL~~Il~aLe~lgL~V~~A~Ist~g~r~~~vF~v~~~~~~~~~~~~~~~~~l~qAL~~v 228 (264)
.+.+.+++++|+|.+|+++|.++++.|.++++.+.++.+.++|++....+.. . .....+.|+++|..+
T Consensus 2 ~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~~~~~~-~-~~~~~~~i~~~l~~~ 69 (70)
T cd04899 2 VLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDADGQP-L-DPERQEALRAALGEA 69 (70)
T ss_pred EEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEECCCCCc-C-CHHHHHHHHHHHHhh
Confidence 4678999999999999999999999999999999999999999996544333 2 233556788887665
No 16
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]
Probab=98.52 E-value=9.1e-08 Score=82.69 Aligned_cols=56 Identities=30% Similarity=0.487 Sum_probs=49.0
Q ss_pred hhhccHHHHHHHHHHHHhHHHHHccCCCC-------CCCChhhHHHHHHHHHHHHHHHHHHHh
Q 024670 74 LKNHSEAERRRRERINAHLDTLRGLVPPN-------GKMDKATLLAEVIRQVKELKTNAIEAS 129 (264)
Q Consensus 74 ~~~h~~~ER~RR~~in~~~~~Lr~lvP~~-------~k~dkasiL~~ai~yik~Lq~~~~~l~ 129 (264)
+..|.-+||+||+.||..+..|+.|||.+ .|+.||.||..+|+||.+|+.+....+
T Consensus 63 r~aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~kqe 125 (229)
T KOG1319|consen 63 RRAHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKKQE 125 (229)
T ss_pred HHHHHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46799999999999999999999999955 377899999999999999998765433
No 17
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.49 E-value=1.5e-06 Score=63.97 Aligned_cols=67 Identities=25% Similarity=0.290 Sum_probs=52.4
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeeeEEEEEecCCeEEEEEEEeecCCCCchhhhhhHHHHHHHHH
Q 024670 158 YKASICCEYRPELMSDLRQALDALPLKMLKAEISTLGGRLKNVIVFTSCKEGNAEASQTLANDVQQALN 226 (264)
Q Consensus 158 V~vev~c~~r~glL~~Il~aLe~lgL~V~~A~Ist~g~r~~~vF~v~~~~~~~~~~~~~~~~~l~qAL~ 226 (264)
+.+.|.+++++|+|.+|..+|.++++.|++|.+.|.++.+.++|++....+.. . .....+.|+++|.
T Consensus 2 tri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~~~~~~-~-~~~~~~~l~~~l~ 68 (72)
T cd04926 2 VRLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDANGNP-V-DPKTIEAVRQEIG 68 (72)
T ss_pred eEEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEECCCCCc-C-CHHHHHHHHHHhc
Confidence 35678999999999999999999999999999999999999999996543332 2 2223445555554
No 18
>PRK04374 PII uridylyl-transferase; Provisional
Probab=98.49 E-value=9.8e-07 Score=92.61 Aligned_cols=73 Identities=22% Similarity=0.322 Sum_probs=61.9
Q ss_pred eeEEEEEEcCCCCChHHHHHHHHHhCCCeeeEEEEEecCCeEEEEEEEeecCCCCchhhhhhHHHHHHHHHHHHH
Q 024670 156 FLYKASICCEYRPELMSDLRQALDALPLKMLKAEISTLGGRLKNVIVFTSCKEGNAEASQTLANDVQQALNSVLE 230 (264)
Q Consensus 156 ~~V~vev~c~~r~glL~~Il~aLe~lgL~V~~A~Ist~g~r~~~vF~v~~~~~~~~~~~~~~~~~l~qAL~~vl~ 230 (264)
....|+|.+.||||||++|..+|..+|++|+.|+|+|.++++.++|+|....+.. ...... ..|+++|..++.
T Consensus 795 ~~t~leI~a~DrpGLLa~Ia~~l~~~~l~I~~AkI~T~g~~a~D~F~V~d~~g~~-~~~~~~-~~l~~~L~~~l~ 867 (869)
T PRK04374 795 RRTRISLVAPDRPGLLADVAHVLRMQHLRVHDARIATFGERAEDQFQITDEHDRP-LSESAR-QALRDALCACLD 867 (869)
T ss_pred CeEEEEEEeCCcCcHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCCCCc-CChHHH-HHHHHHHHHHhc
Confidence 4667899999999999999999999999999999999999999999997654443 223333 899999998875
No 19
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=98.47 E-value=1.3e-06 Score=92.00 Aligned_cols=75 Identities=23% Similarity=0.345 Sum_probs=63.3
Q ss_pred eeEEEEEEcCCCCChHHHHHHHHHhCCCeeeEEEEEecCCeEEEEEEEeecCCCCchhhhhhHHHHHHHHHHHHHh
Q 024670 156 FLYKASICCEYRPELMSDLRQALDALPLKMLKAEISTLGGRLKNVIVFTSCKEGNAEASQTLANDVQQALNSVLEK 231 (264)
Q Consensus 156 ~~V~vev~c~~r~glL~~Il~aLe~lgL~V~~A~Ist~g~r~~~vF~v~~~~~~~~~~~~~~~~~l~qAL~~vl~~ 231 (264)
....|+|.+.||||||++|..+|..+||+|+.|+|+|.++++.++|+|....+.. .......+.|+++|.+++..
T Consensus 813 ~~T~i~V~a~DrpGLLa~I~~~L~~~~l~I~~AkI~T~g~~v~D~F~V~d~~g~~-l~~~~~~~~l~~~L~~~L~~ 887 (895)
T PRK00275 813 PVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFITDADNQP-LSDPQLCSRLQDAICEQLDA 887 (895)
T ss_pred CeEEEEEEECCCCCHHHHHHHHHHHCCCEEEEeEEEecCCEEEEEEEEECCCCCC-CCCHHHHHHHHHHHHHHHhc
Confidence 3567899999999999999999999999999999999999999999997654443 22334567899999998854
No 20
>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription]
Probab=98.45 E-value=1.7e-07 Score=96.48 Aligned_cols=51 Identities=35% Similarity=0.572 Sum_probs=47.9
Q ss_pred hhhccHHHHHHHHHHHHhHHHHHccCCCC----CCCChhhHHHHHHHHHHHHHHH
Q 024670 74 LKNHSEAERRRRERINAHLDTLRGLVPPN----GKMDKATLLAEVIRQVKELKTN 124 (264)
Q Consensus 74 ~~~h~~~ER~RR~~in~~~~~Lr~lvP~~----~k~dkasiL~~ai~yik~Lq~~ 124 (264)
+.+|+.+|||||+++|..|.+|.+|||.+ .|+||.+||.+||.+||.+++.
T Consensus 21 Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~ 75 (803)
T KOG3561|consen 21 RENRSEIEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQ 75 (803)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhh
Confidence 47899999999999999999999999965 6999999999999999999984
No 21
>PRK05092 PII uridylyl-transferase; Provisional
Probab=98.26 E-value=9.2e-06 Score=85.96 Aligned_cols=75 Identities=25% Similarity=0.300 Sum_probs=63.8
Q ss_pred eeEEEEEEcCCCCChHHHHHHHHHhCCCeeeEEEEEecCCeEEEEEEEeecCCCCchhhhhhHHHHHHHHHHHHHh
Q 024670 156 FLYKASICCEYRPELMSDLRQALDALPLKMLKAEISTLGGRLKNVIVFTSCKEGNAEASQTLANDVQQALNSVLEK 231 (264)
Q Consensus 156 ~~V~vev~c~~r~glL~~Il~aLe~lgL~V~~A~Ist~g~r~~~vF~v~~~~~~~~~~~~~~~~~l~qAL~~vl~~ 231 (264)
..+.|+|.|.||||+|++|.++|..+|++|..|+|.|.++++.++|+|....+... ..+...+.|+++|.+++..
T Consensus 842 ~~t~i~I~~~DrpGLl~~I~~~l~~~gl~I~~A~I~T~~~~~~D~F~v~d~~g~~i-~~~~~~~~l~~~L~~~L~~ 916 (931)
T PRK05092 842 RFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIATYGERAVDVFYVTDLFGLKI-TNEARQAAIRRALLAALAE 916 (931)
T ss_pred CeEEEEEEECCcCcHHHHHHHHHHHCCceEEEEEEEEcCCEEEEEEEEeCCCCCcC-CCHHHHHHHHHHHHHHhcC
Confidence 35678999999999999999999999999999999999999999999976554432 2334468899999999964
No 22
>PRK03059 PII uridylyl-transferase; Provisional
Probab=98.25 E-value=7e-06 Score=86.18 Aligned_cols=71 Identities=21% Similarity=0.342 Sum_probs=59.4
Q ss_pred eeEEEEEEcCCCCChHHHHHHHHHhCCCeeeEEEEEecCCeEEEEEEEeecCCCCchhhhhhHHHHHHHHHHHHH
Q 024670 156 FLYKASICCEYRPELMSDLRQALDALPLKMLKAEISTLGGRLKNVIVFTSCKEGNAEASQTLANDVQQALNSVLE 230 (264)
Q Consensus 156 ~~V~vev~c~~r~glL~~Il~aLe~lgL~V~~A~Ist~g~r~~~vF~v~~~~~~~~~~~~~~~~~l~qAL~~vl~ 230 (264)
....|+|.|.||||||++|..+|..+|++|+.|+|+|.++++.++|+|...+. ......+.|+++|.++++
T Consensus 785 ~~T~i~V~a~DrpGLLa~Ia~~L~~~~l~I~~AkI~T~~~~v~DvF~V~~~~~----~~~~~~~~l~~~L~~~L~ 855 (856)
T PRK03059 785 QYYILSVSANDRPGLLYAIARVLAEHRVSVHTAKINTLGERVEDTFLIDGSGL----SDNRLQIQLETELLDALA 855 (856)
T ss_pred CEEEEEEEeCCcchHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEcCCCC----CCHHHHHHHHHHHHHHhc
Confidence 45678999999999999999999999999999999999999999999943221 133456788888888763
No 23
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=5.6e-06 Score=85.13 Aligned_cols=72 Identities=24% Similarity=0.305 Sum_probs=56.9
Q ss_pred eeEEEEEEcCCCCChHHHHHHHHHhCCCeeeEEEEEecCCeEEEEEEEeecCCCCchhhhhhHHHHHHHHHHHH
Q 024670 156 FLYKASICCEYRPELMSDLRQALDALPLKMLKAEISTLGGRLKNVIVFTSCKEGNAEASQTLANDVQQALNSVL 229 (264)
Q Consensus 156 ~~V~vev~c~~r~glL~~Il~aLe~lgL~V~~A~Ist~g~r~~~vF~v~~~~~~~~~~~~~~~~~l~qAL~~vl 229 (264)
....+|+.+.||||||+.|..+|.+++|+|++|+|+|+|+++.|+|+|....+... .......+.++|...+
T Consensus 790 ~~t~lEv~alDRpGLLa~v~~v~~dl~l~i~~AkItT~GErveD~F~vt~~~~~~l--~~~~~q~l~~~ll~al 861 (867)
T COG2844 790 DKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTFGERVEDVFIVTDADGQAL--NAELRQSLLQRLLEAL 861 (867)
T ss_pred CceEEEEEeCCcccHHHHHHHHHHhcccceeeeeeccccccceeEEEEeccccccC--CHHHHHHHHHHHHHHh
Confidence 34568999999999999999999999999999999999999999999976655543 2233344455554443
No 24
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=98.22 E-value=7.8e-06 Score=85.65 Aligned_cols=72 Identities=18% Similarity=0.228 Sum_probs=61.4
Q ss_pred eeEEEEEEcCCCCChHHHHHHHHHhCCCeeeEEEEEecCCeEEEEEEEeecCCCCchhhhhhHHHHHHHHHHHH
Q 024670 156 FLYKASICCEYRPELMSDLRQALDALPLKMLKAEISTLGGRLKNVIVFTSCKEGNAEASQTLANDVQQALNSVL 229 (264)
Q Consensus 156 ~~V~vev~c~~r~glL~~Il~aLe~lgL~V~~A~Ist~g~r~~~vF~v~~~~~~~~~~~~~~~~~l~qAL~~vl 229 (264)
....++|.|.||||+|++|.++|.++|++|.+|+|+|.++++.++|++....+.... . ...+.|+++|..++
T Consensus 778 ~~t~~~v~~~DrpGll~~i~~~l~~~~~~i~~a~i~t~~~~~~d~F~v~~~~g~~~~-~-~~~~~l~~~L~~~l 849 (850)
T TIGR01693 778 KATIMEVRALDRPGLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYVTDLFGLKLT-D-EEEQRLLEVLAASV 849 (850)
T ss_pred CeEEEEEEECCccHHHHHHHHHHHHCCCeEEEEEEEecCccceeEEEEECCCCCCCC-H-HHHHHHHHHHHHHh
Confidence 567789999999999999999999999999999999999999999999765554432 2 45678888888765
No 25
>PRK03381 PII uridylyl-transferase; Provisional
Probab=98.21 E-value=9.9e-06 Score=84.22 Aligned_cols=68 Identities=24% Similarity=0.281 Sum_probs=56.1
Q ss_pred eeEEEEEEcCCCCChHHHHHHHHHhCCCeeeEEEEEecCCeEEEEEEEeecCCCCchhhhhhHHHHHHHHH
Q 024670 156 FLYKASICCEYRPELMSDLRQALDALPLKMLKAEISTLGGRLKNVIVFTSCKEGNAEASQTLANDVQQALN 226 (264)
Q Consensus 156 ~~V~vev~c~~r~glL~~Il~aLe~lgL~V~~A~Ist~g~r~~~vF~v~~~~~~~~~~~~~~~~~l~qAL~ 226 (264)
....|+|.|.||||||++|..+|..+|++|+.|+|+|.++++.++|+|....+.... .+ .+.|+++|.
T Consensus 706 ~~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~AkI~T~g~~a~D~F~V~d~~g~~~~-~~--~~~l~~~L~ 773 (774)
T PRK03381 706 DATVLEVRAADRPGLLARLARALERAGVDVRWARVATLGADVVDVFYVTGAAGGPLA-DA--RAAVEQAVL 773 (774)
T ss_pred CeEEEEEEeCCchhHHHHHHHHHHHCCCeEEEEEEeecCCeEEEEEEEECCCCCcCc-hH--HHHHHHHhh
Confidence 356789999999999999999999999999999999999999999999765444332 22 566666663
No 26
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=98.14 E-value=3.1e-05 Score=55.01 Aligned_cols=68 Identities=25% Similarity=0.348 Sum_probs=53.0
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeeeEEEEEecCCeEEEEEEEeecCCCCchhhhhhHHHHHHHHHHH
Q 024670 159 KASICCEYRPELMSDLRQALDALPLKMLKAEISTLGGRLKNVIVFTSCKEGNAEASQTLANDVQQALNSV 228 (264)
Q Consensus 159 ~vev~c~~r~glL~~Il~aLe~lgL~V~~A~Ist~g~r~~~vF~v~~~~~~~~~~~~~~~~~l~qAL~~v 228 (264)
.+.+.|+++||+|.+|+.+|.++++.|..+.+.+.+++...+|++....... ......+.|+++|..+
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~l~~~l~~~ 69 (70)
T cd04873 2 VVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSDGRP--LDPERIARLEEALEDA 69 (70)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEECCCCCc--CCHHHHHHHHHHHHhh
Confidence 4678999999999999999999999999999999888888899885543332 1223455677777654
No 27
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=98.07 E-value=7.3e-05 Score=78.61 Aligned_cols=73 Identities=19% Similarity=0.219 Sum_probs=61.2
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCeeeEEEEEe-cCCeEEEEEEEeecCCCCchhhhhhHHHHHHHHHHHHHh
Q 024670 157 LYKASICCEYRPELMSDLRQALDALPLKMLKAEIST-LGGRLKNVIVFTSCKEGNAEASQTLANDVQQALNSVLEK 231 (264)
Q Consensus 157 ~V~vev~c~~r~glL~~Il~aLe~lgL~V~~A~Ist-~g~r~~~vF~v~~~~~~~~~~~~~~~~~l~qAL~~vl~~ 231 (264)
.+.|.|.|+|+||||++|..+|..+||+|+.|.|.| .+|++.++|+|....+... . ....+.|+++|.+++..
T Consensus 677 ~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d~~g~~~-~-~~~~~~l~~~L~~aL~~ 750 (854)
T PRK01759 677 GTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTELNGKLL-E-FDRRRQLEQALTKALNT 750 (854)
T ss_pred eEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeCCCCCCC-C-HHHHHHHHHHHHHHHcC
Confidence 456789999999999999999999999999999976 8999999999976544433 2 33556899999999864
No 28
>KOG0561 consensus bHLH transcription factor [Transcription]
Probab=98.06 E-value=8.6e-06 Score=75.17 Aligned_cols=54 Identities=30% Similarity=0.467 Sum_probs=47.2
Q ss_pred HhhhccHHHHHHHHHHHHhHHHHHccCCC--CCCCChhhHHHHHHHHHHHHHHHHH
Q 024670 73 ALKNHSEAERRRRERINAHLDTLRGLVPP--NGKMDKATLLAEVIRQVKELKTNAI 126 (264)
Q Consensus 73 ~~~~h~~~ER~RR~~in~~~~~Lr~lvP~--~~k~dkasiL~~ai~yik~Lq~~~~ 126 (264)
++.--+.-||||-+-||..|..||+|+|. ..|..||+||+.+.+||.+|..+..
T Consensus 60 RReIANsNERRRMQSINAGFqsLr~LlPr~eGEKLSKAAILQQTa~yI~~Le~~Kt 115 (373)
T KOG0561|consen 60 RREIANSNERRRMQSINAGFQSLRALLPRKEGEKLSKAAILQQTADYIHQLEGHKT 115 (373)
T ss_pred HHHhhcchHHHHHHhhhHHHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHHhccc
Confidence 44555667999999999999999999996 4899999999999999999987543
No 29
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=98.03 E-value=5.5e-05 Score=79.38 Aligned_cols=76 Identities=21% Similarity=0.207 Sum_probs=63.1
Q ss_pred eeEEEEEEcCCCCChHHHHHHHHHhCCCeeeEEEEE-ecCCeEEEEEEEeecCCCCchhhhhhHHHHHHHHHHHHHhc
Q 024670 156 FLYKASICCEYRPELMSDLRQALDALPLKMLKAEIS-TLGGRLKNVIVFTSCKEGNAEASQTLANDVQQALNSVLEKA 232 (264)
Q Consensus 156 ~~V~vev~c~~r~glL~~Il~aLe~lgL~V~~A~Is-t~g~r~~~vF~v~~~~~~~~~~~~~~~~~l~qAL~~vl~~~ 232 (264)
..+.|.|.++|+||+|++|..+|..+||+|+.|+|. |.+|++.++|+|....+.. .......+.|+++|.+++..-
T Consensus 667 ~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~~~g~~-~~~~~~~~~i~~~L~~~L~~~ 743 (850)
T TIGR01693 667 GGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDLFGSP-PAAERVFQELLQGLVDVLAGL 743 (850)
T ss_pred CeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEECCCCCC-CCcHHHHHHHHHHHHHHHcCC
Confidence 455678999999999999999999999999999998 8899999999997655443 223334678999999998653
No 30
>PRK05007 PII uridylyl-transferase; Provisional
Probab=98.02 E-value=0.0001 Score=77.80 Aligned_cols=74 Identities=22% Similarity=0.200 Sum_probs=60.6
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCeeeEEEEEec-CCeEEEEEEEeecCCCCchhhhhhHHHHHHHHHHHHHhc
Q 024670 157 LYKASICCEYRPELMSDLRQALDALPLKMLKAEISTL-GGRLKNVIVFTSCKEGNAEASQTLANDVQQALNSVLEKA 232 (264)
Q Consensus 157 ~V~vev~c~~r~glL~~Il~aLe~lgL~V~~A~Ist~-g~r~~~vF~v~~~~~~~~~~~~~~~~~l~qAL~~vl~~~ 232 (264)
.+.|.|+|+|+||+|++|..+|..+||+|+.|+|.|. +|++.++|+|....+... .....+.|+++|.+++...
T Consensus 701 ~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d~~g~~~--~~~~~~~I~~~L~~aL~~~ 775 (884)
T PRK05007 701 GTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLEPDGSPL--SQDRHQVIRKALEQALTQS 775 (884)
T ss_pred eEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEECCCCCCC--CHHHHHHHHHHHHHHHcCC
Confidence 5567889999999999999999999999999998766 559999999976544433 2335577999999998654
No 31
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=97.76 E-value=0.00022 Score=49.94 Aligned_cols=63 Identities=11% Similarity=0.192 Sum_probs=45.0
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeeeEEEEEecCCeEEEEEEEeecCCCCchhhhhhHHHHHHHHHHH
Q 024670 159 KASICCEYRPELMSDLRQALDALPLKMLKAEISTLGGRLKNVIVFTSCKEGNAEASQTLANDVQQALNSV 228 (264)
Q Consensus 159 ~vev~c~~r~glL~~Il~aLe~lgL~V~~A~Ist~g~r~~~vF~v~~~~~~~~~~~~~~~~~l~qAL~~v 228 (264)
.|.+.|+++||+|.+|+++|.++|+.|..+.+.+.++....+|++... .....+.+.++|+++
T Consensus 2 ~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~~~ 64 (66)
T PF01842_consen 2 RVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVV-------DEEDLEKLLEELEAL 64 (66)
T ss_dssp EEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEE-------EGHGHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEEC-------CCCCHHHHHHHHHcc
Confidence 467899999999999999999999999999998887732222222121 122345666666654
No 32
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=97.75 E-value=4.5e-05 Score=68.66 Aligned_cols=56 Identities=18% Similarity=0.385 Sum_probs=47.6
Q ss_pred HHHhhhccHHHHHHHHHHHHhHHHHHccCCCC--CCC-ChhhHHHHHHHHHHHHHHHHH
Q 024670 71 MVALKNHSEAERRRRERINAHLDTLRGLVPPN--GKM-DKATLLAEVIRQVKELKTNAI 126 (264)
Q Consensus 71 ~~~~~~h~~~ER~RR~~in~~~~~Lr~lvP~~--~k~-dkasiL~~ai~yik~Lq~~~~ 126 (264)
...+..|++-||+||+.|.+.|..|+.+||+. .+. +.++||..|+.||+.|+.+..
T Consensus 57 ~~~R~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~ 115 (232)
T KOG2483|consen 57 ASSRAHHNALEKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSA 115 (232)
T ss_pred CcchhhhhhhhHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHH
Confidence 34568899999999999999999999999976 222 268999999999999998644
No 33
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=97.72 E-value=0.00018 Score=76.10 Aligned_cols=75 Identities=12% Similarity=0.132 Sum_probs=60.7
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCeeeEEEE-EecCCeEEEEEEEeecCCCCchhhhhhHHHHHHHHHHHHHh
Q 024670 157 LYKASICCEYRPELMSDLRQALDALPLKMLKAEI-STLGGRLKNVIVFTSCKEGNAEASQTLANDVQQALNSVLEK 231 (264)
Q Consensus 157 ~V~vev~c~~r~glL~~Il~aLe~lgL~V~~A~I-st~g~r~~~vF~v~~~~~~~~~~~~~~~~~l~qAL~~vl~~ 231 (264)
.+.|.|.|.|+||+|++|..+|..+|++|+.|+| ++.+|.+.++|+|....+..........+.|+++|.+++..
T Consensus 704 ~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~d~~g~~~~~~~~r~~~i~~~L~~~L~~ 779 (895)
T PRK00275 704 GTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDDDGEPIGDNPARIEQIREGLTEALRN 779 (895)
T ss_pred eEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEEeCCCCCCccchHHHHHHHHHHHHHHHcC
Confidence 4556789999999999999999999999999998 67789999999997655443222234557888999888864
No 34
>KOG2588 consensus Predicted DNA-binding protein [Transcription]
Probab=97.72 E-value=1.3e-05 Score=83.31 Aligned_cols=55 Identities=27% Similarity=0.427 Sum_probs=50.3
Q ss_pred HHhhhccHHHHHHHHHHHHhHHHHHccCCCC-CCCChhhHHHHHHHHHHHHHHHHH
Q 024670 72 VALKNHSEAERRRRERINAHLDTLRGLVPPN-GKMDKATLLAEVIRQVKELKTNAI 126 (264)
Q Consensus 72 ~~~~~h~~~ER~RR~~in~~~~~Lr~lvP~~-~k~dkasiL~~ai~yik~Lq~~~~ 126 (264)
+.+.+||.+|||.|-.||++|.+|+.+||+. .|+.|.++|..||+||++|+...+
T Consensus 275 ~kRtAHN~IEKRYRsSINDKI~eLk~lV~g~~aKl~kSavLr~ai~~i~dl~~~nq 330 (953)
T KOG2588|consen 275 EKRTAHNIIEKRYRSSINDKIIELKDLVPGTEAKLNKSAVLRKAIDYIEDLQGYNQ 330 (953)
T ss_pred cccchhhHHHHHhhcchhHHHHHHHHhcCccHhhhhhhhhHHHHHHHHHHhhcccc
Confidence 3468999999999999999999999999986 799999999999999999997544
No 35
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=97.62 E-value=0.0011 Score=49.02 Aligned_cols=66 Identities=15% Similarity=0.281 Sum_probs=52.3
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeeeEEEEEecCCeEEEEEEEeecCCCCchhhhhhHHHHHHHHHHHHHh
Q 024670 158 YKASICCEYRPELMSDLRQALDALPLKMLKAEISTLGGRLKNVIVFTSCKEGNAEASQTLANDVQQALNSVLEK 231 (264)
Q Consensus 158 V~vev~c~~r~glL~~Il~aLe~lgL~V~~A~Ist~g~r~~~vF~v~~~~~~~~~~~~~~~~~l~qAL~~vl~~ 231 (264)
+.|++.++||||++..|..+|.++|.+|..++.++.++++.-++.+.-. ....+.|+.+|..+..+
T Consensus 3 ~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~--------~~~~~~l~~~L~~l~~~ 68 (76)
T PF13740_consen 3 LVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIP--------EDSLERLESALEELAEE 68 (76)
T ss_dssp EEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEES--------HHHHHHHHHHHHHHHHH
T ss_pred EEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeC--------cccHHHHHHHHHHHHHH
Confidence 5678999999999999999999999999999999999999877777333 12457888888877554
No 36
>PRK03381 PII uridylyl-transferase; Provisional
Probab=97.54 E-value=0.00046 Score=71.96 Aligned_cols=70 Identities=17% Similarity=0.154 Sum_probs=58.2
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCeeeEEEEEecCCeEEEEEEEeecCCCCchhhhhhHHHHHHHHHHHHHh
Q 024670 157 LYKASICCEYRPELMSDLRQALDALPLKMLKAEISTLGGRLKNVIVFTSCKEGNAEASQTLANDVQQALNSVLEK 231 (264)
Q Consensus 157 ~V~vev~c~~r~glL~~Il~aLe~lgL~V~~A~Ist~g~r~~~vF~v~~~~~~~~~~~~~~~~~l~qAL~~vl~~ 231 (264)
.+.|.|.|.||||++++|..+|..+|++|++|+|.|.+|.+.++|+|....+... ..+.|+++|.+++..
T Consensus 599 ~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t~dg~~ld~F~V~~~~~~~~-----~~~~l~~~L~~~L~~ 668 (774)
T PRK03381 599 MVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSPRFGSPP-----DAALLRQDLRRALDG 668 (774)
T ss_pred eEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCCCCcc-----hHHHHHHHHHHHHcC
Confidence 4567889999999999999999999999999999999999999999965433321 136788888888764
No 37
>PRK05092 PII uridylyl-transferase; Provisional
Probab=97.51 E-value=0.00083 Score=71.33 Aligned_cols=74 Identities=18% Similarity=0.217 Sum_probs=59.5
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCeeeEEEEEe-cCCeEEEEEEEeecCCCCchhhhhhHHHHHHHHHHHHHh
Q 024670 157 LYKASICCEYRPELMSDLRQALDALPLKMLKAEIST-LGGRLKNVIVFTSCKEGNAEASQTLANDVQQALNSVLEK 231 (264)
Q Consensus 157 ~V~vev~c~~r~glL~~Il~aLe~lgL~V~~A~Ist-~g~r~~~vF~v~~~~~~~~~~~~~~~~~l~qAL~~vl~~ 231 (264)
.+.|.|.|+|+||+|.+|..+|..+|++|+.|+|.| .+|.+.++|+|....+.. .......+.|+++|..++..
T Consensus 732 ~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD~F~V~~~~g~~-~~~~~~~~~l~~~L~~~l~~ 806 (931)
T PRK05092 732 VTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQDAFGRD-EDEPRRLARLAKAIEDALSG 806 (931)
T ss_pred eEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEecCCeEEEEEEEECCCCCC-CCCHHHHHHHHHHHHHHHcC
Confidence 456788999999999999999999999999999876 799999999996544332 22334467888888888753
No 38
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=97.49 E-value=0.0003 Score=63.60 Aligned_cols=68 Identities=22% Similarity=0.347 Sum_probs=51.7
Q ss_pred cCCCCccc-hHHhHHHhhhccHHHHHHHHHHHHhHHHHHccC-CCC-CCCChhhHHHHHHHHHHHHHHHHHHHhc
Q 024670 59 KVGKKEVS-EAKAMVALKNHSEAERRRRERINAHLDTLRGLV-PPN-GKMDKATLLAEVIRQVKELKTNAIEASK 130 (264)
Q Consensus 59 ~~~~k~~~-~~~~~~~~~~h~~~ER~RR~~in~~~~~Lr~lv-P~~-~k~dkasiL~~ai~yik~Lq~~~~~l~~ 130 (264)
+.+||+.. ..|.. .--+.||||=.|+|+-|.+|+.-. +|. ..+-|.-||..||+||..||.-++++.+
T Consensus 107 kackrks~svDRRK----AATMRERRRLkKVNEAFE~LKRrT~~NPNQRLPKVEILRsAI~YIE~Lq~LL~~~~~ 177 (284)
T KOG3960|consen 107 KACKRKSTSVDRRK----AATMRERRRLKKVNEAFETLKRRTSSNPNQRLPKVEILRSAIRYIERLQALLQEQDQ 177 (284)
T ss_pred hhccccccchhHHH----HHHHHHHHHHHHHHHHHHHHHhhcCCCccccccHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 55555543 33333 334579999999999999997654 333 5678999999999999999999988765
No 39
>PRK03059 PII uridylyl-transferase; Provisional
Probab=97.48 E-value=0.00063 Score=71.68 Aligned_cols=73 Identities=16% Similarity=0.209 Sum_probs=59.5
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCeeeEEEE-EecCCeEEEEEEEeecCCCCchhhhhhHHHHHHHHHHHHHh
Q 024670 157 LYKASICCEYRPELMSDLRQALDALPLKMLKAEI-STLGGRLKNVIVFTSCKEGNAEASQTLANDVQQALNSVLEK 231 (264)
Q Consensus 157 ~V~vev~c~~r~glL~~Il~aLe~lgL~V~~A~I-st~g~r~~~vF~v~~~~~~~~~~~~~~~~~l~qAL~~vl~~ 231 (264)
.+.|.|.|+|+||+|++|..+|..+||+|+.|.| ++.+|.+.++|+|....+. .......+.|+++|.+++..
T Consensus 678 ~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~~~~~--~~~~~~~~~i~~~l~~~l~~ 751 (856)
T PRK03059 678 GLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQVLDPEED--VHYRDIINLVEHELAERLAE 751 (856)
T ss_pred eEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEeCCCCC--CChHHHHHHHHHHHHHHHcC
Confidence 3466789999999999999999999999999999 6789999999999654333 12334567889999888864
No 40
>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription]
Probab=97.41 E-value=0.00016 Score=64.68 Aligned_cols=60 Identities=20% Similarity=0.291 Sum_probs=51.6
Q ss_pred HHHhhhccHHHHHHHHHHHHhHHHHHccCCC----CCCCChhhHHHHHHHHHHHHHHHHHHHhc
Q 024670 71 MVALKNHSEAERRRRERINAHLDTLRGLVPP----NGKMDKATLLAEVIRQVKELKTNAIEASK 130 (264)
Q Consensus 71 ~~~~~~h~~~ER~RR~~in~~~~~Lr~lvP~----~~k~dkasiL~~ai~yik~Lq~~~~~l~~ 130 (264)
...+..++..||+|=+.+|..|..||.+||. ..|..|..+|.-||.||+.|+.-++.-..
T Consensus 107 ~~~~~~~n~RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~~~~~ 170 (228)
T KOG4029|consen 107 SAQRQARNARERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLATQEA 170 (228)
T ss_pred hhhhhhhhhhhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhccccc
Confidence 3456778888999999999999999999994 46789999999999999999998776443
No 41
>PLN03217 transcription factor ATBS1; Provisional
Probab=97.31 E-value=0.00046 Score=52.70 Aligned_cols=46 Identities=22% Similarity=0.353 Sum_probs=39.6
Q ss_pred HHHHHhHHHHHccCCCC------CCCChhhHHHHHHHHHHHHHHHHHHHhcc
Q 024670 86 ERINAHLDTLRGLVPPN------GKMDKATLLAEVIRQVKELKTNAIEASKG 131 (264)
Q Consensus 86 ~~in~~~~~Lr~lvP~~------~k~dkasiL~~ai~yik~Lq~~~~~l~~~ 131 (264)
+.||+.+..|++|+|.. .|..-+-+|+|+..||+.|+.+|..|.+.
T Consensus 20 dqi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLhrEvDdLSer 71 (93)
T PLN03217 20 DQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDLSER 71 (93)
T ss_pred HHHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999953 34455568999999999999999998875
No 42
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=97.28 E-value=0.0036 Score=46.52 Aligned_cols=67 Identities=15% Similarity=0.250 Sum_probs=51.8
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeeeEEEEEecCCeEEEEEEEeecCCCCchhhhhhHHHHHHHHHHHHHhc
Q 024670 158 YKASICCEYRPELMSDLRQALDALPLKMLKAEISTLGGRLKNVIVFTSCKEGNAEASQTLANDVQQALNSVLEKA 232 (264)
Q Consensus 158 V~vev~c~~r~glL~~Il~aLe~lgL~V~~A~Ist~g~r~~~vF~v~~~~~~~~~~~~~~~~~l~qAL~~vl~~~ 232 (264)
+.+.+.|+|+||+.+.|.+.|.++|..|+.++....++++.-.+.+... . .....|+++|..+..++
T Consensus 2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~~---~-----~~~~~l~~~l~~~~~~~ 68 (77)
T cd04893 2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVEGS---W-----DAIAKLEAALPGLARRL 68 (77)
T ss_pred EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEec---c-----ccHHHHHHHHHHHHHHc
Confidence 4578999999999999999999999999999999988877554444322 1 13467788887765543
No 43
>PRK04374 PII uridylyl-transferase; Provisional
Probab=97.18 E-value=0.0021 Score=67.97 Aligned_cols=72 Identities=14% Similarity=0.097 Sum_probs=58.2
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCeeeEEEEEe-cCCeEEEEEEEeecCCCCchhhhhhHHHHHHHHHHHHHhc
Q 024670 157 LYKASICCEYRPELMSDLRQALDALPLKMLKAEIST-LGGRLKNVIVFTSCKEGNAEASQTLANDVQQALNSVLEKA 232 (264)
Q Consensus 157 ~V~vev~c~~r~glL~~Il~aLe~lgL~V~~A~Ist-~g~r~~~vF~v~~~~~~~~~~~~~~~~~l~qAL~~vl~~~ 232 (264)
.+.|.|.|.++||+|++|..+|..+|++|+.|+|.| .+|.+.++|+|....+... .....|+++|.+++...
T Consensus 690 ~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~~~~~~~----~~~~~i~~~l~~~l~~~ 762 (869)
T PRK04374 690 ALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLPQDTYAD----GDPQRLAAALRQVLAGD 762 (869)
T ss_pred eEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeCCCCCCh----HHHHHHHHHHHHHHcCC
Confidence 346678999999999999999999999999999975 7999999999965544321 22455888888888653
No 44
>PRK00194 hypothetical protein; Validated
Probab=96.97 E-value=0.0068 Score=45.88 Aligned_cols=71 Identities=8% Similarity=0.178 Sum_probs=51.8
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCeeeEEEEEecCCeEEEEEEEeecCCCCchhhhhhHHHHHHHHHHHHHhcC
Q 024670 157 LYKASICCEYRPELMSDLRQALDALPLKMLKAEISTLGGRLKNVIVFTSCKEGNAEASQTLANDVQQALNSVLEKAS 233 (264)
Q Consensus 157 ~V~vev~c~~r~glL~~Il~aLe~lgL~V~~A~Ist~g~r~~~vF~v~~~~~~~~~~~~~~~~~l~qAL~~vl~~~~ 233 (264)
.+.+.+.|+|+||++.+|.+.|.++|+.|...+-.+.++++.-.+.+.-. . .....+.|+++|..+-...+
T Consensus 3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v~~~--~----~~~~~~~l~~~l~~l~~~~~ 73 (90)
T PRK00194 3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLVDIS--E----SKKDFAELKEELEELGKELG 73 (90)
T ss_pred eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEEEec--C----CCCCHHHHHHHHHHHHHHcC
Confidence 35678999999999999999999999999999988888766544444211 1 01224677888777654433
No 45
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=96.94 E-value=0.0065 Score=44.90 Aligned_cols=49 Identities=18% Similarity=0.295 Sum_probs=39.3
Q ss_pred ceeEEEEEEcCCCCChHHHHHHHHHhCCCeeeEEEEEec--CCeEEEEEEE
Q 024670 155 DFLYKASICCEYRPELMSDLRQALDALPLKMLKAEISTL--GGRLKNVIVF 203 (264)
Q Consensus 155 ~~~V~vev~c~~r~glL~~Il~aLe~lgL~V~~A~Ist~--g~r~~~vF~v 203 (264)
.+.+.+++.+.+|+|+|.+|++++.+.++.|...++.+. ++.+.-.|.+
T Consensus 4 ~f~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v 54 (80)
T PF13291_consen 4 SFPVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTV 54 (80)
T ss_dssp -EEEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEE
T ss_pred EEEEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEE
Confidence 478899999999999999999999999999999999885 5666555555
No 46
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.93 E-value=0.0061 Score=46.11 Aligned_cols=70 Identities=13% Similarity=0.222 Sum_probs=52.6
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeeeEEEEEecCCeEEEEEEEeecCCCCchhhhhhHHHHHHHHHHHHHhcC
Q 024670 158 YKASICCEYRPELMSDLRQALDALPLKMLKAEISTLGGRLKNVIVFTSCKEGNAEASQTLANDVQQALNSVLEKAS 233 (264)
Q Consensus 158 V~vev~c~~r~glL~~Il~aLe~lgL~V~~A~Ist~g~r~~~vF~v~~~~~~~~~~~~~~~~~l~qAL~~vl~~~~ 233 (264)
..+.+.|+|+||++++|.+.|.++|+.|...+..+.++++.-.+.+.-. . .......++++|..+-...+
T Consensus 2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~~~-~-----~~~~~~~L~~~l~~l~~~~~ 71 (88)
T cd04872 2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVDIS-E-----SNLDFAELQEELEELGKELG 71 (88)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEEeC-C-----CCCCHHHHHHHHHHHHHHcC
Confidence 3578999999999999999999999999999998888876655555321 1 01235678888877665543
No 47
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.82 E-value=0.012 Score=43.15 Aligned_cols=65 Identities=20% Similarity=0.216 Sum_probs=50.6
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCeeeEEEEEecCCeEEEEEEEeecCCCCchhhhhhHHHHHHHHHHHHHh
Q 024670 160 ASICCEYRPELMSDLRQALDALPLKMLKAEISTLGGRLKNVIVFTSCKEGNAEASQTLANDVQQALNSVLEK 231 (264)
Q Consensus 160 vev~c~~r~glL~~Il~aLe~lgL~V~~A~Ist~g~r~~~vF~v~~~~~~~~~~~~~~~~~l~qAL~~vl~~ 231 (264)
|++.+.||||+..++.++|.++|+.|.+.+.++.++++.-.|.+.-... ...+.++++|......
T Consensus 2 vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~p~~-------~~~~~l~~~l~~l~~~ 66 (75)
T cd04870 2 ITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQIPDS-------ADSEALLKDLLFKAHE 66 (75)
T ss_pred EEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEcCCC-------CCHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999988776666632211 1246777777766543
No 48
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=96.70 E-value=0.023 Score=41.77 Aligned_cols=66 Identities=12% Similarity=0.168 Sum_probs=47.6
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCeeeEEEEEecC------CeEEEEEEEeecCCCCchhhhhhHHHHHHHHHHHHHhc
Q 024670 160 ASICCEYRPELMSDLRQALDALPLKMLKAEISTLG------GRLKNVIVFTSCKEGNAEASQTLANDVQQALNSVLEKA 232 (264)
Q Consensus 160 vev~c~~r~glL~~Il~aLe~lgL~V~~A~Ist~g------~r~~~vF~v~~~~~~~~~~~~~~~~~l~qAL~~vl~~~ 232 (264)
|.+.|+++||++.+|.+.|.++|+.|.+.+..+.+ +++.-.+.+.-. . ......++++|..+-.+.
T Consensus 2 l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p--~-----~~~~~~l~~~l~~l~~~~ 73 (81)
T cd04869 2 VEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALP--A-----GTDLDALREELEELCDDL 73 (81)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecC--C-----CCCHHHHHHHHHHHHHHh
Confidence 57899999999999999999999999999998877 444333333211 1 123467777777765543
No 49
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.67 E-value=0.0099 Score=43.22 Aligned_cols=65 Identities=18% Similarity=0.119 Sum_probs=51.8
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeeeEEEEEecCCeEEEEEEEeecCCCCchhhhhhHHHHHHHHHH
Q 024670 159 KASICCEYRPELMSDLRQALDALPLKMLKAEISTLGGRLKNVIVFTSCKEGNAEASQTLANDVQQALNS 227 (264)
Q Consensus 159 ~vev~c~~r~glL~~Il~aLe~lgL~V~~A~Ist~g~r~~~vF~v~~~~~~~~~~~~~~~~~l~qAL~~ 227 (264)
.|.+.|+|+.||-.+|.+.+-++||.|++..++|-|..-.-+|.|....... ...=+.|++.|.+
T Consensus 2 vitvnCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv~~~~~~----~~rW~lLK~RL~~ 66 (69)
T cd04894 2 VITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVPRPPSI----KVRWDLLKNRLMS 66 (69)
T ss_pred EEEEeCCCccCcccHHHHHHHHhceEEEecccccCCcEEEEEEEEecCCCCC----cccHHHHHHHHHh
Confidence 3688999999999999999999999999999999999888888885533221 2334567777654
No 50
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.53 E-value=0.019 Score=59.85 Aligned_cols=75 Identities=17% Similarity=0.185 Sum_probs=58.8
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeeeEEEE-EecCCeEEEEEEEeecCCCCchhhhhhHHHHHHHHHHHHHhcCCC
Q 024670 159 KASICCEYRPELMSDLRQALDALPLKMLKAEI-STLGGRLKNVIVFTSCKEGNAEASQTLANDVQQALNSVLEKASPS 235 (264)
Q Consensus 159 ~vev~c~~r~glL~~Il~aLe~lgL~V~~A~I-st~g~r~~~vF~v~~~~~~~~~~~~~~~~~l~qAL~~vl~~~~~s 235 (264)
.|-|.|+++|.++..+..++...|++|+.|+| +|.+|++.|+|+|..-.+...+ ......++++|.+++..-...
T Consensus 686 eV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~~~~g~~~~--~dr~~~~~~~l~~~l~s~~~~ 761 (867)
T COG2844 686 EVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEPDGFPVE--EDRRAALRGELIEALLSGKAQ 761 (867)
T ss_pred EEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEEecCCCCccc--hhHHHHHHHHHHHHHhcCCCC
Confidence 34669999999999999999999999999998 6789999999999655544432 334456777777777655544
No 51
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.50 E-value=0.048 Score=39.70 Aligned_cols=68 Identities=10% Similarity=0.087 Sum_probs=44.9
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCeeeEEEEEecCCeEEEEEEEeecCCCCchhhhhhHHHHHHHHHHHHHh
Q 024670 160 ASICCEYRPELMSDLRQALDALPLKMLKAEISTLGGRLKNVIVFTSCKEGNAEASQTLANDVQQALNSVLEK 231 (264)
Q Consensus 160 vev~c~~r~glL~~Il~aLe~lgL~V~~A~Ist~g~r~~~vF~v~~~~~~~~~~~~~~~~~l~qAL~~vl~~ 231 (264)
|++.|+|+||++.+|.+.|.++|+.|...+..+..+.. .|++.-.-.... .....+.++++|..+-..
T Consensus 2 i~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~~~~--~f~~~~~~~~~~--~~~~~~~l~~~l~~l~~~ 69 (74)
T cd04875 2 LTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPDSG--RFFMRVEFELEG--FDLSREALEAAFAPVAAE 69 (74)
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecCCCC--eEEEEEEEEeCC--CCCCHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999887522211 132211111110 012357888888776544
No 52
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.95 E-value=0.076 Score=38.15 Aligned_cols=44 Identities=11% Similarity=0.120 Sum_probs=35.4
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCeeeEEEEEecC-CeEEEEEEE
Q 024670 160 ASICCEYRPELMSDLRQALDALPLKMLKAEISTLG-GRLKNVIVF 203 (264)
Q Consensus 160 vev~c~~r~glL~~Il~aLe~lgL~V~~A~Ist~g-~r~~~vF~v 203 (264)
+.+.+.++||+|.+|++++.+.|..|...+..+.. +.+.-.|.+
T Consensus 2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~v 46 (74)
T cd04887 2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITV 46 (74)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEE
Confidence 56789999999999999999999999999887653 444433434
No 53
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.92 E-value=0.089 Score=36.72 Aligned_cols=33 Identities=9% Similarity=0.144 Sum_probs=29.3
Q ss_pred EEEcCCCCChHHHHHHHHHhCCCeeeEEEEEec
Q 024670 161 SICCEYRPELMSDLRQALDALPLKMLKAEISTL 193 (264)
Q Consensus 161 ev~c~~r~glL~~Il~aLe~lgL~V~~A~Ist~ 193 (264)
.+.++++||.|.+|+++|.+.|+.|.+......
T Consensus 2 ~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~ 34 (73)
T cd04886 2 RVELPDRPGQLAKLLAVIAEAGANIIEVSHDRA 34 (73)
T ss_pred EEEeCCCCChHHHHHHHHHHcCCCEEEEEEEec
Confidence 568899999999999999999999998876653
No 54
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=95.84 E-value=0.14 Score=47.53 Aligned_cols=92 Identities=15% Similarity=0.179 Sum_probs=61.5
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCeeeEEEEEe--cCCeEEEEEEEeecCCCCchhhhhhHHHHHHHHHHHHHhcCC
Q 024670 157 LYKASICCEYRPELMSDLRQALDALPLKMLKAEIST--LGGRLKNVIVFTSCKEGNAEASQTLANDVQQALNSVLEKASP 234 (264)
Q Consensus 157 ~V~vev~c~~r~glL~~Il~aLe~lgL~V~~A~Ist--~g~r~~~vF~v~~~~~~~~~~~~~~~~~l~qAL~~vl~~~~~ 234 (264)
.+.|++.|+||||+..+|.++|.++|+.|.+.+.++ .++.+.-.+.+ .... .....+.|+++|..+-+..+.
T Consensus 6 ~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v---~~~~---~~~~~~~L~~~L~~l~~~l~l 79 (286)
T PRK06027 6 RYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEF---EGDG---LIFNLETLRADFAALAEEFEM 79 (286)
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEE---EeCC---CCCCHHHHHHHHHHHHHHhCC
Confidence 456799999999999999999999999999999998 77743222222 1101 112357888888887665544
Q ss_pred CCCCCCCCCCCCCcceeEeeecCC
Q 024670 235 SPEYSPRTTLPNKRQRISFLDSSS 258 (264)
Q Consensus 235 s~~~~~~~~~~~kr~r~~~~~~~~ 258 (264)
.-.. ....++-|+-+|=|.+
T Consensus 80 ~i~l----~~~~~~~ri~vl~Sg~ 99 (286)
T PRK06027 80 DWRL----LDSAERKRVVILVSKE 99 (286)
T ss_pred EEEE----cccccCcEEEEEEcCC
Confidence 2211 1123446787776655
No 55
>KOG3910 consensus Helix loop helix transcription factor [Transcription]
Probab=95.72 E-value=0.01 Score=58.40 Aligned_cols=60 Identities=18% Similarity=0.194 Sum_probs=50.4
Q ss_pred HHhHHHhhhccHHHHHHHHHHHHhHHHHHccCCCCCC----CChhhHHHHHHHHHHHHHHHHHH
Q 024670 68 AKAMVALKNHSEAERRRRERINAHLDTLRGLVPPNGK----MDKATLLAEVIRQVKELKTNAIE 127 (264)
Q Consensus 68 ~~~~~~~~~h~~~ER~RR~~in~~~~~Lr~lvP~~~k----~dkasiL~~ai~yik~Lq~~~~~ 127 (264)
.|..+++..++..||-|=..||+.|.+|..+.----| .-|.-||..||.-|-.|++||.|
T Consensus 521 eREkERR~aNNARERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVRE 584 (632)
T KOG3910|consen 521 EREKERRMANNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVRE 584 (632)
T ss_pred hHHHHHHhhhhhhhheehhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHHH
Confidence 5556788999999999988899999999988642222 35889999999999999999987
No 56
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.53 E-value=0.098 Score=37.60 Aligned_cols=46 Identities=20% Similarity=0.246 Sum_probs=36.0
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeeeEEEEEec-CCeEEEEEEE
Q 024670 158 YKASICCEYRPELMSDLRQALDALPLKMLKAEISTL-GGRLKNVIVF 203 (264)
Q Consensus 158 V~vev~c~~r~glL~~Il~aLe~lgL~V~~A~Ist~-g~r~~~vF~v 203 (264)
+++.+.+.++||+|.+|+++|.+.++.|...+..+. ++...-.|.+
T Consensus 1 ~~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v 47 (76)
T cd04888 1 VTLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISI 47 (76)
T ss_pred CEEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEE
Confidence 357889999999999999999999999999877553 3444434444
No 57
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=95.45 E-value=0.14 Score=47.74 Aligned_cols=94 Identities=14% Similarity=0.210 Sum_probs=59.8
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeeeEEEEE--ecCCeEEEEEEEeecCCCCchhhhhhHHHHHHHHHHHHHhcCCC
Q 024670 158 YKASICCEYRPELMSDLRQALDALPLKMLKAEIS--TLGGRLKNVIVFTSCKEGNAEASQTLANDVQQALNSVLEKASPS 235 (264)
Q Consensus 158 V~vev~c~~r~glL~~Il~aLe~lgL~V~~A~Is--t~g~r~~~vF~v~~~~~~~~~~~~~~~~~l~qAL~~vl~~~~~s 235 (264)
+.|++.|+|+||+.+.|.+.|.++|+.|++.+-. +..+.++-.+.+ .+... .......|+++|..+-...+..
T Consensus 10 ~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ffm~i~~-~~~~~----~~~~~~~l~~~l~~l~~~l~l~ 84 (289)
T PRK13010 10 YVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFMRVSF-HAQSA----EAASVDTFRQEFQPVAEKFDMQ 84 (289)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcEEEEEEE-EcCCC----CCCCHHHHHHHHHHHHHHhCCe
Confidence 4578999999999999999999999999999875 333333211112 11111 1234678899998887765543
Q ss_pred CCCCCCCCCCCCcceeEeeecCCCC
Q 024670 236 PEYSPRTTLPNKRQRISFLDSSSSS 260 (264)
Q Consensus 236 ~~~~~~~~~~~kr~r~~~~~~~~~~ 260 (264)
-.. .. ..++.|+-+|=|.+.|
T Consensus 85 ~~i--~~--~~~~~kiavl~Sg~g~ 105 (289)
T PRK13010 85 WAI--HP--DGQRPKVVIMVSKFDH 105 (289)
T ss_pred EEE--ec--CCCCeEEEEEEeCCCc
Confidence 211 11 1223578777665543
No 58
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=95.04 E-value=0.32 Score=45.02 Aligned_cols=90 Identities=19% Similarity=0.239 Sum_probs=57.9
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCeeeEEEEEec--CCeEEEEEEEeecCCCCchhhhhhHHHHHHHHHH-HHHhcCCCC
Q 024670 160 ASICCEYRPELMSDLRQALDALPLKMLKAEISTL--GGRLKNVIVFTSCKEGNAEASQTLANDVQQALNS-VLEKASPSP 236 (264)
Q Consensus 160 vev~c~~r~glL~~Il~aLe~lgL~V~~A~Ist~--g~r~~~vF~v~~~~~~~~~~~~~~~~~l~qAL~~-vl~~~~~s~ 236 (264)
+++.|+|+||+.+.|.+.|.++|..|+..+-+.. ++++.=.+.+. .. . .......|+++|.. +-...+..-
T Consensus 3 itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~-~~-~----~~~~~~~l~~~l~~~~~~~~~l~i 76 (280)
T TIGR00655 3 LLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQ-LE-G----FRLEESSLLAAFKSALAEKFEMTW 76 (280)
T ss_pred EEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEE-eC-C----CCCCHHHHHHHHHHHHHHHhCCEE
Confidence 6889999999999999999999999999998774 35444222332 11 1 11235688888888 655544321
Q ss_pred CCCCCCCCCCCcceeEeeecCCC
Q 024670 237 EYSPRTTLPNKRQRISFLDSSSS 259 (264)
Q Consensus 237 ~~~~~~~~~~kr~r~~~~~~~~~ 259 (264)
... ...++.|+-+|=|-+-
T Consensus 77 ~l~----~~~~~~ki~vl~Sg~g 95 (280)
T TIGR00655 77 ELI----LADKLKRVAILVSKED 95 (280)
T ss_pred EEe----cCCCCcEEEEEEcCCC
Confidence 110 1123357777766543
No 59
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=94.62 E-value=0.35 Score=32.29 Aligned_cols=34 Identities=18% Similarity=0.294 Sum_probs=30.7
Q ss_pred EEEcCCCCChHHHHHHHHHhCCCeeeEEEEEecC
Q 024670 161 SICCEYRPELMSDLRQALDALPLKMLKAEISTLG 194 (264)
Q Consensus 161 ev~c~~r~glL~~Il~aLe~lgL~V~~A~Ist~g 194 (264)
++.++++||.+.+|++.|.++++.+....+...+
T Consensus 2 ~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~ 35 (71)
T cd04876 2 RVEAIDRPGLLADITTVIAEEKINILSVNTRTDD 35 (71)
T ss_pred EEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECC
Confidence 5679999999999999999999999999887665
No 60
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=94.31 E-value=0.5 Score=34.25 Aligned_cols=42 Identities=7% Similarity=0.077 Sum_probs=33.5
Q ss_pred EEcCCCCChHHHHHHHHHhCCCeeeEEEEEecCC-eEEEEEEE
Q 024670 162 ICCEYRPELMSDLRQALDALPLKMLKAEISTLGG-RLKNVIVF 203 (264)
Q Consensus 162 v~c~~r~glL~~Il~aLe~lgL~V~~A~Ist~g~-r~~~vF~v 203 (264)
+..+++||.|+++++.|..+|+.+.+.+.....+ .....|++
T Consensus 4 ~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~i 46 (75)
T cd04880 4 FSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFV 46 (75)
T ss_pred EEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEE
Confidence 4567899999999999999999999998765544 34455666
No 61
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=94.26 E-value=0.48 Score=43.99 Aligned_cols=92 Identities=8% Similarity=0.034 Sum_probs=56.6
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCeeeEEEEEec-CCeEEEEEEEeecCCCCchhhhhhHHHHHHHHHHHHHhcCCC
Q 024670 157 LYKASICCEYRPELMSDLRQALDALPLKMLKAEISTL-GGRLKNVIVFTSCKEGNAEASQTLANDVQQALNSVLEKASPS 235 (264)
Q Consensus 157 ~V~vev~c~~r~glL~~Il~aLe~lgL~V~~A~Ist~-g~r~~~vF~v~~~~~~~~~~~~~~~~~l~qAL~~vl~~~~~s 235 (264)
.+.|++.|+||||+..+|.+.|.++|++|...+..+. ++..+. ..+...... ......|+++|..+-...+..
T Consensus 7 ~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~-m~~~~~~p~-----~~~~~~L~~~L~~l~~~l~l~ 80 (286)
T PRK13011 7 TFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFF-MRVEFHSEE-----GLDEDALRAGFAPIAARFGMQ 80 (286)
T ss_pred eEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEE-EEEEEecCC-----CCCHHHHHHHHHHHHHHhCcE
Confidence 3557899999999999999999999999999987632 222211 122111111 123578888888876554432
Q ss_pred CCCCCCCCCCCCcceeEeeecCC
Q 024670 236 PEYSPRTTLPNKRQRISFLDSSS 258 (264)
Q Consensus 236 ~~~~~~~~~~~kr~r~~~~~~~~ 258 (264)
-.. . . ..+.-|+-+|-|.+
T Consensus 81 i~i--~-~-~~~~~ri~vl~Sg~ 99 (286)
T PRK13011 81 WEL--H-D-PAARPKVLIMVSKF 99 (286)
T ss_pred EEE--e-e-cccCceEEEEEcCC
Confidence 111 0 0 11225787777664
No 62
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=94.19 E-value=0.68 Score=34.08 Aligned_cols=46 Identities=13% Similarity=0.133 Sum_probs=35.6
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCeeeEEEEEecC-CeEEEEEEEee
Q 024670 160 ASICCEYRPELMSDLRQALDALPLKMLKAEISTLG-GRLKNVIVFTS 205 (264)
Q Consensus 160 vev~c~~r~glL~~Il~aLe~lgL~V~~A~Ist~g-~r~~~vF~v~~ 205 (264)
+.+..+++||.|.+|++.|.++|+.+.+....... +....+|++..
T Consensus 4 l~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~ 50 (80)
T cd04905 4 IVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDF 50 (80)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEE
Confidence 44566889999999999999999999999876553 34446677733
No 63
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.11 E-value=0.4 Score=33.82 Aligned_cols=35 Identities=6% Similarity=0.106 Sum_probs=31.1
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeeeEEEEEec
Q 024670 159 KASICCEYRPELMSDLRQALDALPLKMLKAEISTL 193 (264)
Q Consensus 159 ~vev~c~~r~glL~~Il~aLe~lgL~V~~A~Ist~ 193 (264)
.+.+.+.+++|+|.+|++.|.+.++.|......+.
T Consensus 2 yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~ 36 (79)
T cd04881 2 YLRLTVKDKPGVLAKITGILAEHGISIESVIQKEA 36 (79)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEccc
Confidence 46788999999999999999999999998887654
No 64
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=94.07 E-value=0.59 Score=32.31 Aligned_cols=44 Identities=14% Similarity=0.202 Sum_probs=34.8
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCeeeEEEEEec--CCeEEEEEEE
Q 024670 160 ASICCEYRPELMSDLRQALDALPLKMLKAEISTL--GGRLKNVIVF 203 (264)
Q Consensus 160 vev~c~~r~glL~~Il~aLe~lgL~V~~A~Ist~--g~r~~~vF~v 203 (264)
+.+.+.+++|+|.+|++.|.+.++.|......+. ++...-+|.+
T Consensus 3 l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~ 48 (72)
T cd04878 3 LSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVV 48 (72)
T ss_pred EEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEE
Confidence 4678899999999999999999999999888764 3444444444
No 65
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=94.02 E-value=0.23 Score=36.15 Aligned_cols=35 Identities=20% Similarity=0.286 Sum_probs=32.4
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeeeEEEEEec
Q 024670 159 KASICCEYRPELMSDLRQALDALPLKMLKAEISTL 193 (264)
Q Consensus 159 ~vev~c~~r~glL~~Il~aLe~lgL~V~~A~Ist~ 193 (264)
.+++.|.+|+|+|.+|+.++.+.+..|...++.+.
T Consensus 2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~ 36 (74)
T cd04877 2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK 36 (74)
T ss_pred EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC
Confidence 46889999999999999999999999999998775
No 66
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=93.87 E-value=0.42 Score=30.09 Aligned_cols=35 Identities=20% Similarity=0.302 Sum_probs=30.7
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCeeeEEEEEecC
Q 024670 160 ASICCEYRPELMSDLRQALDALPLKMLKAEISTLG 194 (264)
Q Consensus 160 vev~c~~r~glL~~Il~aLe~lgL~V~~A~Ist~g 194 (264)
|.+.|++.+|.+.+|+++|...++.|.........
T Consensus 1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~ 35 (60)
T cd02116 1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSG 35 (60)
T ss_pred CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcC
Confidence 35788999999999999999999999999876653
No 67
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=93.70 E-value=0.35 Score=44.69 Aligned_cols=91 Identities=13% Similarity=0.184 Sum_probs=60.2
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeeeEEEEEecCCeEEEEEEEeecCCCCchhhhhhHHHHHHHHHHHHHhcCCCCC
Q 024670 158 YKASICCEYRPELMSDLRQALDALPLKMLKAEISTLGGRLKNVIVFTSCKEGNAEASQTLANDVQQALNSVLEKASPSPE 237 (264)
Q Consensus 158 V~vev~c~~r~glL~~Il~aLe~lgL~V~~A~Ist~g~r~~~vF~v~~~~~~~~~~~~~~~~~l~qAL~~vl~~~~~s~~ 237 (264)
..+.++|++++|+...|...|.+.|..|++++-.+ +.....|.+...-.... .....+.+++++..+.+++...-.
T Consensus 8 ~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~--D~~~g~FFmR~~f~~~~--~~~~~~~l~~~f~~~a~~f~m~~~ 83 (287)
T COG0788 8 FILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFD--DPETGRFFMRVEFEGEG--GPLDREALRAAFAPLAEEFGMDWR 83 (287)
T ss_pred eEEEEecCCCCCcHHHHHHHHHHcCCceeeccccc--ccccCeEEEEEEEecCC--CcccHHHHHHHHHHHHHhhCceeE
Confidence 45688999999999999999999999999998663 33223344433222211 224567888888888776664432
Q ss_pred CCCCCCCCCCcceeEeeec
Q 024670 238 YSPRTTLPNKRQRISFLDS 256 (264)
Q Consensus 238 ~~~~~~~~~kr~r~~~~~~ 256 (264)
. ....+|.|+-+|=|
T Consensus 84 ~----~~~~~~~ri~i~VS 98 (287)
T COG0788 84 L----HDAAQRKRIAILVS 98 (287)
T ss_pred E----eccccCceEEEEEe
Confidence 2 22344566776654
No 68
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=93.49 E-value=0.31 Score=33.54 Aligned_cols=44 Identities=11% Similarity=0.126 Sum_probs=36.2
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCeeeEEEEEecC--CeEEEEEEE
Q 024670 160 ASICCEYRPELMSDLRQALDALPLKMLKAEISTLG--GRLKNVIVF 203 (264)
Q Consensus 160 vev~c~~r~glL~~Il~aLe~lgL~V~~A~Ist~g--~r~~~vF~v 203 (264)
+.+.+++++|++.+|++.|.+.++.|.+..+.... +...-.|.+
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v 47 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDV 47 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEc
Confidence 46789999999999999999999999999987754 555545555
No 69
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=93.41 E-value=0.043 Score=46.49 Aligned_cols=53 Identities=23% Similarity=0.293 Sum_probs=45.9
Q ss_pred HhhhccHHHHHHHHHHHHhHHHHHccCCC--CCCCChhhHHHHHHHHHHHHHHHH
Q 024670 73 ALKNHSEAERRRRERINAHLDTLRGLVPP--NGKMDKATLLAEVIRQVKELKTNA 125 (264)
Q Consensus 73 ~~~~h~~~ER~RR~~in~~~~~Lr~lvP~--~~k~dkasiL~~ai~yik~Lq~~~ 125 (264)
.+.-|+..||+|-..+|+.|..||.++|. ..|..|.--|.-|..||-.|-+-.
T Consensus 78 qrv~anvrerqRtqsLn~AF~~lr~iiptlPsdklSkiqtLklA~ryidfl~~vl 132 (173)
T KOG4447|consen 78 QRVMANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQVL 132 (173)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHhhcCCCCccccccccchhhcccCCchhhhcc
Confidence 56789999999999999999999999994 477778778999999999886543
No 70
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=93.38 E-value=0.3 Score=42.81 Aligned_cols=66 Identities=8% Similarity=0.153 Sum_probs=51.1
Q ss_pred eeEEEEEEcCCCCChHHHHHHHHHhCCCeeeEEEEEecCCeEEEEEEEeecCCCCchhhhhhHHHHHHHHHHHH
Q 024670 156 FLYKASICCEYRPELMSDLRQALDALPLKMLKAEISTLGGRLKNVIVFTSCKEGNAEASQTLANDVQQALNSVL 229 (264)
Q Consensus 156 ~~V~vev~c~~r~glL~~Il~aLe~lgL~V~~A~Ist~g~r~~~vF~v~~~~~~~~~~~~~~~~~l~qAL~~vl 229 (264)
..+.|++.++||||+...|.++|.++|..|..++.+..+|.+.-++.+... ......|+.+|..+-
T Consensus 7 ~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lvs~~--------~~~~~~le~~L~~l~ 72 (190)
T PRK11589 7 HYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLLSGS--------WNAITLIESTLPLKG 72 (190)
T ss_pred cEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEEeCC--------hhHHHHHHHHHHhhh
Confidence 356689999999999999999999999999999999999977655555111 113456666665554
No 71
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.37 E-value=0.49 Score=32.91 Aligned_cols=35 Identities=17% Similarity=0.145 Sum_probs=31.1
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeeeEEEEEec
Q 024670 159 KASICCEYRPELMSDLRQALDALPLKMLKAEISTL 193 (264)
Q Consensus 159 ~vev~c~~r~glL~~Il~aLe~lgL~V~~A~Ist~ 193 (264)
.+.+.+++++|.|.++++.|.++++.|......+.
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~ 36 (72)
T cd04874 2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIE 36 (72)
T ss_pred eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEecc
Confidence 35778999999999999999999999998887665
No 72
>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription]
Probab=93.30 E-value=0.04 Score=55.02 Aligned_cols=40 Identities=35% Similarity=0.590 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHhHHHHHccCCC----CCCCChhhHHHHHHHHHH
Q 024670 80 AERRRRERINAHLDTLRGLVPP----NGKMDKATLLAEVIRQVK 119 (264)
Q Consensus 80 ~ER~RR~~in~~~~~Lr~lvP~----~~k~dkasiL~~ai~yik 119 (264)
--+|-|+|+|..+..|.+|+|- .+|.||.|||.=+|.|++
T Consensus 32 PSKRHRdRLNaELD~lAsLLPfpqdiisKLDkLSVLRLSVSyLr 75 (712)
T KOG3560|consen 32 PSKRHRDRLNAELDHLASLLPFPQDIISKLDKLSVLRLSVSYLR 75 (712)
T ss_pred cchhHHHHhhhHHHHHHHhcCCCHHHHhhhhhhhhhhhhHHHHH
Confidence 3456679999999999999994 489999999999999985
No 73
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=93.27 E-value=0.41 Score=32.62 Aligned_cols=43 Identities=14% Similarity=0.212 Sum_probs=35.4
Q ss_pred EEEcCCCCChHHHHHHHHHhCCCeeeEEEEEecC-CeEEEEEEE
Q 024670 161 SICCEYRPELMSDLRQALDALPLKMLKAEISTLG-GRLKNVIVF 203 (264)
Q Consensus 161 ev~c~~r~glL~~Il~aLe~lgL~V~~A~Ist~g-~r~~~vF~v 203 (264)
.+..+++||.|.+++++|.+.|+.|....+...+ +...-.|.+
T Consensus 2 ~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v 45 (56)
T cd04889 2 SVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIF 45 (56)
T ss_pred EEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEE
Confidence 4688999999999999999999999888877655 666555555
No 74
>PRK04435 hypothetical protein; Provisional
Probab=92.66 E-value=0.96 Score=37.86 Aligned_cols=48 Identities=19% Similarity=0.150 Sum_probs=38.5
Q ss_pred eeEEEEEEcCCCCChHHHHHHHHHhCCCeeeEEEEEec-CCeEEEEEEE
Q 024670 156 FLYKASICCEYRPELMSDLRQALDALPLKMLKAEISTL-GGRLKNVIVF 203 (264)
Q Consensus 156 ~~V~vev~c~~r~glL~~Il~aLe~lgL~V~~A~Ist~-g~r~~~vF~v 203 (264)
..+.+.+.+.++||+|.+|+++|.+.+..|...+.+.. +|.+.-.|.+
T Consensus 68 r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tV 116 (147)
T PRK04435 68 KIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISI 116 (147)
T ss_pred cEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEE
Confidence 56778899999999999999999999999998886553 4544434444
No 75
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=92.47 E-value=0.65 Score=32.88 Aligned_cols=43 Identities=12% Similarity=0.231 Sum_probs=35.7
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeeeEEEEEecCCeEEEEEEE
Q 024670 159 KASICCEYRPELMSDLRQALDALPLKMLKAEISTLGGRLKNVIVF 203 (264)
Q Consensus 159 ~vev~c~~r~glL~~Il~aLe~lgL~V~~A~Ist~g~r~~~vF~v 203 (264)
++.+..+++||.|.+|+++|.+.|+.|....+...++. .++.+
T Consensus 3 ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~--~~~rl 45 (66)
T cd04908 3 QLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEF--GILRL 45 (66)
T ss_pred EEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCC--CEEEE
Confidence 46778899999999999999999999999887766553 45555
No 76
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.45 E-value=0.76 Score=33.01 Aligned_cols=34 Identities=9% Similarity=0.132 Sum_probs=29.5
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCeeeEEEEEec
Q 024670 160 ASICCEYRPELMSDLRQALDALPLKMLKAEISTL 193 (264)
Q Consensus 160 vev~c~~r~glL~~Il~aLe~lgL~V~~A~Ist~ 193 (264)
+.+.-+++||-|.++++.|.++|..|.+......
T Consensus 2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~ 35 (72)
T cd04884 2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFE 35 (72)
T ss_pred EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccc
Confidence 4567799999999999999999999998876654
No 77
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=92.39 E-value=4.4 Score=35.50 Aligned_cols=74 Identities=9% Similarity=0.111 Sum_probs=47.9
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCeeeEEEEEecCC--eEEEEEEEeecCCCCchhhhhhHHHHHHHHHHHHHhcC
Q 024670 157 LYKASICCEYRPELMSDLRQALDALPLKMLKAEISTLGG--RLKNVIVFTSCKEGNAEASQTLANDVQQALNSVLEKAS 233 (264)
Q Consensus 157 ~V~vev~c~~r~glL~~Il~aLe~lgL~V~~A~Ist~g~--r~~~vF~v~~~~~~~~~~~~~~~~~l~qAL~~vl~~~~ 233 (264)
.+.+++...|+||++.+|.++|.++|+.|.+-+..|.+. .-...|.+.- ...-+ .....+.|+++|...-+...
T Consensus 95 ~~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~~-~v~lP--~~~~~~~L~~~l~~l~~eL~ 170 (190)
T PRK11589 95 TVWVQVEVADSPHLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLHIQI-TAHSP--ASQDAANIEQAFKALCTELN 170 (190)
T ss_pred eEEEEEEECCCCCHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEEEEE-EEEcC--CCCCHHHHHHHHHHHHHHhC
Confidence 366789999999999999999999999998887776653 1112222211 11111 11225677888777655433
No 78
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=92.25 E-value=0.19 Score=52.13 Aligned_cols=43 Identities=19% Similarity=0.122 Sum_probs=40.6
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeeeEEEEEecCCeEEEEEEEe
Q 024670 158 YKASICCEYRPELMSDLRQALDALPLKMLKAEISTLGGRLKNVIVFT 204 (264)
Q Consensus 158 V~vev~c~~r~glL~~Il~aLe~lgL~V~~A~Ist~g~r~~~vF~v~ 204 (264)
..+||...+|+|+|..|+.+|. +|..|+++|.|..+.++|++.
T Consensus 632 ~~~e~r~~dr~g~l~~~~~~l~----~~~~~~~~~~g~~~~~~~~~~ 674 (693)
T PRK00227 632 NILEVRTEDRRGALGALLGVLP----DLLWITASTPGATMIVQAALK 674 (693)
T ss_pred cEEEEEeCccccHHHHHHHHhh----hhhhHhhcCCCcceEEEEEec
Confidence 4679999999999999999999 999999999999999999995
No 79
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.09 E-value=0.72 Score=31.83 Aligned_cols=44 Identities=14% Similarity=0.192 Sum_probs=33.8
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCeeeEEEEEec--CCeEEEEEEE
Q 024670 160 ASICCEYRPELMSDLRQALDALPLKMLKAEISTL--GGRLKNVIVF 203 (264)
Q Consensus 160 vev~c~~r~glL~~Il~aLe~lgL~V~~A~Ist~--g~r~~~vF~v 203 (264)
+.+.+.+++|.|.+|+..|.++++.|........ ++...-.|.+
T Consensus 2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~i~v 47 (71)
T cd04903 2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMVIEV 47 (71)
T ss_pred EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEEEEe
Confidence 4678899999999999999999999998877652 3444333444
No 80
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=91.99 E-value=1.2 Score=30.59 Aligned_cols=34 Identities=9% Similarity=0.013 Sum_probs=28.5
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCeeeEEEEEec
Q 024670 160 ASICCEYRPELMSDLRQALDALPLKMLKAEISTL 193 (264)
Q Consensus 160 vev~c~~r~glL~~Il~aLe~lgL~V~~A~Ist~ 193 (264)
+.+.-+++||.|.++++.|.++|+.|.+......
T Consensus 2 i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~ 35 (65)
T cd04882 2 LAVEVPDKPGGLHEILQILSEEGINIEYMYAFVE 35 (65)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCChhheEEEcc
Confidence 3556789999999999999999999987765444
No 81
>PRK07334 threonine dehydratase; Provisional
Probab=91.98 E-value=1.1 Score=43.14 Aligned_cols=39 Identities=10% Similarity=0.163 Sum_probs=35.5
Q ss_pred ceeEEEEEEcCCCCChHHHHHHHHHhCCCeeeEEEEEec
Q 024670 155 DFLYKASICCEYRPELMSDLRQALDALPLKMLKAEISTL 193 (264)
Q Consensus 155 ~~~V~vev~c~~r~glL~~Il~aLe~lgL~V~~A~Ist~ 193 (264)
.+.+.+.|.+.+|+|+|.+|+++|.+.++.|.+.++.+.
T Consensus 324 ~y~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~ 362 (403)
T PRK07334 324 GRLARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRL 362 (403)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEec
Confidence 467889999999999999999999999999999998764
No 82
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=91.83 E-value=1.9 Score=30.33 Aligned_cols=34 Identities=15% Similarity=0.245 Sum_probs=30.0
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCeeeEEEEEec
Q 024670 160 ASICCEYRPELMSDLRQALDALPLKMLKAEISTL 193 (264)
Q Consensus 160 vev~c~~r~glL~~Il~aLe~lgL~V~~A~Ist~ 193 (264)
+.+.++++||.|.+|++.|.++|+.|........
T Consensus 4 ~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~ 37 (69)
T cd04909 4 LYVDVPDEPGVIAEVTQILGDAGISIKNIEILEI 37 (69)
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEe
Confidence 5678999999999999999999999988876554
No 83
>PRK08577 hypothetical protein; Provisional
Probab=91.80 E-value=1.6 Score=35.67 Aligned_cols=39 Identities=21% Similarity=0.314 Sum_probs=34.1
Q ss_pred eeEEEEEEcCCCCChHHHHHHHHHhCCCeeeEEEEEecC
Q 024670 156 FLYKASICCEYRPELMSDLRQALDALPLKMLKAEISTLG 194 (264)
Q Consensus 156 ~~V~vev~c~~r~glL~~Il~aLe~lgL~V~~A~Ist~g 194 (264)
..+.+.+.+.+++|+|.+|+++|.++++.+...+..+..
T Consensus 55 ~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~ 93 (136)
T PRK08577 55 KLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELK 93 (136)
T ss_pred cEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEec
Confidence 367788999999999999999999999999988876653
No 84
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=91.77 E-value=1.5 Score=33.76 Aligned_cols=47 Identities=2% Similarity=-0.046 Sum_probs=36.8
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeeeEEEEEecCCe-EEEEEEEe
Q 024670 158 YKASICCEYRPELMSDLRQALDALPLKMLKAEISTLGGR-LKNVIVFT 204 (264)
Q Consensus 158 V~vev~c~~r~glL~~Il~aLe~lgL~V~~A~Ist~g~r-~~~vF~v~ 204 (264)
+.+-+..+++||.|.++++.|...|+.+++.+.-...+. -...|+|.
T Consensus 15 tslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVD 62 (90)
T cd04931 15 ISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFIN 62 (90)
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEE
Confidence 344556688999999999999999999999988655333 35677883
No 85
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=91.68 E-value=1.9 Score=30.42 Aligned_cols=45 Identities=9% Similarity=0.113 Sum_probs=33.5
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeeeEEEEEec--CCeEEEEEEE
Q 024670 159 KASICCEYRPELMSDLRQALDALPLKMLKAEISTL--GGRLKNVIVF 203 (264)
Q Consensus 159 ~vev~c~~r~glL~~Il~aLe~lgL~V~~A~Ist~--g~r~~~vF~v 203 (264)
++.+..+++||.|.++++.|.+.|+.|.+....-. ++...-+|.+
T Consensus 3 ~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v 49 (72)
T cd04883 3 QIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRV 49 (72)
T ss_pred EEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEE
Confidence 56778899999999999999999999987754332 3344334444
No 86
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=90.66 E-value=1.5 Score=32.03 Aligned_cols=46 Identities=4% Similarity=0.078 Sum_probs=36.2
Q ss_pred EEcCCCCChHHHHHHHHHhCCCeeeEEEEEecCCe-EEEEEEEeecCC
Q 024670 162 ICCEYRPELMSDLRQALDALPLKMLKAEISTLGGR-LKNVIVFTSCKE 208 (264)
Q Consensus 162 v~c~~r~glL~~Il~aLe~lgL~V~~A~Ist~g~r-~~~vF~v~~~~~ 208 (264)
+..+++||-|+++++.|...|+.+++.+.-...+. ....|++ .+.+
T Consensus 5 f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffv-d~~~ 51 (74)
T cd04904 5 FSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFV-DCEV 51 (74)
T ss_pred EEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEE-EEEc
Confidence 45578999999999999999999999998655543 3567777 4443
No 87
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=90.53 E-value=1.3 Score=46.13 Aligned_cols=65 Identities=12% Similarity=0.065 Sum_probs=52.7
Q ss_pred EEEE-cCCCCChHHHHHHHHHhCCCeeeEEEEEecCCeEEEEEEEeecCCCCchhhhhhHHHHHHHHHHHHH
Q 024670 160 ASIC-CEYRPELMSDLRQALDALPLKMLKAEISTLGGRLKNVIVFTSCKEGNAEASQTLANDVQQALNSVLE 230 (264)
Q Consensus 160 vev~-c~~r~glL~~Il~aLe~lgL~V~~A~Ist~g~r~~~vF~v~~~~~~~~~~~~~~~~~l~qAL~~vl~ 230 (264)
++|. +++++|+|++++.+|.-+++.|.+|.+.+ +|.....|.|..-.+... ....++|+++..+.
T Consensus 549 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~-~~~~~~~~~v~~~~~~~~-----~~~~~~~~~~~~~~ 614 (693)
T PRK00227 549 FTVIWHGDYPRELVRVLALIAAKGWNILSARMVA-NGPWSAEFDVRANGPQDF-----DPQEFLQAYKSGVY 614 (693)
T ss_pred EEEEecCCcccHHHHHHHHHHhcCceeeEeEEec-CCceEEEEEEecCCCCCC-----ChHHHHHHHHHhhc
Confidence 3444 49999999999999999999999999999 888889999976444432 34678888887764
No 88
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=89.63 E-value=0.79 Score=35.62 Aligned_cols=68 Identities=7% Similarity=0.107 Sum_probs=49.5
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCeeeEEEEEecCCeEEEEEEEeecCCCCchhhhhhHHHHHHHHHHHHH
Q 024670 157 LYKASICCEYRPELMSDLRQALDALPLKMLKAEISTLGGRLKNVIVFTSCKEGNAEASQTLANDVQQALNSVLE 230 (264)
Q Consensus 157 ~V~vev~c~~r~glL~~Il~aLe~lgL~V~~A~Ist~g~r~~~vF~v~~~~~~~~~~~~~~~~~l~qAL~~vl~ 230 (264)
.+.|++...||||+.+.|..+|.++|+.|++.+=+-..|++.=.+++ .+... ......++..|.....
T Consensus 3 ~avITV~GkDr~GIva~is~vLAe~~vNIldisQtvm~~~ftm~~lV-~~~~~-----~~d~~~lr~~l~~~~~ 70 (90)
T COG3830 3 RAVITVIGKDRVGIVAAVSRVLAEHGVNILDISQTVMDGFFTMIMLV-DISKE-----VVDFAALRDELAAEGK 70 (90)
T ss_pred eEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHHHHhhhceeeeEE-cCChH-----hccHHHHHHHHHHHHH
Confidence 35678999999999999999999999999999888888877655566 33211 2233455555555443
No 89
>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription]
Probab=89.09 E-value=0.29 Score=50.31 Aligned_cols=43 Identities=30% Similarity=0.441 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHhHHHHHccCCC----CCCCChhhHHHHHHHHHHHHH
Q 024670 80 AERRRRERINAHLDTLRGLVPP----NGKMDKATLLAEVIRQVKELK 122 (264)
Q Consensus 80 ~ER~RR~~in~~~~~Lr~lvP~----~~k~dkasiL~~ai~yik~Lq 122 (264)
+-|-||-|=|+-|.+|..+||- ...+|||+|+.-||.|++-=+
T Consensus 53 AARsRRsKEn~~FyeLa~~lPlp~aisshLDkaSimRLtISyLRlrk 99 (768)
T KOG3558|consen 53 AARSRRSKENEEFYELAKLLPLPAAISSHLDKASIMRLTISYLRLRK 99 (768)
T ss_pred hhhhhcccchHHHHHHHHhCCCcchhhhhhhhHHHHHHHHHHHHHHH
Confidence 6789999999999999999993 367899999999999997543
No 90
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=88.97 E-value=2.8 Score=35.64 Aligned_cols=63 Identities=13% Similarity=0.238 Sum_probs=47.5
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCeeeEEEEEecC--CeEEEEEEEeecCCCCchhhhhhHHHHHHHHHHHHH
Q 024670 160 ASICCEYRPELMSDLRQALDALPLKMLKAEISTLG--GRLKNVIVFTSCKEGNAEASQTLANDVQQALNSVLE 230 (264)
Q Consensus 160 vev~c~~r~glL~~Il~aLe~lgL~V~~A~Ist~g--~r~~~vF~v~~~~~~~~~~~~~~~~~l~qAL~~vl~ 230 (264)
+.+.-+++||.|.+|...|...|+.|.+..+...+ +...-+|++.. +....+.|...|.+.++
T Consensus 4 isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~--------d~~~i~qi~kQl~Kli~ 68 (157)
T TIGR00119 4 LSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVG--------DDKVLEQITKQLNKLVD 68 (157)
T ss_pred EEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEEC--------CHHHHHHHHHHHhcCcc
Confidence 56788999999999999999999999999887654 44554555522 12345788888888765
No 91
>KOG3559 consensus Transcriptional regulator SIM1 [Transcription]
Probab=88.22 E-value=0.48 Score=46.15 Aligned_cols=43 Identities=30% Similarity=0.403 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHhHHHHHccCCCC----CCCChhhHHHHHHHHHHHHH
Q 024670 80 AERRRRERINAHLDTLRGLVPPN----GKMDKATLLAEVIRQVKELK 122 (264)
Q Consensus 80 ~ER~RR~~in~~~~~Lr~lvP~~----~k~dkasiL~~ai~yik~Lq 122 (264)
+-|.||++-|-.|.+|..++|-. ...||++|+.-|-.|||.-.
T Consensus 8 aA~tRRekEN~EF~eLAklLPLa~AItsQlDKasiiRLtTsYlKmr~ 54 (598)
T KOG3559|consen 8 AARTRREKENYEFYELAKLLPLASAITSQLDKASIIRLTTSYLKMRN 54 (598)
T ss_pred HHHHHHHhhcchHHHHHhhccchhhhhhccchhhhhhHHHHHHHHHH
Confidence 57899999999999999999953 56899999999999998644
No 92
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=88.15 E-value=3.7 Score=35.09 Aligned_cols=64 Identities=14% Similarity=0.267 Sum_probs=47.3
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeeeEEEEEecC--CeEEEEEEEeecCCCCchhhhhhHHHHHHHHHHHHH
Q 024670 159 KASICCEYRPELMSDLRQALDALPLKMLKAEISTLG--GRLKNVIVFTSCKEGNAEASQTLANDVQQALNSVLE 230 (264)
Q Consensus 159 ~vev~c~~r~glL~~Il~aLe~lgL~V~~A~Ist~g--~r~~~vF~v~~~~~~~~~~~~~~~~~l~qAL~~vl~ 230 (264)
.+.+.-+++||.|.+|...|...|+.|.+..+.... +...-+|++.. +....+.|...|.++++
T Consensus 4 ~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~~--------~~~~i~qi~kQl~KLid 69 (161)
T PRK11895 4 TLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSG--------DEQVIEQITKQLNKLID 69 (161)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEEC--------CHHHHHHHHHHHhcccc
Confidence 357788999999999999999999999998886544 45554555521 12345677888888765
No 93
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=87.97 E-value=4.4 Score=35.07 Aligned_cols=67 Identities=7% Similarity=0.128 Sum_probs=48.8
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeeeEEEEEe--cCCeEEEEEEEeecCCCCchhhhhhHHHHHHHHHHHHHhcC
Q 024670 159 KASICCEYRPELMSDLRQALDALPLKMLKAEIST--LGGRLKNVIVFTSCKEGNAEASQTLANDVQQALNSVLEKAS 233 (264)
Q Consensus 159 ~vev~c~~r~glL~~Il~aLe~lgL~V~~A~Ist--~g~r~~~vF~v~~~~~~~~~~~~~~~~~l~qAL~~vl~~~~ 233 (264)
.+.+...++||+|.+|...|...|+.|.+-.+.. ..+...-++++.. +....+.|+++|.+.++-..
T Consensus 4 ~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~~--------~~~~ieqL~kQL~KLidVl~ 72 (174)
T CHL00100 4 TLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVPG--------DDRTIEQLTKQLYKLVNILK 72 (174)
T ss_pred EEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEEC--------CHHHHHHHHHHHHHHhHhhE
Confidence 3577889999999999999999999999988865 4444444444421 11225788999988876433
No 94
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=87.72 E-value=3.7 Score=29.26 Aligned_cols=60 Identities=15% Similarity=0.268 Sum_probs=38.6
Q ss_pred EEEcCCCCChHHHHHHHHHhCCCeeeEEEEEecCCeEEEEEEEeecCCCCchhhhhhHHHHHHHHHH
Q 024670 161 SICCEYRPELMSDLRQALDALPLKMLKAEISTLGGRLKNVIVFTSCKEGNAEASQTLANDVQQALNS 227 (264)
Q Consensus 161 ev~c~~r~glL~~Il~aLe~lgL~V~~A~Ist~g~r~~~vF~v~~~~~~~~~~~~~~~~~l~qAL~~ 227 (264)
.+.-+++||-|.++++.+.. +..|+..+....+-....+++...... ....+.|.++|.+
T Consensus 2 ~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie~~~------~~~~~~i~~~L~~ 61 (68)
T cd04885 2 AVTFPERPGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQVPD------REDLAELKERLEA 61 (68)
T ss_pred EEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEEeCC------HHHHHHHHHHHHH
Confidence 45679999999999999999 999988776554322233444433321 1234566666654
No 95
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=86.98 E-value=4.1 Score=30.10 Aligned_cols=45 Identities=9% Similarity=0.113 Sum_probs=35.2
Q ss_pred EEcCCCCChHHHHHHHHHhCCCeeeEEEEEecC-CeEEEEEEEeecC
Q 024670 162 ICCEYRPELMSDLRQALDALPLKMLKAEISTLG-GRLKNVIVFTSCK 207 (264)
Q Consensus 162 v~c~~r~glL~~Il~aLe~lgL~V~~A~Ist~g-~r~~~vF~v~~~~ 207 (264)
+..+++||-|++++..|...|+.+.+-+.-... ....+.|++ .|.
T Consensus 5 ~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~i-d~e 50 (74)
T cd04929 5 FSLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFV-DCE 50 (74)
T ss_pred EEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEE-EEE
Confidence 455789999999999999999999999876543 334577787 443
No 96
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=86.59 E-value=2.6 Score=29.64 Aligned_cols=43 Identities=14% Similarity=0.253 Sum_probs=34.3
Q ss_pred EEEcCCCCChHHHHHHHHHhCCCeeeEEEEEe--cCCeEEEEEEE
Q 024670 161 SICCEYRPELMSDLRQALDALPLKMLKAEIST--LGGRLKNVIVF 203 (264)
Q Consensus 161 ev~c~~r~glL~~Il~aLe~lgL~V~~A~Ist--~g~r~~~vF~v 203 (264)
-+..+++||.+.+|.+.|.++|+.|....... .++...-+|.+
T Consensus 3 ~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v 47 (73)
T cd04902 3 VVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSV 47 (73)
T ss_pred EEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEe
Confidence 35789999999999999999999998877654 45666655555
No 97
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=86.47 E-value=0.81 Score=32.04 Aligned_cols=43 Identities=14% Similarity=0.096 Sum_probs=32.7
Q ss_pred EEEcCCCCChHHHHHHHHHhCCCeeeEEEEEecCCeEEEEEEE
Q 024670 161 SICCEYRPELMSDLRQALDALPLKMLKAEISTLGGRLKNVIVF 203 (264)
Q Consensus 161 ev~c~~r~glL~~Il~aLe~lgL~V~~A~Ist~g~r~~~vF~v 203 (264)
-+.+.++||+|.+|++.|.+.+..|......+.++...-.|.+
T Consensus 3 ~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~a~~~~~~ 45 (69)
T cd04901 3 LHIHKNVPGVLGQINTILAEHNINIAAQYLQTRGEIGYVVIDI 45 (69)
T ss_pred EEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCCCEEEEEEEc
Confidence 4578999999999999999999999777665544554433333
No 98
>KOG3898 consensus Transcription factor NeuroD and related HTH proteins [Transcription]
Probab=86.24 E-value=0.94 Score=41.46 Aligned_cols=52 Identities=25% Similarity=0.314 Sum_probs=44.3
Q ss_pred HhhhccHHHHHHHHHHHHhHHHHHccCCC---CCCCChhhHHHHHHHHHHHHHHH
Q 024670 73 ALKNHSEAERRRRERINAHLDTLRGLVPP---NGKMDKATLLAEVIRQVKELKTN 124 (264)
Q Consensus 73 ~~~~h~~~ER~RR~~in~~~~~Lr~lvP~---~~k~dkasiL~~ai~yik~Lq~~ 124 (264)
.+..=+..||+|--.+|+-|..||.++|. ..|+.|.-.|.-|-.||..|++-
T Consensus 72 rR~kaNaRER~RMH~LNdAld~LReviP~~~~~~klskIetl~~a~~yi~als~~ 126 (254)
T KOG3898|consen 72 RRLKANARERTRMHDLNDALDALREVIPHGLHPPKLSKIETLRLAANYIAALSEV 126 (254)
T ss_pred hcccccchhhccccchhHHHHHhHhhccCcCCCCCCCcchhHHhhhcchhhhccc
Confidence 34555779999999999999999999994 47788888999999999988763
No 99
>KOG4395 consensus Transcription factor Atonal, contains HTH domain [Transcription]
Probab=84.83 E-value=1.8 Score=39.69 Aligned_cols=54 Identities=26% Similarity=0.237 Sum_probs=45.1
Q ss_pred HhhhccHHHHHHHHHHHHhHHHHHccCCCC---CCCChhhHHHHHHHHHHHHHHHHH
Q 024670 73 ALKNHSEAERRRRERINAHLDTLRGLVPPN---GKMDKATLLAEVIRQVKELKTNAI 126 (264)
Q Consensus 73 ~~~~h~~~ER~RR~~in~~~~~Lr~lvP~~---~k~dkasiL~~ai~yik~Lq~~~~ 126 (264)
.+..-+..||+|-..+|.-|..||..||.. .|+.|---|..|-.||--|-..+.
T Consensus 174 rr~aanarErrrm~gLN~AfD~Lr~v~p~~~~d~~LSkyetLqmaq~yi~~l~~~l~ 230 (285)
T KOG4395|consen 174 RRLAANARERRRMNGLNSAFDRLRLVVPDGDSDKKLSKYETLQMAQGYILALGCLLD 230 (285)
T ss_pred hhcccchHHHHHhhhHHHHHHHHHHhcCCCCccchhhhhhHHHHHHHHHhhhHHhhc
Confidence 345667899999999999999999999965 566778889999999988876554
No 100
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=84.23 E-value=5.7 Score=41.74 Aligned_cols=49 Identities=10% Similarity=0.105 Sum_probs=40.5
Q ss_pred ceeEEEEEEcCCCCChHHHHHHHHHhCCCeeeEEEEEec--CCeEEEEEEE
Q 024670 155 DFLYKASICCEYRPELMSDLRQALDALPLKMLKAEISTL--GGRLKNVIVF 203 (264)
Q Consensus 155 ~~~V~vev~c~~r~glL~~Il~aLe~lgL~V~~A~Ist~--g~r~~~vF~v 203 (264)
.+.+.|.|.+.+|+|+|.+|..++.+.++.|..+++.+. ++.+.-.|.+
T Consensus 664 ~~~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~i 714 (743)
T PRK10872 664 GYSLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTI 714 (743)
T ss_pred eeEEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEE
Confidence 477889999999999999999999999999999998765 3554434444
No 101
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=84.13 E-value=6.6 Score=29.46 Aligned_cols=34 Identities=6% Similarity=0.102 Sum_probs=30.0
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeeeEEEEEe
Q 024670 159 KASICCEYRPELMSDLRQALDALPLKMLKAEIST 192 (264)
Q Consensus 159 ~vev~c~~r~glL~~Il~aLe~lgL~V~~A~Ist 192 (264)
.+.+...++||.|.+|+..|..-|..|.+-.+..
T Consensus 4 tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~ 37 (76)
T PRK06737 4 TFSLVIHNDPSVLLRISGIFARRGYYISSLNLNE 37 (76)
T ss_pred EEEEEEecCCCHHHHHHHHHhccCcceEEEEecc
Confidence 3577889999999999999999999999888763
No 102
>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=82.11 E-value=3.3 Score=31.16 Aligned_cols=44 Identities=27% Similarity=0.383 Sum_probs=35.0
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCeeeEEEEE--ecCCeEEEEEEE
Q 024670 160 ASICCEYRPELMSDLRQALDALPLKMLKAEIS--TLGGRLKNVIVF 203 (264)
Q Consensus 160 vev~c~~r~glL~~Il~aLe~lgL~V~~A~Is--t~g~r~~~vF~v 203 (264)
|+++..-||-.++|+.-||..|++.|-+|+|. ..+++--.|+.+
T Consensus 3 VElsGkGRPrVfyDvTlALK~L~i~IFsaeIgR~~~~~r~wEvyR~ 48 (77)
T cd04898 3 VELSGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEVYRV 48 (77)
T ss_pred ccccCCCCcceeeehHHHHHHhccEEEehhhhhhhcCCeeEEEEEE
Confidence 46777889999999999999999999999996 345565444433
No 103
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=81.76 E-value=6.8 Score=27.92 Aligned_cols=56 Identities=11% Similarity=0.182 Sum_probs=37.6
Q ss_pred CCCChHHHHHHHHHhCCCeeeEEEEEe--cCCeEEEEEEEeecCCCCchhhhhhHHHHHHHHHHHH
Q 024670 166 YRPELMSDLRQALDALPLKMLKAEIST--LGGRLKNVIVFTSCKEGNAEASQTLANDVQQALNSVL 229 (264)
Q Consensus 166 ~r~glL~~Il~aLe~lgL~V~~A~Ist--~g~r~~~vF~v~~~~~~~~~~~~~~~~~l~qAL~~vl 229 (264)
++||.|.+|+..|..-|+.|.+-++.. .++...-++.+ .+. . ...+.|.+.|.+++
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v-~~~-~------~~i~~l~~Ql~Kli 58 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVV-SGD-D------REIEQLVKQLEKLI 58 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEE-ES--C------CHHHHHHHHHHCST
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEE-eeC-c------hhHHHHHHHHhccC
Confidence 579999999999999999999998877 56655544444 221 1 22455666665543
No 104
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=81.68 E-value=9 Score=32.08 Aligned_cols=67 Identities=16% Similarity=0.249 Sum_probs=50.0
Q ss_pred eeEEEEEEcCCCCChHHHHHHHHHhCCCeeeEEEEE-ecCCeEEEEEEEeecCCCCchhhhhhHHHHHHHHHHH
Q 024670 156 FLYKASICCEYRPELMSDLRQALDALPLKMLKAEIS-TLGGRLKNVIVFTSCKEGNAEASQTLANDVQQALNSV 228 (264)
Q Consensus 156 ~~V~vev~c~~r~glL~~Il~aLe~lgL~V~~A~Is-t~g~r~~~vF~v~~~~~~~~~~~~~~~~~l~qAL~~v 228 (264)
..+.+.+.-++|.|.|+++++++...++.|+..+=+ ..+|++.-++.+..... +..++.|-.+|+++
T Consensus 71 ri~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~ipl~g~Anvtlsi~~ssm------~~~V~~ii~kl~k~ 138 (150)
T COG4492 71 RIITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTIPLQGRANVTLSIDTSSM------EKDVDKIIEKLRKV 138 (150)
T ss_pred eEEEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEecccccCceeeEEEEEEchhh------hhhHHHHHHHHhcc
Confidence 456778888999999999999999999999988754 67888865555533321 23456777777654
No 105
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=81.16 E-value=8.5 Score=40.21 Aligned_cols=43 Identities=12% Similarity=0.218 Sum_probs=38.2
Q ss_pred ceeEEEEEEcCCCCChHHHHHHHHHhCCCeeeEEEEEecCCeE
Q 024670 155 DFLYKASICCEYRPELMSDLRQALDALPLKMLKAEISTLGGRL 197 (264)
Q Consensus 155 ~~~V~vev~c~~r~glL~~Il~aLe~lgL~V~~A~Ist~g~r~ 197 (264)
.+.+.|.+.+.+++|+|.+|+.++.+.++.|.++++.+.++.+
T Consensus 624 ~~~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~ 666 (702)
T PRK11092 624 EFIAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKDGRV 666 (702)
T ss_pred eeEEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCCE
Confidence 4778899999999999999999999999999999987775433
No 106
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=81.00 E-value=10 Score=30.49 Aligned_cols=45 Identities=7% Similarity=-0.012 Sum_probs=35.2
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeeeEEEEEecCCe-EEEEEEE
Q 024670 159 KASICCEYRPELMSDLRQALDALPLKMLKAEISTLGGR-LKNVIVF 203 (264)
Q Consensus 159 ~vev~c~~r~glL~~Il~aLe~lgL~V~~A~Ist~g~r-~~~vF~v 203 (264)
-+-+..+++||-|.++++.|...|+.+++.+.-...+. ..+.|+|
T Consensus 43 Slifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfI 88 (115)
T cd04930 43 TLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLV 88 (115)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEE
Confidence 34445588999999999999999999999998665333 3466777
No 107
>PRK11899 prephenate dehydratase; Provisional
Probab=79.46 E-value=13 Score=34.39 Aligned_cols=48 Identities=10% Similarity=-0.015 Sum_probs=38.0
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeeeEEEEEecC-CeEEEEEEEee
Q 024670 158 YKASICCEYRPELMSDLRQALDALPLKMLKAEISTLG-GRLKNVIVFTS 205 (264)
Q Consensus 158 V~vev~c~~r~glL~~Il~aLe~lgL~V~~A~Ist~g-~r~~~vF~v~~ 205 (264)
..+-+..+++||.|.+++++|...|+.+++-+.-... ....++|++.-
T Consensus 195 tsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~id~ 243 (279)
T PRK11899 195 TTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYADI 243 (279)
T ss_pred EEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEEEE
Confidence 3344455799999999999999999999999987654 44578888843
No 108
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=78.41 E-value=11 Score=28.82 Aligned_cols=64 Identities=8% Similarity=0.025 Sum_probs=44.1
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCeeeEEEEEecCC--eEEEEEEEeecCCCCchhhhhhHHHHHHHHHHHHH
Q 024670 160 ASICCEYRPELMSDLRQALDALPLKMLKAEISTLGG--RLKNVIVFTSCKEGNAEASQTLANDVQQALNSVLE 230 (264)
Q Consensus 160 vev~c~~r~glL~~Il~aLe~lgL~V~~A~Ist~g~--r~~~vF~v~~~~~~~~~~~~~~~~~l~qAL~~vl~ 230 (264)
+.+.-+++||.|.+|...|...|..|.+-.++.... ..+-++++ .. + +....+.|.+.|.+.++
T Consensus 5 isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv-~~--~----d~~~ieqI~kQL~Klid 70 (84)
T PRK13562 5 LKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQV-DI--Q----DDTSLHILIKKLKQQIN 70 (84)
T ss_pred EEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEE-eC--C----CHHHHHHHHHHHhCCcc
Confidence 567889999999999999999999998888865443 22323333 11 1 22345677777777654
No 109
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=78.34 E-value=12 Score=39.01 Aligned_cols=40 Identities=23% Similarity=0.314 Sum_probs=37.0
Q ss_pred ceeEEEEEEcCCCCChHHHHHHHHHhCCCeeeEEEEEecC
Q 024670 155 DFLYKASICCEYRPELMSDLRQALDALPLKMLKAEISTLG 194 (264)
Q Consensus 155 ~~~V~vev~c~~r~glL~~Il~aLe~lgL~V~~A~Ist~g 194 (264)
.+.+.|.|.+.+++|+|.+|++++.+.+..|.+.++.+..
T Consensus 608 ~f~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~ 647 (683)
T TIGR00691 608 RFIVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYG 647 (683)
T ss_pred eeEEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcC
Confidence 4778899999999999999999999999999999998774
No 110
>PRK06382 threonine dehydratase; Provisional
Probab=76.44 E-value=19 Score=34.84 Aligned_cols=36 Identities=17% Similarity=0.165 Sum_probs=32.3
Q ss_pred eeEEEEEEcCCCCChHHHHHHHHHhCCCeeeEEEEE
Q 024670 156 FLYKASICCEYRPELMSDLRQALDALPLKMLKAEIS 191 (264)
Q Consensus 156 ~~V~vev~c~~r~glL~~Il~aLe~lgL~V~~A~Is 191 (264)
..+++.+.-+|+||.|.+|++.|.+++.+|++....
T Consensus 329 ~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~ 364 (406)
T PRK06382 329 QLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVD 364 (406)
T ss_pred CEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEe
Confidence 467888999999999999999999999999887764
No 111
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=76.01 E-value=17 Score=27.22 Aligned_cols=62 Identities=10% Similarity=0.227 Sum_probs=43.2
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeeeEEEEEe--cCCeEEEEEEEeecCCCCchhhhhhHHHHHHHHHHHH
Q 024670 159 KASICCEYRPELMSDLRQALDALPLKMLKAEIST--LGGRLKNVIVFTSCKEGNAEASQTLANDVQQALNSVL 229 (264)
Q Consensus 159 ~vev~c~~r~glL~~Il~aLe~lgL~V~~A~Ist--~g~r~~~vF~v~~~~~~~~~~~~~~~~~l~qAL~~vl 229 (264)
.+.+.-.++||.|.+|+..|+.-|..|.+-.+.. .++...=++.+ . .+ ...+.|...|.+.+
T Consensus 5 ~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v-~--~~------~~i~ql~kQL~KL~ 68 (76)
T PRK11152 5 QLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTV-A--SE------RPIDLLSSQLNKLV 68 (76)
T ss_pred EEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEE-C--CC------chHHHHHHHHhcCc
Confidence 3567778999999999999999999999888865 34444433444 2 11 23456666666654
No 112
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=74.09 E-value=33 Score=25.46 Aligned_cols=30 Identities=10% Similarity=0.216 Sum_probs=23.1
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCeeeEEEEE
Q 024670 160 ASICCEYRPELMSDLRQALDALPLKMLKAEIS 191 (264)
Q Consensus 160 vev~c~~r~glL~~Il~aLe~lgL~V~~A~Is 191 (264)
+.+.-+++||-|.+++++|. +..|......
T Consensus 4 l~v~ipD~PG~L~~ll~~l~--~anI~~~~y~ 33 (85)
T cd04906 4 LAVTIPERPGSFKKFCELIG--PRNITEFNYR 33 (85)
T ss_pred EEEecCCCCcHHHHHHHHhC--CCceeEEEEE
Confidence 56788999999999999999 5555554443
No 113
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=72.30 E-value=66 Score=36.79 Aligned_cols=73 Identities=15% Similarity=0.147 Sum_probs=47.7
Q ss_pred eeEEEEEEcCCCCChHHHHHHHHHhCCCeeeEEE---EEecCC--eEEEEEEEeecCCCCchhhhhhHHHHHHHHHHHH
Q 024670 156 FLYKASICCEYRPELMSDLRQALDALPLKMLKAE---ISTLGG--RLKNVIVFTSCKEGNAEASQTLANDVQQALNSVL 229 (264)
Q Consensus 156 ~~V~vev~c~~r~glL~~Il~aLe~lgL~V~~A~---Ist~g~--r~~~vF~v~~~~~~~~~~~~~~~~~l~qAL~~vl 229 (264)
..+.+++.....+..|++|+-.|+++||.|+... |...++ ...+-|.+....+.. .+.....+.+.++|..+.
T Consensus 488 ~~~~lkiy~~~~~~~Ls~vlPilenlGl~V~~e~~~~i~~~~~~~~~i~~F~l~~~~~~~-~~~~~~~~~~~~a~~~v~ 565 (1528)
T PF05088_consen 488 GRLRLKIYHPGEPLPLSDVLPILENLGLRVIDERPYEIRRADGRRVWIHDFGLQYPDGDA-LDLDDIRERFEEAFEAVW 565 (1528)
T ss_pred CeEEEEEEcCCCCcCHHHHHHHHHhCCCEEEEEecceeecCCCceEEEEEEEEecCCCcc-ccHHHHHHHHHHHHHHHh
Confidence 4577788888889999999999999999999876 444322 346777775544332 112223344445554443
No 114
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=70.69 E-value=21 Score=37.32 Aligned_cols=50 Identities=14% Similarity=0.144 Sum_probs=42.9
Q ss_pred CceeEEEEEEcCCCCChHHHHHHHHHhCCCeeeEEEEEecCCeEEEEEEE
Q 024670 154 ADFLYKASICCEYRPELMSDLRQALDALPLKMLKAEISTLGGRLKNVIVF 203 (264)
Q Consensus 154 ~~~~V~vev~c~~r~glL~~Il~aLe~lgL~V~~A~Ist~g~r~~~vF~v 203 (264)
..+.+.|.|...+|+|+|.+|+++|.+.+..|...++.+.++++..+.+.
T Consensus 624 ~~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~~~~~~~~~~~ 673 (701)
T COG0317 624 QVYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSDKDQFATMQFT 673 (701)
T ss_pred cceEEEEEEEEccccchHHHHHHHHHhCCCceEEeeccccCCceEEEEEE
Confidence 35888999999999999999999999999999999998876666554444
No 115
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=70.20 E-value=38 Score=32.20 Aligned_cols=36 Identities=11% Similarity=0.134 Sum_probs=31.8
Q ss_pred eeEEEEEEcCCCCChHHHHHHHHHhCCCeeeEEEEE
Q 024670 156 FLYKASICCEYRPELMSDLRQALDALPLKMLKAEIS 191 (264)
Q Consensus 156 ~~V~vev~c~~r~glL~~Il~aLe~lgL~V~~A~Is 191 (264)
..+++.+.-+|+||.|.++++.+.+.+.+|++....
T Consensus 304 r~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~ 339 (380)
T TIGR01127 304 RKVRIETVLPDRPGALYHLLESIAEARANIVKIDHD 339 (380)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEee
Confidence 466788899999999999999999999999887654
No 116
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=69.71 E-value=22 Score=27.98 Aligned_cols=64 Identities=5% Similarity=0.068 Sum_probs=43.1
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeeeEEEEEecCC--eEEEEEEEeecCCCCchhhhhhHHHHHHHHHHHHH
Q 024670 158 YKASICCEYRPELMSDLRQALDALPLKMLKAEISTLGG--RLKNVIVFTSCKEGNAEASQTLANDVQQALNSVLE 230 (264)
Q Consensus 158 V~vev~c~~r~glL~~Il~aLe~lgL~V~~A~Ist~g~--r~~~vF~v~~~~~~~~~~~~~~~~~l~qAL~~vl~ 230 (264)
..+.+..+++||+|.+|...|..-|..|.+-.+...+. ..+-++++ + +. ...+.|.+.|.++++
T Consensus 9 ~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv--~-~~------~~i~Qi~kQL~KLid 74 (96)
T PRK08178 9 VILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLV--N-DD------QRLEQMISQIEKLED 74 (96)
T ss_pred EEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEE--c-Cc------hHHHHHHHHHhCCcC
Confidence 34678889999999999999999999888877754433 23323333 2 11 234666777776654
No 117
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=68.33 E-value=35 Score=31.80 Aligned_cols=65 Identities=12% Similarity=0.089 Sum_probs=45.9
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCeeeEEEEEecC-CeEEEEEEEeecCCCCchhhhhhHHHHHHHHHHH
Q 024670 157 LYKASICCEYRPELMSDLRQALDALPLKMLKAEISTLG-GRLKNVIVFTSCKEGNAEASQTLANDVQQALNSV 228 (264)
Q Consensus 157 ~V~vev~c~~r~glL~~Il~aLe~lgL~V~~A~Ist~g-~r~~~vF~v~~~~~~~~~~~~~~~~~l~qAL~~v 228 (264)
...+-+.-+++||.|++++..|...|++...-+.-... +...++|++ ++.+... -..+++||.++
T Consensus 194 kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~i-D~eg~~~------~~~v~~AL~el 259 (279)
T COG0077 194 KTSLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFI-DIEGHID------DPLVKEALEEL 259 (279)
T ss_pred eEEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEE-EEecCcC------cHhHHHHHHHH
Confidence 34444566799999999999999999999999986554 444678888 4433321 13566666664
No 118
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=65.75 E-value=42 Score=23.28 Aligned_cols=31 Identities=19% Similarity=0.279 Sum_probs=24.6
Q ss_pred EEEEcC---CCCChHHHHHHHHHhCCCeeeEEEEEe
Q 024670 160 ASICCE---YRPELMSDLRQALDALPLKMLKAEIST 192 (264)
Q Consensus 160 vev~c~---~r~glL~~Il~aLe~lgL~V~~A~Ist 192 (264)
|.+.+. ..+|++.+++++|.+.++.|. .+++
T Consensus 4 isvvG~~~~~~~gi~~~if~aL~~~~I~v~--~~~~ 37 (64)
T cd04937 4 VTIIGSRIRGVPGVMAKIVGALSKEGIEIL--QTAD 37 (64)
T ss_pred EEEECCCccCCcCHHHHHHHHHHHCCCCEE--EEEc
Confidence 455554 579999999999999999996 4444
No 119
>PRK08198 threonine dehydratase; Provisional
Probab=65.59 E-value=53 Score=31.48 Aligned_cols=36 Identities=14% Similarity=0.193 Sum_probs=32.0
Q ss_pred eeEEEEEEcCCCCChHHHHHHHHHhCCCeeeEEEEE
Q 024670 156 FLYKASICCEYRPELMSDLRQALDALPLKMLKAEIS 191 (264)
Q Consensus 156 ~~V~vev~c~~r~glL~~Il~aLe~lgL~V~~A~Is 191 (264)
..+++.+.-+|+||.|.++++.+.+.|..|......
T Consensus 326 r~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~ 361 (404)
T PRK08198 326 RYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHD 361 (404)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEE
Confidence 467788899999999999999999999998887765
No 120
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=64.60 E-value=41 Score=22.77 Aligned_cols=33 Identities=9% Similarity=0.128 Sum_probs=25.7
Q ss_pred EEEEcC---CCCChHHHHHHHHHhCCCeeeEEEEEe
Q 024670 160 ASICCE---YRPELMSDLRQALDALPLKMLKAEIST 192 (264)
Q Consensus 160 vev~c~---~r~glL~~Il~aLe~lgL~V~~A~Ist 192 (264)
|.+.+. +.++++.+|+++|.+.|+.|.-...++
T Consensus 4 isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~~~~ 39 (66)
T cd04922 4 LALVGDGMAGTPGVAATFFSALAKANVNIRAIAQGS 39 (66)
T ss_pred EEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 445553 578999999999999999997665444
No 121
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=64.32 E-value=9.8 Score=38.09 Aligned_cols=36 Identities=25% Similarity=0.399 Sum_probs=33.5
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeeeEEEEEecC
Q 024670 159 KASICCEYRPELMSDLRQALDALPLKMLKAEISTLG 194 (264)
Q Consensus 159 ~vev~c~~r~glL~~Il~aLe~lgL~V~~A~Ist~g 194 (264)
+++|.|.||-|+-.+|++.|...++++...+|...+
T Consensus 2 rl~~~~~dr~g~~~~~l~~~~~~~~~~~~~e~~~~~ 37 (520)
T PRK10820 2 RLEVFCEDRLGLTRELLDLLVLRSIDLRGIEIDPIG 37 (520)
T ss_pred eEEEEeeccccHHHHHHHHHHhcCCCccEEEEcCCC
Confidence 679999999999999999999999999999997764
No 122
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=62.97 E-value=50 Score=23.32 Aligned_cols=33 Identities=15% Similarity=0.166 Sum_probs=26.7
Q ss_pred eEEEEEEcC----CCCChHHHHHHHHHhCCCeeeEEE
Q 024670 157 LYKASICCE----YRPELMSDLRQALDALPLKMLKAE 189 (264)
Q Consensus 157 ~V~vev~c~----~r~glL~~Il~aLe~lgL~V~~A~ 189 (264)
+..|++.++ +.+|++.+++.+|.+.|+.|.-..
T Consensus 6 ~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is 42 (65)
T PF13840_consen 6 WAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS 42 (65)
T ss_dssp EEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE
T ss_pred EEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE
Confidence 455666776 589999999999999999997776
No 123
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=59.27 E-value=63 Score=31.34 Aligned_cols=44 Identities=11% Similarity=0.104 Sum_probs=35.7
Q ss_pred EEcCCCCChHHHHHHHHHhCCCeeeEEEEEecC-CeEEEEEEEee
Q 024670 162 ICCEYRPELMSDLRQALDALPLKMLKAEISTLG-GRLKNVIVFTS 205 (264)
Q Consensus 162 v~c~~r~glL~~Il~aLe~lgL~V~~A~Ist~g-~r~~~vF~v~~ 205 (264)
+.-+++||.|.++++.|...|+.+++-+.-... ....++|++.-
T Consensus 302 ~~~~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffid~ 346 (386)
T PRK10622 302 MATGQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYLDV 346 (386)
T ss_pred EEcCCCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEEEE
Confidence 444799999999999999999999999987444 44578888833
No 124
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=58.83 E-value=49 Score=21.69 Aligned_cols=33 Identities=12% Similarity=0.183 Sum_probs=25.3
Q ss_pred EEEEcC---CCCChHHHHHHHHHhCCCeeeEEEEEe
Q 024670 160 ASICCE---YRPELMSDLRQALDALPLKMLKAEIST 192 (264)
Q Consensus 160 vev~c~---~r~glL~~Il~aLe~lgL~V~~A~Ist 192 (264)
|++.+. +.++++.+++++|.+.++.+.....+.
T Consensus 3 i~i~g~~~~~~~~~~~~i~~~l~~~~i~v~~i~~~~ 38 (65)
T cd04892 3 VSVVGAGMRGTPGVAARIFSALAEAGINIIMISQGS 38 (65)
T ss_pred EEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEcCC
Confidence 445443 578999999999999999997765533
No 125
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=58.59 E-value=56 Score=22.28 Aligned_cols=29 Identities=3% Similarity=-0.066 Sum_probs=23.6
Q ss_pred CCCChHHHHHHHHHhCCCeeeEEEEEecC
Q 024670 166 YRPELMSDLRQALDALPLKMLKAEISTLG 194 (264)
Q Consensus 166 ~r~glL~~Il~aLe~lgL~V~~A~Ist~g 194 (264)
++++.+.+++++|.+.+++|.-...++.+
T Consensus 13 ~~~~~~~~if~~L~~~~I~v~~i~q~~s~ 41 (66)
T cd04919 13 NMIGIAGRMFTTLADHRINIEMISQGASE 41 (66)
T ss_pred CCcCHHHHHHHHHHHCCCCEEEEEecCcc
Confidence 57899999999999999999766554533
No 126
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=55.75 E-value=68 Score=22.38 Aligned_cols=32 Identities=3% Similarity=-0.076 Sum_probs=25.6
Q ss_pred CCCChHHHHHHHHHhCCCeeeEEEEEecCCeE
Q 024670 166 YRPELMSDLRQALDALPLKMLKAEISTLGGRL 197 (264)
Q Consensus 166 ~r~glL~~Il~aLe~lgL~V~~A~Ist~g~r~ 197 (264)
+.+|++.+++++|.+.|+.|.-...++.+-.+
T Consensus 12 ~~~~~~~~i~~aL~~~~I~v~~i~~g~s~~si 43 (65)
T cd04918 12 RSSLILERAFHVLYTKGVNVQMISQGASKVNI 43 (65)
T ss_pred CCccHHHHHHHHHHHCCCCEEEEEecCccceE
Confidence 35789999999999999999777766665433
No 127
>PLN02317 arogenate dehydratase
Probab=55.42 E-value=87 Score=30.51 Aligned_cols=47 Identities=11% Similarity=0.108 Sum_probs=36.4
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCeeeEEEEEecCCe---------------EEEEEEEeecC
Q 024670 160 ASICCEYRPELMSDLRQALDALPLKMLKAEISTLGGR---------------LKNVIVFTSCK 207 (264)
Q Consensus 160 vev~c~~r~glL~~Il~aLe~lgL~V~~A~Ist~g~r---------------~~~vF~v~~~~ 207 (264)
|-+.-+++||.|.+++.+|...++.+++.+.-...++ ..+.||+ ++.
T Consensus 286 ivfsl~~~pG~L~k~L~~Fa~~~INLtkIESRP~~~~~~~~~~~~~~~~~~~~eY~FyV-D~e 347 (382)
T PLN02317 286 IVFSLEEGPGVLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNSGTAKYFDYLFYV-DFE 347 (382)
T ss_pred EEEEcCCCCchHHHHHHHHHHCCCCEEEEEeeecCCCCccccccccccccccccEEEEE-EEE
Confidence 3344478999999999999999999999987665443 4578888 443
No 128
>PRK11898 prephenate dehydratase; Provisional
Probab=53.61 E-value=74 Score=29.36 Aligned_cols=44 Identities=5% Similarity=-0.048 Sum_probs=34.3
Q ss_pred EEEEcCC-CCChHHHHHHHHHhCCCeeeEEEEEecCCe-EEEEEEE
Q 024670 160 ASICCEY-RPELMSDLRQALDALPLKMLKAEISTLGGR-LKNVIVF 203 (264)
Q Consensus 160 vev~c~~-r~glL~~Il~aLe~lgL~V~~A~Ist~g~r-~~~vF~v 203 (264)
+-+..++ +||.|.++++.|...|+.+++-+.-...++ ..+.|++
T Consensus 199 lif~l~~~~pGsL~~~L~~F~~~~INLt~IeSRP~~~~~~~y~F~v 244 (283)
T PRK11898 199 LVLTLPNNLPGALYKALSEFAWRGINLTRIESRPTKTGLGTYFFFI 244 (283)
T ss_pred EEEEeCCCCccHHHHHHHHHHHCCCCeeeEecccCCCCCccEEEEE
Confidence 4455555 599999999999999999999998765433 3567777
No 129
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=49.04 E-value=40 Score=27.84 Aligned_cols=38 Identities=16% Similarity=0.258 Sum_probs=33.3
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeeeEEEEEecCCe
Q 024670 159 KASICCEYRPELMSDLRQALDALPLKMLKAEISTLGGR 196 (264)
Q Consensus 159 ~vev~c~~r~glL~~Il~aLe~lgL~V~~A~Ist~g~r 196 (264)
.|++..+++||-|..++++|.+.|+.|.--.|+-.+++
T Consensus 5 QISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~dF 42 (142)
T COG4747 5 QISVFLENKPGRLASVANKLKEAGINIRAFTIADTGDF 42 (142)
T ss_pred EEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccCc
Confidence 46788899999999999999999999988888766653
No 130
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=48.96 E-value=92 Score=21.92 Aligned_cols=28 Identities=18% Similarity=0.159 Sum_probs=23.2
Q ss_pred CCChHHHHHHHHHhCCCeeeEEEEEecC
Q 024670 167 RPELMSDLRQALDALPLKMLKAEISTLG 194 (264)
Q Consensus 167 r~glL~~Il~aLe~lgL~V~~A~Ist~g 194 (264)
.+|++.+++++|.+.|+++.-...++.+
T Consensus 14 ~~gv~~ki~~~L~~~~I~v~~i~~~~s~ 41 (66)
T cd04915 14 TPGVLARGLAALAEAGIEPIAAHQSMRN 41 (66)
T ss_pred cchHHHHHHHHHHHCCCCEEEEEecCCe
Confidence 6789999999999999999776655543
No 131
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=48.33 E-value=21 Score=31.04 Aligned_cols=64 Identities=14% Similarity=0.251 Sum_probs=49.5
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCeeeEEEEEecCCeEEEEEEEeecCCCCchhhhhhHHHHHHHHHHH
Q 024670 157 LYKASICCEYRPELMSDLRQALDALPLKMLKAEISTLGGRLKNVIVFTSCKEGNAEASQTLANDVQQALNSV 228 (264)
Q Consensus 157 ~V~vev~c~~r~glL~~Il~aLe~lgL~V~~A~Ist~g~r~~~vF~v~~~~~~~~~~~~~~~~~l~qAL~~v 228 (264)
.+.|.....+|||+.-.|.++..+.|-.++.++++.+|+.+.-+..+.-. -..+..|+++|..+
T Consensus 5 ~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla~~g~~~a~i~lisgs--------~dav~~le~~l~~l 68 (176)
T COG2716 5 YLVITAVGADRPGLVNTLARAVASSGCNWLESRLAMLGEEFAGIMLISGS--------WDAVTLLEATLPLL 68 (176)
T ss_pred EEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHHHhhcceeEEEEEeeC--------HHHHHHHHHHhhcc
Confidence 35678899999999999999999999999999999999987655555221 12346777776543
No 132
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=47.64 E-value=27 Score=30.38 Aligned_cols=73 Identities=8% Similarity=0.074 Sum_probs=45.4
Q ss_pred ceeEEEEEEcCCCCChHHHHHHHHHhCCCeeeEEEEEe--cCCeEEEEEEEeecCCCCchhhhhhHHHHHHHHHHHHH
Q 024670 155 DFLYKASICCEYRPELMSDLRQALDALPLKMLKAEIST--LGGRLKNVIVFTSCKEGNAEASQTLANDVQQALNSVLE 230 (264)
Q Consensus 155 ~~~V~vev~c~~r~glL~~Il~aLe~lgL~V~~A~Ist--~g~r~~~vF~v~~~~~~~~~~~~~~~~~l~qAL~~vl~ 230 (264)
...|.+++...||||++-++.+.|..+|+.|.+-.-.| ..+.-..-|+.... ..-. .......|++++...-+
T Consensus 90 ~~~v~v~v~a~DrpgIv~~~T~lf~~~~inie~L~~~~~~a~~s~~~lfha~it-~~lP--a~~~i~~l~~~f~al~~ 164 (176)
T COG2716 90 PAPVWVYVDANDRPGIVEEFTALFDGHGINIENLVSRTYPAPGSSAPLFHAQIT-ARLP--ANLSISALRDAFEALCD 164 (176)
T ss_pred CceEEEEEEecCCccHHHHHHHHHHhcCCchhhceeeeeecCCCCccceehhhh-ccCC--CcCcHHHHHHHHHHHHH
Confidence 34567788999999999999999999999885544333 22333334444221 1111 12335677777766543
No 133
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=47.11 E-value=89 Score=21.22 Aligned_cols=26 Identities=12% Similarity=0.112 Sum_probs=22.2
Q ss_pred cCCCCChHHHHHHHHHhCCCeeeEEE
Q 024670 164 CEYRPELMSDLRQALDALPLKMLKAE 189 (264)
Q Consensus 164 c~~r~glL~~Il~aLe~lgL~V~~A~ 189 (264)
.++.+|.+.+++++|.+.|+.|.-..
T Consensus 9 ~~~~~g~~~~i~~~L~~~~I~i~~i~ 34 (75)
T cd04913 9 VPDKPGVAAKIFGALAEANINVDMIV 34 (75)
T ss_pred CCCCCcHHHHHHHHHHHcCCeEEEEE
Confidence 36789999999999999999996443
No 134
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric. This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=46.39 E-value=75 Score=31.76 Aligned_cols=50 Identities=8% Similarity=-0.025 Sum_probs=37.7
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCeeeEEEEEecCCeE-E-EEEEEeecC
Q 024670 157 LYKASICCEYRPELMSDLRQALDALPLKMLKAEISTLGGRL-K-NVIVFTSCK 207 (264)
Q Consensus 157 ~V~vev~c~~r~glL~~Il~aLe~lgL~V~~A~Ist~g~r~-~-~vF~v~~~~ 207 (264)
.+.|-+...+++|-|.++++.|...|+.+++.+.-...+.. . ..|+| .|.
T Consensus 31 ktSLIFsL~d~pGaL~~vL~vFa~~gINLThIESRPsk~~~~e~Y~FfV-D~E 82 (464)
T TIGR01270 31 RLSIIFSLSNVVGDLSKAIAIFQDRHINILHLESRDSKDGTSKTMDVLV-DVE 82 (464)
T ss_pred eEEEEEECCCCchHHHHHHHHHHHCCCCEEEEECCcCCCCCCccEEEEE-EEE
Confidence 34445566889999999999999999999999986654443 3 46777 443
No 135
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=45.22 E-value=5 Score=41.64 Aligned_cols=59 Identities=19% Similarity=0.265 Sum_probs=49.5
Q ss_pred HhhhccHHHHHHHHHHHHhHHHHHccCCCC-----CCCChhhHHHHHHHHHHHHHHHHHHHhcc
Q 024670 73 ALKNHSEAERRRRERINAHLDTLRGLVPPN-----GKMDKATLLAEVIRQVKELKTNAIEASKG 131 (264)
Q Consensus 73 ~~~~h~~~ER~RR~~in~~~~~Lr~lvP~~-----~k~dkasiL~~ai~yik~Lq~~~~~l~~~ 131 (264)
....|+-+|.+||..+.-.|..|-++.-+. .|+-++.-++.+++||..++.+..+++++
T Consensus 651 r~it~~Sa~qkrr~n~kl~~~~~Ns~~Sn~~~l~s~k~t~~~~~q~~vhYi~~t~~e~~~v~~e 714 (856)
T KOG3582|consen 651 RPITHISAEQKRRFNIKLQFDVLNSLSSNSSSLSSIKTTNSNSLQKTVHYINVTQQERVPVQEE 714 (856)
T ss_pred CcccCccHHHHHHhhHHhhhHhhhhhccCcccccchhhhccccccCceeeeeccchhccccchh
Confidence 347899999999999999999999998764 56677777999999999999876666554
No 136
>PRK08526 threonine dehydratase; Provisional
Probab=43.21 E-value=1.1e+02 Score=29.81 Aligned_cols=39 Identities=13% Similarity=0.171 Sum_probs=33.8
Q ss_pred eeEEEEEEcCCCCChHHHHHHHHHhCCCeeeEEEEEecC
Q 024670 156 FLYKASICCEYRPELMSDLRQALDALPLKMLKAEISTLG 194 (264)
Q Consensus 156 ~~V~vev~c~~r~glL~~Il~aLe~lgL~V~~A~Ist~g 194 (264)
..+++.+.-+++||-|.++++.+.+.+.+|+........
T Consensus 325 r~~~~~~~~~d~pg~l~~~~~~~~~~~~~i~~~~~~r~~ 363 (403)
T PRK08526 325 RKMKLHVTLVDKPGALMGLTDILKEANANIVKIDYDRFS 363 (403)
T ss_pred CEEEEEEEcCCCCCHHHHHHHHHccCCCcEEEEEEEecc
Confidence 467888899999999999999999999999988875543
No 137
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.
Probab=42.97 E-value=1.1e+02 Score=30.50 Aligned_cols=48 Identities=4% Similarity=-0.032 Sum_probs=35.7
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeeeEEEEEecCC-eEEEEEEEeecC
Q 024670 159 KASICCEYRPELMSDLRQALDALPLKMLKAEISTLGG-RLKNVIVFTSCK 207 (264)
Q Consensus 159 ~vev~c~~r~glL~~Il~aLe~lgL~V~~A~Ist~g~-r~~~vF~v~~~~ 207 (264)
.+-+...+++|-|.++++.|...|+.+++.+.-.... .-...|+| .|.
T Consensus 18 SLiFsL~d~pGaL~~vL~vFa~~gINLthIESRPsk~~~~eY~FFV-D~e 66 (436)
T TIGR01268 18 SLIFSLKEEAGALAETLKLFQAHDVNLTHIESRPSKTHPGEYEFFV-EFD 66 (436)
T ss_pred EEEEEcCCCCcHHHHHHHHHHHCCCCeeEEecccCCCCCccEEEEE-EEe
Confidence 3444558899999999999999999999998754432 23466777 443
No 138
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=42.34 E-value=1e+02 Score=20.67 Aligned_cols=33 Identities=9% Similarity=0.037 Sum_probs=25.4
Q ss_pred EEEEcC---CCCChHHHHHHHHHhCCCeeeEEEEEe
Q 024670 160 ASICCE---YRPELMSDLRQALDALPLKMLKAEIST 192 (264)
Q Consensus 160 vev~c~---~r~glL~~Il~aLe~lgL~V~~A~Ist 192 (264)
|.+.+. ..++++.+++++|.+.++.+.-...+.
T Consensus 4 isivg~~~~~~~~~~~~i~~~L~~~~i~v~~i~~~~ 39 (66)
T cd04916 4 IMVVGEGMKNTVGVSARATAALAKAGINIRMINQGS 39 (66)
T ss_pred EEEEcCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 445553 578999999999999999997665443
No 139
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=42.31 E-value=37 Score=33.39 Aligned_cols=36 Identities=25% Similarity=0.381 Sum_probs=32.1
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeeeEEEEEecC
Q 024670 159 KASICCEYRPELMSDLRQALDALPLKMLKAEISTLG 194 (264)
Q Consensus 159 ~vev~c~~r~glL~~Il~aLe~lgL~V~~A~Ist~g 194 (264)
+++|.|.||-|+.-++++.|-.-++++...+|-..+
T Consensus 2 RleV~cedRlGltrelLdlLv~r~idl~~iEid~~~ 37 (511)
T COG3283 2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIG 37 (511)
T ss_pred ceEEEehhhhchHHHHHHHHHhcccCccceeecCCC
Confidence 579999999999999999999999999999984444
No 140
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=38.99 E-value=34 Score=21.51 Aligned_cols=20 Identities=45% Similarity=0.730 Sum_probs=14.6
Q ss_pred cHHHHHHHHHHHHhHHHHHc
Q 024670 78 SEAERRRRERINAHLDTLRG 97 (264)
Q Consensus 78 ~~~ER~RR~~in~~~~~Lr~ 97 (264)
.+-=|+||+.+..++..||.
T Consensus 10 keqLrrr~eqLK~kLeqlrn 29 (32)
T PF02344_consen 10 KEQLRRRREQLKHKLEQLRN 29 (32)
T ss_dssp HHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 34457889999999999884
No 141
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=38.15 E-value=1.6e+02 Score=21.47 Aligned_cols=26 Identities=4% Similarity=-0.078 Sum_probs=22.5
Q ss_pred cCCCCChHHHHHHHHHhCCCeeeEEE
Q 024670 164 CEYRPELMSDLRQALDALPLKMLKAE 189 (264)
Q Consensus 164 c~~r~glL~~Il~aLe~lgL~V~~A~ 189 (264)
.++.+|++.+|+++|.+.++.|....
T Consensus 11 ~~~~~g~~~~IF~~La~~~I~VDmI~ 36 (75)
T cd04932 11 MLHAQGFLAKVFGILAKHNISVDLIT 36 (75)
T ss_pred CCCCcCHHHHHHHHHHHcCCcEEEEe
Confidence 35679999999999999999887764
No 142
>PRK12483 threonine dehydratase; Reviewed
Probab=36.68 E-value=2e+02 Score=29.03 Aligned_cols=50 Identities=10% Similarity=0.019 Sum_probs=36.7
Q ss_pred eeEEEEEEcCCCCChHHHHHHHHHhCCCeeeEEEEEecCCeEEEEEEEeecC
Q 024670 156 FLYKASICCEYRPELMSDLRQALDALPLKMLKAEISTLGGRLKNVIVFTSCK 207 (264)
Q Consensus 156 ~~V~vev~c~~r~glL~~Il~aLe~lgL~V~~A~Ist~g~r~~~vF~v~~~~ 207 (264)
..+++.+.-+++||-|.++++.|... +|+..+......+...+++....+
T Consensus 344 r~~~~~v~~~d~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~v~v~ie~~ 393 (521)
T PRK12483 344 REAIIAVTIPEQPGSFKAFCAALGKR--QITEFNYRYADAREAHLFVGVQTH 393 (521)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHhhhc--CeEEEEEEecCCCeeEEEEEEEeC
Confidence 46778889999999999999999887 776666655444445566654443
No 143
>PRK14633 hypothetical protein; Provisional
Probab=36.59 E-value=2.3e+02 Score=23.67 Aligned_cols=54 Identities=13% Similarity=0.107 Sum_probs=38.7
Q ss_pred HHHHHHHhCCCeeeEEEEEecCCeEEEEEEEeecCCCCchhhhhhHHHHHHHHHHHHHh
Q 024670 173 DLRQALDALPLKMLKAEISTLGGRLKNVIVFTSCKEGNAEASQTLANDVQQALNSVLEK 231 (264)
Q Consensus 173 ~Il~aLe~lgL~V~~A~Ist~g~r~~~vF~v~~~~~~~~~~~~~~~~~l~qAL~~vl~~ 231 (264)
-+..+++++|+++...++...++.+.-+|+- +.++. .-..+..+.++|..+++.
T Consensus 9 lv~p~~~~~G~eL~dve~~~~~~~~lrV~ID---~~~Gv--~lddC~~vSr~i~~~LD~ 62 (150)
T PRK14633 9 IVEPITADLGYILWGIEVVGSGKLTIRIFID---HENGV--SVDDCQIVSKEISAVFDV 62 (150)
T ss_pred HHHHHHHHCCCEEEEEEEEeCCCcEEEEEEe---CCCCC--CHHHHHHHHHHHHHHhcc
Confidence 3556789999999999998777766655553 33332 344577889999999884
No 144
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=36.53 E-value=80 Score=30.70 Aligned_cols=45 Identities=18% Similarity=0.149 Sum_probs=36.7
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeeeEEEEEecCCeEEEEEEE
Q 024670 159 KASICCEYRPELMSDLRQALDALPLKMLKAEISTLGGRLKNVIVF 203 (264)
Q Consensus 159 ~vev~c~~r~glL~~Il~aLe~lgL~V~~A~Ist~g~r~~~vF~v 203 (264)
++-+.-.++||.+.+|..+|.+.++.|..-.+...++....+|-+
T Consensus 340 rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~~~~~A~~iie~ 384 (409)
T PRK11790 340 RLLHIHENRPGVLAAINQIFAEQGINIAAQYLQTDGEIGYVVIDV 384 (409)
T ss_pred eEEEEeCCCCCHHHHHHHHHHhcCCCHHHheeccCCCEEEEEEEe
Confidence 444577899999999999999999999888888888766644443
No 145
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=36.30 E-value=33 Score=29.35 Aligned_cols=23 Identities=30% Similarity=0.429 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHhHHHHHccCCCC
Q 024670 80 AERRRRERINAHLDTLRGLVPPN 102 (264)
Q Consensus 80 ~ER~RR~~in~~~~~Lr~lvP~~ 102 (264)
.||.|-.++|+.+.-|+.|+|+.
T Consensus 29 ~e~~R~~~ls~~s~l~g~l~pgs 51 (173)
T KOG4447|consen 29 KERGRKRRLSDASTLLGKLEPGS 51 (173)
T ss_pred HHHhHHhhhhhhhhhccccCCCC
Confidence 58889899999999999999965
No 146
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=35.98 E-value=2.9e+02 Score=26.71 Aligned_cols=36 Identities=8% Similarity=0.028 Sum_probs=29.3
Q ss_pred eeEEEEEEcCCCCChHHHHHHHHHhCCCeeeEEEEE
Q 024670 156 FLYKASICCEYRPELMSDLRQALDALPLKMLKAEIS 191 (264)
Q Consensus 156 ~~V~vev~c~~r~glL~~Il~aLe~lgL~V~~A~Is 191 (264)
..+++.+.-+++||-|.++++.+-..+-+|+..+.-
T Consensus 324 r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~y~ 359 (409)
T TIGR02079 324 LKHYFIVRFPQRPGALREFLNDVLGPNDDITRFEYT 359 (409)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEee
Confidence 467788999999999999999666676688866654
No 147
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=34.27 E-value=2.5e+02 Score=23.25 Aligned_cols=28 Identities=14% Similarity=0.140 Sum_probs=23.2
Q ss_pred EEEcCCCCChHHHHHHHHHhCCCeeeEE
Q 024670 161 SICCEYRPELMSDLRQALDALPLKMLKA 188 (264)
Q Consensus 161 ev~c~~r~glL~~Il~aLe~lgL~V~~A 188 (264)
-+.-+|+||-|+.|+++|-..++.+--+
T Consensus 73 aVEmeD~PG~l~~I~~vl~d~diNldYi 100 (142)
T COG4747 73 AVEMEDVPGGLSRIAEVLGDADINLDYI 100 (142)
T ss_pred EEEecCCCCcHHHHHHHHhhcCcCceee
Confidence 4677899999999999999888766444
No 148
>PRK08639 threonine dehydratase; Validated
Probab=33.91 E-value=3.1e+02 Score=26.62 Aligned_cols=66 Identities=9% Similarity=0.020 Sum_probs=40.0
Q ss_pred eeEEEEEEcCCCCChHHHHHHHHHhCCCeeeEEEEEe-cCCeEEEEEEEeecCCCCchhhhhhHHHHHHHHHH
Q 024670 156 FLYKASICCEYRPELMSDLRQALDALPLKMLKAEIST-LGGRLKNVIVFTSCKEGNAEASQTLANDVQQALNS 227 (264)
Q Consensus 156 ~~V~vev~c~~r~glL~~Il~aLe~lgL~V~~A~Ist-~g~r~~~vF~v~~~~~~~~~~~~~~~~~l~qAL~~ 227 (264)
..+++.+.-++|||-|.++++.+-..+-+|+..+... .+.....+++.....+ ....+.|.++|.+
T Consensus 335 r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~~~~~~~~~~~~v~v~iE~~~------~~h~~~i~~~L~~ 401 (420)
T PRK08639 335 LKHYFIVNFPQRPGALREFLDDVLGPNDDITRFEYLKKNNRETGPVLVGIELKD------AEDYDGLIERMEA 401 (420)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEEeecCCCCceEEEEEEEeCC------HHHHHHHHHHHHH
Confidence 5678889999999999999995555555777665432 1222223444433332 1234566666655
No 149
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=32.79 E-value=2.3e+02 Score=21.76 Aligned_cols=64 Identities=9% Similarity=0.236 Sum_probs=46.4
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeeeEEEEEec--CCeEEEEEEEeecCCCCchhhhhhHHHHHHHHHHHHH
Q 024670 158 YKASICCEYRPELMSDLRQALDALPLKMLKAEISTL--GGRLKNVIVFTSCKEGNAEASQTLANDVQQALNSVLE 230 (264)
Q Consensus 158 V~vev~c~~r~glL~~Il~aLe~lgL~V~~A~Ist~--g~r~~~vF~v~~~~~~~~~~~~~~~~~l~qAL~~vl~ 230 (264)
..+.+....+|+.|-+++...+--|+.|-..++++. +++.---|.|..+ ...+.|.-.|.++.+
T Consensus 4 yqldl~ar~~pe~leRVLrvtrhRGF~vcamnmt~~~da~~~nie~tV~s~---------R~~~lL~~QLeKl~D 69 (86)
T COG3978 4 YQLDLSARFNPETLERVLRVTRHRGFRVCAMNMTAAVDAGNANIELTVDSD---------RSVDLLTSQLEKLYD 69 (86)
T ss_pred EEEeeeccCChHHHHHHHHHhhhcCeEEEEeecccccccccceEEEEEcCC---------CChHHHHHHHHHHcc
Confidence 456778899999999999999999999999998887 5555323333111 234667777777654
No 150
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=32.06 E-value=76 Score=22.41 Aligned_cols=47 Identities=28% Similarity=0.388 Sum_probs=35.0
Q ss_pred hccHHHHHHHHHHHHhHHHHHccCCCCCCCChhhHHHHHHHHHHHHHHHHHHHh
Q 024670 76 NHSEAERRRRERINAHLDTLRGLVPPNGKMDKATLLAEVIRQVKELKTNAIEAS 129 (264)
Q Consensus 76 ~h~~~ER~RR~~in~~~~~Lr~lvP~~~k~dkasiL~~ai~yik~Lq~~~~~l~ 129 (264)
.....=|.-|-..+.++..+..++- ..+ .++|.+||+++-+.+++.+
T Consensus 11 ~~~~~lR~~RHD~~NhLqvI~gllq-lg~------~~~a~eYi~~~~~~~~~~s 57 (62)
T PF14689_consen 11 ELIDSLRAQRHDFLNHLQVIYGLLQ-LGK------YEEAKEYIKELSKDLQQES 57 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-TT-------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHH-CCC------HHHHHHHHHHHHHHHHHHH
Confidence 3344457778889999999999875 222 5788999999998887654
No 151
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=30.30 E-value=2.8e+02 Score=27.80 Aligned_cols=64 Identities=8% Similarity=0.019 Sum_probs=42.4
Q ss_pred eeEEEEEEcCCCCChHHHHHHHHHhCCCeeeEEEEEecCCeEEEEEEEeecCCCCchhhhhhHHHHHHHHHH
Q 024670 156 FLYKASICCEYRPELMSDLRQALDALPLKMLKAEISTLGGRLKNVIVFTSCKEGNAEASQTLANDVQQALNS 227 (264)
Q Consensus 156 ~~V~vev~c~~r~glL~~Il~aLe~lgL~V~~A~Ist~g~r~~~vF~v~~~~~~~~~~~~~~~~~l~qAL~~ 227 (264)
..+.+.+.-+++||-|.+++++|.. -.|+..+....+.....+|+.....+ ....+.|.++|.+
T Consensus 324 re~~l~V~iPerPGal~~f~~~i~~--~nItef~yr~~~~~~a~v~vgie~~~------~~~~~~l~~~L~~ 387 (499)
T TIGR01124 324 REALLAVTIPEQPGSFLKFCELLGN--RNITEFNYRYADRKDAHIFVGVQLSN------PQERQEILARLND 387 (499)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHhhh--cceEEEEEEecCCCeEEEEEEEEeCC------HHHHHHHHHHHHH
Confidence 4677888999999999999999987 36665555444444456666655431 1234566666654
No 152
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=29.67 E-value=1.7e+02 Score=19.46 Aligned_cols=27 Identities=11% Similarity=0.134 Sum_probs=22.3
Q ss_pred CCCChHHHHHHHHHhCCCeeeEEEEEe
Q 024670 166 YRPELMSDLRQALDALPLKMLKAEIST 192 (264)
Q Consensus 166 ~r~glL~~Il~aLe~lgL~V~~A~Ist 192 (264)
+.++++.+++++|.+.++.|.-...++
T Consensus 13 ~~~~~~~~i~~~L~~~~I~v~~i~q~~ 39 (66)
T cd04924 13 GTPGVAGRVFGALGKAGINVIMISQGS 39 (66)
T ss_pred CCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 568999999999999999986665444
No 153
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=29.30 E-value=1.7e+02 Score=19.65 Aligned_cols=24 Identities=4% Similarity=-0.007 Sum_probs=21.2
Q ss_pred CCCChHHHHHHHHHhCCCeeeEEE
Q 024670 166 YRPELMSDLRQALDALPLKMLKAE 189 (264)
Q Consensus 166 ~r~glL~~Il~aLe~lgL~V~~A~ 189 (264)
..+|+..+|+++|++.++.|....
T Consensus 12 ~~~~~~~~if~~l~~~~i~v~~i~ 35 (62)
T cd04890 12 GEVGFLRKIFEILEKHGISVDLIP 35 (62)
T ss_pred cccCHHHHHHHHHHHcCCeEEEEe
Confidence 568999999999999999888773
No 154
>PRK08818 prephenate dehydrogenase; Provisional
Probab=29.24 E-value=1.3e+02 Score=28.94 Aligned_cols=40 Identities=10% Similarity=0.026 Sum_probs=31.1
Q ss_pred EcC-CCCChHHHHHHHHHhCCCeeeEEEEEecCCeEEEEEEE
Q 024670 163 CCE-YRPELMSDLRQALDALPLKMLKAEISTLGGRLKNVIVF 203 (264)
Q Consensus 163 ~c~-~r~glL~~Il~aLe~lgL~V~~A~Ist~g~r~~~vF~v 203 (264)
.-+ |+||.|.+|+..|...|+.+.+-++....... +.|++
T Consensus 301 ~v~~d~pG~L~~vl~~la~~~INit~Ies~~~r~~~-y~f~i 341 (370)
T PRK08818 301 YLPEDRPGSLRTLLHVFEQHGVNLSSIHSSRTPAGE-LHFRI 341 (370)
T ss_pred ECCCCCCChHHHHHHHHHHcCcccceEEEecccCce-EEEEE
Confidence 345 99999999999999999999999984333333 34776
No 155
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=29.00 E-value=1.5e+02 Score=18.63 Aligned_cols=26 Identities=15% Similarity=0.103 Sum_probs=21.6
Q ss_pred CCCChHHHHHHHHHhCCCeeeEEEEE
Q 024670 166 YRPELMSDLRQALDALPLKMLKAEIS 191 (264)
Q Consensus 166 ~r~glL~~Il~aLe~lgL~V~~A~Is 191 (264)
+.+|.+.+++++|.+.++.|.....+
T Consensus 12 ~~~~~~~~i~~~l~~~~i~i~~i~~~ 37 (60)
T cd04868 12 GTPGVAAKIFSALAEAGINVDMISQS 37 (60)
T ss_pred CCCCHHHHHHHHHHHCCCcEEEEEcC
Confidence 36899999999999999988666443
No 156
>PRK14632 hypothetical protein; Provisional
Probab=28.81 E-value=2.8e+02 Score=23.82 Aligned_cols=54 Identities=19% Similarity=0.177 Sum_probs=36.0
Q ss_pred HHHHHHhCCCeeeEEEEEecCCeEEEEEEEeecCCCCchhhhhhHHHHHHHHHHHHHhc
Q 024670 174 LRQALDALPLKMLKAEISTLGGRLKNVIVFTSCKEGNAEASQTLANDVQQALNSVLEKA 232 (264)
Q Consensus 174 Il~aLe~lgL~V~~A~Ist~g~r~~~vF~v~~~~~~~~~~~~~~~~~l~qAL~~vl~~~ 232 (264)
+-.+++++|+++...++...+.+++-+|+ ++.++. .-..+..+.++|..+|+..
T Consensus 14 i~pv~~~~G~eLvdve~~~~~~~~lrV~I---D~~~GV--~ldDC~~vSr~is~~LD~~ 67 (172)
T PRK14632 14 AGPFLASLGLELWGIELSYGGRTVVRLFV---DGPEGV--TIDQCAEVSRHVGLALEVE 67 (172)
T ss_pred HHHHHHHCCCEEEEEEEEeCCCcEEEEEE---ECCCCC--CHHHHHHHHHHHHHHhccc
Confidence 34457899999999998865555554444 333332 3345678888998888843
No 157
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=27.93 E-value=1.2e+02 Score=21.68 Aligned_cols=31 Identities=6% Similarity=-0.080 Sum_probs=24.0
Q ss_pred EEEEEc---CCCCChHHHHHHHHHhCCCeeeEEE
Q 024670 159 KASICC---EYRPELMSDLRQALDALPLKMLKAE 189 (264)
Q Consensus 159 ~vev~c---~~r~glL~~Il~aLe~lgL~V~~A~ 189 (264)
.|++.+ ...+|++.+++++|.+.++.|....
T Consensus 3 ~Vsi~g~~l~~~~g~~~~if~~L~~~~I~v~~i~ 36 (75)
T cd04912 3 LLNIKSNRMLGAHGFLAKVFEIFAKHGLSVDLIS 36 (75)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHcCCeEEEEE
Confidence 345533 4568999999999999999996653
No 158
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=27.84 E-value=2.6e+02 Score=24.58 Aligned_cols=45 Identities=20% Similarity=0.146 Sum_probs=34.2
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeeeEEEEEecCCeEEEEEEE
Q 024670 159 KASICCEYRPELMSDLRQALDALPLKMLKAEISTLGGRLKNVIVF 203 (264)
Q Consensus 159 ~vev~c~~r~glL~~Il~aLe~lgL~V~~A~Ist~g~r~~~vF~v 203 (264)
-+++...++||.|.++.-.+.++|..|+.++--..++--...+|.
T Consensus 4 ~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~iYm 48 (218)
T COG1707 4 GLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKALIYM 48 (218)
T ss_pred eeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCceEEEEE
Confidence 357788999999999999999999999999865443322333444
No 159
>PRK09224 threonine dehydratase; Reviewed
Probab=27.60 E-value=4.1e+02 Score=26.59 Aligned_cols=65 Identities=8% Similarity=0.032 Sum_probs=41.2
Q ss_pred eeEEEEEEcCCCCChHHHHHHHHHhCCCeeeEEEEEecCCeEEEEEEEeecCCCCchhhhhhHHHHHHHHHH
Q 024670 156 FLYKASICCEYRPELMSDLRQALDALPLKMLKAEISTLGGRLKNVIVFTSCKEGNAEASQTLANDVQQALNS 227 (264)
Q Consensus 156 ~~V~vev~c~~r~glL~~Il~aLe~lgL~V~~A~Ist~g~r~~~vF~v~~~~~~~~~~~~~~~~~l~qAL~~ 227 (264)
..+.+.+.-++|||-|.++++.|. +-.|+..+....+.....+|+........ ...+.|.++|.+
T Consensus 327 re~~l~v~iPerPGaL~~f~~~l~--~~nItef~yr~~~~~~a~V~vgie~~~~~-----~~~~~i~~~L~~ 391 (504)
T PRK09224 327 REALLAVTIPEEPGSFLKFCELLG--GRNVTEFNYRYADAKEAHIFVGVQLSRGQ-----EERAEIIAQLRA 391 (504)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHhc--cCcEEEEEEEecCCCeEEEEEEEEeCChh-----hHHHHHHHHHHH
Confidence 467778899999999999999998 45565555444333344566664544221 113556666654
No 160
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=27.37 E-value=4.9e+02 Score=30.13 Aligned_cols=33 Identities=18% Similarity=0.132 Sum_probs=28.9
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCeeeEEE
Q 024670 157 LYKASICCEYRPELMSDLRQALDALPLKMLKAE 189 (264)
Q Consensus 157 ~V~vev~c~~r~glL~~Il~aLe~lgL~V~~A~ 189 (264)
...|+|.|+|.|.|+..|.-+|..+|+.|+...
T Consensus 17 ~TvI~IV~dDmPFLVDSV~~~L~r~gl~I~~i~ 49 (1528)
T PF05088_consen 17 HTVIEIVTDDMPFLVDSVRMELNRQGLTIHLII 49 (1528)
T ss_pred CeEEEEEcCCCCcHHHHHHHHHHhCCCceEEEe
Confidence 456789999999999999999999999886543
No 161
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=27.25 E-value=1.9e+02 Score=18.99 Aligned_cols=24 Identities=13% Similarity=0.198 Sum_probs=21.0
Q ss_pred CCCChHHHHHHHHHhCCCeeeEEE
Q 024670 166 YRPELMSDLRQALDALPLKMLKAE 189 (264)
Q Consensus 166 ~r~glL~~Il~aLe~lgL~V~~A~ 189 (264)
+.++++.+++++|.+.++.|.-..
T Consensus 12 ~~~~~~~~i~~~L~~~~i~v~~i~ 35 (63)
T cd04936 12 SHPGVAAKMFEALAEAGINIEMIS 35 (63)
T ss_pred CCccHHHHHHHHHHHCCCcEEEEE
Confidence 568999999999999999996665
No 162
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=26.66 E-value=17 Score=37.98 Aligned_cols=52 Identities=17% Similarity=0.214 Sum_probs=42.0
Q ss_pred hhccHHHHHHHHHHHHhHHHHHccCCCC-----CCCChhhHHHHHHHHHHHHHHHHHHHh
Q 024670 75 KNHSEAERRRRERINAHLDTLRGLVPPN-----GKMDKATLLAEVIRQVKELKTNAIEAS 129 (264)
Q Consensus 75 ~~h~~~ER~RR~~in~~~~~Lr~lvP~~-----~k~dkasiL~~ai~yik~Lq~~~~~l~ 129 (264)
..|+.++||+|-.+-++|..|-+|.|.. .+..+++||. +.|+.+++.-+.+.
T Consensus 789 a~sih~lrr~~~~~~dq~~sL~alrp~v~~~~~ql~S~tS~L~---dp~~~~eq~ska~~ 845 (856)
T KOG3582|consen 789 AGSIHALRRTRLNWLDQFCSLPALRPQVLLNLRQLLSSTSILT---DPIKQPEQASKAVT 845 (856)
T ss_pred cchHHHHHHHHHHHhhccccHHHHHHHHHhhHHHhhhhhhccc---CcccchHHHHHHHH
Confidence 5688899999999999999999999943 5668999999 67777777655443
No 163
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=25.79 E-value=2e+02 Score=18.84 Aligned_cols=24 Identities=13% Similarity=0.195 Sum_probs=20.8
Q ss_pred CCCChHHHHHHHHHhCCCeeeEEE
Q 024670 166 YRPELMSDLRQALDALPLKMLKAE 189 (264)
Q Consensus 166 ~r~glL~~Il~aLe~lgL~V~~A~ 189 (264)
+.++++.+++++|.+.++.+.-..
T Consensus 12 ~~~~~~~~i~~~L~~~~i~v~~i~ 35 (63)
T cd04923 12 SHPGVAAKMFKALAEAGINIEMIS 35 (63)
T ss_pred CCccHHHHHHHHHHHCCCCEEEEE
Confidence 468999999999999999886665
No 164
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=25.78 E-value=3.1e+02 Score=21.13 Aligned_cols=72 Identities=14% Similarity=0.224 Sum_probs=41.5
Q ss_pred EEEEEcCCCCC----hHHHHHHHHHhCCC--eeeEEEEEecCCeE--EEEEEEeecCCCCchh----------hhhhHHH
Q 024670 159 KASICCEYRPE----LMSDLRQALDALPL--KMLKAEISTLGGRL--KNVIVFTSCKEGNAEA----------SQTLAND 220 (264)
Q Consensus 159 ~vev~c~~r~g----lL~~Il~aLe~lgL--~V~~A~Ist~g~r~--~~vF~v~~~~~~~~~~----------~~~~~~~ 220 (264)
+|-+.|....| +-..|-++|+++|+ ++..+.+....+.. .|.|+....-....+. .-...++
T Consensus 3 KIL~aCG~GvgSS~~ik~kve~~l~~~gi~~~~~~~~v~~~~~~~~~aDiiv~s~~l~~~~~~~~~~~v~~~~~~~d~~e 82 (93)
T COG3414 3 KILAACGNGVGSSTMIKMKVEEVLKELGIDVDVEQCAVDEIKALTDGADIIVTSTKLADEFEDIPKGYVVITGNGMDIEE 82 (93)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHHcCCCceeeeEEecccccCCCcccEEEEehHhhhhcCcCCCceEEEEcccCCHHH
Confidence 45667877665 44567788999999 55555555444433 3555553322111100 1122478
Q ss_pred HHHHHHHHHH
Q 024670 221 VQQALNSVLE 230 (264)
Q Consensus 221 l~qAL~~vl~ 230 (264)
+.++|..+|.
T Consensus 83 i~~~l~~~L~ 92 (93)
T COG3414 83 IKQKLLEILK 92 (93)
T ss_pred HHHHHHHHHh
Confidence 8888888775
No 165
>PRK14623 hypothetical protein; Provisional
Probab=24.64 E-value=1.8e+02 Score=23.12 Aligned_cols=45 Identities=13% Similarity=0.217 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCCCceEeeecCCCCCCCCceeEEEEEEcCCC
Q 024670 111 LAEVIRQVKELKTNAIEASKGFLIPTDADEVKVEPYNDEEAGDADFLYKASICCEYR 167 (264)
Q Consensus 111 L~~ai~yik~Lq~~~~~l~~~~~~p~~~dev~Ve~~~~~~~~~~~~~V~vev~c~~r 167 (264)
+.+-++-.+++|++.+++++++. +.+|+..-.+ -.|+|.+.|...
T Consensus 3 ~~~~mkqaqkmQ~km~~~Qeel~------~~~v~g~sgg------G~VkVt~~G~~~ 47 (106)
T PRK14623 3 MMGMMGKLKEAQQKVEATKKRLD------TVLIDEQSSD------GLLKVTVTANRE 47 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh------ccEEEEEECC------ceEEEEEEcCcc
Confidence 45566778888999988887654 3445444322 356777777543
No 166
>PRK06349 homoserine dehydrogenase; Provisional
Probab=23.09 E-value=2.4e+02 Score=27.42 Aligned_cols=34 Identities=6% Similarity=0.140 Sum_probs=28.9
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeeeEEEEE
Q 024670 158 YKASICCEYRPELMSDLRQALDALPLKMLKAEIS 191 (264)
Q Consensus 158 V~vev~c~~r~glL~~Il~aLe~lgL~V~~A~Is 191 (264)
..+++...++||.|.+|...|.+.++.|.+..-.
T Consensus 349 yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~ 382 (426)
T PRK06349 349 YYLRLLVADKPGVLAKIAAIFAENGISIESILQK 382 (426)
T ss_pred EEEEEEecCCcchHHHHHHHHhhcCccEEEEEec
Confidence 5667788899999999999999999988866543
No 167
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=22.95 E-value=2.8e+02 Score=19.51 Aligned_cols=29 Identities=10% Similarity=0.109 Sum_probs=23.4
Q ss_pred CCCChHHHHHHHHHhCCCeeeEEEEEecC
Q 024670 166 YRPELMSDLRQALDALPLKMLKAEISTLG 194 (264)
Q Consensus 166 ~r~glL~~Il~aLe~lgL~V~~A~Ist~g 194 (264)
+.++++.+++++|.+.++.+.-...++.+
T Consensus 13 ~~~~~~~~i~~~L~~~~I~v~~i~~~~~~ 41 (80)
T cd04921 13 GVPGIAARIFSALARAGINVILISQASSE 41 (80)
T ss_pred CCccHHHHHHHHHHHCCCcEEEEEecCCc
Confidence 57899999999999999999766554333
No 168
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=22.32 E-value=2.2e+02 Score=18.15 Aligned_cols=26 Identities=12% Similarity=0.094 Sum_probs=22.5
Q ss_pred CCCCChHHHHHHHHHhCCCeeeEEEE
Q 024670 165 EYRPELMSDLRQALDALPLKMLKAEI 190 (264)
Q Consensus 165 ~~r~glL~~Il~aLe~lgL~V~~A~I 190 (264)
++.+|.+.+++++|.+.++.|.....
T Consensus 9 ~~~~~~~~~i~~~L~~~~i~i~~i~~ 34 (61)
T cd04891 9 PDKPGVAAKIFSALAEAGINVDMIVQ 34 (61)
T ss_pred CCCCcHHHHHHHHHHHcCCcEEEEEE
Confidence 57799999999999999999976654
No 169
>PRK14646 hypothetical protein; Provisional
Probab=21.78 E-value=4.9e+02 Score=21.88 Aligned_cols=58 Identities=14% Similarity=0.099 Sum_probs=37.8
Q ss_pred HHHHHHHHHhCCCeeeEEEEEecCC-eEEEEEEEeecCCCCchhhhhhHHHHHHHHHHHHHh
Q 024670 171 MSDLRQALDALPLKMLKAEISTLGG-RLKNVIVFTSCKEGNAEASQTLANDVQQALNSVLEK 231 (264)
Q Consensus 171 L~~Il~aLe~lgL~V~~A~Ist~g~-r~~~vF~v~~~~~~~~~~~~~~~~~l~qAL~~vl~~ 231 (264)
..-+..+++++|+++...++...++ .++-+|+- ...+++. .-..+..+.++|..+|+.
T Consensus 10 ~~li~p~~~~~G~eLvdve~~~~~~~~~LrV~ID-k~~g~gV--tldDC~~vSr~is~~LD~ 68 (155)
T PRK14646 10 EILLEKVANEFDLKICSLNIQTNQNPIVIKIIIK-KTNGDDI--SLDDCALFNTPASEEIEN 68 (155)
T ss_pred HHHHHHHHHHcCCEEEEEEEEeCCCCeEEEEEEE-CCCCCCc--cHHHHHHHHHHHHHHhCc
Confidence 3445567889999999999988655 44544443 2212222 234567888899888874
No 170
>cd04910 ACT_AK-Ectoine_1 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinase
Probab=21.39 E-value=3.4e+02 Score=19.92 Aligned_cols=31 Identities=6% Similarity=0.146 Sum_probs=24.4
Q ss_pred CCChHHHHHHHHHhCCCeeeEEEEEecCCeEEE
Q 024670 167 RPELMSDLRQALDALPLKMLKAEISTLGGRLKN 199 (264)
Q Consensus 167 r~glL~~Il~aLe~lgL~V~~A~Ist~g~r~~~ 199 (264)
.+|....|+++|.++++.++.- .+....+.+
T Consensus 14 ~~g~d~~i~~~l~~~~v~ii~K--~~nANtit~ 44 (71)
T cd04910 14 EVGYDLEILELLQRFKVSIIAK--DTNANTITH 44 (71)
T ss_pred ChhHHHHHHHHHHHcCCeEEEE--ecCCCeEEE
Confidence 4679999999999999999887 455554543
No 171
>cd04914 ACT_AKi-DapG-BS_1 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria, bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and
Probab=21.22 E-value=1.7e+02 Score=20.57 Aligned_cols=33 Identities=12% Similarity=0.153 Sum_probs=24.3
Q ss_pred EEEEEc-CCCCChHHHHHHHHHhCCCeeeEEEEE
Q 024670 159 KASICC-EYRPELMSDLRQALDALPLKMLKAEIS 191 (264)
Q Consensus 159 ~vev~c-~~r~glL~~Il~aLe~lgL~V~~A~Is 191 (264)
+|++.. +..+|.+.+|++.|.+.++.|--...+
T Consensus 3 ~vtv~~~~~~~~~~a~if~~La~~~InvDmI~~~ 36 (67)
T cd04914 3 QIKVKAKDNENDLQQRVFKALANAGISVDLINVS 36 (67)
T ss_pred EEEEecCCCCccHHHHHHHHHHHcCCcEEEEEec
Confidence 344444 356899999999999999887666433
No 172
>PLN02550 threonine dehydratase
Probab=21.09 E-value=5.4e+02 Score=26.58 Aligned_cols=64 Identities=5% Similarity=0.011 Sum_probs=39.0
Q ss_pred eeEEEEEEcCCCCChHHHHHHHHHhCCCeeeEEEEEecCCeEEEEEEEeecCCCCchhhhhhHHHHHHHHHH
Q 024670 156 FLYKASICCEYRPELMSDLRQALDALPLKMLKAEISTLGGRLKNVIVFTSCKEGNAEASQTLANDVQQALNS 227 (264)
Q Consensus 156 ~~V~vev~c~~r~glL~~Il~aLe~lgL~V~~A~Ist~g~r~~~vF~v~~~~~~~~~~~~~~~~~l~qAL~~ 227 (264)
..+++.+.-+++||-|.++++.|-.. +|+..+....+-....+++....+. ....+.|.++|++
T Consensus 416 r~~~~~v~ipd~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~v~v~ie~~~------~~~~~~i~~~l~~ 479 (591)
T PLN02550 416 QEAVLATFMPEEPGSFKRFCELVGPM--NITEFKYRYSSEKEALVLYSVGVHT------EQELQALKKRMES 479 (591)
T ss_pred CEEEEEEEcCCCCCHHHHHHHHhhhh--cceEEEEEecCCCceEEEEEEEeCC------HHHHHHHHHHHHH
Confidence 45777889999999999999999876 5555554433222334444434332 1223455555544
No 173
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=21.05 E-value=97 Score=22.56 Aligned_cols=25 Identities=4% Similarity=-0.017 Sum_probs=21.9
Q ss_pred CCCCChHHHHHHHHHhCCCeeeEEE
Q 024670 165 EYRPELMSDLRQALDALPLKMLKAE 189 (264)
Q Consensus 165 ~~r~glL~~Il~aLe~lgL~V~~A~ 189 (264)
+..+|++.+|+++|.+.++.|....
T Consensus 12 ~~~~g~~~~IF~~La~~~I~vDmI~ 36 (75)
T cd04935 12 WQQVGFLADVFAPFKKHGVSVDLVS 36 (75)
T ss_pred CCccCHHHHHHHHHHHcCCcEEEEE
Confidence 4678999999999999999887774
No 174
>PRK14626 hypothetical protein; Provisional
Probab=20.86 E-value=2.4e+02 Score=22.47 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHhccCC
Q 024670 111 LAEVIRQVKELKTNAIEASKGFL 133 (264)
Q Consensus 111 L~~ai~yik~Lq~~~~~l~~~~~ 133 (264)
+.+-++-.+++|++.++++.++.
T Consensus 7 ~~~mmkqaq~mQ~km~~~qeeL~ 29 (110)
T PRK14626 7 LAELMKQMQSIKENVEKAKEELK 29 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 55667778888999888887654
No 175
>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]
Probab=20.62 E-value=2.1e+02 Score=26.63 Aligned_cols=63 Identities=10% Similarity=0.164 Sum_probs=42.2
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCeeeEEEEEecCCeEEE--EEEEeecCCCCchhhhhhHHHHHHHHHHHHH
Q 024670 160 ASICCEYRPELMSDLRQALDALPLKMLKAEISTLGGRLKN--VIVFTSCKEGNAEASQTLANDVQQALNSVLE 230 (264)
Q Consensus 160 vev~c~~r~glL~~Il~aLe~lgL~V~~A~Ist~g~r~~~--vF~v~~~~~~~~~~~~~~~~~l~qAL~~vl~ 230 (264)
+.+.-.+.||++.+|.-+|..-|..|.+--+.-.....+. ++++ |... ..++..++.|.+++.
T Consensus 80 inclVqnEpGvlsRisGvlAaRGfNIdSLvVc~tevk~LsrmTIVl--~Gtd------~VveQa~rQiedlVn 144 (309)
T KOG2663|consen 80 INCLVQNEPGVLSRISGVLAARGFNIDSLVVCLTEVKALSRMTIVL--QGTD------GVVEQARRQIEDLVN 144 (309)
T ss_pred EEEEecCCchHHHHHHHHHHhccCCchheeeechhhhhhhhceEEE--eccH------HHHHHHHHHHHHhhh
Confidence 4455589999999999999999999988877765554443 4444 2111 224556666666543
No 176
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=20.45 E-value=2.9e+02 Score=20.60 Aligned_cols=24 Identities=8% Similarity=-0.038 Sum_probs=20.4
Q ss_pred CCCChHHHHHHHHHhCCCeeeEEE
Q 024670 166 YRPELMSDLRQALDALPLKMLKAE 189 (264)
Q Consensus 166 ~r~glL~~Il~aLe~lgL~V~~A~ 189 (264)
...|++.+++++|+++|+.+-+.-
T Consensus 13 ~evGF~rk~L~I~E~~~is~Eh~P 36 (76)
T cd04911 13 REVGFGRKLLSILEDNGISYEHMP 36 (76)
T ss_pred chhcHHHHHHHHHHHcCCCEeeec
Confidence 457999999999999999887653
No 177
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=20.39 E-value=3.7e+02 Score=25.56 Aligned_cols=34 Identities=24% Similarity=0.286 Sum_probs=26.0
Q ss_pred EEEEcC---CCCChHHHHHHHHHhCCCeeeEEEEEecCC
Q 024670 160 ASICCE---YRPELMSDLRQALDALPLKMLKAEISTLGG 195 (264)
Q Consensus 160 vev~c~---~r~glL~~Il~aLe~lgL~V~~A~Ist~g~ 195 (264)
|.+... +.||.+.+++++|.+.|+.|.. +++.+.
T Consensus 340 IsvVG~~~~~~~g~~a~i~~~L~~~gIni~~--i~~s~~ 376 (401)
T TIGR00656 340 VSIVGAGMVGAPGVASEIFSALEEKNINILM--IGSSET 376 (401)
T ss_pred EEEECCCcccCccHHHHHHHHHHHCCCcEEE--EEcCCC
Confidence 445553 6899999999999999999984 444443
No 178
>PRK14637 hypothetical protein; Provisional
Probab=20.05 E-value=5.3e+02 Score=21.62 Aligned_cols=60 Identities=13% Similarity=0.179 Sum_probs=42.1
Q ss_pred CCChHHHHHHHHHhCCCeeeEEEEEecCC-eEEEEEEEeecCCCCchhhhhhHHHHHHHHHHHHHh
Q 024670 167 RPELMSDLRQALDALPLKMLKAEISTLGG-RLKNVIVFTSCKEGNAEASQTLANDVQQALNSVLEK 231 (264)
Q Consensus 167 r~glL~~Il~aLe~lgL~V~~A~Ist~g~-r~~~vF~v~~~~~~~~~~~~~~~~~l~qAL~~vl~~ 231 (264)
.-|....+..+++++|+++...++...++ .+.-+|+- +.++. .-..+..+.++|..+|+.
T Consensus 7 ~~~~~~~v~p~~~~~g~eLvdve~~~~~~~~~lrV~ID---~~~gV--~iddC~~vSr~Is~~LD~ 67 (151)
T PRK14637 7 DLGYFSECEPVVEGLGCKLVDLSRRVQQAQGRVRAVIY---SAGGV--GLDDCARVHRILVPRLEA 67 (151)
T ss_pred cccHHHHHHHHHHhcCCEEEEEEEEecCCCcEEEEEEE---CCCCC--CHHHHHHHHHHHHHHhcc
Confidence 45788888999999999999999987655 45555443 22222 334567778888777763
Done!